Query 032090
Match_columns 147
No_of_seqs 131 out of 524
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 15:12:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032090.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032090hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fvt_A Conserved hypothetical 100.0 6.1E-43 2.1E-47 262.6 13.0 119 26-144 9-127 (135)
2 2fi9_A Outer membrane protein; 100.0 2.3E-42 7.8E-47 257.0 14.5 117 26-143 11-127 (128)
3 2gm2_A Conserved hypothetical 100.0 1.2E-41 4.2E-46 254.5 13.3 117 26-144 7-124 (132)
4 3cpk_A Uncharacterized protein 100.0 2.4E-40 8.1E-45 252.4 14.2 121 26-146 7-150 (150)
5 2ab1_A Hypothetical protein; H 100.0 5.6E-39 1.9E-43 237.3 13.3 111 30-142 3-120 (122)
6 2cyj_A Hypothetical protein PH 100.0 7.4E-36 2.5E-40 219.5 7.9 107 31-142 1-116 (118)
7 1ihn_A Hypothetical protein MT 100.0 2.7E-33 9.3E-38 204.5 4.0 99 32-141 3-110 (113)
8 3kkj_A Amine oxidase, flavin-c 64.2 4.1 0.00014 28.5 2.5 31 85-119 3-33 (336)
9 1kjn_A MTH0777; hypotethical p 60.3 8.3 0.00028 29.0 3.6 50 86-135 9-60 (157)
10 3md9_A Hemin-binding periplasm 59.5 15 0.00053 27.6 5.2 35 80-118 55-89 (255)
11 1id1_A Putative potassium chan 57.0 16 0.00054 25.4 4.6 46 84-133 3-50 (153)
12 3zqu_A Probable aromatic acid 53.0 11 0.00039 29.0 3.5 45 86-130 6-50 (209)
13 2r7a_A Bacterial heme binding 52.5 45 0.0015 24.9 6.8 35 80-118 55-89 (256)
14 3ahc_A Phosphoketolase, xylulo 52.0 3.5 0.00012 38.5 0.4 54 84-137 659-726 (845)
15 3psh_A Protein HI_1472; substr 49.4 18 0.00063 28.3 4.3 35 80-119 80-114 (326)
16 3nbm_A PTS system, lactose-spe 49.4 9 0.00031 26.5 2.1 37 83-121 52-88 (108)
17 4hn9_A Iron complex transport 48.8 18 0.00061 28.7 4.2 34 80-119 112-145 (335)
18 2bib_A CBPE, teichoic acid pho 48.2 18 0.00061 30.9 4.3 40 75-116 238-279 (547)
19 2ejb_A Probable aromatic acid 47.2 15 0.00051 27.8 3.2 43 86-128 3-45 (189)
20 1itz_A Transketolase; calvin c 43.7 8.4 0.00029 34.5 1.5 34 85-119 563-596 (675)
21 3ju3_A Probable 2-oxoacid ferr 43.7 10 0.00034 26.3 1.6 35 83-118 12-46 (118)
22 1umd_B E1-beta, 2-OXO acid deh 43.2 7.5 0.00026 31.3 1.0 37 81-118 199-235 (324)
23 3ipz_A Monothiol glutaredoxin- 42.8 16 0.00055 24.4 2.6 50 70-119 3-55 (109)
24 2r79_A Periplasmic binding pro 41.6 37 0.0013 26.0 4.9 35 80-118 55-89 (283)
25 4gxw_A Adenosine deaminase; am 41.2 14 0.00048 30.9 2.4 31 90-121 239-269 (380)
26 3rim_A Transketolase, TK; TPP, 39.7 9.5 0.00032 34.6 1.2 35 85-120 585-619 (700)
27 2r8o_A Transketolase 1, TK 1; 39.5 9.1 0.00031 34.2 1.1 34 85-119 550-583 (669)
28 1n2z_A Vitamin B12 transport p 39.4 33 0.0011 25.6 4.1 34 81-118 54-87 (245)
29 3m49_A Transketolase; alpha-be 39.0 10 0.00036 34.2 1.4 35 85-120 577-611 (690)
30 1w85_B Pyruvate dehydrogenase 38.7 9.5 0.00033 30.7 1.0 38 80-118 197-234 (324)
31 2e6k_A Transketolase; structur 38.4 10 0.00036 33.7 1.3 34 85-119 542-575 (651)
32 3l84_A Transketolase; TKT, str 38.3 10 0.00036 33.8 1.3 35 84-119 525-559 (632)
33 2yan_A Glutaredoxin-3; oxidore 37.9 27 0.00091 22.8 3.0 37 85-121 17-56 (105)
34 2nyt_A Probable C->U-editing e 37.9 77 0.0026 24.0 6.0 51 84-134 110-163 (190)
35 2q8p_A Iron-regulated surface 37.7 20 0.00068 26.9 2.7 33 81-118 57-89 (260)
36 1p3y_1 MRSD protein; flavoprot 36.6 28 0.00096 26.4 3.3 45 85-129 9-53 (194)
37 1gpu_A Transketolase; transfer 35.6 8.6 0.00029 34.5 0.3 34 85-119 555-588 (680)
38 3lgd_A Adenosine deaminase CEC 34.8 27 0.00091 30.5 3.3 37 84-123 352-388 (508)
39 3fwz_A Inner membrane protein 34.2 32 0.0011 23.6 3.1 32 85-120 8-39 (140)
40 1wdi_A Hypothetical protein TT 34.0 65 0.0022 27.0 5.4 43 97-139 187-256 (345)
41 3rht_A (gatase1)-like protein; 33.6 38 0.0013 26.8 3.7 37 85-122 5-41 (259)
42 2ozl_B PDHE1-B, pyruvate dehyd 33.4 12 0.00039 30.7 0.7 38 80-118 212-249 (341)
43 1iv0_A Hypothetical protein; r 33.1 1E+02 0.0034 20.6 5.4 37 82-118 49-92 (98)
44 1sbz_A Probable aromatic acid 33.1 32 0.0011 26.2 3.1 43 87-129 3-46 (197)
45 2bfd_B 2-oxoisovalerate dehydr 33.0 12 0.00041 30.5 0.7 37 81-118 216-253 (342)
46 3uk1_A Transketolase; structur 33.0 12 0.00042 34.0 0.8 34 85-119 598-631 (711)
47 3mcu_A Dipicolinate synthase, 32.9 31 0.0011 26.5 3.1 42 86-127 7-49 (207)
48 3hh1_A Tetrapyrrole methylase 32.9 74 0.0025 21.4 4.8 40 79-118 74-115 (117)
49 1wik_A Thioredoxin-like protei 32.6 56 0.0019 21.4 4.0 36 85-120 15-53 (109)
50 1e2b_A Enzyme IIB-cellobiose; 32.0 17 0.00058 24.7 1.3 30 88-117 8-37 (106)
51 3oz2_A Digeranylgeranylglycero 31.9 19 0.00066 27.9 1.8 31 85-119 5-35 (397)
52 3fau_A NEDD4-binding protein 2 30.9 20 0.00069 23.0 1.4 30 87-116 38-71 (82)
53 2obn_A Hypothetical protein; s 30.3 44 0.0015 27.7 3.8 39 73-114 64-106 (349)
54 1vky_A S-adenosylmethionine:tR 30.0 69 0.0024 26.8 4.9 43 97-139 189-259 (347)
55 3llv_A Exopolyphosphatase-rela 29.3 41 0.0014 22.6 2.9 32 85-120 7-38 (141)
56 1yy3_A S-adenosylmethionine:tR 29.1 72 0.0025 26.7 4.8 43 97-139 186-256 (346)
57 2eq6_A Pyruvate dehydrogenase 28.9 1.9E+02 0.0065 23.7 7.5 76 37-117 119-198 (464)
58 1r61_A Metal-dependent hydrola 28.6 47 0.0016 25.1 3.4 50 69-120 88-145 (207)
59 3kom_A Transketolase; rossmann 28.5 12 0.0004 33.7 -0.1 35 84-119 549-583 (663)
60 2etv_A Iron(III) ABC transport 27.2 95 0.0032 24.6 5.2 33 82-119 94-126 (346)
61 3zyw_A Glutaredoxin-3; metal b 27.1 31 0.0011 23.2 2.0 37 84-120 15-54 (111)
62 3mos_A Transketolase, TK; thia 26.1 14 0.00047 32.8 -0.1 34 84-118 498-531 (616)
63 3qjg_A Epidermin biosynthesis 25.9 19 0.00065 26.9 0.7 43 86-128 7-49 (175)
64 3sho_A Transcriptional regulat 25.7 60 0.0021 23.0 3.4 49 69-118 23-72 (187)
65 3fxa_A SIS domain protein; str 25.7 28 0.00096 25.3 1.6 54 69-123 28-83 (201)
66 2d59_A Hypothetical protein PH 25.4 59 0.002 22.8 3.3 50 68-119 8-57 (144)
67 1g63_A Epidermin modifying enz 25.3 19 0.00066 27.0 0.6 43 86-128 4-46 (181)
68 4g85_A Histidine-tRNA ligase, 25.2 38 0.0013 28.9 2.5 35 84-118 419-453 (517)
69 3oqb_A Oxidoreductase; structu 25.2 2E+02 0.0069 22.7 6.9 52 82-136 81-137 (383)
70 3rys_A Adenosine deaminase 1; 24.9 38 0.0013 27.7 2.4 36 84-122 217-252 (343)
71 3iar_A Adenosine deaminase; pu 24.5 45 0.0015 27.6 2.8 36 84-122 229-264 (367)
72 1vdc_A NTR, NADPH dependent th 24.3 2.3E+02 0.0078 21.3 7.3 84 31-118 92-189 (333)
73 4g84_A Histidine--tRNA ligase, 24.2 31 0.0011 28.6 1.8 35 84-118 366-400 (464)
74 1qv9_A F420-dependent methylen 23.6 36 0.0012 27.6 1.9 67 67-133 41-113 (283)
75 3nkl_A UDP-D-quinovosamine 4-d 23.4 43 0.0015 22.6 2.2 40 83-122 64-103 (141)
76 2z6r_A Diphthine synthase; met 23.3 1.2E+02 0.0042 23.1 5.0 41 85-125 78-119 (265)
77 1p6o_A Cytosine deaminase; hyd 22.8 88 0.003 22.7 3.9 51 82-135 103-153 (161)
78 2bcg_G Secretory pathway GDP d 22.8 37 0.0013 28.0 2.0 33 83-119 10-42 (453)
79 2l2q_A PTS system, cellobiose- 22.6 33 0.0011 23.1 1.4 38 87-124 8-47 (109)
80 1vp8_A Hypothetical protein AF 22.4 1.3E+02 0.0044 23.3 4.8 37 79-116 62-103 (201)
81 3pao_A Adenosine deaminase; st 22.4 45 0.0016 27.0 2.4 32 90-122 218-249 (326)
82 3god_A CAS1; crispr, metallonu 21.8 46 0.0016 27.2 2.3 32 85-119 59-90 (328)
83 1yvv_A Amine oxidase, flavin-c 21.6 56 0.0019 24.9 2.7 32 85-120 3-34 (336)
84 3dhx_A Methionine import ATP-b 21.6 70 0.0024 21.4 2.9 18 101-118 79-96 (106)
85 2qbu_A Precorrin-2 methyltrans 21.4 1.2E+02 0.004 22.4 4.4 39 81-119 91-130 (232)
86 3qhp_A Type 1 capsular polysac 21.4 52 0.0018 22.2 2.3 30 83-116 31-60 (166)
87 3p94_A GDSL-like lipase; serin 21.3 1.3E+02 0.0046 20.7 4.5 52 81-132 71-149 (204)
88 3rp8_A Flavoprotein monooxygen 21.3 48 0.0016 26.4 2.3 33 83-119 22-54 (407)
89 2qtc_A Pyruvate dehydrogenase 21.1 24 0.00081 32.9 0.5 34 85-119 724-758 (886)
90 3nkd_A Crispr-associated prote 21.1 68 0.0023 25.9 3.2 32 85-119 49-80 (305)
91 1lss_A TRK system potassium up 21.1 85 0.0029 20.4 3.3 30 86-119 6-35 (140)
92 3hp4_A GDSL-esterase; psychrot 20.6 1.6E+02 0.0056 19.9 4.9 48 84-131 66-130 (185)
93 2g1u_A Hypothetical protein TM 20.1 62 0.0021 22.3 2.4 34 83-120 18-51 (155)
94 1vg0_A RAB proteins geranylger 20.1 54 0.0019 29.4 2.6 32 84-119 8-39 (650)
No 1
>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1
Probab=100.00 E-value=6.1e-43 Score=262.64 Aligned_cols=119 Identities=27% Similarity=0.339 Sum_probs=114.4
Q ss_pred CCCCCCCeeeEeCCcEEEcCEEEeeeEEEeCCceecCCCCCCCCCChhhhhchhhhcCCCcEEEEeecCCCCCCCHHHHH
Q 032090 26 APNQPLPSLRYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQ 105 (147)
Q Consensus 26 ~~~~~~~~~~Y~~g~f~Ing~~y~gsviv~p~~v~~W~~~~~~~l~~e~l~~l~~l~~~pEvlIIGTG~~~~~l~~~l~~ 105 (147)
+++..+++..|++|+|+|||+.|.||++|+|++++.|+++++++|++++|+.|..+.|+||+||||||+++.+++|++++
T Consensus 9 ~~~~~~~I~~y~~g~f~ing~~~~gsilv~p~~~~~W~~~~~~~l~~e~l~~l~~~~p~pevliiGTG~~~~~l~p~l~~ 88 (135)
T 2fvt_A 9 HFPRTAAIDAYGKGGFYFAGMSHQGSLLFLPDAVWGWDVTKPEQIDRYSLQRVFDNANAIDTLIVGTGADVWIAPRQLRE 88 (135)
T ss_dssp CCCSCCCCCCEETTEEECSSSEECSEEEECSSCEEEESCCSTTCCCTTTTHHHHHTTTSCSEEEEECTTSCCCCCHHHHH
T ss_pred cCCCCceEEEEcCCEEEECCEEEEeCEEEeCCCccccCCCCcccCCHHHHHHHHhcCCCCCEEEEcCCCCCCcCCHHHHH
Confidence 56677889999999999999999999999999999999999999999999998888899999999999999999999999
Q ss_pred HHHHcCCeEEEeChHHHHHHHHhhhhccceeEEEeecCC
Q 032090 106 FIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPYG 144 (147)
Q Consensus 106 ~l~~~GI~vEvM~T~aAcrTyNiL~sEGR~VaAaLlp~~ 144 (147)
+|+++||++|+|||++||||||+|++|||+|+|||||+.
