BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032091
(147 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q04HQ3|RL9_OENOB 50S ribosomal protein L9 OS=Oenococcus oeni (strain ATCC BAA-331 /
PSU-1) GN=rplI PE=3 SV=1
Length = 151
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 33 KVIRKSEDNMSR-------EFEKAARRLENARLVLRRFPNIEKLRSRASKDDPIE-LRSP 84
K + S +N+S+ E +KAA LE A+ + + + + + + P L
Sbjct: 35 KAVYASPENISKLNGQQNLEAKKAAEILEEAKQLKNKLASTKTIVQFSEHVGPDGRLNGS 94
Query: 85 VTKEELVAEVARQLSISIEPENLHLPSPLSAFGEYEVPMRL 125
VT +E+ ++A+Q +++++ L LP P+ G +EVP +L
Sbjct: 95 VTAKEIADQLAKQFNLTVDKRKLQLPQPIKTIGLHEVPAKL 135
>sp|A4XJI0|RL9_CALS8 50S ribosomal protein L9 OS=Caldicellulosiruptor saccharolyticus
(strain ATCC 43494 / DSM 8903) GN=rplI PE=3 SV=1
Length = 148
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 80 ELRSPVTKEELVAEVARQLSISIEPENLHLPSPLSAFGEYEVPMRLPKAI 129
+L +T +E+ E+ RQL I ++ + + L P+ G YEV +RL + I
Sbjct: 88 KLFGSITNKEIADEIKRQLGIDMDKKKIELEDPIKQIGSYEVSIRLYQGI 137
>sp|A7ZDF3|RL9_CAMC1 50S ribosomal protein L9 OS=Campylobacter concisus (strain 13826)
GN=rplI PE=3 SV=1
Length = 148
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 69/150 (46%), Gaps = 26/150 (17%)
Query: 16 LIREQRRICQPVEEEEVKVIRKSEDNMSREFEKAA-----RRLENARL-----VLRRFPN 65
LI++ + + + E +EVK + + + F KAA R+ E A+ + N
Sbjct: 5 LIKDVKGLGKAGEIKEVKDGYGNNFLIGKGFAKAATPDVLRQYEAAQKRKAEELKYEIAN 64
Query: 66 IEKLRSRASKDDPI---------ELRSPVTKEELVAEVARQLSISIEPENLHLPSPLSAF 116
+EKL+ +K + L V+KEE+ AE+ + + +E + + L + L A
Sbjct: 65 LEKLKEELAKVTVVVKKTLGANGSLFGSVSKEEIAAELEKTHHLVVEKKAIDLDTHLKAV 124
Query: 117 GEYEVPMRLPKAIPLPEGKVQWTLNVKVRG 146
G Y+V ++L +I TL V V+G
Sbjct: 125 GLYDVSIKLGHSI-------NATLKVDVQG 147
>sp|Q3A320|RL9_PELCD 50S ribosomal protein L9 OS=Pelobacter carbinolicus (strain DSM
2380 / Gra Bd 1) GN=rplI PE=3 SV=1
Length = 148
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 9/94 (9%)
Query: 40 DNMSREFEKAARRLENARLVLRRFPNIEKLRS----RASKDDPIELRSPVTKEELVAEVA 95
++ R+ E A+++ A V++ IEK+ RA D +L VT E+ A++A
Sbjct: 48 EHQKRQLEHKAQKVLQASEVVK--AQIEKVTCEFALRAGDDG--KLFGSVTSMEIQAKLA 103
Query: 96 RQLSISIEPENLHLPSPLSAFGEYEVPMRLPKAI 129
+ ++ + + L P+ A GEYEV ++LP I
Sbjct: 104 ES-GVEVDRKKIQLDEPIKALGEYEVAVKLPAGI 136
>sp|Q7M8Z5|RL9_WOLSU 50S ribosomal protein L9 OS=Wolinella succinogenes (strain ATCC
29543 / DSM 1740 / LMG 7466 / NCTC 11488 / FDC 602W)
GN=rplI PE=3 SV=1
Length = 150
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
Query: 34 VIRKSEDNMSREFEKAARRLENARLVLRRFPNIE-KLRSRASKDDPIELRSPVTKEELVA 92
VI + + R EK A+ LE + V + ++ K+ + + L +TKE+L A
Sbjct: 43 VINRWKAEQKRRAEKEAQELERLKNVAKELASVTLKIVQKVGANGS--LYGAITKEDLSA 100
Query: 93 EVARQLSISIEPENLHLPSPLSAFGEYEVPMRLPKAI 129
+ Q I ++ ++ L +P+ + G YE+ ++L I
Sbjct: 101 ALMAQKGIEVDKKSFELKTPIKSTGIYEIEVKLGHGI 137
>sp|B9MQN7|RL9_CALBD 50S ribosomal protein L9 OS=Caldicellulosiruptor bescii (strain
ATCC BAA-1888 / DSM 6725 / Z-1320) GN=rplI PE=3 SV=1
Length = 148
