BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032090
(147 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6DFN1|NDUF3_XENTR NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor
3 OS=Xenopus tropicalis GN=ndufaf3 PE=2 SV=1
Length = 183
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 62/107 (57%)
Query: 36 YTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRY 95
Y+ GF +NG + G I +L W + +I LS+F ++ P EIL++G G
Sbjct: 68 YSSQGFIINGDKVVGPCAVIPKAILQWNVGSYKDINLESLSLFHMLSPRIEILVVGTGDR 127
Query: 96 IEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 142
+E ++P + +F+R G+ +E D+ NA +T+N L E RI AAAL+P
Sbjct: 128 VERLDPNILKFMRQKGVAVEVQDTANACATFNFLVSERRITAAALIP 174
>sp|Q9JKL4|NDUF3_MOUSE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor
3 OS=Mus musculus GN=Ndufaf3 PE=2 SV=1
Length = 185
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 61/107 (57%)
Query: 36 YTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRY 95
Y+ GFT+ G + G + + ++ W +IT S+F ++ P EI+++G G
Sbjct: 64 YSSRGFTICGNRVFGPCVLLPQTVVQWNVGSHQDITEESFSLFWMLEPRIEIVVVGTGNK 123
Query: 96 IEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 142
E ++P++ Q +R G+ +E D+ NA +T+N L EGR+ AAL+P
Sbjct: 124 TERLHPQVLQAMRQRGIAVEVQDTPNACATFNFLCHEGRVTGAALIP 170
>sp|O08776|NDUF3_RAT NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor
3 OS=Rattus norvegicus GN=Ndufaf3 PE=2 SV=1
Length = 185
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 59/107 (55%)
Query: 36 YTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRY 95
Y GFT+NG + G + ++ W +IT SIF ++ P EI+++G G
Sbjct: 64 YNSRGFTINGNRVFGPCALLPQTVVQWNVGSHQDITEESFSIFWMLEPRIEIVVVGTGNK 123
Query: 96 IEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 142
E ++ ++ Q +R G+ +E D+ NA +T+N L EGR+ AAL+P
Sbjct: 124 TERLHSQVLQAMRQRGIAVEIQDTPNACATFNFLCHEGRVTGAALIP 170
>sp|Q2HJI2|NDUF3_BOVIN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor
3 OS=Bos taurus GN=NDUFAF3 PE=2 SV=1
Length = 184
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 59/107 (55%)
Query: 36 YTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRY 95
Y+ GF VNG + G + ++ W + +IT S+F ++ P EI+++G G
Sbjct: 63 YSSRGFVVNGNRVFGPCALLPQSVVQWNVGSYQDITEESFSLFWMLEPRIEIVVVGTGDR 122
Query: 96 IEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 142
E + P + + +R G+ +E D+ NA +T+N L EGR+ AAL+P
Sbjct: 123 TERLQPHVLRAMRQRGIAVEVQDTPNACATFNFLCHEGRVTGAALIP 169
>sp|Q9BU61|NDUF3_HUMAN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor
3 OS=Homo sapiens GN=NDUFAF3 PE=1 SV=1
Length = 184
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 59/107 (55%)
Query: 36 YTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRY 95
Y GF +NG + G + + ++ W +IT + S+F L+ P EI+++G G
Sbjct: 63 YNSRGFMINGNRVLGPCALLPHSVVQWNVGSHQDITEDSFSLFWLLEPRIEIVVVGTGDR 122
Query: 96 IEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 142
E + ++ Q +R G+ +E D+ NA +T+N L EGR+ AAL+P
Sbjct: 123 TERLQSQVLQAMRQRGIAVEVQDTPNACATFNFLCHEGRVTGAALIP 169
>sp|A1L1F1|NDUF3_DANRE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor
3 OS=Danio rerio GN=ndufaf3 PE=2 SV=1
Length = 174
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 56/102 (54%)
Query: 36 YTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRY 95
Y+ GF +NG G + +L W S+I+ LS+F L+ P E+L+LG G
Sbjct: 62 YSPRGFNINGNTVFGPCAVLPPAILQWNVGSHSDISVESLSLFYLLEPQIEVLVLGTGAR 121
Query: 96 IEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVA 137
E ++ E+ + ++ G+ +E D+ NA +T+N L+ E R+ A
Sbjct: 122 TERLHAEVLEELKKRGIAVEVQDTPNACATFNFLSSEKRLAA 163