T Consensus 89 ~l~~~GI~vE~M~T~aAcrTyNiL~~EgR~VaAaLi~~~ 127 (135)
T 2fvt_A 89 ALRGVNVVLDTMQTGPAIRTYNIMIGERRRVAAALIAVP 127 (135)
T ss_dssp HHHTTTCEEEEECHHHHHHHHHHHHHHTSCEEEEEECCC
T ss_pred HHHHcCCEEEEeCHHHHHHHHHHHHhCCCcEEEEEcCCC
Confidence 999999999999999999999999999999999999975
No 2
>2fi9_A Outer membrane protein; bartonella hense protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bartonella henselae} SCOP: c.103.1.1
Probab=100.00 E-value=2.3e-42 Score=257.04 Aligned_cols=117 Identities=23% Similarity=0.301 Sum_probs=111.6
Q ss_pred CCCCCCCeeeEeCCcEEEcCEEEeeeEEEeCCceecCCCCCCCCCChhhhhchhhhcCCCcEEEEeecCCCCCCCHHHHH
Q 032090 26 APNQPLPSLRYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQ 105 (147)
Q Consensus 26 ~~~~~~~~~~Y~~g~f~Ing~~y~gsviv~p~~v~~W~~~~~~~l~~e~l~~l~~l~~~pEvlIIGTG~~~~~l~~~l~~ 105 (147)
+++..+++..|++|+|+|||+.|.||++|+|+++.+|++++ ++|++++|+.+..+.|+||+||||||.++++++|++++
T Consensus 11 ~~~~~~~I~~y~~g~f~i~g~~~~g~i~v~p~~~~~W~~~~-~~l~~~~l~~l~~~~p~pevliiGtG~~~~~l~p~~~~ 89 (128)
T 2fi9_A 11 HFPGRAPIDAYGNGGFRFADMSHRGSIICIPSGIYGIDMTG-PVPTQEDISRVLEESDQIEVLLIGTGVELLRLPEELRV 89 (128)
T ss_dssp CBSSCCCEEEEETTEEEETTEEEESEEEEETTEEEEECCSS-SSCCTGGGHHHHHTGGGCSEEEEECTTSCCCCCHHHHH
T ss_pred CCCCCceEEEEcCCEEEECCEEEEeCEEEeCCCeeccCCCc-CCCCHHHHHHHHhcCCCCCEEEECCCCCCCCCCHHHHH
Confidence 34567888899999999999999999999999999999999 99999999988888889999999999999999999999
Q ss_pred HHHHcCCeEEEeChHHHHHHHHhhhhccceeEEEeecC
Q 032090 106 FIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPY 143 (147)
Q Consensus 106 ~l~~~GI~vEvM~T~aAcrTyNiL~sEGR~VaAaLlp~ 143 (147)
+|+++||++|+|+|++||||||+|++|||+|+|||||+
T Consensus 90 ~l~~~GI~vE~m~T~aAcrtyNiL~~EgR~VaaaLi~~ 127 (128)
T 2fi9_A 90 LLWEKRISSDTMSTGAAVRTFNVLLAEDRAVAALLFAV 127 (128)
T ss_dssp HHHHTTCEEEEECHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred HHHHcCCEEEEeCHHHHHHHHHHHHhCCCcEEEEEEec
Confidence 99999999999999999999999999999999999996
No 3
>2gm2_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Xanthomonas campestris PV}
Probab=100.00 E-value=1.2e-41 Score=254.55 Aligned_cols=117 Identities=24% Similarity=0.365 Sum_probs=109.7
Q ss_pred CCCCCCCeeeEeCCcEEEcCEEEeeeEEEeCCce-ecCCCCCCCCCChhhhhchhhhcCCCcEEEEeecCCCCCCCHHHH
Q 032090 26 APNQPLPSLRYTDTGFTVNGVQYEGSLLCIGNLL-LSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELR 104 (147)
Q Consensus 26 ~~~~~~~~~~Y~~g~f~Ing~~y~gsviv~p~~v-~~W~~~~~~~l~~e~l~~l~~l~~~pEvlIIGTG~~~~~l~~~l~ 104 (147)
.++..+++..|++|+|+|||+.|.||++|+|+++ +.|+++++++|++++|+.+ ++++||+||||||+++.+++|+++
T Consensus 7 ~~~~~~~I~~y~~g~f~i~g~~~~g~ilv~p~~~v~~W~~~~~~~l~~e~l~~l--l~~~pevliiGTG~~~~~l~p~~~ 84 (132)
T 2gm2_A 7 HPDYTYALRAADGRHAKVNEQILQQSFILMPDELVEHWPVPSLGQLQPAHMDAV--LALNPAVILLGTGERQQFPSTDVL 84 (132)
T ss_dssp SCCCCCCEEEECSSCEEETTEEECSEEEECSSCEECCCCCSSGGGCCTTTSHHH--HHHCCSEEEEECTTSCCCCCHHHH
T ss_pred CCCCCceEEEEcCCEEEECCEEEEeCEEEeCCCceeecCCCCcccCCHHHHHHH--HhcCCCEEEECCCCCCCcCCHHHH
Confidence 3456788999999999999999999999999997 9999999999999999964 455699999999999999999999
Q ss_pred HHHHHcCCeEEEeChHHHHHHHHhhhhccceeEEEeecCC
Q 032090 105 QFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPYG 144 (147)
Q Consensus 105 ~~l~~~GI~vEvM~T~aAcrTyNiL~sEGR~VaAaLlp~~ 144 (147)
++|+++||++|+|||++||||||+|++|||+|+|||+|++
T Consensus 85 ~~l~~~GI~vE~m~T~aAcrTyNiL~~EgR~VaAaLi~~~ 124 (132)
T 2gm2_A 85 AACLTRGIGLEAMTNAAAARTYNVLASEGRRVALAMIVGG 124 (132)
T ss_dssp HHHHHHTCEEEEECHHHHHHHHHHHHHHTCCEEEEEECCC
T ss_pred HHHHHcCCEEEEeCHHHHHHHHHHHHhCCCcEEEEEccCC
Confidence 9999999999999999999999999999999999999985
No 4
>3cpk_A Uncharacterized protein Q7W7N7_borpa; BPP2477, BER31, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Bordetella parapertussis 12822} PDB: 2k2e_A
Probab=100.00 E-value=2.4e-40 Score=252.41 Aligned_cols=121 Identities=32% Similarity=0.435 Sum_probs=109.8
Q ss_pred CCCCCCCeeeEeCCcEEEcCEEEeeeEEEeCCce-ecCCCCCCCCCChhhhhchhhhcC---------------------
Q 032090 26 APNQPLPSLRYTDTGFTVNGVQYEGSLLCIGNLL-LSWTPKKFSEITPNCLSIFQLVRP--------------------- 83 (147)
Q Consensus 26 ~~~~~~~~~~Y~~g~f~Ing~~y~gsviv~p~~v-~~W~~~~~~~l~~e~l~~l~~l~~--------------------- 83 (147)
+.+..++++.|++|+|+|||++|.||++++|++. ..|+++++++|+.++|+.+..+.+
T Consensus 7 ~~~~~~~I~~Y~~g~~~ing~~~~gsv~v~p~g~v~~W~~~~~~~i~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~p~ 86 (150)
T 3cpk_A 7 PATALNTVTAYGDGYIEVNQVRFSHAIAFAPEGPVASWPVQRPADITASLLQQAAGLAEVVRDPLAFLDEPEAGAGARPA 86 (150)
T ss_dssp CCCCCCCEEEEETTEEEETTEEECSCEEECSSSCCEECCCSSGGGCCHHHHHHHHTCC----------------------
T ss_pred CCCCCceEEEEcCCEEEECCEEEEcCEEEecCCceeecCCCChhhCCHHHHHHHHhcccccccchhhccccccccccccC
Confidence 3446778889999999999999999999999875 999999999999999998766644
Q ss_pred -CCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeChHHHHHHHHhhhhccceeEEEeecCCcC
Q 032090 84 -IPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPYGVS 146 (147)
Q Consensus 84 -~pEvlIIGTG~~~~~l~~~l~~~l~~~GI~vEvM~T~aAcrTyNiL~sEGR~VaAaLlp~~~~ 146 (147)
+||+||||||.++.+++++++++|+++||+||+|+|++||||||+|++|||+|+|||||++-|
T Consensus 87 ~~pEvliiGTG~~~~~l~p~~~~~L~~~GIgvE~M~T~aA~rTyNiL~~EgRrVaaaLi~~~~~ 150 (150)
T 3cpk_A 87 NAPEVLLVGTGRRQHLLGPEQVRPLLAMGVGVEAMDTQAAARTYNILMAEGRRVVVALLPDGDS 150 (150)
T ss_dssp -CCSEEEEECTTSCCCCCHHHHHHHHTTTCEEEEECHHHHHHHHHHHHHTTCCEEEEECCC---
T ss_pred CCCCEEEEcCCCCCCCCCHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHhCCCcEEEEEecCCCC
Confidence 899999999999999999999999999999999999999999999999999999999998643
No 5
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=100.00 E-value=5.6e-39 Score=237.29 Aligned_cols=111 Identities=14% Similarity=0.203 Sum_probs=105.5
Q ss_pred CCCeeeEeCCcEEEcCEEEee-eEEEeCCceecCC-----CCCCCCCChhhhhchhhhcCCCcEEEEeecCCCCC-CCHH
Q 032090 30 PLPSLRYTDTGFTVNGVQYEG-SLLCIGNLLLSWT-----PKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEP-VNPE 102 (147)
Q Consensus 30 ~~~~~~Y~~g~f~Ing~~y~g-sviv~p~~v~~W~-----~~~~~~l~~e~l~~l~~l~~~pEvlIIGTG~~~~~-l~~~ 102 (147)
.|.+..|++|+|+|||++|.+ |++|+|+++.+|+ .++++++++++|+. +++++||+||||||.+..+ ++|+
T Consensus 3 ~~~I~~y~~g~~~ing~~~~~~siiv~p~~~~~w~w~~~g~~~~~~l~~~~l~~--ll~~~~evliiGtG~~~~~~~~~~ 80 (122)
T 2ab1_A 3 SPEIASLSWGQMKVKGSNTTYKDCKVWPGGSRTWDWRETGTEHSPGVQPADVKE--VVEKGVQTLVIGRGMSEALKVPSS 80 (122)
T ss_dssp CCCEEEEETTEEEETTCSCEESEEEEETTEEEEECHHHHTCCSSSCCCHHHHHH--HHTTCCSEEEEEECSSCCSCCCHH
T ss_pred CCEEEEEcCCEEEECCEEEeCCCEEEECCccccCcccccCcCChhHCCHHHHHH--HhhCCCCEEEECCCCCCccCCCHH
Confidence 467888999999999999999 9999999999998 88999999999995 5788999999999999997 9999
Q ss_pred HHHHHHHcCCeEEEeChHHHHHHHHhhhhccceeEEEeec
Q 032090 103 LRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 142 (147)
Q Consensus 103 l~~~l~~~GI~vEvM~T~aAcrTyNiL~sEGR~VaAaLlp 142 (147)
++++|+++||++|+|+|++||||||+|++|||+|+|||+.
T Consensus 81 ~~~~l~~~gI~ve~m~T~~A~rtyN~L~~EgR~VaAal~~ 120 (122)
T 2ab1_A 81 TVEYLKKHGIDVRVLQTEQAVKEYNALVAQGVRVGGVFHS 120 (122)
T ss_dssp HHHHHHHTTCEEEEECHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred HHHHHHHcCCEEEEeCHHHHHHHHHHHHhCCCcEEEEEee
Confidence 9999999999999999999999999999999999999985
No 6
>2cyj_A Hypothetical protein PH1505; conserved hypothetical protein, structural genomics, NPPSFA; HET: OCS; 1.50A {Pyrococcus horikoshii} SCOP: c.103.1.1
Probab=100.00 E-value=7.4e-36 Score=219.53 Aligned_cols=107 Identities=12% Similarity=0.130 Sum_probs=96.8
Q ss_pred CCeeeEeCCcEEEcCEEEeeeEEEeCCce---ecCCCCC-----CCCCChhhhhchhhhcCCCcEEEEeecCCC-CCCCH
Q 032090 31 LPSLRYTDTGFTVNGVQYEGSLLCIGNLL---LSWTPKK-----FSEITPNCLSIFQLVRPIPEILILGCGRYI-EPVNP 101 (147)
Q Consensus 31 ~~~~~Y~~g~f~Ing~~y~gsviv~p~~v---~~W~~~~-----~~~l~~e~l~~l~~l~~~pEvlIIGTG~~~-~~l~~ 101 (147)
|++..|++|+|+|||+.|.+|++|+|+++ .+|+... +++|+++||+. +++.+||+||||||.++ .++++
T Consensus 1 ~~I~~yg~G~~~i~g~~~~~sviv~p~g~v~~~~w~~~~~~~gt~~~l~~~~~~~--ll~~~~evlliGTG~~~~~~~~~ 78 (118)
T 2cyj_A 1 MKIEEVRFGLVKIDGKEFDHDIVIYPSGRIERRMKEISKKKHGTSHKLDPEELEK--YLVEDFDVLLVGTGIYGMLSLLP 78 (118)
T ss_dssp CCEEEEETTEEEETTEEESSCEEECTTSCEEECCTHHHHHHHSSTTEECHHHHHT--TTTSCCSEEEEEECTTCCCEECH
T ss_pred CceeEecCCEEEECCEEEeeCEEEeCCCcccccccCccccccCCcccCCHHHHHH--HHhcCCCEEEECCCCCccccCCH
Confidence 57888999999999999999999999987 6666544 68899999996 56667999999999995 78999
Q ss_pred HHHHHHHHcCCeEEEeChHHHHHHHHhhhhccceeEEEeec
Q 032090 102 ELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 142 (147)
Q Consensus 102 ~l~~~l~~~GI~vEvM~T~aAcrTyNiL~sEGR~VaAaLlp 142 (147)
+++++|+++ ++|+|+|++||||||+|+ |||+|+|||..
T Consensus 79 ~~~~~l~~~--~ve~M~T~aAcrTYNiL~-EgRrV~aalh~ 116 (118)
T 2cyj_A 79 ESKKLVEDK--EVIEKPTKEALKLLEELW-GKKRILAIIHV 116 (118)
T ss_dssp HHHHHTTTS--EEEEECHHHHHHHHHHHB-TTBCEEEEEEC
T ss_pred HHHHHHHHC--CcEEeCHHHHHHHHHHHh-cCCeEEEEEec
Confidence 999999999 999999999999999999 99999999953
No 7
>1ihn_A Hypothetical protein MTH938; methanobacterium thermoautotrophicum, unknown function; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.103.1.1
Probab=99.97 E-value=2.7e-33 Score=204.52 Aligned_cols=99 Identities=18% Similarity=0.119 Sum_probs=86.0
Q ss_pred CeeeEeCCcEEEcCEEEeeeEEEeCCce---ecCCCCC-----CCCCChhhhhchhhhcCCCcEEEEeecCCC-CCCCHH
Q 032090 32 PSLRYTDTGFTVNGVQYEGSLLCIGNLL---LSWTPKK-----FSEITPNCLSIFQLVRPIPEILILGCGRYI-EPVNPE 102 (147)
Q Consensus 32 ~~~~Y~~g~f~Ing~~y~gsviv~p~~v---~~W~~~~-----~~~l~~e~l~~l~~l~~~pEvlIIGTG~~~-~~l~~~ 102 (147)
++..|++|+|+|||+.|.+|++|+|+++ .+|+... +++|+++||+. +++.+||+||||||.++ ..++++
T Consensus 3 ~I~~yg~G~~~i~g~~~~~sviv~p~g~v~~~~w~~~~~~~gt~~~l~~~~~~~--ll~~~~evlliGTG~~~~~~~~~~ 80 (113)
T 1ihn_A 3 MFSDCRFGSVTYRGREYRSDIVVHVDGSVTPRRKEISRRKYGTSHVMAEEELEE--LLEEKPESIIIGSGVHGALETGFR 80 (113)
T ss_dssp CEEEEETTEEEETTEEECSCEEECTTSCEEECCHHHHHHHHSSTTEECTHHHHH--HHTTCCSEEEEECCTTCCCEESSC
T ss_pred ceeEEcCCEEEECCEEEeeCEEEeCCCcccccccCccccccCccccCCHHHHHH--HHhcCCCEEEECCCCCccccCChh
Confidence 5677999999999999999999999986 6565443 67899999995 55667999999999995 456666
Q ss_pred HHHHHHHcCCeEEEeChHHHHHHHHhhhhccceeEEEee
Q 032090 103 LRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALL 141 (147)
Q Consensus 103 l~~~l~~~GI~vEvM~T~aAcrTyNiL~sEGR~VaAaLl 141 (147)
++ +|+|+|++||||||+|++|||+|+|||.