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 42/80 (52%), Gaps = 11/80 (13%)
Query: 50 ARRLENARLVLRRFPNIEKLRSRASKDDPIELRSPVTKEELVAEVARQLSISIEPENLHL 109
A +LE ++++++ ++A ++ +L +T +E+ E+ +QL I + + L
Sbjct: 69 ASKLEKSQIIIK---------AKAGENG--KLFGSITNKEIAEEIKKQLGFDINKKKIEL 117
Query: 110 PSPLSAFGEYEVPMRLPKAI 129
P+ G Y+V +RL + +
Sbjct: 118 DDPIKLIGSYDVVIRLYQGV 137
>sp|Q1D289|RL9_MYXXD 50S ribosomal protein L9 OS=Myxococcus xanthus (strain DK 1622)
GN=rplI PE=3 SV=1
Length = 147
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 11/105 (10%)
Query: 33 KVIRKSEDNMSR-EFEKAARRLENARL------VLRRFPNIE-KLRSRASKDDPIELRSP 84
K + SE N+ + E EKA NA+L ++ I+ ++ R D +L
Sbjct: 35 KAVLASEQNLRQLEHEKAVIAARNAKLKGAAEEQAKKIGAIKVSIKRRVGDQD--KLFGS 92
Query: 85 VTKEELVAEVARQLSISIEPENLHLPSPLSAFGEYEVPMRLPKAI 129
VT ++ VA + SI+ ++HLP P+ A G YEV +RL + +
Sbjct: 93 VTALDIAEAVAAE-GQSIDRRHIHLPEPIKALGNYEVELRLHRDV 136
>sp|Q74M23|RL9_LACJO 50S ribosomal protein L9 OS=Lactobacillus johnsonii (strain CNCM
I-12250 / La1 / NCC 533) GN=rplI PE=3 SV=1
Length = 151
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Query: 51 RRLENARLVLRRFPNIEKLRSRASKDDPIELRSPVTKEELVAEVARQLSISIEPENLHLP 110
++LE+ + ++ +S+A D L ++ +++V + +Q I ++ L LP
Sbjct: 70 KKLEDDKTIVN-------FKSKAGTDS--RLFGSISSKKIVEGLEKQYGIKVDKRKLELP 120
Query: 111 SPLSAFGEYEVPMRLPKAI 129
P+ + G VP++L K +
Sbjct: 121 EPIKSLGYTNVPVKLFKGV 139
>sp|B9DPY3|RL9_STACT 50S ribosomal protein L9 OS=Staphylococcus carnosus (strain TM300)
GN=rplI PE=3 SV=1
Length = 148
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 51 RRLENARLVLRRFPNIEKLRSRASKDDPIELRSPVTKEELVAEVARQLSISIEPENLHLP 110
+ +E+A+ + ++ +IE + A + +L V+ +++ + +Q I I+ + LP
Sbjct: 60 QEIEDAKALKKKLEDIE-VEVTAKSGEGGKLFGSVSAKQIAQALQKQHDIKIDKRKMDLP 118
Query: 111 SPLSAFGEYEVPMRLPKAI 129
+ + A G VP++L K +
Sbjct: 119 NGIHALGYTNVPVKLDKEV 137
>sp|Q2GEY5|RL9_NEOSM 50S ribosomal protein L9 OS=Neorickettsia sennetsu (strain
Miyayama) GN=rplI PE=3 SV=1
Length = 160
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 50 ARRLENARLVLRRFPNIEKLRSRASKDDPIELRSPVTKEELVAEVARQLSISIEPENLHL 109
A LE A + + F I+ L A + + L V+ +++VAE++++ I I +N+ L
Sbjct: 59 AAELETASELAKSFTEIDVLPIYAQAERGV-LFGAVSAKQVVAELSKK-GIEITTKNVVL 116
Query: 110 PSPLSAFGEYEVPMRL 125
+P+ A GE+EV + L
Sbjct: 117 GAPIKALGEHEVRIFL 132
>sp|C4Z4Q1|RL9_EUBE2 50S ribosomal protein L9 OS=Eubacterium eligens (strain ATCC 27750
/ VPI C15-48) GN=rplI PE=3 SV=1
Length = 148
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 83 SPVTKEELVAEVARQLSISIEPENLHLPSPLSAFGEYEVPMRLPKAIP 130
V+ +E+ E +QL + I+ + + L P+ A G Y + ++L K +
Sbjct: 91 GTVSTKEVAEEAKKQLGLDIDKKKMKLDVPIKALGNYIIQIKLHKDVT 138
>sp|Q3ZZV8|RL9_DEHSC 50S ribosomal protein L9 OS=Dehalococcoides sp. (strain CBDB1)
GN=rplI PE=3 SV=1
Length = 151
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 69 LRSRASKDDPIELRSPVTKEELVAEVARQLSISIEPENLHLPSPLSAFGEYEVPMRLPK 127
L+++ D +L +T + AE+ +Q +I+ L L P+ G YEV +R K
Sbjct: 79 LKAKTGAKD--KLYGQITTTVIAAEIEKQTGKTIDKRKLELAEPIRQLGNYEVVIRFNK 135