>sp|P29962|Y1784_RHOCB Uncharacterized protein RCAP_rcc01784 OS=Rhodobacter capsulatus
(strain ATCC BAA-309 / NBRC 16581 / SB1003)
GN=RCAP_rcc01784 PE=4 SV=1
Length = 124
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 12/122 (9%)
Query: 26 APNQP-----LPSLRYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQL 80
AP +P LP Y F + G + G LL + WT F + L+ +
Sbjct: 2 APREPGFAGALPIDGYGPGFFRIAGAVHRGGLLIHAEAAMPWT--GFDD-----LAALRA 54
Query: 81 VRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAAL 140
+ ++L+ G G I + L+ + + G+ E + + +AA YN+L EGR V AAL
Sbjct: 55 LAGQVDLLLCGMGADIAHLPKGLQVELEALGVMAEPMSTASAARHYNVLLSEGRRVGAAL 114
Query: 141 LP 142
LP
Sbjct: 115 LP 116
>sp|P48508|GSH0_RAT Glutamate--cysteine ligase regulatory subunit OS=Rattus norvegicus
GN=Gclm PE=1 SV=1
Length = 274
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 11/88 (12%)
Query: 54 CIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMK 113
CI L W+ S+I+P+ LVR P++L +E +NP+ R+ ++ + K
Sbjct: 46 CIQKTLNEWS----SQISPD------LVREFPDVLECTMSHAVEKINPDEREEMKVSA-K 94
Query: 114 LEAIDSRNAASTYNILNEEGRIVAAALL 141
L + S +++ST N ++ ++ A L
Sbjct: 95 LFIVGSNSSSSTRNAVDMACSVLGVAQL 122
>sp|Q2T9Y6|GSH0_BOVIN Glutamate--cysteine ligase regulatory subunit OS=Bos taurus GN=GCLM
PE=2 SV=1
Length = 274
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 11/88 (12%)
Query: 54 CIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMK 113
CI L W+ S+I+P+ L+R P++L +E +NP+ R+ ++ + K
Sbjct: 46 CIQKTLNEWS----SQISPD------LIREFPDVLECTVSHAVEKINPDEREEMKVSA-K 94
Query: 114 LEAIDSRNAASTYNILNEEGRIVAAALL 141
L + S +++ST N ++ ++ A L
Sbjct: 95 LFIVGSNSSSSTRNAVDMACSVLGVAQL 122
>sp|Q54P72|Y4753_DICDI Probable acid phosphatase DDB_G0284753 OS=Dictyostelium discoideum
GN=DDB_G0284753 PE=3 SV=1
Length = 464
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 78 FQLVRPIPEILILGCGRYIEPVNPELR 104
F+ R PE+ ILG GR+++ +N EL+
Sbjct: 300 FKSARYFPEMSILGIGRFVDDLNKELK 326
>sp|Q5Z041|OBG_NOCFA GTPase obg OS=Nocardia farcinica (strain IFM 10152) GN=obg PE=3
SV=1
Length = 485
Score = 30.4 bits (67), Expect = 4.3, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 11 LPNLMRSLRKGSPKAAPNQP-LPSLRYTDTGFTVN 44
L +L+R R+ PKAAP +P + + ++GFTV+
Sbjct: 335 LADLVREYREAHPKAAPKRPVIRPIAVDESGFTVH 369
>sp|O09172|GSH0_MOUSE Glutamate--cysteine ligase regulatory subunit OS=Mus musculus
GN=Gclm PE=2 SV=1
Length = 274
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 10/58 (17%)
Query: 54 CIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTG 111
CI L W+ S+I+P+ LVR P++L +E +NP+ R+ ++ +
Sbjct: 46 CIQKTLNEWS----SQISPD------LVREFPDVLECTMSHAVEKINPDEREEMKVSA 93
>sp|P48507|GSH0_HUMAN Glutamate--cysteine ligase regulatory subunit OS=Homo sapiens
GN=GCLM PE=1 SV=1
Length = 274
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 10/58 (17%)
Query: 54 CIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTG 111
CI L W+ S+I P+ LVR P++L +E +NP+ R+ ++ +
Sbjct: 46 CIQKTLNEWS----SQINPD------LVREFPDVLECTVSHAVEKINPDEREEMKVSA 93
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,941,278
Number of Sequences: 539616
Number of extensions: 2140630
Number of successful extensions: 4720
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 4712
Number of HSP's gapped (non-prelim): 16
length of query: 147
length of database: 191,569,459
effective HSP length: 106
effective length of query: 41
effective length of database: 134,370,163
effective search space: 5509176683
effective search space used: 5509176683
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)