T Consensus 81 ~~---------ve~M~T~aAcrTYNiL~~EgRrV~aalh 110 (113)
T 1ihn_A 81 SD---------ATVLPTCEAIKRYNEERSAGRRVAAIIH 110 (113)
T ss_dssp CS---------CEEECHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred hE---------EEEcChHHHHHHHHHHHhCCCeEEEEEe
Confidence 64 9999999999999999999999999985
No 8
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=64.16 E-value=4.1 Score=28.45 Aligned_cols=31 Identities=23% Similarity=0.274 Sum_probs=25.0
Q ss_pred CcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeCh
Q 032090 85 PEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDS 119 (147)
Q Consensus 85 pEvlIIGTG~~~~~l~~~l~~~l~~~GI~vEvM~T 119 (147)
.||+|||-|-.- -.....|.++|+.|.+.+-
T Consensus 3 ~dV~IIGaGpaG----L~aA~~La~~G~~V~v~Ek 33 (336)
T 3kkj_A 3 VPIAIIGTGIAG----LSAAQALTAAGHQVHLFDK 33 (336)
T ss_dssp CCEEEECCSHHH----HHHHHHHHHTTCCEEEECS
T ss_pred CCEEEECcCHHH----HHHHHHHHHCCCCEEEEEC
Confidence 689999999652 2566689999999999874
No 9
>1kjn_A MTH0777; hypotethical protein, structural genomics, PSI, protein structure initiative; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.115.1.1
Probab=60.26 E-value=8.3 Score=29.00 Aligned_cols=50 Identities=14% Similarity=0.311 Sum_probs=37.5
Q ss_pred cEEEEeecCCCCCCCHH--HHHHHHHcCCeEEEeChHHHHHHHHhhhhccce
Q 032090 86 EILILGCGRYIEPVNPE--LRQFIRSTGMKLEAIDSRNAASTYNILNEEGRI 135 (147)
Q Consensus 86 EvlIIGTG~~~~~l~~~--l~~~l~~~GI~vEvM~T~aAcrTyNiL~sEGR~ 135 (147)
=+|++||-+...+.|-. +...|+++|+.+-+-.|++|++.--+==-||..
T Consensus 9 ~LilLGCPE~Pvq~p~~lYl~~~Lk~~G~~v~VA~npAAlkLlevaDPe~~Y 60 (157)
T 1kjn_A 9 ALMVLGCPESPVQIPLAIYTSHKLKKKGFRVTVTANPAALRLVQVADPEGIY 60 (157)
T ss_dssp EEEECCCSCSTTHHHHHHHHHHHHHHTTCEEEEEECHHHHHHHHHHSTTCCS
T ss_pred eeEEecCCCCcchhhHHHHHHHHHHhcCCeeEEecCHHHHhheeccCCCcch
Confidence 37889998876555554 455799999999999999999876554444443
No 10
>3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha beta protein, rigid helical backbon substrate-free, heme transport; 1.50A {Yersinia pestis} PDB: 3nu1_A*
Probab=59.48 E-value=15 Score=27.57 Aligned_cols=35 Identities=14% Similarity=0.206 Sum_probs=26.6
Q ss_pred hhcCCCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeC
Q 032090 80 LVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAID 118 (147)
Q Consensus 80 ~l~~~pEvlIIGTG~~~~~l~~~l~~~l~~~GI~vEvM~ 118 (147)
++.-+||+||...... +.+..+.|++.||.+.+++
T Consensus 55 i~~l~PDlIi~~~~~~----~~~~~~~L~~~gipvv~~~ 89 (255)
T 3md9_A 55 ILAMKPTMLLVSELAQ----PSLVLTQIASSGVNVVTVP 89 (255)
T ss_dssp HHTTCCSEEEEETTCS----CHHHHHHHHHTTCEEEEEC
T ss_pred HHccCCCEEEEcCCcC----chhHHHHHHHcCCcEEEeC
Confidence 4455699988765432 4678899999999999885
No 11
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=56.96 E-value=16 Score=25.38 Aligned_cols=46 Identities=7% Similarity=0.075 Sum_probs=31.7
Q ss_pred CCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeChH--HHHHHHHhhhhcc
Q 032090 84 IPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSR--NAASTYNILNEEG 133 (147)
Q Consensus 84 ~pEvlIIGTG~~~~~l~~~l~~~l~~~GI~vEvM~T~--aAcrTyNiL~sEG 133 (147)
+..++|+|.|. +-..+.+.|.+.|..|-+.+.. +.|+.......+|
T Consensus 3 ~~~vlI~G~G~----vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~ 50 (153)
T 1id1_A 3 KDHFIVCGHSI----LAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDN 50 (153)
T ss_dssp CSCEEEECCSH----HHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTT
T ss_pred CCcEEEECCCH----HHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCC
Confidence 35789999885 3457788888999999888763 5555554433344
No 12
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=53.04 E-value=11 Score=29.04 Aligned_cols=45 Identities=11% Similarity=-0.003 Sum_probs=37.8
Q ss_pred cEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeChHHHHHHHHhhh
Q 032090 86 EILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILN 130 (147)
Q Consensus 86 EvlIIGTG~~~~~l~~~l~~~l~~~GI~vEvM~T~aAcrTyNiL~ 130 (147)
.+++-=||..-..-..++.+.|++.|..|.++=|++|++..+-+.
T Consensus 6 ~IllgvTGaiaa~k~~~ll~~L~~~g~eV~vv~T~~A~~fi~~et 50 (209)
T 3zqu_A 6 RITLAMTGASGAQYGLRLLDCLVQEEREVHFLISKAAQLVMATET 50 (209)
T ss_dssp EEEEEECSSSCHHHHHHHHHHHHHTTCEEEEEECHHHHHHHHHHC
T ss_pred EEEEEEECHHHHHHHHHHHHHHHHCCCEEEEEECccHHHHHHHHh
Confidence 466667888766668899999999999999999999999987654
No 13
>2r7a_A Bacterial heme binding protein; periplasmic binding protein, heme transport, transport protein; HET: HEM; 2.05A {Shigella dysenteriae} PDB: 2rg7_A
Probab=52.49 E-value=45 Score=24.93 Aligned_cols=35 Identities=9% Similarity=0.097 Sum_probs=26.3
Q ss_pred hhcCCCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeC
Q 032090 80 LVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAID 118 (147)
Q Consensus 80 ~l~~~pEvlIIGTG~~~~~l~~~l~~~l~~~GI~vEvM~ 118 (147)
++.-+||+||.... ..+++..+.|++.||.+.+++
T Consensus 55 i~~l~PDLIi~~~~----~~~~~~~~~L~~~gipvv~~~ 89 (256)
T 2r7a_A 55 ILSLRPDSVITWQD----AGPQIVLDQLRAQKVNVVTLP 89 (256)
T ss_dssp HHTTCCSEEEEETT----CSCHHHHHHHHHTTCEEEEEC
T ss_pred HHccCCCEEEEcCC----CCCHHHHHHHHHcCCcEEEec
Confidence 34556999887543 235788999999999988875
No 14
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=51.99 E-value=3.5 Score=38.48 Aligned_cols=54 Identities=9% Similarity=0.131 Sum_probs=36.5
Q ss_pred CCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeChH--------------HHHHHHHhhhhccceeE
Q 032090 84 IPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSR--------------NAASTYNILNEEGRIVA 137 (147)
Q Consensus 84 ~pEvlIIGTG~~~~~l~~~l~~~l~~~GI~vEvM~T~--------------aAcrTyNiL~sEGR~Va 137 (147)
+||++||+||.....---+..+.|++.||.+.|.+.. .+.+.|..+...++.+.
T Consensus 659 ~~DVvLiAtGsev~~EAL~AA~~L~~~GI~vRVVsm~~lf~lqp~~~~~~~ls~~~~~~l~T~e~h~i 726 (845)
T 3ahc_A 659 EVQVVLASAGDVPTQELMAASDALNKMGIKFKVVNVVDLLKLQSRENNDEALTDEEFTELFTADKPVL 726 (845)
T ss_dssp TCSEEEEEESHHHHHHHHHHHHHHHHTTCCEEEEEECBGGGGSCTTTCTTSCCHHHHHHHHCSSSCEE
T ss_pred CCCEEEEEeccHHHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccCHHHhCcEeecCCcce
Confidence 4999999999664333446677899999999885321 14556666666555554
No 15
>3psh_A Protein HI_1472; substrate binding protein, periplasmic binding protein, MOLY binding protein, metal transport; 1.50A {Haemophilus influenzae} PDB: 3psa_A
Probab=49.43 E-value=18 Score=28.28 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=26.8
Q ss_pred hhcCCCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeCh
Q 032090 80 LVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDS 119 (147)
Q Consensus 80 ~l~~~pEvlIIGTG~~~~~l~~~l~~~l~~~GI~vEvM~T 119 (147)
++.-+||+||.+.. .+.+..+.|++.||.+-+++.
T Consensus 80 i~~l~PDlIi~~~~-----~~~~~~~~L~~~Gipvv~~~~ 114 (326)
T 3psh_A 80 LLALKPDVVFVTNY-----APSEMIKQISDVNIPVVAISL 114 (326)
T ss_dssp HHHTCCSEEEEETT-----CCHHHHHHHHTTTCCEEEECS
T ss_pred HHccCCCEEEEeCC-----CChHHHHHHHHcCCCEEEEec
Confidence 34456999887643 257889999999999999864
No 16
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=49.39 E-value=9 Score=26.53 Aligned_cols=37 Identities=14% Similarity=0.224 Sum_probs=30.3
Q ss_pred CCCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeChHH
Q 032090 83 PIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRN 121 (147)
Q Consensus 83 ~~pEvlIIGTG~~~~~l~~~l~~~l~~~GI~vEvM~T~a 121 (147)
+++|++++|. +..+.-+++++...++||.|++.+...
T Consensus 52 ~~~DvvLLgP--QV~y~~~~ik~~~~~~~ipV~vI~~~~ 88 (108)
T 3nbm_A 52 GVYDLIILAP--QVRSYYREMKVDAERLGIQIVATRGME 88 (108)
T ss_dssp GGCSEEEECG--GGGGGHHHHHHHHTTTTCEEEECCHHH
T ss_pred cCCCEEEECh--HHHHHHHHHHHHhhhcCCcEEEeCHHH
Confidence 4589999964 556777889999989999999999754
No 17
>4hn9_A Iron complex transport system substrate-binding P; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.85A {Eubacterium eligens}
Probab=48.84 E-value=18 Score=28.68 Aligned_cols=34 Identities=18% Similarity=0.306 Sum_probs=26.4
Q ss_pred hhcCCCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeCh
Q 032090 80 LVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDS 119 (147)
Q Consensus 80 ~l~~~pEvlIIGTG~~~~~l~~~l~~~l~~~GI~vEvM~T 119 (147)
++.-+||+||...+ .++..+.|++.||.+-+++.
T Consensus 112 i~al~PDLIi~~~~------~~~~~~~L~~~gipvv~~~~ 145 (335)
T 4hn9_A 112 CVAATPDVVFLPMK------LKKTADTLESLGIKAVVVNP 145 (335)
T ss_dssp HHHTCCSEEEEEGG------GHHHHHHHHHTTCCEEEECC
T ss_pred HHhcCCCEEEEeCc------chhHHHHHHHcCCCEEEEcC
Confidence 34456999887653 46888999999999998863
No 18
>2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline protein; choline-binding protein, PCE, phosphorylcholine estera hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae} SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A*
Probab=48.23 E-value=18 Score=30.86 Aligned_cols=40 Identities=10% Similarity=0.281 Sum_probs=31.0
Q ss_pred hhchhhhcCCCcEEEEeecCCC--CCCCHHHHHHHHHcCCeEEE
Q 032090 75 LSIFQLVRPIPEILILGCGRYI--EPVNPELRQFIRSTGMKLEA 116 (147)
Q Consensus 75 l~~l~~l~~~pEvlIIGTG~~~--~~l~~~l~~~l~~~GI~vEv 116 (147)
.+.|+.+. |++.||-+|... ..|++++.+.|+++||.+-.
T Consensus 238 ~~fl~~v~--P~~aiiS~g~~n~~~hP~~evl~~l~~~g~~v~~ 279 (547)
T 2bib_A 238 KDFIKNLS--PSLIVQTSDSLPWKNGVDSEYVNWLKERGIERIN 279 (547)
T ss_dssp HHHHHHHC--CSEEEESBSSCSBSSSBCHHHHHHHHTTTCEEEE
T ss_pred HHHHHhcC--CcEEEEcCCcccccCCCCHHHHHHHHhCCceEEE
Confidence 34545555 889999999763 46899999999999988654
No 19
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=47.17 E-value=15 Score=27.79 Aligned_cols=43 Identities=19% Similarity=0.112 Sum_probs=35.8
Q ss_pred cEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeChHHHHHHHHh
Q 032090 86 EILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNI 128 (147)
Q Consensus 86 EvlIIGTG~~~~~l~~~l~~~l~~~GI~vEvM~T~aAcrTyNi 128 (147)
.+++-=||..-..-..++.+.|++.|+.|.+.=|++|++....
T Consensus 3 ~IllgvTGs~aa~k~~~l~~~L~~~g~~V~vv~T~~A~~~i~~ 45 (189)
T 2ejb_A 3 KIALCITGASGVIYGIKLLQVLEELDFSVDLVISRNAKVVLKE 45 (189)
T ss_dssp EEEEEECSSTTHHHHHHHHHHHHHTTCEEEEEECHHHHHHHHH
T ss_pred EEEEEEECHHHHHHHHHHHHHHHHCCCEEEEEEChhHHHHhhH
Confidence 3667778876555567888999999999999999999998886
No 20
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=43.68 E-value=8.4 Score=34.54 Aligned_cols=34 Identities=15% Similarity=0.484 Sum_probs=26.8
Q ss_pred CcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeCh
Q 032090 85 PEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDS 119 (147)
Q Consensus 85 pEvlIIGTG~~~~~l~~~l~~~l~~~GI~vEvM~T 119 (147)
+|++||++|... ..--+..+.|++.||.+++.+.
T Consensus 563 ~dv~iva~G~~v-~~al~Aa~~L~~~Gi~v~Vv~~ 596 (675)
T 1itz_A 563 PDLIVMGTGSEL-EIAAKAADELRKEGKTVRVVSF 596 (675)
T ss_dssp CSEEEEECGGGH-HHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCEEEEEECHHH-HHHHHHHHHHHhcCCcEEEEEe
Confidence 899999999763 3334566788999999999764
No 21
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=43.68 E-value=10 Score=26.28 Aligned_cols=35 Identities=9% Similarity=0.103 Sum_probs=25.1
Q ss_pred CCCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeC
Q 032090 83 PIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAID 118 (147)
Q Consensus 83 ~~pEvlIIGTG~~~~~l~~~l~~~l~~~GI~vEvM~ 118 (147)
+..|++||++|.... .-.+..+.|++.|+.+.+++
T Consensus 12 ~g~dv~iv~~Gs~~~-~a~eA~~~L~~~Gi~v~vi~ 46 (118)
T 3ju3_A 12 KEADITFVTWGSQKG-PILDVIEDLKEEGISANLLY 46 (118)
T ss_dssp SSCSEEEEEEGGGHH-HHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCEEEEEECccHH-HHHHHHHHHHHCCCceEEEE
Confidence 467999999997632 22345567888899888865
No 22
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=43.21 E-value=7.5 Score=31.30 Aligned_cols=37 Identities=16% Similarity=0.275 Sum_probs=27.2
Q ss_pred hcCCCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeC
Q 032090 81 VRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAID 118 (147)
Q Consensus 81 l~~~pEvlIIGTG~~~~~l~~~l~~~l~~~GI~vEvM~ 118 (147)
+....|++||++|... ..--+..+.|++.||.+++.+
T Consensus 199 ~~~g~dv~iva~G~~~-~~a~~Aa~~L~~~Gi~v~vi~ 235 (324)
T 1umd_B 199 RREGKDLTLICYGTVM-PEVLQAAAELAKAGVSAEVLD 235 (324)
T ss_dssp EECCSSEEEEECGGGH-HHHHHHHHHHHHTTCCEEEEE
T ss_pred EecCCCEEEEEecHHH-HHHHHHHHHHHhcCCCEEEEE
Confidence 3456899999999753 233455677888999988855
No 23
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=42.81 E-value=16 Score=24.42 Aligned_cols=50 Identities=10% Similarity=0.228 Sum_probs=34.1
Q ss_pred CChhhhhchhhhcCCCcEEEEeecCC---CCCCCHHHHHHHHHcCCeEEEeCh
Q 032090 70 ITPNCLSIFQLVRPIPEILILGCGRY---IEPVNPELRQFIRSTGMKLEAIDS 119 (147)
Q Consensus 70 l~~e~l~~l~~l~~~pEvlIIGTG~~---~~~l~~~l~~~l~~~GI~vEvM~T 119 (147)
++++.-+.+.-+-....|+|++++.. .......++++|.++||.++..+.