>sp|A5FRT0|RL9_DEHSB 50S ribosomal protein L9 OS=Dehalococcoides sp. (strain BAV1)
GN=rplI PE=3 SV=1
Length = 151
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 69 LRSRASKDDPIELRSPVTKEELVAEVARQLSISIEPENLHLPSPLSAFGEYEVPMRLPK 127
L+++ D +L +T + AE+ +Q +I+ L L P+ G YEV +R K
Sbjct: 79 LKAKTGAKD--KLYGQITTTVIAAEIEKQTGKTIDKRKLELAEPIRQLGNYEVVIRFNK 135
>sp|B5Y878|RL9_COPPD 50S ribosomal protein L9 OS=Coprothermobacter proteolyticus (strain
ATCC 35245 / DSM 5265 / BT) GN=rplI PE=3 SV=1
Length = 148
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 12/50 (24%), Positives = 29/50 (58%)
Query: 80 ELRSPVTKEELVAEVARQLSISIEPENLHLPSPLSAFGEYEVPMRLPKAI 129
+L VT ++ + QL + ++ +++++P P+ + G Y+V + L K +
Sbjct: 88 KLYGAVTTRQIAHALKEQLKLEVDSKDINMPDPIKSVGVYDVDIHLFKDV 137
>sp|Q3Z914|RL9_DEHE1 50S ribosomal protein L9 OS=Dehalococcoides ethenogenes (strain
195) GN=rplI PE=3 SV=1
Length = 151
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 80 ELRSPVTKEELVAEVARQLSISIEPENLHLPSPLSAFGEYEVPMRLPK 127
+L VT + AE+ +Q +I+ L L P+ G YEV +R K
Sbjct: 88 KLYGQVTTTVIAAEIEKQTGKAIDKRKLELSEPIRQLGSYEVVIRFNK 135
>sp|Q8KAM4|RL9_CHLTE 50S ribosomal protein L9 OS=Chlorobium tepidum (strain ATCC 49652 /
DSM 12025 / TLS) GN=rplI PE=3 SV=1
Length = 152
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 9/98 (9%)
Query: 35 IRKSEDNMS---REFEKAARRLE----NARLVLRRFPNIEKLRSRASKDDPIELRSPVTK 87
IR +E + E ++ AR++E NAR + + + L+ A + +L VT
Sbjct: 37 IRATEGTLKALETEKKQQARKIELQRTNARELAAKIEQM-TLKVLAKAGESGKLFGTVTA 95
Query: 88 EELVAEVARQLSISIEPENLHLPSPLSAFGEYEVPMRL 125
+ +AE + + I+ +HL +P+ A G+YE +L
Sbjct: 96 GD-IAEALKAQGVDIDRRKIHLEAPIKALGKYEADAKL 132
>sp|A7HLG3|RL9_FERNB 50S ribosomal protein L9 OS=Fervidobacterium nodosum (strain ATCC
35602 / DSM 5306 / Rt17-B1) GN=rplI PE=3 SV=1
Length = 149
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 50 ARRLENARLVLRRFPNIEKLRSRASKDDPIELRSPVTKEELVAEVARQLSISIEPENLHL 109
A + E+ L+ ++ K++++A D +L +T + +++ LS + + + L
Sbjct: 60 ALKRESENLLSELHKHVFKIKAKAG--DGGKLFGSLTSANISDVISKTLSKEFDKKWIVL 117
Query: 110 PSPLSAFGEYEVPMRLPKAIPLPEGKVQ 137
+P+ A G Y+V ++LP + GK++
Sbjct: 118 DNPIKALGTYDVTVKLPGGV---SGKIK 142
>sp|Q72GV5|RL9_THET2 50S ribosomal protein L9 OS=Thermus thermophilus (strain HB27 /
ATCC BAA-163 / DSM 7039) GN=rplI PE=1 SV=1
Length = 148
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 80 ELRSPVTKEELVAEVARQLSISIEPENLHLPSPLSAFGEYEVPMRLPKAIPLPEGKVQWT 139
++ VT +++ ++RQ I+I+P+ L L P+ GEY + + P PE +Q
Sbjct: 87 KIYGSVTAKDIAEALSRQHGITIDPKRLALEKPIKELGEYVLTYK-----PHPEVPIQLK 141
Query: 140 LNV 142
++V
Sbjct: 142 VSV 144
>sp|P27151|RL9_THETH 50S ribosomal protein L9 OS=Thermus thermophilus GN=rplI PE=1 SV=3
Length = 148
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 80 ELRSPVTKEELVAEVARQLSISIEPENLHLPSPLSAFGEYEVPMRLPKAIPLPEGKVQWT 139
++ VT +++ ++RQ ++I+P+ L L P+ GEY + + P PE +Q
Sbjct: 87 KIYGSVTAKDIAEALSRQHGVTIDPKRLALEKPIKELGEYVLTYK-----PHPEVPIQLK 141
Query: 140 LNV 142
++V