T Consensus 3 ~s~~~~~~v~~~i~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI 55 (109)
T 3ipz_A 3 LTPQLKDTLEKLVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNI 55 (109)
T ss_dssp CCHHHHHHHHHHHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEG
T ss_pred CCHHHHHHHHHHHccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEEC
Confidence 44443333333334567999998853 245567899999999999998665
No 24
>2r79_A Periplasmic binding protein; heme transport, transport prote; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=41.58 E-value=37 Score=25.97 Aligned_cols=35 Identities=20% Similarity=0.332 Sum_probs=26.2
Q ss_pred hhcCCCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeC
Q 032090 80 LVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAID 118 (147)
Q Consensus 80 ~l~~~pEvlIIGTG~~~~~l~~~l~~~l~~~GI~vEvM~ 118 (147)
++.-+||+||.... .-+++..+.|++.||.+-+++
T Consensus 55 i~~l~PDLIi~~~~----~~~~~~~~~L~~~gipvv~~~ 89 (283)
T 2r79_A 55 VLALRPDILIGTEE----MGPPPVLKQLEGAGVRVETLS 89 (283)
T ss_dssp HHTTCCSEEEECTT----CCCHHHHHHHHHTTCCEEECC
T ss_pred HHhcCCCEEEEeCc----cCcHHHHHHHHHcCCcEEEec
Confidence 34556999887542 135788999999999998874
No 25
>4gxw_A Adenosine deaminase; amidohydrolase, COG1816, EFI, structural genomics, hydrolase; 1.30A {Burkholderia ambifaria}
Probab=41.18 E-value=14 Score=30.87 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=26.0
Q ss_pred EeecCCCCCCCHHHHHHHHHcCCeEEEeChHH
Q 032090 90 LGCGRYIEPVNPELRQFIRSTGMKLEAIDSRN 121 (147)
Q Consensus 90 IGTG~~~~~l~~~l~~~l~~~GI~vEvM~T~a 121 (147)
||-|-.. .-+|++.+.++++||.+|+.+|.+
T Consensus 239 IgHG~~~-~~d~~L~~~l~~~~I~lEvCP~SN 269 (380)
T 4gxw_A 239 VDHGYTI-VDNPELCARYAERGIVFTVVPTNS 269 (380)
T ss_dssp EEECGGG-GGCHHHHHHHHHHTCEEEECTTCH
T ss_pred cccceee-ccChHHHHHHHHhCceeEECCcch
Confidence 6666553 357999999999999999999987
No 26
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=39.69 E-value=9.5 Score=34.63 Aligned_cols=35 Identities=6% Similarity=0.332 Sum_probs=26.6
Q ss_pred CcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeChH
Q 032090 85 PEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSR 120 (147)
Q Consensus 85 pEvlIIGTG~~~~~l~~~l~~~l~~~GI~vEvM~T~ 120 (147)
+|+.||++|... ..--+..+.|++.||.++|.|..
T Consensus 585 ~dvtiia~G~~v-~~al~Aa~~L~~~Gi~~~VVd~~ 619 (700)
T 3rim_A 585 PDVILIATGSEV-QLAVAAQTLLADNDILARVVSMP 619 (700)
T ss_dssp CSEEEEECGGGH-HHHHHHHHHHHTTTCCEEEEECS
T ss_pred CCEEEEEechHH-HHHHHHHHHHHhcCCCeEEEEec
Confidence 699999999753 23335667899999999997654
No 27
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=39.53 E-value=9.1 Score=34.23 Aligned_cols=34 Identities=15% Similarity=0.379 Sum_probs=26.8
Q ss_pred CcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeCh
Q 032090 85 PEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDS 119 (147)
Q Consensus 85 pEvlIIGTG~~~~~l~~~l~~~l~~~GI~vEvM~T 119 (147)
+|++||++|... ..--+..+.|++.||.+++.+.
T Consensus 550 ~dv~iva~G~~v-~~al~Aa~~L~~~Gi~~~Vv~~ 583 (669)
T 2r8o_A 550 PELIFIATGSEV-ELAVAAYEKLTAEGVKARVVSM 583 (669)
T ss_dssp CSEEEEECGGGH-HHHHHHHHHHHHHTCCEEEEEC
T ss_pred CCEEEEEECHHH-HHHHHHHHHHHhcCCCeEEEEe
Confidence 899999999753 3344566788999999999764
No 28
>1n2z_A Vitamin B12 transport protein BTUF; HET: CNC PG4; 2.00A {Escherichia coli} SCOP: c.92.2.2 PDB: 2qi9_F* 4dbl_E 1n4a_A* 1n4d_A
Probab=39.39 E-value=33 Score=25.57 Aligned_cols=34 Identities=24% Similarity=0.260 Sum_probs=25.5
Q ss_pred hcCCCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeC
Q 032090 81 VRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAID 118 (147)
Q Consensus 81 l~~~pEvlIIGTG~~~~~l~~~l~~~l~~~GI~vEvM~ 118 (147)
+.-+||+||.... ..+.+..+.|++.||.+-+++
T Consensus 54 ~~l~PDLIi~~~~----~~~~~~~~~L~~~gipvv~~~ 87 (245)
T 1n2z_A 54 VALKPDLVIAWRG----GNAERQVDQLASLGIKVMWVD 87 (245)
T ss_dssp HHTCCSEEEECTT----TSCHHHHHHHHHHTCCEEECC
T ss_pred hccCCCEEEEeCC----CCcHHHHHHHHHCCCcEEEeC
Confidence 3456999887421 245788999999999998876
No 29
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=39.00 E-value=10 Score=34.22 Aligned_cols=35 Identities=11% Similarity=0.344 Sum_probs=26.5
Q ss_pred CcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeChH
Q 032090 85 PEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSR 120 (147)
Q Consensus 85 pEvlIIGTG~~~~~l~~~l~~~l~~~GI~vEvM~T~ 120 (147)
+|+.||++|... ..--+..+.|++.||.+++.|.+
T Consensus 577 ~dvtiia~G~~v-~~Al~Aa~~L~~~GI~~~Vid~~ 611 (690)
T 3m49_A 577 ADVILLATGSEV-SLAVEAQKALAVDGVDASVVSMP 611 (690)
T ss_dssp CSEEEEECTTHH-HHHHHHHHHHHHTTCCEEEEECS
T ss_pred CCEEEEEechHH-HHHHHHHHHHHhcCCCeEEEecc
Confidence 699999999643 23345667899999999996654
No 30
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=38.67 E-value=9.5 Score=30.73 Aligned_cols=38 Identities=18% Similarity=0.308 Sum_probs=27.7
Q ss_pred hhcCCCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeC
Q 032090 80 LVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAID 118 (147)
Q Consensus 80 ~l~~~pEvlIIGTG~~~~~l~~~l~~~l~~~GI~vEvM~ 118 (147)
.+....|++||++|... ..--+..+.|++.||.+++.+
T Consensus 197 ~~~~g~dv~iva~G~~~-~~a~~Aa~~L~~~Gi~v~vi~ 234 (324)
T 1w85_B 197 IKREGKDITIIAYGAMV-HESLKAAAELEKEGISAEVVD 234 (324)
T ss_dssp EEECCSSEEEEECTTHH-HHHHHHHHHHHHTTCCEEEEE
T ss_pred EEecCCCEEEEEecHHH-HHHHHHHHHHHhcCCCEEEEE
Confidence 34456899999999763 233456677888999988855
No 31
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=38.39 E-value=10 Score=33.71 Aligned_cols=34 Identities=12% Similarity=0.404 Sum_probs=26.9
Q ss_pred CcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeCh
Q 032090 85 PEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDS 119 (147)
Q Consensus 85 pEvlIIGTG~~~~~l~~~l~~~l~~~GI~vEvM~T 119 (147)
+|++||++|... ..--+..+.|++.||.+++.+.
T Consensus 542 ~dv~iva~G~~v-~~al~Aa~~L~~~Gi~~~Vv~~ 575 (651)
T 2e6k_A 542 PQGVLVATGSEV-HLALRAQALLREKGVRVRVVSL 575 (651)
T ss_dssp CSEEEEECTTHH-HHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCEEEEEECHHH-HHHHHHHHHHHhcCCcEEEEec
Confidence 899999999753 3334566789999999999774
No 32
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=38.28 E-value=10 Score=33.84 Aligned_cols=35 Identities=11% Similarity=0.153 Sum_probs=26.5
Q ss_pred CCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeCh
Q 032090 84 IPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDS 119 (147)
Q Consensus 84 ~pEvlIIGTG~~~~~l~~~l~~~l~~~GI~vEvM~T 119 (147)
..|+.||++|... ..--+..+.|++.||.++|.|.
T Consensus 525 g~dvtiia~G~~v-~~al~Aa~~L~~~Gi~~~Vi~~ 559 (632)
T 3l84_A 525 EAKFTLLASGSEV-WLCLESANELEKQGFACNVVSM 559 (632)
T ss_dssp TCSEEEEECGGGH-HHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCEEEEEechHH-HHHHHHHHHHHhcCCCeEEEec
Confidence 6899999999642 2334556789999999999654
No 33
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=37.93 E-value=27 Score=22.80 Aligned_cols=37 Identities=16% Similarity=0.293 Sum_probs=29.1
Q ss_pred CcEEEEeecCC---CCCCCHHHHHHHHHcCCeEEEeChHH
Q 032090 85 PEILILGCGRY---IEPVNPELRQFIRSTGMKLEAIDSRN 121 (147)
Q Consensus 85 pEvlIIGTG~~---~~~l~~~l~~~l~~~GI~vEvM~T~a 121 (147)
..++|+.+|.. .......++.+|.++||.++..+...
T Consensus 17 ~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~ 56 (105)
T 2yan_A 17 ASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILE 56 (105)
T ss_dssp SSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGG
T ss_pred CCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCC
Confidence 46899988763 34667789999999999988877654
No 34
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Probab=37.87 E-value=77 Score=23.98 Aligned_cols=51 Identities=16% Similarity=0.154 Sum_probs=34.4
Q ss_pred CCcEEEEeecCCCC-CC-CHHHHHHHHHcCCeEEEeChHHHHHHHHhhhh-ccc
Q 032090 84 IPEILILGCGRYIE-PV-NPELRQFIRSTGMKLEAIDSRNAASTYNILNE-EGR 134 (147)
Q Consensus 84 ~pEvlIIGTG~~~~-~l-~~~l~~~l~~~GI~vEvM~T~aAcrTyNiL~s-EGR 134 (147)
++..||+|.-.... .+ -.+-.+.|++.||.|++|+-+.-..-|+.-+. .+|
T Consensus 110 gI~rVV~~~~d~~~~~p~~~~g~~~L~~aGI~V~~~~~~e~~~~w~~fv~~~~~ 163 (190)
T 2nyt_A 110 NLRLLILVGRLFMWEEPEIQAALKKLKEAGCKLRIMKPQDFEYVWQNFVEQEEG 163 (190)
T ss_pred CccEEEEEeecCCcCChHHHHHHHHHHHCCCEEEEecHHHHHHHHHHHHHccCC
Confidence 78889998754321 11 12566789999999999998765555555555 444
No 35
>2q8p_A Iron-regulated surface determinant E; helical backbone metal receptor superfamily, metal transport; HET: HEM; 1.95A {Staphylococcus aureus subsp} PDB: 2q8q_A*
Probab=37.73 E-value=20 Score=26.94 Aligned_cols=33 Identities=18% Similarity=0.218 Sum_probs=24.5
Q ss_pred hcCCCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeC
Q 032090 81 VRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAID 118 (147)
Q Consensus 81 l~~~pEvlIIGTG~~~~~l~~~l~~~l~~~GI~vEvM~ 118 (147)
+.-+||+||...+ .++++.+.|++.||.+.+++
T Consensus 57 ~~l~PDLIi~~~~-----~~~~~~~~L~~~gipvv~~~ 89 (260)
T 2q8p_A 57 KKLKPTHVLSVST-----IKDEMQPFYKQLNMKGYFYD 89 (260)
T ss_dssp HHTCCSEEEEEGG-----GHHHHHHHHHHHTSCCEEEC
T ss_pred HhcCCCEEEecCc-----cCHHHHHHHHHcCCcEEEec
Confidence 3446999887643 24678899999999987765
No 36
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=36.59 E-value=28 Score=26.37 Aligned_cols=45 Identities=13% Similarity=0.119 Sum_probs=36.8
Q ss_pred CcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeChHHHHHHHHhh
Q 032090 85 PEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNIL 129 (147)
Q Consensus 85 pEvlIIGTG~~~~~l~~~l~~~l~~~GI~vEvM~T~aAcrTyNiL 129 (147)
.-+++.=||..-..-.+++.+.|++.|+.|.+.=|++|.+...-+
T Consensus 9 k~IllgvTGs~aa~k~~~l~~~L~~~g~~V~vv~T~~A~~fi~~~ 53 (194)
T 1p3y_1 9 KKLLIGICGSISSVGISSYLLYFKSFFKEIRVVMTKTAEDLIPAH 53 (194)
T ss_dssp CEEEEEECSCGGGGGTHHHHHHHTTTSSEEEEEECHHHHHHSCHH
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHHCCCEEEEEEchhHHHHHHHH
Confidence 367777888885556789999999999999999999999875543
No 37
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=35.63 E-value=8.6 Score=34.50 Aligned_cols=34 Identities=15% Similarity=0.405 Sum_probs=26.8
Q ss_pred CcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeCh
Q 032090 85 PEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDS 119 (147)
Q Consensus 85 pEvlIIGTG~~~~~l~~~l~~~l~~~GI~vEvM~T 119 (147)
+|++||++|... ..--+..+.|++.||.+++.|.
T Consensus 555 ~dvtiva~G~~v-~~al~Aa~~L~~~Gi~~~Vvd~ 588 (680)
T 1gpu_A 555 PDIILVATGSEV-SLSVEAAKTLAAKNIKARVVSL 588 (680)
T ss_dssp CSEEEEECTHHH-HHHHHHHHHHHTTTCCEEEEEC
T ss_pred CCEEEEEEcHHH-HHHHHHHHHHHhcCCCEEEEEc
Confidence 899999999753 3344566788999999999764
No 38
>3lgd_A Adenosine deaminase CECR1; TIM barrel, dimerization and receptor binding domains, glyco hydrolase, growth factor, secreted; HET: NAG; 2.00A {Homo sapiens} PDB: 3lgg_A*
Probab=34.80 E-value=27 Score=30.52 Aligned_cols=37 Identities=16% Similarity=0.291 Sum_probs=29.5
Q ss_pred CCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeChHHHH
Q 032090 84 IPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAA 123 (147)
Q Consensus 84 ~pEvlIIGTG~~~~~l~~~l~~~l~~~GI~vEvM~T~aAc 123 (147)
+++- ||-|-.... +|++.+.++++||.+|+.+|.+-.
T Consensus 352 ga~R--IgHGv~l~~-dp~l~~~l~~~~I~levCP~SN~~ 388 (508)
T 3lgd_A 352 NTTR--IGHGFALSK-HPAVRTYSWKKDIPIEVCPISNQV 388 (508)
T ss_dssp TCSS--EEECTTGGG-CHHHHHHHHHTTCCEEECHHHHHH
T ss_pred CCce--eeeeEecCc-cHHHHHHHHhcCCeEEECcchHHH
Confidence 3553 588876543 799999999999999999988753
No 39
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=34.25 E-value=32 Score=23.56 Aligned_cols=32 Identities=25% Similarity=0.448 Sum_probs=23.7
Q ss_pred CcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeChH
Q 032090 85 PEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSR 120 (147)
Q Consensus 85 pEvlIIGTG~~~~~l~~~l~~~l~~~GI~vEvM~T~ 120 (147)
--++|+|.|. +-..+.+.|.+.|..+-+.+..
T Consensus 8 ~~viIiG~G~----~G~~la~~L~~~g~~v~vid~~ 39 (140)
T 3fwz_A 8 NHALLVGYGR----VGSLLGEKLLASDIPLVVIETS 39 (140)
T ss_dssp SCEEEECCSH----HHHHHHHHHHHTTCCEEEEESC
T ss_pred CCEEEECcCH----HHHHHHHHHHHCCCCEEEEECC
Confidence 4699999985 3446777888888888777654
No 40
>1wdi_A Hypothetical protein TT0907; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; HET: CIT; 2.10A {Thermus thermophilus} SCOP: e.53.1.1
Probab=34.05 E-value=65 Score=26.96 Aligned_cols=43 Identities=30% Similarity=0.412 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHHHcCCeEEEeC---------------------------hHHHHHHHHhhhhccceeEEE
Q 032090 97 EPVNPELRQFIRSTGMKLEAID---------------------------SRNAASTYNILNEEGRIVAAA 139 (147)
Q Consensus 97 ~~l~~~l~~~l~~~GI~vEvM~---------------------------T~aAcrTyNiL~sEGR~VaAa 139 (147)
...++++.+.|+++||.+.... ++++|+.-|.-.++|++|+|.
T Consensus 187 LHFt~~Ll~~L~~kGv~~a~vTLHVG~GTF~PV~e~i~~H~MHsE~~~V~~~ta~~in~aka~G~RViAV 256 (345)
T 1wdi_A 187 LHFTPELLERLREMGVELRFLTLHVGPGTFRPVKGDPEKHEMHAEPYAIPEEVAEAVNRAKAEGRRVVAV 256 (345)
T ss_dssp GGCCHHHHHHHHHTTCEEEEEEEEESGGGCCC---------CCCEEEEECHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCHHHHHHHHHCCCeEEEEEEeecCCCCcccccchhcCCccceEEEECHHHHHHHHHHHHcCCeEEEE
Confidence 4567788888888888765421 467889999999999999884
No 41
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=33.58 E-value=38 Score=26.81 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=27.0
Q ss_pred CcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeChHHH
Q 032090 85 PEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNA 122 (147)
Q Consensus 85 pEvlIIGTG~~~~~l~~~l~~~l~~~GI~vEvM~T~aA 122 (147)
+.+||+| |.+...-...+.+.|++.|+.|+++++...
T Consensus 5 ~~vLiV~-g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~ 41 (259)
T 3rht_A 5 TRVLYCG-DTSLETAAGYLAGLMTSWQWEFDYIPSHVG 41 (259)
T ss_dssp -CEEEEE-SSCTTTTHHHHHHHHHHTTCCCEEECTTSC
T ss_pred ceEEEEC-CCCchhHHHHHHHHHHhCCceEEEeccccc
Confidence 5788886 554334446688899999999999986643
No 42
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=33.41 E-value=12 Score=30.68 Aligned_cols=38 Identities=18% Similarity=0.244 Sum_probs=27.2
Q ss_pred hhcCCCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeC
Q 032090 80 LVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAID 118 (147)
Q Consensus 80 ~l~~~pEvlIIGTG~~~~~l~~~l~~~l~~~GI~vEvM~ 118 (147)
.+....|++||++|... ..--+..+.|++.||.+++.+
T Consensus 212 v~~~g~dv~iia~Gs~~-~~a~~Aa~~L~~~Gi~v~vv~ 249 (341)
T 2ozl_B 212 IERQGTHITVVSHSRPV-GHCLEAAAVLSKEGVECEVIN 249 (341)
T ss_dssp EEECCSSEEEEECSTHH-HHHHHHHHHHHTTTCCEEEEE
T ss_pred EeccCCCEEEEEeCHHH-HHHHHHHHHHHhcCCCeEEEe
Confidence 34456899999999763 223455667888899888754
No 43
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=33.13 E-value=1e+02 Score=20.63 Aligned_cols=37 Identities=22% Similarity=0.169 Sum_probs=26.5
Q ss_pred cCCCcEEEEe-----ecCC--CCCCCHHHHHHHHHcCCeEEEeC
Q 032090 82 RPIPEILILG-----CGRY--IEPVNPELRQFIRSTGMKLEAID 118 (147)
Q Consensus 82 ~~~pEvlIIG-----TG~~--~~~l~~~l~~~l~~~GI~vEvM~ 118 (147)
+.+++.||+| -|.. ...--.+..+.|+++++.|+..|
T Consensus 49 e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~~lpV~~~D 92 (98)
T 1iv0_A 49 REGLGKLVVGLPLRTDLKESAQAGKVLPLVEALRARGVEVELWD 92 (98)
T ss_dssp HHTCCEEEEECCCCCCSSSCCCSSTTHHHHHHHHHTTCEEEEEC
T ss_pred HcCCCEEEEeeccCCCCCcCHHHHHHHHHHHHHhcCCCCEEEEC
Confidence 3479999999 4544 33555677777777788888765
No 44
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=33.07 E-value=32 Score=26.19 Aligned_cols=43 Identities=19% Similarity=0.203 Sum_probs=35.1
Q ss_pred EEEEeecCCCCCCCHHHHHHHHHc-CCeEEEeChHHHHHHHHhh
Q 032090 87 ILILGCGRYIEPVNPELRQFIRST-GMKLEAIDSRNAASTYNIL 129 (147)
Q Consensus 87 vlIIGTG~~~~~l~~~l~~~l~~~-GI~vEvM~T~aAcrTyNiL 129 (147)
+++-=||..-..-..++.+.|++. |..|.+.=|++|++...-+
T Consensus 3 IllgvTGsiaa~k~~~ll~~L~~~~g~~V~vv~T~~A~~fi~~~ 46 (197)
T 1sbz_A 3 LIVGMTGATGAPLGVALLQALREMPNVETHLVMSKWAKTTIELE 46 (197)
T ss_dssp EEEEECSSSCHHHHHHHHHHHHTCTTCEEEEEECHHHHHHHHHH
T ss_pred EEEEEeChHHHHHHHHHHHHHHhccCCEEEEEECchHHHHhHHH
Confidence 455557776555578889999998 9999999999999998865
No 45
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=32.98 E-value=12 Score=30.48 Aligned_cols=37 Identities=19% Similarity=0.389 Sum_probs=26.8
Q ss_pred hcCCCcEEEEeecCCCCCCCHHHHHHHHHc-CCeEEEeC
Q 032090 81 VRPIPEILILGCGRYIEPVNPELRQFIRST-GMKLEAID 118 (147)
Q Consensus 81 l~~~pEvlIIGTG~~~~~l~~~l~~~l~~~-GI~vEvM~ 118 (147)
+....|++||++|... ..--+..+.|++. ||.+++.+
T Consensus 216 ~~~g~dv~iia~G~~~-~~a~~Aa~~L~~~~Gi~v~vi~ 253 (342)
T 2bfd_B 216 IQEGSDVTLVAWGTQV-HVIREVASMAKEKLGVSCEVID 253 (342)
T ss_dssp EECCSSEEEEECTTHH-HHHHHHHHHHHHHHCCCEEEEE
T ss_pred eccCCCEEEEEECHHH-HHHHHHHHHHHhhcCCCEEEEe
Confidence 4456899999999753 2334556677777 99988855
No 46
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=32.97 E-value=12 Score=33.96 Aligned_cols=34 Identities=9% Similarity=0.262 Sum_probs=25.7
Q ss_pred CcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeCh
Q 032090 85 PEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDS 119 (147)
Q Consensus 85 pEvlIIGTG~~~~~l~~~l~~~l~~~GI~vEvM~T 119 (147)
.|+.||++|... ..--+..+.|++.||.++|.|.
T Consensus 598 ~dvtiia~G~~v-~~al~Aa~~L~~~GI~~~Vid~ 631 (711)
T 3uk1_A 598 RKIILIATGSEV-ELAMKAVEPLAQQGIAARVVSM 631 (711)
T ss_dssp EEEEEEECTTHH-HHHHHHHHHHHHTTEEEEEEEC
T ss_pred CCEEEEEecHHH-HHHHHHHHHHHHcCCCeEEEec
Confidence 899999999743 2223556779999999999654
No 47
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=32.88 E-value=31 Score=26.50 Aligned_cols=42 Identities=14% Similarity=-0.046 Sum_probs=28.3
Q ss_pred cEEEEeecCCCCCC-CHHHHHHHHHcCCeEEEeChHHHHHHHH
Q 032090 86 EILILGCGRYIEPV-NPELRQFIRSTGMKLEAIDSRNAASTYN 127 (147)
Q Consensus 86 EvlIIGTG~~~~~l-~~~l~~~l~~~GI~vEvM~T~aAcrTyN 127 (147)
.+++-=||.....- ..++.+.|++.|..|.+.=|++|+++.+
T Consensus 7 ~IllgiTGsiaayk~~~~ll~~L~~~g~eV~vv~T~~A~~vl~ 49 (207)
T 3mcu_A 7 RIGFGFTGSHCTYEEVMPHLEKLIAEGAEVRPVVSYTVQSTNT 49 (207)
T ss_dssp EEEEEECSCGGGGTTSHHHHHHHHHTTCEEEEEECC-------
T ss_pred EEEEEEEChHHHHHHHHHHHHHHHhCCCEEEEEEehHHHHHHH
Confidence 46666677654444 7899999999999999999999995543
No 48
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genom 2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=32.87 E-value=74 Score=21.42 Aligned_cols=40 Identities=8% Similarity=0.188 Sum_probs=31.1
Q ss_pred hhhcCCCcEEEEe-ecCCC-CCCCHHHHHHHHHcCCeEEEeC
Q 032090 79 QLVRPIPEILILG-CGRYI-EPVNPELRQFIRSTGMKLEAID 118 (147)
Q Consensus 79 ~~l~~~pEvlIIG-TG~~~-~~l~~~l~~~l~~~GI~vEvM~ 118 (147)
+.+...=+++++- .|... --...++.+.+++.||.+|+.+
T Consensus 74 ~~~~~G~~V~~l~d~GdP~i~~~~~~l~~~~~~~gi~v~viP 115 (117)
T 3hh1_A 74 ELLEEGSDVALVTDAGTPAISDPGYTMASAAHAAGLPVVPVP 115 (117)
T ss_dssp HHHHTTCCEEEEEETTSCGGGSTTHHHHHHHHHTTCCEEEEC
T ss_pred HHHHCCCeEEEEecCCcCeEeccHHHHHHHHHHCCCcEEEeC
Confidence 3444445888888 79884 4577889999999999999875
No 49
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=32.60 E-value=56 Score=21.42 Aligned_cols=36 Identities=17% Similarity=0.293 Sum_probs=29.0
Q ss_pred CcEEEEeecCC---CCCCCHHHHHHHHHcCCeEEEeChH
Q 032090 85 PEILILGCGRY---IEPVNPELRQFIRSTGMKLEAIDSR 120 (147)
Q Consensus 85 pEvlIIGTG~~---~~~l~~~l~~~l~~~GI~vEvM~T~ 120 (147)
..++|+.+|.. .......++++|.++||.++..+..
T Consensus 15 ~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~ 53 (109)
T 1wik_A 15 ASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDIL 53 (109)
T ss_dssp SSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESS
T ss_pred CCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECC
Confidence 46999988753 4567789999999999999887654
No 50
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=32.04 E-value=17 Score=24.73 Aligned_cols=30 Identities=10% Similarity=0.042 Sum_probs=22.7
Q ss_pred EEEeecCCCCCCCHHHHHHHHHcCCeEEEe
Q 032090 88 LILGCGRYIEPVNPELRQFIRSTGMKLEAI 117 (147)
Q Consensus 88 lIIGTG~~~~~l~~~l~~~l~~~GI~vEvM 117 (147)
++-|+|-...++-..+++.++++|+.+++-
T Consensus 8 l~Cg~G~sTS~l~~k~~~~~~~~gi~~~i~ 37 (106)
T 1e2b_A 8 LFSSAGMSTSLLVSKMRAQAEKYEVPVIIE 37 (106)
T ss_dssp EECSSSTTTHHHHHHHHHHHHHSCCSEEEE
T ss_pred EECCCchhHHHHHHHHHHHHHHCCCCeEEE
Confidence 445666665566779999999999987764
No 51
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=31.93 E-value=19 Score=27.85 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=24.0
Q ss_pred CcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeCh
Q 032090 85 PEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDS 119 (147)
Q Consensus 85 pEvlIIGTG~~~~~l~~~l~~~l~~~GI~vEvM~T 119 (147)
.||+|||-|-.- -.+...|.++|+.|-+.+-
T Consensus 5 yDViIVGaGpaG----l~~A~~La~~G~~V~v~Er 35 (397)
T 3oz2_A 5 YDVLVVGGGPGG----STAARYAAKYGLKTLMIEK 35 (397)
T ss_dssp EEEEEECCSHHH----HHHHHHHHHTTCCEEEECS
T ss_pred CCEEEECcCHHH----HHHHHHHHHCCCcEEEEeC
Confidence 699999999542 2456689999999988763
No 52
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=30.94 E-value=20 Score=23.02 Aligned_cols=30 Identities=17% Similarity=0.453 Sum_probs=19.4
Q ss_pred EEEEeecCC----CCCCCHHHHHHHHHcCCeEEE
Q 032090 87 ILILGCGRY----IEPVNPELRQFIRSTGMKLEA 116 (147)
Q Consensus 87 vlIIGTG~~----~~~l~~~l~~~l~~~GI~vEv 116 (147)
.||-|.|.. ...+-+.+.++|++.++.++.
T Consensus 38 ~II~GkG~hS~~g~~~Lk~~V~~~L~~~~~~~~e 71 (82)
T 3fau_A 38 SVITGRGNHSQGGVARIKPAVIKYLISHSFRFSE 71 (82)
T ss_dssp EEECCC---------CHHHHHHHHHHHTTCCEEE
T ss_pred EEEECCCCCCCCCcchHHHHHHHHHHhCCCceee
Confidence 355566652 234778999999999998854
No 53
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=30.32 E-value=44 Score=27.73 Aligned_cols=39 Identities=21% Similarity=0.322 Sum_probs=23.6
Q ss_pred hhhhchhhhcCCCcEEEEeecCCCCCCC----HHHHHHHHHcCCeE
Q 032090 73 NCLSIFQLVRPIPEILILGCGRYIEPVN----PELRQFIRSTGMKL 114 (147)
Q Consensus 73 e~l~~l~~l~~~pEvlIIGTG~~~~~l~----~~l~~~l~~~GI~v 114 (147)
.+++. .+..+||++|||+-...-+++ +.+.+. .++|+.|
T Consensus 64 ~~l~~--al~~~~d~lvig~a~~gG~l~~~~~~~i~~A-l~~G~~V 106 (349)
T 2obn_A 64 KSVEA--ALEYKPQVLVIGIAPKGGGIPDDYWIELKTA-LQAGMSL 106 (349)
T ss_dssp SSHHH--HGGGCCSEEEECCCCCCC-SCGGGHHHHHHH-HHTTCEE
T ss_pred CCHHH--HHhCCCCEEEEEecCCCCCCCHHHHHHHHHH-HHcCCcE
Confidence 55553 445679999999944334455 333333 3688887
No 54
>1vky_A S-adenosylmethionine:tRNA ribosyltransferase-ISOM; TM0574, struct genomics, JCSG, protein structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: e.53.1.1
Probab=29.99 E-value=69 Score=26.83 Aligned_cols=43 Identities=16% Similarity=0.319 Sum_probs=34.6
Q ss_pred CCCCHHHHHHHHHcCCeEEEeC----------------------------hHHHHHHHHhhhhccceeEEE
Q 032090 97 EPVNPELRQFIRSTGMKLEAID----------------------------SRNAASTYNILNEEGRIVAAA 139 (147)
Q Consensus 97 ~~l~~~l~~~l~~~GI~vEvM~----------------------------T~aAcrTyNiL~sEGR~VaAa 139 (147)
...++++.+.|+++||.+.... ++++|+.-|.-.++|++|+|.