Sbjct: 142 VSV 144
>sp|B3EKG2|RL9_CHLPB 50S ribosomal protein L9 OS=Chlorobium phaeobacteroides (strain
BS1) GN=rplI PE=3 SV=1
Length = 148
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 50 ARRLENARLVLRRFPN-IEKLRSR--ASKDDPIELRSPVTKEELVAEVARQLSISIEPEN 106
AR++E R+ R + +++L + A + +L VT + +AE +S++
Sbjct: 55 ARKIEQQRIAAREVADKVQQLNLKVLAKAGESGKLFGTVTSGD-IAEALSNEGVSVDRRK 113
Query: 107 LHLPSPLSAFGEYEVPMRL 125
+ L SP+ G YEV ++L
Sbjct: 114 ISLESPIKTLGAYEVGVKL 132
>sp|Q5SLQ1|RL9_THET8 50S ribosomal protein L9 OS=Thermus thermophilus (strain HB8 / ATCC
27634 / DSM 579) GN=rplI PE=1 SV=1
Length = 148
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 80 ELRSPVTKEELVAEVARQLSISIEPENLHLPSPLSAFGEYEVPMRLPKAIPLPEGKVQWT 139
++ VT +++ ++RQ ++I+P+ L L P+ GEY + + P PE +Q
Sbjct: 87 KIYGSVTAKDIAEALSRQHGVTIDPKRLALEKPIKELGEYVLTYK-----PHPEVPIQLK 141
Query: 140 LNV 142
++V
Sbjct: 142 VSV 144
>sp|Q2YUQ6|RL9_STAAB 50S ribosomal protein L9 OS=Staphylococcus aureus (strain bovine
RF122 / ET3-1) GN=rplI PE=3 SV=1
Length = 148
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 51 RRLENARLVLRRFPNIEKLRSRASKDDPIELRSPVTKEELVAEVARQLSISIEPENLHLP 110
+ +E+A+ + NIE + A + +L V+ +++ + Q I I+ + LP
Sbjct: 60 QEIEDAKALKETLSNIE-VEVSAKTGEGGKLFGSVSTKQIAEALKTQHDIKIDKRKMDLP 118
Query: 111 SPLSAFGEYEVPMRLPKAI 129
+ + + G VP++L K +
Sbjct: 119 NGIHSLGYTNVPVKLDKEV 137
>sp|Q4A166|RL9_STAS1 50S ribosomal protein L9 OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=rplI
PE=3 SV=1
Length = 148
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 51 RRLENARLVLRRFPNIEKLRSRASKDDPIELRSPVTKEELVAEVARQLSISIEPENLHLP 110
+ +E+A+ + + IE + A + +L V+ +++ + +Q I I+ + LP
Sbjct: 60 QEIEDAKKLKEQLSEIE-VEVSAKTGEGGKLFGSVSTKQITQALQQQHDIKIDKRKMDLP 118
Query: 111 SPLSAFGEYEVPMRLPKAI 129
+ + A G VP++L K +
Sbjct: 119 NGIHALGYTNVPVKLDKEV 137
>sp|P66319|RL9_STAAW 50S ribosomal protein L9 OS=Staphylococcus aureus (strain MW2)
GN=rplI PE=3 SV=1
Length = 148
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 51 RRLENARLVLRRFPNIEKLRSRASKDDPIELRSPVTKEELVAEVARQLSISIEPENLHLP 110
+ +E+A+ + NIE + A + +L V+ +++ + Q I I+ + LP
Sbjct: 60 QEIEDAKALKETLSNIE-VEVSAKTGEGGKLFGSVSTKQIAEALKAQHDIKIDKRKMDLP 118
Query: 111 SPLSAFGEYEVPMRLPKAI 129
+ + + G VP++L K +
Sbjct: 119 NGIHSLGYTNVPVKLDKEV 137
>sp|A8YYT8|RL9_STAAT 50S ribosomal protein L9 OS=Staphylococcus aureus (strain USA300 /
TCH1516) GN=rplI PE=3 SV=1
Length = 148
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 51 RRLENARLVLRRFPNIEKLRSRASKDDPIELRSPVTKEELVAEVARQLSISIEPENLHLP 110
+ +E+A+ + NIE + A + +L V+ +++ + Q I I+ + LP
Sbjct: 60 QEIEDAKALKETLSNIE-VEVSAKTGEGGKLFGSVSTKQIAEALKAQHDIKIDKRKMDLP 118
Query: 111 SPLSAFGEYEVPMRLPKAI 129
+ + + G VP++L K +
Sbjct: 119 NGIHSLGYTNVPVKLDKEV 137
>sp|Q6GD75|RL9_STAAS 50S ribosomal protein L9 OS=Staphylococcus aureus (strain MSSA476)
GN=rplI PE=3 SV=1
Length = 148
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 51 RRLENARLVLRRFPNIEKLRSRASKDDPIELRSPVTKEELVAEVARQLSISIEPENLHLP 110
+ +E+A+ + NIE + A + +L V+ +++ + Q I I+ + LP
Sbjct: 60 QEIEDAKALKETLSNIE-VEVSAKTGEGGKLFGSVSTKQIAEALKAQHDIKIDKRKMDLP 118
Query: 111 SPLSAFGEYEVPMRLPKAI 129
+ + + G VP++L K +
Sbjct: 119 NGIHSLGYTNVPVKLDKEV 137
>sp|Q6GKT0|RL9_STAAR 50S ribosomal protein L9 OS=Staphylococcus aureus (strain MRSA252)
GN=rplI PE=3 SV=1
Length = 148
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 51 RRLENARLVLRRFPNIEKLRSRASKDDPIELRSPVTKEELVAEVARQLSISIEPENLHLP 110
+ +E+A+ + NIE + A + +L V+ +++ + Q I I+ + LP
Sbjct: 60 QEIEDAKALKETLSNIE-VEVSAKTGEGGKLFGSVSTKQIAEALKAQHDIKIDKRKMDLP 118
Query: 111 SPLSAFGEYEVPMRLPKAI 129
+ + + G VP++L K +
Sbjct: 119 NGIHSLGYTNVPVKLDKEV 137
>sp|P66318|RL9_STAAN 50S ribosomal protein L9 OS=Staphylococcus aureus (strain N315)
GN=rplI PE=1 SV=1
Length = 148
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 51 RRLENARLVLRRFPNIEKLRSRASKDDPIELRSPVTKEELVAEVARQLSISIEPENLHLP 110
+ +E+A+ + NIE + A + +L V+ +++ + Q I I+ + LP
Sbjct: 60 QEIEDAKALKETLSNIE-VEVSAKTGEGGKLFGSVSTKQIAEALKAQHDIKIDKRKMDLP 118
Query: 111 SPLSAFGEYEVPMRLPKAI 129
+ + + G VP++L K +
Sbjct: 119 NGIHSLGYTNVPVKLDKEV 137
>sp|P66317|RL9_STAAM 50S ribosomal protein L9 OS=Staphylococcus aureus (strain Mu50 /
ATCC 700699) GN=rplI PE=1 SV=1
Length = 148
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 51 RRLENARLVLRRFPNIEKLRSRASKDDPIELRSPVTKEELVAEVARQLSISIEPENLHLP 110
+ +E+A+ + NIE + A + +L V+ +++ + Q I I+ + LP
Sbjct: 60 QEIEDAKALKETLSNIE-VEVSAKTGEGGKLFGSVSTKQIAEALKAQHDIKIDKRKMDLP 118
Query: 111 SPLSAFGEYEVPMRLPKAI 129
+ + + G VP++L K +
Sbjct: 119 NGIHSLGYTNVPVKLDKEV 137
>sp|A6QD54|RL9_STAAE 50S ribosomal protein L9 OS=Staphylococcus aureus (strain Newman)
GN=rplI PE=3 SV=1
Length = 148
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 51 RRLENARLVLRRFPNIEKLRSRASKDDPIELRSPVTKEELVAEVARQLSISIEPENLHLP 110
+ +E+A+ + NIE + A + +L V+ +++ + Q I I+ + LP
Sbjct: 60 QEIEDAKALKETLSNIE-VEVSAKTGEGGKLFGSVSTKQIAEALKAQHDIKIDKRKMDLP 118
Query: 111 SPLSAFGEYEVPMRLPKAI 129
+ + + G VP++L K +
Sbjct: 119 NGIHSLGYTNVPVKLDKEV 137
>sp|Q5HJY1|RL9_STAAC 50S ribosomal protein L9 OS=Staphylococcus aureus (strain COL)
GN=rplI PE=3 SV=1
Length = 148
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 51 RRLENARLVLRRFPNIEKLRSRASKDDPIELRSPVTKEELVAEVARQLSISIEPENLHLP 110
+ +E+A+ + NIE + A + +L V+ +++ + Q I I+ + LP
Sbjct: 60 QEIEDAKALKETLSNIE-VEVSAKTGEGGKLFGSVSTKQIAEALKAQHDIKIDKRKMDLP 118
Query: 111 SPLSAFGEYEVPMRLPKAI 129
+ + + G VP++L K +
Sbjct: 119 NGIHSLGYTNVPVKLDKEV 137
>sp|A5INQ6|RL9_STAA9 50S ribosomal protein L9 OS=Staphylococcus aureus (strain JH9)
GN=rplI PE=3 SV=1
Length = 148
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 51 RRLENARLVLRRFPNIEKLRSRASKDDPIELRSPVTKEELVAEVARQLSISIEPENLHLP 110
+ +E+A+ + NIE + A + +L V+ +++ + Q I I+ + LP
Sbjct: 60 QEIEDAKALKETLSNIE-VEVSAKTGEGGKLFGSVSTKQIAEALKAQHDIKIDKRKMDLP 118
Query: 111 SPLSAFGEYEVPMRLPKAI 129
+ + + G VP++L K +
Sbjct: 119 NGIHSLGYTNVPVKLDKEV 137