T Consensus 189 LHFt~eLL~~L~~kGv~~a~vTLHVG~GTF~PV~~edi~~H~MHsE~~~V~~eta~~in~aka~G~RViAV 259 (347)
T 1vky_A 189 LHFTPELIEKLKKKGVQFAEVVLHVGIGTFRPVKVEEVEKHKMHEEFYQVPKETVRKLRETRERGNRIVAV 259 (347)
T ss_dssp GGCCHHHHHHHHHHTCEEEEEEEEC------------------CCCEEEECHHHHHHHHHHHHHTCCEEEE
T ss_pred CCCCHHHHHHHHHCCCcEEEEEEeecCCCCCCccccccccCCcccEEEEECHHHHHHHHHHHHcCCeEEEE
Confidence 4678899999999999865521 467888889888999999874
No 55
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=29.34 E-value=41 Score=22.63 Aligned_cols=32 Identities=22% Similarity=0.346 Sum_probs=24.1
Q ss_pred CcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeChH
Q 032090 85 PEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSR 120 (147)
Q Consensus 85 pEvlIIGTG~~~~~l~~~l~~~l~~~GI~vEvM~T~ 120 (147)
..++|+|.|. +-..+.+.|.++|..|-+.+..
T Consensus 7 ~~v~I~G~G~----iG~~la~~L~~~g~~V~~id~~ 38 (141)
T 3llv_A 7 YEYIVIGSEA----AGVGLVRELTAAGKKVLAVDKS 38 (141)
T ss_dssp CSEEEECCSH----HHHHHHHHHHHTTCCEEEEESC
T ss_pred CEEEEECCCH----HHHHHHHHHHHCCCeEEEEECC
Confidence 4689999875 4557788888888888777653
No 56
>1yy3_A S-adenosylmethionine:tRNA ribosyltransferase- isomerase; beta-barrel, QUEA, quein queuosine, tRNA- modification; 2.88A {Bacillus subtilis}
Probab=29.09 E-value=72 Score=26.68 Aligned_cols=43 Identities=23% Similarity=0.370 Sum_probs=35.0
Q ss_pred CCCCHHHHHHHHHcCCeEEEeC----------------------------hHHHHHHHHhhhhccceeEEE
Q 032090 97 EPVNPELRQFIRSTGMKLEAID----------------------------SRNAASTYNILNEEGRIVAAA 139 (147)
Q Consensus 97 ~~l~~~l~~~l~~~GI~vEvM~----------------------------T~aAcrTyNiL~sEGR~VaAa 139 (147)
...++++.+.|+++||.+.... ++++|+.-|.-.++|++|+|.
T Consensus 186 LHFt~eLl~~L~~kGv~~a~vTLHVG~GTF~PV~~e~i~~H~MHsE~~~V~~~ta~~in~aka~G~RViAV 256 (346)
T 1yy3_A 186 LHFTEEILQQLKDKGVQIEFITLHVGLGTFRPVSADEVEEHNMHAEFYQMSEETAAALNKVRENGGRIISV 256 (346)
T ss_dssp TCCCHHHHHHHHHHTEEEEECEEESGGGGGC-----------CCCEEEEECHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCHHHHHHHHHCCCeEEEEEEeecCCCCCCccccccccCCcccEEEEECHHHHHHHHHHHHcCCeEEEE
Confidence 5678999999999998865521 467899999999999999884
No 57
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*
Probab=28.93 E-value=1.9e+02 Score=23.66 Aligned_cols=76 Identities=18% Similarity=0.135 Sum_probs=38.4
Q ss_pred eCCcEEEcCEEEeeeEEEeCCceecCCCC----CCCCCChhhhhchhhhcCCCcEEEEeecCCCCCCCHHHHHHHHHcCC
Q 032090 37 TDTGFTVNGVQYEGSLLCIGNLLLSWTPK----KFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTGM 112 (147)
Q Consensus 37 ~~g~f~Ing~~y~gsviv~p~~v~~W~~~----~~~~l~~e~l~~l~~l~~~pEvlIIGTG~~~~~l~~~l~~~l~~~GI 112 (147)
+...+.++|..+..+-+|.-.+..+..+. ...-++.+++..+... ..-.++|||.|.. --++...|++.|.
T Consensus 119 ~~~~v~v~g~~~~~d~lViATGs~p~~p~gi~~~~~v~~~~~~~~l~~~-~~~~vvViGgG~~----g~e~A~~l~~~g~ 193 (464)
T 2eq6_A 119 GPKEVEVGGERYGAKSLILATGSEPLELKGFPFGEDVWDSTRALKVEEG-LPKRLLVIGGGAV----GLELGQVYRRLGA 193 (464)
T ss_dssp ETTEEEETTEEEEEEEEEECCCEEECCBTTBCCSSSEECHHHHTCGGGC-CCSEEEEECCSHH----HHHHHHHHHHTTC
T ss_pred cCCEEEEccEEEEeCEEEEcCCCCCCCCCCCCCCCcEEcHHHHHhhhhh-cCCEEEEECCCHH----HHHHHHHHHHCCC
Confidence 45567776777776655554443322221 1112344443322210 2247999998842 2345556666666
Q ss_pred eEEEe
Q 032090 113 KLEAI 117 (147)
Q Consensus 113 ~vEvM 117 (147)
.|.+.
T Consensus 194 ~Vtlv 198 (464)
T 2eq6_A 194 EVTLI 198 (464)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 65553
No 58
>1r61_A Metal-dependent hydrolase; zinc-dependent hydrolase, structural genomics, cyclase, PSI, protein structure initiative; 2.50A {Geobacillus stearothermophilus} SCOP: c.8.8.1 PDB: 3krv_A
Probab=28.64 E-value=47 Score=25.09 Aligned_cols=50 Identities=10% Similarity=0.199 Sum_probs=36.2
Q ss_pred CCChhhhhchhhhcCCCcEEEEeecCC--------CCCCCHHHHHHHHHcCCeEEEeChH
Q 032090 69 EITPNCLSIFQLVRPIPEILILGCGRY--------IEPVNPELRQFIRSTGMKLEAIDSR 120 (147)
Q Consensus 69 ~l~~e~l~~l~~l~~~pEvlIIGTG~~--------~~~l~~~l~~~l~~~GI~vEvM~T~ 120 (147)
.++.++++..+ +. +-|+|+|=||-. .--++++..++|.++||..--.||.
T Consensus 88 ~It~~dl~~~~-i~-~gd~vlirTg~~~~~~y~~~~pgls~eaa~~L~~~~v~~vG~D~~ 145 (207)
T 1r61_A 88 RITKDDIAHLD-IQ-EGDFVLFKTKNSFEDAFHFEFIFVAEDAARYLADKQIRGVGIDAL 145 (207)
T ss_dssp EECHHHHTTSC-CC-TTCEEEEECGGGGCCSCCTTCCEECHHHHHHHHHHTCSEEECSSS
T ss_pred ccCHHHHHhcc-CC-CCcEEEEECCCCCchhhcCCCcccCHHHHHHHHHCCCCEEEEcCC
Confidence 58888877543 23 249999999932 1236889999999999987766653
No 59
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=28.54 E-value=12 Score=33.66 Aligned_cols=35 Identities=14% Similarity=0.259 Sum_probs=26.3
Q ss_pred CCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeCh
Q 032090 84 IPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDS 119 (147)
Q Consensus 84 ~pEvlIIGTG~~~~~l~~~l~~~l~~~GI~vEvM~T 119 (147)
.+|++||++|... ..--+..+.|++.||.+++.|.
T Consensus 549 g~dvtiia~G~~v-~~al~Aa~~L~~~Gi~~~Vi~~ 583 (663)
T 3kom_A 549 DAKLTIVATGSEV-ELAVKVANEFEKKGIKLNVASI 583 (663)
T ss_dssp TCSCEEEECTTHH-HHHHHHHHHHHHTTCCCEEEEC
T ss_pred CCCEEEEEecHHH-HHHHHHHHHHHhcCCCeEEEEc
Confidence 6899999999752 2333556789999999999653
No 60
>2etv_A Iron(III) ABC transporter, periplasmic iron-bindi protein, putative; periplasmic iron-binding protein, structural genomics; HET: MLY; 1.70A {Thermotoga maritima} SCOP: c.92.2.4
Probab=27.22 E-value=95 Score=24.57 Aligned_cols=33 Identities=9% Similarity=0.204 Sum_probs=23.3
Q ss_pred cCCCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeCh
Q 032090 82 RPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDS 119 (147)
Q Consensus 82 ~~~pEvlIIGTG~~~~~l~~~l~~~l~~~GI~vEvM~T 119 (147)
.-+||+||.... -.....+.+++.||.+-+++.
T Consensus 94 al~PDLIi~~~~-----~~~~~~~~~~~~GiPvv~~~~ 126 (346)
T 2etv_A 94 TLQPDVVFITYV-----DRXTAXDIQEXTGIPVVVLSY 126 (346)
T ss_dssp HHCCSEEEEESC-----CHHHHHHHHHHHTSCEEEECC
T ss_pred cCCCCEEEEeCC-----ccchHHHHHHhcCCcEEEEec
Confidence 335999987542 134566678889999998864
No 61
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=27.08 E-value=31 Score=23.19 Aligned_cols=37 Identities=5% Similarity=0.121 Sum_probs=28.8
Q ss_pred CCcEEEEeecCCC---CCCCHHHHHHHHHcCCeEEEeChH
Q 032090 84 IPEILILGCGRYI---EPVNPELRQFIRSTGMKLEAIDSR 120 (147)
Q Consensus 84 ~pEvlIIGTG~~~---~~l~~~l~~~l~~~GI~vEvM~T~ 120 (147)
...|+|+..|... ......+++.|.++||.++..|..
T Consensus 15 ~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~ 54 (111)
T 3zyw_A 15 AAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIF 54 (111)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGG
T ss_pred cCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECc
Confidence 4679999887754 345568999999999999987643
No 62
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=26.08 E-value=14 Score=32.79 Aligned_cols=34 Identities=9% Similarity=0.318 Sum_probs=25.0
Q ss_pred CCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeC
Q 032090 84 IPEILILGCGRYIEPVNPELRQFIRSTGMKLEAID 118 (147)
Q Consensus 84 ~pEvlIIGTG~~~~~l~~~l~~~l~~~GI~vEvM~ 118 (147)
++|++||++|... ..--+..+.|++.||.+++.+
T Consensus 498 d~dv~iva~G~~v-~~al~Aa~~L~~~Gi~v~Vid 531 (616)
T 3mos_A 498 DDQVTVIGAGVTL-HEALAAAELLKKEKINIRVLD 531 (616)
T ss_dssp SEEEEEECCTHHH-HHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCEEEEEeCHHH-HHHHHHHHHHHhcCCCEEEEE
Confidence 3569999999642 233455678899999999954
No 63
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=25.90 E-value=19 Score=26.95 Aligned_cols=43 Identities=21% Similarity=0.117 Sum_probs=33.8
Q ss_pred cEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeChHHHHHHHHh
Q 032090 86 EILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNI 128 (147)
Q Consensus 86 EvlIIGTG~~~~~l~~~l~~~l~~~GI~vEvM~T~aAcrTyNi 128 (147)
.+++.=||..-..-..++.+.|++.|..|.+.=|++|.+...-
T Consensus 7 ~IllgvTGs~aa~k~~~ll~~L~~~g~~V~vv~T~~A~~fi~~ 49 (175)
T 3qjg_A 7 NVLICLCGSVNSINISHYIIELKSKFDEVNVIASTNGRKFING 49 (175)
T ss_dssp EEEEEECSSGGGGGHHHHHHHHTTTCSEEEEEECTGGGGGSCH
T ss_pred EEEEEEeCHHHHHHHHHHHHHHHHCCCEEEEEECcCHHHHhhH
Confidence 5677778887555578888999999999999989999875543
No 64
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=25.70 E-value=60 Score=22.96 Aligned_cols=49 Identities=14% Similarity=0.278 Sum_probs=34.1
Q ss_pred CCChhhhhch-hhhcCCCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeC
Q 032090 69 EITPNCLSIF-QLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAID 118 (147)
Q Consensus 69 ~l~~e~l~~l-~~l~~~pEvlIIGTG~~~~~l~~~l~~~l~~~GI~vEvM~ 118 (147)
.++.+.++.+ +.+...-.+.++|.|... .+-..+...|...|+.+.+.+
T Consensus 23 ~l~~~~l~~~~~~i~~a~~I~i~G~G~S~-~~a~~~~~~l~~~g~~~~~~~ 72 (187)
T 3sho_A 23 QTQPEAIEAAVEAICRADHVIVVGMGFSA-AVAVFLGHGLNSLGIRTTVLT 72 (187)
T ss_dssp TCCHHHHHHHHHHHHHCSEEEEECCGGGH-HHHHHHHHHHHHTTCCEEEEC
T ss_pred hCCHHHHHHHHHHHHhCCEEEEEecCchH-HHHHHHHHHHHhcCCCEEEec
Confidence 3455555422 334444589999999863 355667778889999999998
No 65
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=25.66 E-value=28 Score=25.30 Aligned_cols=54 Identities=13% Similarity=0.194 Sum_probs=35.9
Q ss_pred CCChhhhhc-hhhhcCCC-cEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeChHHHH
Q 032090 69 EITPNCLSI-FQLVRPIP-EILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAA 123 (147)
Q Consensus 69 ~l~~e~l~~-l~~l~~~p-EvlIIGTG~~~~~l~~~l~~~l~~~GI~vEvM~T~aAc 123 (147)
.++.+.++. .+.+.... .+.++|+|.. ..+-..+...|.+.|+.+.+.+.....
T Consensus 28 ~l~~~~i~~~~~~i~~a~~~I~i~G~G~S-~~~A~~~~~~l~~~g~~~~~~~~~~~~ 83 (201)
T 3fxa_A 28 VTSEEALVKTVEKIAECTGKIVVAGCGTS-GVAAKKLVHSFNCIERPAVFLTPSDAV 83 (201)
T ss_dssp HSCHHHHHHHHHHHHHCSSCEEEECCTHH-HHHHHHHHHHHHHTTCCEEECCHHHHT
T ss_pred hcCHHHHHHHHHHHHhcCCcEEEEEecHH-HHHHHHHHHHHHhcCCcEEEeCchHHH
Confidence 345555542 23444444 7999999987 334556777788899999998765443
No 66
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=25.43 E-value=59 Score=22.79 Aligned_cols=50 Identities=10% Similarity=0.200 Sum_probs=34.6
Q ss_pred CCCChhhhhchhhhcCCCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeCh
Q 032090 68 SEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDS 119 (147)
Q Consensus 68 ~~l~~e~l~~l~~l~~~pEvlIIGTG~~~~~l~~~l~~~l~~~GI~vEvM~T 119 (147)
+..+.+.|+. ++...-.+.|||.+...-.+...+.++|.+.|..+--.+.