>sp|Q2G2T3|RL9_STAA8 50S ribosomal protein L9 OS=Staphylococcus aureus (strain NCTC
8325) GN=rplI PE=3 SV=1
Length = 150
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 51 RRLENARLVLRRFPNIEKLRSRASKDDPIELRSPVTKEELVAEVARQLSISIEPENLHLP 110
+ +E+A+ + NIE + A + +L V+ +++ + Q I I+ + LP
Sbjct: 62 QEIEDAKALKETLSNIE-VEVSAKTGEGGKLFGSVSTKQIAEALKAQHDIKIDKRKMDLP 120
Query: 111 SPLSAFGEYEVPMRLPKAI 129
+ + + G VP++L K +
Sbjct: 121 NGIHSLGYTNVPVKLDKEV 139
>sp|Q2FKP1|RL9_STAA3 50S ribosomal protein L9 OS=Staphylococcus aureus (strain USA300)
GN=rplI PE=3 SV=1
Length = 148
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 51 RRLENARLVLRRFPNIEKLRSRASKDDPIELRSPVTKEELVAEVARQLSISIEPENLHLP 110
+ +E+A+ + NIE + A + +L V+ +++ + Q I I+ + LP
Sbjct: 60 QEIEDAKALKETLSNIE-VEVSAKTGEGGKLFGSVSTKQIAEALKAQHDIKIDKRKMDLP 118
Query: 111 SPLSAFGEYEVPMRLPKAI 129
+ + + G VP++L K +
Sbjct: 119 NGIHSLGYTNVPVKLDKEV 137
>sp|A6TXG5|RL9_STAA2 50S ribosomal protein L9 OS=Staphylococcus aureus (strain JH1)
GN=rplI PE=3 SV=1
Length = 148
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 51 RRLENARLVLRRFPNIEKLRSRASKDDPIELRSPVTKEELVAEVARQLSISIEPENLHLP 110
+ +E+A+ + NIE + A + +L V+ +++ + Q I I+ + LP
Sbjct: 60 QEIEDAKALKETLSNIE-VEVSAKTGEGGKLFGSVSTKQIAEALKAQHDIKIDKRKMDLP 118
Query: 111 SPLSAFGEYEVPMRLPKAI 129
+ + + G VP++L K +
Sbjct: 119 NGIHSLGYTNVPVKLDKEV 137
>sp|A7WWQ0|RL9_STAA1 50S ribosomal protein L9 OS=Staphylococcus aureus (strain Mu3 /
ATCC 700698) GN=rplI PE=3 SV=1
Length = 148
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 51 RRLENARLVLRRFPNIEKLRSRASKDDPIELRSPVTKEELVAEVARQLSISIEPENLHLP 110
+ +E+A+ + NIE + A + +L V+ +++ + Q I I+ + LP
Sbjct: 60 QEIEDAKALKETLSNIE-VEVSAKTGEGGKLFGSVSTKQIAEALKAQHDIKIDKRKMDLP 118
Query: 111 SPLSAFGEYEVPMRLPKAI 129
+ + + G VP++L K +
Sbjct: 119 NGIHSLGYTNVPVKLDKEV 137
>sp|Q756G8|ATG7_ASHGO Ubiquitin-like modifier-activating enzyme ATG7 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=ATG7 PE=3 SV=1
Length = 625
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 10/62 (16%)
Query: 6 AVPNIEKFAHLIREQRRICQPVEEEEVKVIRKSEDNMSREFEKAARRLENARLVLRRFPN 65
A+ I+KF++ I + + +C + EE +VIR S + R + LV+R N
Sbjct: 157 ALTEIDKFSNFIEQNKILCGVLNEETGEVIRASRHELERY----------STLVVRDTSN 206
Query: 66 IE 67
IE
Sbjct: 207 IE 208
>sp|A6Q3Q0|RL9_NITSB 50S ribosomal protein L9 OS=Nitratiruptor sp. (strain SB155-2)
GN=rplI PE=3 SV=1
Length = 147
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 20/133 (15%)
Query: 16 LIREQRRICQPVEEEEVKVIRKSEDNMSREFEKAAR-------RLENARLVLRRFPNIEK 68
LI++ + + + E +EVK ++R F K A + E A+ IEK
Sbjct: 5 LIKDVKNLGKAGEVKEVKDGYGKNFLIARGFAKLATPDVIEAWKKEQAKKAQEEAAEIEK 64
Query: 69 LRSRASKDDPIEL------------RSPVTKEELVAEVARQLSISIEPENLHLPSPLSAF 116
L+ K + +L +T +E+ E+ +Q I I+ +++ + P+
Sbjct: 65 LKQLKEKIESTKLVIKHKAGANGALFGAITNKEVAEELKKQ-GIEIDKKHIDIHPPIKQA 123
Query: 117 GEYEVPMRLPKAI 129
GEYE+ ++L I
Sbjct: 124 GEYEIDVKLGHGI 136
>sp|C4ZDL0|RL9_EUBR3 50S ribosomal protein L9 OS=Eubacterium rectale (strain ATCC 33656
/ VPI 0990) GN=rplI PE=3 SV=1
Length = 148
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 51/106 (48%), Gaps = 15/106 (14%)
Query: 24 CQPVEEEEVKVIRKSEDNMSRE-FEKA---ARRLENARLVLRRFPNIEKLRSRASKDDPI 79
P ++K+ + D +++E +E A A+ +EN ++V+ KLRS +
Sbjct: 39 ATPKNLNDLKLQNQHADKVAQENYESALALAKVVENTKVVV-------KLRS----GEGG 87
Query: 80 ELRSPVTKEELVAEVARQLSISIEPENLHLPSPLSAFGEYEVPMRL 125
++ +E+ A Q + ++ + + L + A G YEVP++L
Sbjct: 88 RTFGSISTKEISAAAKEQHGLELDKKKMQLNESIKALGNYEVPVKL 133
>sp|A8GLX8|RL9_RICAH 50S ribosomal protein L9 OS=Rickettsia akari (strain Hartford)
GN=rplI PE=3 SV=1
Length = 171
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 72 RASKDDPIELRSPVTKEELVAEVARQLSISIEPENLHLPSPLSAFGEYEVPMRL 125
R + DD +L VT +E+ ++++ +S +I N+ L + + G Y V +RL
Sbjct: 81 RQASDDG-KLFGSVTNKEIADKLSKNVSYNISHSNIILDKQIKSTGVYTVEIRL 133
>sp|A9WHR4|RL9_CHLAA 50S ribosomal protein L9 OS=Chloroflexus aurantiacus (strain ATCC
29366 / DSM 635 / J-10-fl) GN=rplI PE=3 SV=1
Length = 148
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 81 LRSPVTKEELVAEVARQLSISIEPENLHLPSPLSAFGEYEVPMRLPKAIP 130
L VT ++ A++ I I+ + L P+ GEYEVP+ L +
Sbjct: 89 LYGSVTNADIAAKLHEVAGIEIDRRKIGLEDPIKRTGEYEVPVELMSGVS 138
>sp|Q01QR6|RL9_SOLUE 50S ribosomal protein L9 OS=Solibacter usitatus (strain Ellin6076)
GN=rplI PE=3 SV=1
Length = 148
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 68 KLRSRASKDDPIELRSPVTKEELVAEVARQLSISIEPENLHLPSPLSAFGEYEVPMRLPK 127
++ +A ++D +L VT +++ + Q + +I+ + L P+ GE+++P+RL K
Sbjct: 78 RISQKAGEND--QLFGSVTSKDIADALTAQ-NYNIDRRKIQLDEPIKTLGEFKIPVRLYK 134
Query: 128 AI 129
+
Sbjct: 135 DV 136
>sp|A8F7L9|RL9_THELT 50S ribosomal protein L9 OS=Thermotoga lettingae (strain ATCC
BAA-301 / DSM 14385 / TMO) GN=rplI PE=3 SV=1
Length = 151
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 80 ELRSPVTKEELVAEVARQLSISIEPENLHLPSPLSAFGEYEVPMRLPKAIPLPEGKVQWT 139
+L +T L +++ + I+ + +++ PL G Y++ MRLP G V+ T
Sbjct: 88 KLFGALTSTNLSEILSKNSGVEIDKKWINMDKPLKETGLYDIEMRLP-------GGVRGT 140
Query: 140 LNVKVRG 146
+ V++ G
Sbjct: 141 IKVEIVG 147
>sp|Q93CB7|MTRB_MYCPA Sensor histidine kinase MtrB OS=Mycobacterium paratuberculosis
(strain ATCC BAA-968 / K-10) GN=mtrB PE=3 SV=1
Length = 565
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 17 IREQRRICQPVEEEEV--KVIRKSEDNMSR---EFEKAARRLENARLVLRRFPNIEKLRS 71
+R RI + E + ++ + ED+M+R F A L L F N+++
Sbjct: 241 VRSASRIAERFAEGHLSERMPVRGEDDMARLAMSFNDMAESLSRQITQLEEFGNLQR--- 297
Query: 72 RASKDDPIELRSPVTKEELVAEVARQLSISIEP 104
R + D ELR+P+T + A++ S ++P
Sbjct: 298 RFTSDVSHELRTPLTTVRMAADLIYDHSADLDP 330
>sp|A8AU89|RL9_STRGC 50S ribosomal protein L9 OS=Streptococcus gordonii (strain Challis
/ ATCC 35105 / CH1 / DL1 / V288) GN=rplI PE=3 SV=1
Length = 150
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/48 (22%), Positives = 28/48 (58%)
Query: 83 SPVTKEELVAEVARQLSISIEPENLHLPSPLSAFGEYEVPMRLPKAIP 130
+T +++ E+ +Q I ++ N+ + SP+ + G +VP+++ + I
Sbjct: 93 GSITSKKIAEELEKQFGIKLDKRNIKVDSPIRSVGLIDVPVKIYQDIT 140