T Consensus 8 ~~m~~~~l~~--ll~~p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~~Vnp 57 (144)
T 2d59_A 8 DGLTDEDIRE--ILTRYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNP 57 (144)
T ss_dssp SCCCHHHHHH--HHHHCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECT
T ss_pred CCCCHHHHHH--HHcCCCEEEEEccCCCCCchHHHHHHHHHHCCCEEEEECC
Confidence 3456677775 3431247999999987666777888899999986544443
No 67
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=25.25 E-value=19 Score=26.98 Aligned_cols=43 Identities=9% Similarity=-0.058 Sum_probs=34.9
Q ss_pred cEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeChHHHHHHHHh
Q 032090 86 EILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNI 128 (147)
Q Consensus 86 EvlIIGTG~~~~~l~~~l~~~l~~~GI~vEvM~T~aAcrTyNi 128 (147)
.+++.=||..-..-..++.+.|++.|..|.+.=|++|.+...-
T Consensus 4 ~IllgvTGs~aa~k~~~l~~~L~~~g~~V~vv~T~~A~~fi~~ 46 (181)
T 1g63_A 4 KLLICATASINVININHYIVELKQHFDEVNILFSPSSKNFINT 46 (181)
T ss_dssp CEEEEECSCGGGGGHHHHHHHHTTTSSCEEEEECGGGGGTSCG
T ss_pred EEEEEEECHHHHHHHHHHHHHHHHCCCEEEEEEchhHHHHHHH
Confidence 4677778887666678899999999999999999999876544
No 68
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=25.19 E-value=38 Score=28.91 Aligned_cols=35 Identities=14% Similarity=0.188 Sum_probs=28.3
Q ss_pred CCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeC
Q 032090 84 IPEILILGCGRYIEPVNPELRQFIRSTGMKLEAID 118 (147)
Q Consensus 84 ~pEvlIIGTG~~~~~l~~~l~~~l~~~GI~vEvM~ 118 (147)
.++|+|+..+.....---++.+.|+++||.+|++.
T Consensus 419 ~~~V~v~~~~~~~~~~a~~l~~~Lr~~Gi~ve~~~ 453 (517)
T 4g85_A 419 ETQVLVASAQKKLLEERLKLVSELWDAGIKAELLY 453 (517)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHTTCCEEECS
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHHHCCCcEEEEe
Confidence 46899999887755445678899999999999973
No 69
>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}
Probab=25.16 E-value=2e+02 Score=22.74 Aligned_cols=52 Identities=12% Similarity=0.099 Sum_probs=36.9
Q ss_pred cCCCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEE-----eChHHHHHHHHhhhhcccee
Q 032090 82 RPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEA-----IDSRNAASTYNILNEEGRIV 136 (147)
Q Consensus 82 ~~~pEvlIIGTG~~~~~l~~~l~~~l~~~GI~vEv-----M~T~aAcrTyNiL~sEGR~V 136 (147)
++++|+|+|.|.. ..+.++...+.++|+.|-+ ++...|-+.......-|+.+
T Consensus 81 ~~~iD~V~i~tp~---~~h~~~~~~al~~Gk~V~~EKP~a~~~~~~~~l~~~a~~~~~~~ 137 (383)
T 3oqb_A 81 DKNDTMFFDAATT---QARPGLLTQAINAGKHVYCEKPIATNFEEALEVVKLANSKGVKH 137 (383)
T ss_dssp CSSCCEEEECSCS---SSSHHHHHHHHTTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCE
T ss_pred CCCCCEEEECCCc---hHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHHHHcCCeE
Confidence 5679999999986 5678888888889999887 45555555555444444443
No 70
>3rys_A Adenosine deaminase 1; SGX, hydrolase; HET: ADE; 2.60A {Arthrobacter aurescens} SCOP: c.1.9.0
Probab=24.90 E-value=38 Score=27.73 Aligned_cols=36 Identities=14% Similarity=0.059 Sum_probs=28.1
Q ss_pred CCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeChHHH
Q 032090 84 IPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNA 122 (147)
Q Consensus 84 ~pEvlIIGTG~~~~~l~~~l~~~l~~~GI~vEvM~T~aA 122 (147)
+++- ||-|-... -+|++.+.++++||.+|+.++.+-
T Consensus 217 g~~r--IgHgv~l~-~d~~l~~~l~~~~i~le~cP~SN~ 252 (343)
T 3rys_A 217 HVER--IDHGIRCM-EDTDVVQRLVAEQVPLTVCPLSNV 252 (343)
T ss_dssp CCSE--EEECGGGG-GCHHHHHHHHHHTCCEEECHHHHH
T ss_pred Ccce--eeeeeeec-CChHHHHHHHhcCCCeeEchhHHH
Confidence 3554 78776543 258999999999999999988764
No 71
>3iar_A Adenosine deaminase; purine metabolism structural genomics, structural genomics consortium, SGC, D mutation, hereditary hemolytic anemia, hydrolase; HET: 3D1; 1.52A {Homo sapiens} SCOP: c.1.9.1 PDB: 2bgn_E* 1w1i_E* 1qxl_A* 1krm_A* 1vfl_A 1ndv_A* 1ndy_A* 1ndz_A* 1o5r_A* 1uml_A* 1v79_A* 1v7a_A* 1ndw_A 1wxy_A* 1wxz_A* 2e1w_A* 2z7g_A* 2ada_A* 3mvi_A 1a4l_A* ...
Probab=24.47 E-value=45 Score=27.58 Aligned_cols=36 Identities=22% Similarity=0.174 Sum_probs=28.2
Q ss_pred CCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeChHHH
Q 032090 84 IPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNA 122 (147)
Q Consensus 84 ~pEvlIIGTG~~~~~l~~~l~~~l~~~GI~vEvM~T~aA 122 (147)
+++- ||-|-... -+|++.+.++++||.+|+.++.+-
T Consensus 229 g~~R--IgHgv~l~-~d~~l~~~l~~~~i~le~cP~SN~ 264 (367)
T 3iar_A 229 KTER--LGHGYHTL-EDQALYNRLRQENMHFEICPWSSY 264 (367)
T ss_dssp CCSE--EEECGGGG-GCHHHHHHHHHTTCEEEECHHHHH
T ss_pred CCce--eeeeeeec-CCHHHHHHHHhCCcEEEECHHHHH
Confidence 3553 78886643 368999999999999999888764
No 72
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*
Probab=24.30 E-value=2.3e+02 Score=21.30 Aligned_cols=84 Identities=11% Similarity=0.089 Sum_probs=40.3
Q ss_pred CCeeeEeCCcEEE--cCEEEeeeEEEeCCceecCCCC--CCCC----CC---hh---hhhchhhhcCCCcEEEEeecCCC
Q 032090 31 LPSLRYTDTGFTV--NGVQYEGSLLCIGNLLLSWTPK--KFSE----IT---PN---CLSIFQLVRPIPEILILGCGRYI 96 (147)
Q Consensus 31 ~~~~~Y~~g~f~I--ng~~y~gsviv~p~~v~~W~~~--~~~~----l~---~e---~l~~l~~l~~~pEvlIIGTG~~~ 96 (147)
...+....+.++| +|..+..+.+|...+..+..+. ...+ +. .. .+.........-.++|||.|..
T Consensus 92 v~~i~~~~~~~~v~~~~~~~~~~~vv~A~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~- 170 (333)
T 1vdc_A 92 VTKVDFSSKPFKLFTDSKAILADAVILAIGAVAKRLSFVGSGEVLGGFWNRGISACAVCDGAAPIFRNKPLAVIGGGDS- 170 (333)
T ss_dssp CCEEECSSSSEEEECSSEEEEEEEEEECCCEEECCCCCBTCSSSSSCCBTTTEESCHHHHTTSGGGTTSEEEEECCSHH-
T ss_pred EEEEEEcCCEEEEEECCcEEEcCEEEECCCCCcCCCCCCCccccccccccCcEEEeccCccchhhcCCCeEEEECCChH-
Confidence 3333344555555 6778887777765554332211 1111 10 00 1111000022347999999853
Q ss_pred CCCCHHHHHHHHHcCCeEEEeC
Q 032090 97 EPVNPELRQFIRSTGMKLEAID 118 (147)
Q Consensus 97 ~~l~~~l~~~l~~~GI~vEvM~ 118 (147)
.-++...|.+.|..|.+..
T Consensus 171 ---g~e~A~~l~~~g~~V~lv~ 189 (333)
T 1vdc_A 171 ---AMEEANFLTKYGSKVYIIH 189 (333)
T ss_dssp ---HHHHHHHHTTTSSEEEEEC
T ss_pred ---HHHHHHHHHhcCCeEEEEe
Confidence 2245555666666665543
No 73
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=24.22 E-value=31 Score=28.57 Aligned_cols=35 Identities=14% Similarity=0.188 Sum_probs=27.9
Q ss_pred CCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeC
Q 032090 84 IPEILILGCGRYIEPVNPELRQFIRSTGMKLEAID 118 (147)
Q Consensus 84 ~pEvlIIGTG~~~~~l~~~l~~~l~~~GI~vEvM~ 118 (147)
.++++|+..+.....---++.+.|+++||.+|++.
T Consensus 366 ~~~v~v~~~~~~~~~~a~~l~~~Lr~~Gi~ve~~~ 400 (464)
T 4g84_A 366 ETQVLVASAQKKLLEERLKLVSELWDAGIKAELLY 400 (464)
T ss_dssp CCCEEEECSSSSCHHHHHHHHHHHHHTTCCEECCS
T ss_pred cceEEEEeCCHHHHHHHHHHHHHHHHCCCcEEEEe
Confidence 46899998887755445678899999999999863
No 74
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=23.62 E-value=36 Score=27.58 Aligned_cols=67 Identities=13% Similarity=0.260 Sum_probs=42.5
Q ss_pred CCCCChhhhhchhhh------cCCCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeChHHHHHHHHhhhhcc
Q 032090 67 FSEITPNCLSIFQLV------RPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEG 133 (147)
Q Consensus 67 ~~~l~~e~l~~l~~l------~~~pEvlIIGTG~~~~~l~~~l~~~l~~~GI~vEvM~T~aAcrTyNiL~sEG 133 (147)
...+++++.+...-. +-+||++|+..-....+=|...++.|+++||...+..-.-.-+.=.-|-++|
T Consensus 41 GaKm~pe~~~~~~~~~~~~~~~~~pDfvI~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K~kd~l~~~g 113 (283)
T 1qv9_A 41 SVKMDPECVEAAVEMALDIAEDFEPDFIVYGGPNPAAPGPSKAREMLADSEYPAVIIGDAPGLKVKDEMEEQG 113 (283)
T ss_dssp TTCCSHHHHHHHHHHHHHHHHHHCCSEEEEECSCTTSHHHHHHHHHHHTSSSCEEEEEEGGGGGGHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHhhhhhhhcCCCEEEEECCCCCCCCchHHHHHHHhCCCCEEEEcCCcchhhHHHHHhcC
Confidence 556777776632111 3368998888766666666678888989999888765444433334444444
No 75
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=23.45 E-value=43 Score=22.57 Aligned_cols=40 Identities=5% Similarity=0.003 Sum_probs=29.9
Q ss_pred CCCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeChHHH
Q 032090 83 PIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNA 122 (147)
Q Consensus 83 ~~pEvlIIGTG~~~~~l~~~l~~~l~~~GI~vEvM~T~aA 122 (147)
.++|.++|..+......-.++.+.+.++|+.+.+++.-..
T Consensus 64 ~~id~viia~~~~~~~~~~~i~~~l~~~gv~v~~vP~~~~ 103 (141)
T 3nkl_A 64 HCISTVLLAVPSASQVQKKVIIESLAKLHVEVLTIPNLDD 103 (141)
T ss_dssp HTCCEEEECCTTSCHHHHHHHHHHHHTTTCEEEECCCHHH
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHHHHHcCCeEEECCCHHH
Confidence 4589999988754323335778889999999999987554
No 76
>2z6r_A Diphthine synthase; methyltransferase, S-adenosyl-L-methionine, transferase; HET: SAH MES; 1.50A {Pyrococcus horikoshii} PDB: 2dek_A* 1wng_A* 1vce_A* 2ed3_A* 2e4r_A* 2owg_A* 2ek3_A* 2pcm_A* 2p5c_A* 2hut_A* 2emr_A* 2el3_A* 2el0_A* 2ejk_A* 2eld_A* 2el2_A* 2eka_A* 2eh5_A* 2pcg_A* 2el1_A* ...
Probab=23.32 E-value=1.2e+02 Score=23.06 Aligned_cols=41 Identities=20% Similarity=0.243 Sum_probs=32.3
Q ss_pred CcEEEEeecCCCC-CCCHHHHHHHHHcCCeEEEeChHHHHHH
Q 032090 85 PEILILGCGRYIE-PVNPELRQFIRSTGMKLEAIDSRNAAST 125 (147)
Q Consensus 85 pEvlIIGTG~~~~-~l~~~l~~~l~~~GI~vEvM~T~aAcrT 125 (147)
-+++++-.|.... -...++.+.+.++||.+|+.+--.|.-.
T Consensus 78 ~~V~~l~~GDP~i~~~~~~l~~~l~~~gi~veviPGiSs~~a 119 (265)
T 2z6r_A 78 NDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSA 119 (265)
T ss_dssp SCEEEEESBCTTSSSSTHHHHHHHHHTTCCEEEECCCCHHHH
T ss_pred CcEEEEECCCCcCCCCHHHHHHHHHHCCCcEEEECChhHHHH
Confidence 5799999999855 4667899999999999999765544443
No 77
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A
Probab=22.82 E-value=88 Score=22.70 Aligned_cols=51 Identities=8% Similarity=0.115 Sum_probs=33.1
Q ss_pred cCCCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeChHHHHHHHHhhhhccce
Q 032090 82 RPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRI 135 (147)
Q Consensus 82 ~~~pEvlIIGTG~~~~~l~~~l~~~l~~~GI~vEvM~T~aAcrTyNiL~sEGR~ 135 (147)
.-++.-|++|+-.... . ...+.|+++||.|+.+.-+.+...+---..+.|.
T Consensus 103 ~agi~rVv~g~~~~~~--g-~~~~~l~~~gi~v~~~~~~e~~~l~~~f~~~~r~ 153 (161)
T 1p6o_A 103 MYGIPRCVVGENVNFK--S-KGEKYLQTRGHEVVVVDDERCKKIMKQFIDERPQ 153 (161)
T ss_dssp HHTCCEEEEEESSSCC--C-THHHHHHHTTCEEEECCCHHHHHHHHHHHHHCHH
T ss_pred HhCCCEEEEEecCCCC--c-cHHHHHHhcCCEEEEecHHHHHHHHHHHHHhChh
Confidence 3467889999865421 1 3567789999999987666665555444444443
No 78
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*
Probab=22.80 E-value=37 Score=28.02 Aligned_cols=33 Identities=24% Similarity=0.312 Sum_probs=24.7
Q ss_pred CCCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeCh
Q 032090 83 PIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDS 119 (147)
Q Consensus 83 ~~pEvlIIGTG~~~~~l~~~l~~~l~~~GI~vEvM~T 119 (147)
...|++|||+|-.-. ....+|.++|..|.++.-
T Consensus 10 ~~~dvvVIGaG~~GL----~aA~~La~~G~~V~vlE~ 42 (453)
T 2bcg_G 10 TDYDVIVLGTGITEC----ILSGLLSVDGKKVLHIDK 42 (453)
T ss_dssp CBCSEEEECCSHHHH----HHHHHHHHTTCCEEEECS
T ss_pred ccCCEEEECcCHHHH----HHHHHHHHCCCeEEEEeC
Confidence 347999999996521 445578899999998754
No 79
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=22.61 E-value=33 Score=23.10 Aligned_cols=38 Identities=18% Similarity=0.405 Sum_probs=25.7
Q ss_pred EEEEeecCCCCCCCHHHHHHHHHcCCe--EEEeChHHHHH
Q 032090 87 ILILGCGRYIEPVNPELRQFIRSTGMK--LEAIDSRNAAS 124 (147)
Q Consensus 87 vlIIGTG~~~~~l~~~l~~~l~~~GI~--vEvM~T~aAcr 124 (147)
+++=|+|-....+-..+++.+.++||. ++..+...+-.
T Consensus 8 lvvC~~G~~TSll~~kl~~~~~~~gi~~~i~~~~~~~~~~ 47 (109)
T 2l2q_A 8 LLVCGAGMSTSMLVQRIEKYAKSKNINATIEAIAETRLSE 47 (109)
T ss_dssp EEESSSSCSSCHHHHHHHHHHHHHTCSEEEEEECSTTHHH
T ss_pred EEECCChHhHHHHHHHHHHHHHHCCCCeEEEEecHHHHHh
Confidence 344566666556777999999999986 45555555443
No 80
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=22.40 E-value=1.3e+02 Score=23.29 Aligned_cols=37 Identities=16% Similarity=0.285 Sum_probs=27.4
Q ss_pred hhhcCCCcEEEEee-----cCCCCCCCHHHHHHHHHcCCeEEE
Q 032090 79 QLVRPIPEILILGC-----GRYIEPVNPELRQFIRSTGMKLEA 116 (147)
Q Consensus 79 ~~l~~~pEvlIIGT-----G~~~~~l~~~l~~~l~~~GI~vEv 116 (147)
+.+ .+..++++.. +......+++.++.|.++|+.|-.