>sp|A5IIS0|RL9_THEP1 50S ribosomal protein L9 OS=Thermotoga petrophila (strain RKU-1 /
ATCC BAA-488 / DSM 13995) GN=rplI PE=3 SV=1
Length = 149
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 83 SPVTKEELVAEVARQLSISIEPENLHLPSPLSAFGEYEVPMRLPKAIPLPEGKVQWTLNV 142
VT L E+++ + ++ L P+ GEY + + LP G V+ T+ +
Sbjct: 91 GAVTAATLAEEISKTTGLKLDKRWFKLDKPIKELGEYSLEVNLP-------GGVKDTIKI 143
Query: 143 KV 144
KV
Sbjct: 144 KV 145
>sp|A3CRA9|RL9_STRSV 50S ribosomal protein L9 OS=Streptococcus sanguinis (strain SK36)
GN=rplI PE=3 SV=1
Length = 150
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/48 (22%), Positives = 28/48 (58%)
Query: 83 SPVTKEELVAEVARQLSISIEPENLHLPSPLSAFGEYEVPMRLPKAIP 130
+T +++ E+ +Q I I+ ++ + SP+ + G +VP+++ + I
Sbjct: 93 GSITSKKIAEELQKQFGIKIDKRHIKVDSPIRSIGLIDVPVKIYQDIA 140
>sp|Q06179|FMP27_YEAST Protein FMP27, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=FMP27 PE=1 SV=1
Length = 2628
Score = 30.0 bits (66), Expect = 5.2, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 9 NIEKFAHLIREQRRICQPVEEEEVKVIRK------SEDNMSREFEKAARRLENARLVLRR 62
N+ L+ ++ + + E+ + IRK SE+N++ KA +ENA L+L+
Sbjct: 1866 NVSLRTDLVEKRVTVLKKFREKLQEGIRKNKSAGVSEENLNDLLSKANSSVENAELLLKD 1925
Query: 63 FPNIEKLRSRASKDDPIELRS 83
F I K + P S
Sbjct: 1926 FQKIFKQHEAGQTEQPFHFDS 1946
>sp|P59963|MTRB_MYCBO Sensor histidine kinase MtrB OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=mtrB PE=3 SV=1
Length = 567
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 17 IREQRRICQPVEEEEV--KVIRKSEDNMSR---EFEKAARRLENARLVLRRFPNIEKLRS 71
+R RI + E + ++ + ED+M+R F A L L F N+++
Sbjct: 241 VRSASRIAERFAEGHLSERMPVRGEDDMARLAVSFNDMAESLSRQIAQLEEFGNLQR--- 297
Query: 72 RASKDDPIELRSPVTKEELVAEVARQLSISIEP 104
R + D ELR+P+T + A++ S ++P
Sbjct: 298 RFTSDVSHELRTPLTTVRMAADLIYDHSADLDP 330
>sp|C0QBV1|RL9_DESAH 50S ribosomal protein L9 OS=Desulfobacterium autotrophicum (strain
ATCC 43914 / DSM 3382 / HRM2) GN=rplI PE=3 SV=1
Length = 151
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
Query: 33 KVIRKSEDNMSREFEKAARRLENARLVLRRFPNIEKLRSRASKDDPIELRSPVTKEELVA 92
K+I++++ + K R+L A+ + R N+E +A + L +T ++
Sbjct: 45 KIIQQAKAKFDLQIAKE-RKL--AQEMAERLKNVE-CTIKAKVHEEFRLYGSITSHDIKD 100
Query: 93 EVARQLSISIEPENLHLPSPLSAFGEYEVPMRLPKAI 129
+ Q +I +E + LP P+ GEY+VP+RL K +
Sbjct: 101 ALNAQ-NIILERRTILLPEPIRETGEYKVPIRLYKDV 136
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.134 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,833,034
Number of Sequences: 539616
Number of extensions: 2035766
Number of successful extensions: 7975
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 122
Number of HSP's that attempted gapping in prelim test: 7910
Number of HSP's gapped (non-prelim): 188
length of query: 147
length of database: 191,569,459
effective HSP length: 106
effective length of query: 41
effective length of database: 134,370,163
effective search space: 5509176683
effective search space used: 5509176683
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)