T Consensus 62 e~~-~~i~lVvVTh~~GF~~pg~~e~~~e~~~~L~~~G~~V~t 103 (201)
T 1vp8_A 62 EMA-EGLEVVVVTYHTGFVREGENTMPPEVEEELRKRGAKIVR 103 (201)
T ss_dssp HHC-TTCEEEEEECCTTSSSTTCCSSCHHHHHHHHHTTCEEEE
T ss_pred HHh-cCCeEEEEeCcCCCCCCCCCcCCHHHHHHHHhCCCEEEE
Confidence 444 4468888872 222467899999999999999876
No 81
>3pao_A Adenosine deaminase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: ADE; 2.49A {Pseudomonas aeruginosa} PDB: 3pan_A* 3ou8_A* 3pbm_A*
Probab=22.36 E-value=45 Score=26.99 Aligned_cols=32 Identities=13% Similarity=0.070 Sum_probs=25.8
Q ss_pred EeecCCCCCCCHHHHHHHHHcCCeEEEeChHHH
Q 032090 90 LGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNA 122 (147)
Q Consensus 90 IGTG~~~~~l~~~l~~~l~~~GI~vEvM~T~aA 122 (147)
||-|-... -+|++.+.++++||.+|+.++.+-
T Consensus 218 igHgv~l~-~d~~l~~~l~~~~i~le~cP~SN~ 249 (326)
T 3pao_A 218 IDHGVRAF-EDERLMRRLIDEQIPLTVCPLSNT 249 (326)
T ss_dssp EEECGGGG-GCHHHHHHHHHHTCCEEECHHHHH
T ss_pred eeeeeeec-ccHHHHHHHHHcCCeEEECchhHH
Confidence 67776533 258999999999999999988764
No 82
>3god_A CAS1; crispr, metallonuclease, DNAse, prokaryotic immune system, immune system; 2.17A {Pseudomonas aeruginosa}
Probab=21.84 E-value=46 Score=27.18 Aligned_cols=32 Identities=16% Similarity=0.282 Sum_probs=27.1
Q ss_pred CcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeCh
Q 032090 85 PEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDS 119 (147)
Q Consensus 85 pEvlIIGTG~~~~~l~~~l~~~l~~~GI~vEvM~T 119 (147)
.+.|++|+| ..+++.+..+|.++||.|-+++.
T Consensus 59 i~~I~l~g~---v~iT~~am~~la~~gI~V~f~~~ 90 (328)
T 3god_A 59 TTSLLLGTG---TSITQAAMRELARAGVLVGFCGG 90 (328)
T ss_dssp EEEEEECTT---EEEEHHHHHHHHHTTCEEEEECS
T ss_pred CCEEEEeCC---ccCCHHHHHHHHHCCCEEEEECC
Confidence 567888866 56899999999999999999864
No 83
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=21.63 E-value=56 Score=24.87 Aligned_cols=32 Identities=22% Similarity=0.263 Sum_probs=24.4
Q ss_pred CcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeChH
Q 032090 85 PEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSR 120 (147)
Q Consensus 85 pEvlIIGTG~~~~~l~~~l~~~l~~~GI~vEvM~T~ 120 (147)
.||+|||-|-.- -.+...|.+.|+.|-+.+-.
T Consensus 3 ~dV~IIGaG~~G----l~~A~~L~~~G~~V~vlE~~ 34 (336)
T 1yvv_A 3 VPIAIIGTGIAG----LSAAQALTAAGHQVHLFDKS 34 (336)
T ss_dssp CCEEEECCSHHH----HHHHHHHHHTTCCEEEECSS
T ss_pred ceEEEECCcHHH----HHHHHHHHHCCCcEEEEECC
Confidence 589999999652 24666788999999887643
No 84
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=21.55 E-value=70 Score=21.44 Aligned_cols=18 Identities=11% Similarity=0.290 Sum_probs=15.0
Q ss_pred HHHHHHHHHcCCeEEEeC
Q 032090 101 PELRQFIRSTGMKLEAID 118 (147)
Q Consensus 101 ~~l~~~l~~~GI~vEvM~ 118 (147)
.+..++|+++|+.+|+..
T Consensus 79 ~~ai~~L~~~~v~vEvl~ 96 (106)
T 3dhx_A 79 QAAIAWLQEHHVKVEVLG 96 (106)
T ss_dssp HHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHCCCEEEEee
Confidence 357889999999999863
No 85
>2qbu_A Precorrin-2 methyltransferase; HET: SAH; 2.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=21.40 E-value=1.2e+02 Score=22.44 Aligned_cols=39 Identities=18% Similarity=0.149 Sum_probs=30.0
Q ss_pred hcCCCcEEEEeecCCCCC-CCHHHHHHHHHcCCeEEEeCh
Q 032090 81 VRPIPEILILGCGRYIEP-VNPELRQFIRSTGMKLEAIDS 119 (147)
Q Consensus 81 l~~~pEvlIIGTG~~~~~-l~~~l~~~l~~~GI~vEvM~T 119 (147)
+...=+++++=.|....+ ....+.+.+.++||.+|+.+-
T Consensus 91 ~~~g~~V~~l~~GDP~i~~~~~~l~~~~~~~gi~v~viPG 130 (232)
T 2qbu_A 91 LEDGRDVAFITLGDPSIYSTFSYLQQRIEDMGFKTEMVPG 130 (232)
T ss_dssp HHTTCCEEEEESBCTTBSCSHHHHHHHHHHTTCCEEEECC
T ss_pred HHCCCeEEEEeCCCCccchhHHHHHHHHHHCCCcEEEeCC
Confidence 333457888888998554 556788999999999999764
No 86
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=21.38 E-value=52 Score=22.18 Aligned_cols=30 Identities=20% Similarity=0.269 Sum_probs=22.4
Q ss_pred CCCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEE
Q 032090 83 PIPEILILGCGRYIEPVNPELRQFIRSTGMKLEA 116 (147)
Q Consensus 83 ~~pEvlIIGTG~~~~~l~~~l~~~l~~~GI~vEv 116 (147)
++..++|+|.|.. ..++.+..++.|+.+.+
T Consensus 31 ~~~~l~i~G~g~~----~~~~~~~~~~~~~~v~~ 60 (166)
T 3qhp_A 31 QDIVLLLKGKGPD----EKKIKLLAQKLGVKAEF 60 (166)
T ss_dssp GGEEEEEECCSTT----HHHHHHHHHHHTCEEEC
T ss_pred CCeEEEEEeCCcc----HHHHHHHHHHcCCeEEE
Confidence 4567999998854 36777888888876666
No 87
>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo structural genomics, joint center for structural genomics; HET: MSE PG4; 1.93A {Parabacteroides distasonis}
Probab=21.34 E-value=1.3e+02 Score=20.66 Aligned_cols=52 Identities=13% Similarity=0.207 Sum_probs=34.0
Q ss_pred hcCCCcEEEEeecCC-CCC----CCHH--------HHHHHHHcCCeEEEeCh--------------HHHHHHHHhhhhc
Q 032090 81 VRPIPEILILGCGRY-IEP----VNPE--------LRQFIRSTGMKLEAIDS--------------RNAASTYNILNEE 132 (147)
Q Consensus 81 l~~~pEvlIIGTG~~-~~~----l~~~--------l~~~l~~~GI~vEvM~T--------------~aAcrTyNiL~sE 132 (147)
...+||+|+|-.|.+ ... .+++ +.+.+++.|..+-++.. ....+.||-.+.+
T Consensus 71 ~~~~pd~vvi~~G~ND~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~vil~~~~p~~~~~~~~~~~~~~~~~~~n~~l~~ 149 (204)
T 3p94_A 71 INLKPKAVVILAGINDIAHNNGVIALENVFGNLVSMAELAKANHIKVIFCSVLPAYDFPWRPGMQPADKVIQLNKWIKE 149 (204)
T ss_dssp GGGCEEEEEEECCHHHHTTTTSCCCHHHHHHHHHHHHHHHHHTTCEEEEECCCCCSCBTTBTTCCCHHHHHHHHHHHHH
T ss_pred HhCCCCEEEEEeecCccccccCCCCHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHH
Confidence 345799999998877 222 2332 45567778998888742 3366777766654
No 88
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*
Probab=21.34 E-value=48 Score=26.42 Aligned_cols=33 Identities=9% Similarity=0.196 Sum_probs=23.9
Q ss_pred CCCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeCh
Q 032090 83 PIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDS 119 (147)
Q Consensus 83 ~~pEvlIIGTG~~~~~l~~~l~~~l~~~GI~vEvM~T 119 (147)
.+.||+|||-|-.- -.+...|.++|+.|.+.+-
T Consensus 22 ~~~dV~IVGaG~aG----l~~A~~La~~G~~V~v~E~ 54 (407)
T 3rp8_A 22 GHMKAIVIGAGIGG----LSAAVALKQSGIDCDVYEA 54 (407)
T ss_dssp -CCEEEEECCSHHH----HHHHHHHHHTTCEEEEEES
T ss_pred CCCEEEEECCCHHH----HHHHHHHHhCCCCEEEEeC
Confidence 35799999999542 2456678889999887653
No 89
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=21.14 E-value=24 Score=32.95 Aligned_cols=34 Identities=15% Similarity=0.301 Sum_probs=25.2
Q ss_pred CcEEEEeecCCCCCCCHHHHHHHHHc-CCeEEEeCh
Q 032090 85 PEILILGCGRYIEPVNPELRQFIRST-GMKLEAIDS 119 (147)
Q Consensus 85 pEvlIIGTG~~~~~l~~~l~~~l~~~-GI~vEvM~T 119 (147)
+|+.||++|... ..--+..+.|++. ||.++|.+.
T Consensus 724 ~dVtLia~G~~v-~~al~AAe~L~~e~GI~a~Vvd~ 758 (886)
T 2qtc_A 724 GKVQLLGSGSIL-RHVREAAEILAKDYGVGSDVYSV 758 (886)
T ss_dssp EEEEEEECGGGH-HHHHHHHHHHHHHHCEEEEEEEC
T ss_pred CCEEEEeCcHHH-HHHHHHHHHHhhhhCCceEEEEC
Confidence 899999999764 2333455678887 999999653
No 90
>3nkd_A Crispr-associated protein CAS1; crispr,CAS1,YGBT,nuclease, DNA recombination, DNA repair, IM system; 1.95A {Escherichia coli}
Probab=21.09 E-value=68 Score=25.94 Aligned_cols=32 Identities=16% Similarity=0.171 Sum_probs=27.4
Q ss_pred CcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeCh
Q 032090 85 PEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDS 119 (147)
Q Consensus 85 pEvlIIGTG~~~~~l~~~l~~~l~~~GI~vEvM~T 119 (147)
.+.|++++| ..++..+...|.++||.|-+++.
T Consensus 49 i~~I~l~g~---v~iS~~al~~la~~gI~v~f~~~ 80 (305)
T 3nkd_A 49 VACIMLEPG---TRVSHAAVRLAAQVGTLLVWVGE 80 (305)
T ss_dssp CSEEEECTT---EEECHHHHHHHHHTTCEEEEESG
T ss_pred ccEEEEeCC---ccCCHHHHHHHHHCCCeEEEECC
Confidence 677888876 67899999999999999999874
No 91
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=21.08 E-value=85 Score=20.43 Aligned_cols=30 Identities=30% Similarity=0.414 Sum_probs=19.7
Q ss_pred cEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeCh
Q 032090 86 EILILGCGRYIEPVNPELRQFIRSTGMKLEAIDS 119 (147)
Q Consensus 86 EvlIIGTG~~~~~l~~~l~~~l~~~GI~vEvM~T 119 (147)
.++|+|.|.- -..+.+.|.+.|..+-+.+.
T Consensus 6 ~i~IiG~G~i----G~~~a~~L~~~g~~v~~~d~ 35 (140)
T 1lss_A 6 YIIIAGIGRV----GYTLAKSLSEKGHDIVLIDI 35 (140)
T ss_dssp EEEEECCSHH----HHHHHHHHHHTTCEEEEEES
T ss_pred EEEEECCCHH----HHHHHHHHHhCCCeEEEEEC
Confidence 5788887743 33566677777777766654
No 92
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=20.61 E-value=1.6e+02 Score=19.93 Aligned_cols=48 Identities=6% Similarity=0.061 Sum_probs=30.6
Q ss_pred CCcEEEEeecCC--CCCCCH--------HHHHHHHHcCCeEEEeCh-------HHHHHHHHhhhh
Q 032090 84 IPEILILGCGRY--IEPVNP--------ELRQFIRSTGMKLEAIDS-------RNAASTYNILNE 131 (147)
Q Consensus 84 ~pEvlIIGTG~~--~~~l~~--------~l~~~l~~~GI~vEvM~T-------~aAcrTyNiL~s 131 (147)
+||+|+|-.|.+ ....++ ++.+.++++|..+-++.+ ..-...||-.+.
T Consensus 66 ~pd~vvi~~G~ND~~~~~~~~~~~~~~~~~i~~~~~~~~~vvl~~~~~p~~~~~~~~~~~~~~~~ 130 (185)
T 3hp4_A 66 EPTHVLIELGANDGLRGFPVKKMQTNLTALVKKSQAANAMTALMEIYIPPNYGPRYSKMFTSSFT 130 (185)
T ss_dssp CCSEEEEECCHHHHHTTCCHHHHHHHHHHHHHHHHHTTCEEEEECCCCCSTTCHHHHHHHHHHHH
T ss_pred CCCEEEEEeecccCCCCcCHHHHHHHHHHHHHHHHHcCCeEEEEeCCCCCcccHHHHHHHHHHHH
Confidence 689999988865 233333 256677888888877742 334456665543
No 93
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=20.15 E-value=62 Score=22.31 Aligned_cols=34 Identities=26% Similarity=0.537 Sum_probs=25.2
Q ss_pred CCCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeChH
Q 032090 83 PIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSR 120 (147)
Q Consensus 83 ~~pEvlIIGTG~~~~~l~~~l~~~l~~~GI~vEvM~T~ 120 (147)
++..++|+|.|.- -..+.+.|.+.|..|-+.+..
T Consensus 18 ~~~~v~IiG~G~i----G~~la~~L~~~g~~V~vid~~ 51 (155)
T 2g1u_A 18 KSKYIVIFGCGRL----GSLIANLASSSGHSVVVVDKN 51 (155)
T ss_dssp CCCEEEEECCSHH----HHHHHHHHHHTTCEEEEEESC
T ss_pred CCCcEEEECCCHH----HHHHHHHHHhCCCeEEEEECC
Confidence 4467999999853 346777888899888877653
No 94
>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*
Probab=20.05 E-value=54 Score=29.43 Aligned_cols=32 Identities=16% Similarity=0.267 Sum_probs=24.1
Q ss_pred CCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeCh
Q 032090 84 IPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDS 119 (147)
Q Consensus 84 ~pEvlIIGTG~~~~~l~~~l~~~l~~~GI~vEvM~T 119 (147)
..|+||+|||-.. .-+...|.+.|..|-+++-
T Consensus 8 ~~D~~i~GtGl~~----~~~a~~~~~~g~~vl~id~ 39 (650)
T 1vg0_A 8 DFDVIVIGTGLPE----SIIAAACSRSGQRVLHVDS 39 (650)
T ss_dssp BCSEEEECCSHHH----HHHHHHHHHTTCCEEEECS
T ss_pred cCCEEEECCcHHH----HHHHHHHHhCCCEEEEEcC
Confidence 5899999999432 2345578889999988764
Done!