Query 032091
Match_columns 147
No_of_seqs 127 out of 1167
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 15:13:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032091.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032091hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1div_A Ribosomal protein L9; r 100.0 1E-31 3.5E-36 207.5 12.6 117 1-146 31-147 (149)
2 1nkw_F 50S ribosomal protein L 100.0 4E-31 1.4E-35 203.7 12.8 115 1-146 30-144 (146)
3 3r8s_H 50S ribosomal protein L 100.0 5.3E-31 1.8E-35 203.5 10.8 116 1-146 31-148 (149)
4 3v2d_I 50S ribosomal protein L 100.0 6.2E-31 2.1E-35 203.0 9.5 116 1-146 31-146 (148)
5 3bbo_J Ribosomal protein L9; l 99.9 3.1E-29 1.1E-33 201.5 0.2 116 1-146 80-196 (197)
6 2hba_A BL17, 50S ribosomal pro 94.9 0.012 3.9E-07 37.9 2.0 21 1-21 31-51 (52)
7 3ghd_A A cystathionine beta-sy 67.0 2.3 7.7E-05 27.3 1.4 24 79-103 32-55 (70)
8 3gby_A Uncharacterized protein 55.7 6.5 0.00022 26.3 2.2 20 78-97 108-127 (128)
9 3kpb_A Uncharacterized protein 49.9 6.5 0.00022 25.8 1.4 18 79-96 103-120 (122)
10 3k6e_A CBS domain protein; str 49.4 10 0.00035 27.0 2.5 21 77-97 123-143 (156)
11 2ef7_A Hypothetical protein ST 49.0 9.9 0.00034 25.3 2.3 20 78-97 107-126 (133)
12 3lqn_A CBS domain protein; csg 48.1 11 0.00037 25.8 2.4 20 78-97 125-144 (150)
13 2yzi_A Hypothetical protein PH 47.6 6.6 0.00023 26.4 1.2 19 79-97 112-130 (138)
14 2nyc_A Nuclear protein SNF4; b 44.7 12 0.0004 25.1 2.1 18 79-96 124-141 (144)
15 3fio_A A cystathionine beta-sy 43.8 9.7 0.00033 22.7 1.4 19 79-97 32-50 (70)
16 3oco_A Hemolysin-like protein 43.1 14 0.00049 25.5 2.4 20 78-97 125-144 (153)
17 3lv9_A Putative transporter; C 42.5 12 0.00041 25.6 1.9 19 78-96 127-145 (148)
18 2emq_A Hypothetical conserved 41.8 14 0.00047 25.4 2.1 19 79-97 122-140 (157)
19 3jtf_A Magnesium and cobalt ef 40.6 28 0.00095 23.3 3.5 19 78-96 108-126 (129)
20 3ctu_A CBS domain protein; str 40.1 14 0.00049 25.4 2.0 20 78-97 124-143 (156)
21 3kxr_A Magnesium transporter, 38.9 31 0.0011 25.8 3.9 22 78-99 156-177 (205)
22 2uv4_A 5'-AMP-activated protei 38.4 16 0.00053 25.2 2.0 17 79-95 134-150 (152)
23 1yav_A Hypothetical protein BS 38.1 19 0.00064 24.9 2.4 20 78-97 124-143 (159)
24 3hf7_A Uncharacterized CBS-dom 37.8 22 0.00076 23.9 2.7 19 78-96 109-127 (130)
25 2p9m_A Hypothetical protein MJ 37.8 38 0.0013 22.4 3.8 19 78-96 118-136 (138)
26 1o50_A CBS domain-containing p 37.5 17 0.00059 25.2 2.1 19 79-97 136-154 (157)
27 3i8n_A Uncharacterized protein 36.0 25 0.00085 23.5 2.7 18 78-95 111-128 (130)
28 3nqr_A Magnesium and cobalt ef 34.6 25 0.00086 23.3 2.5 18 78-95 108-125 (127)
29 2p5k_A Arginine repressor; DNA 33.6 18 0.00063 21.6 1.5 33 83-118 18-50 (64)
30 4gqw_A CBS domain-containing p 33.3 39 0.0013 22.5 3.4 20 78-97 125-144 (152)
31 3lhh_A CBS domain protein; str 33.1 20 0.00069 25.5 1.9 19 78-96 146-164 (172)
32 3sl7_A CBS domain-containing p 31.4 51 0.0017 22.8 3.8 20 78-97 138-157 (180)
33 2pfi_A Chloride channel protei 30.8 58 0.002 22.1 4.0 21 79-99 130-150 (164)
34 3fhm_A Uncharacterized protein 30.8 27 0.00091 24.4 2.2 19 79-97 68-86 (165)
35 3ocm_A Putative membrane prote 29.9 48 0.0017 23.8 3.6 19 78-96 139-157 (173)
36 1pbj_A Hypothetical protein; s 28.8 16 0.00055 23.8 0.7 18 79-96 105-122 (125)
37 2ahq_A Sigma-54, RNA polymeras 28.1 18 0.00062 24.3 0.8 23 84-107 37-59 (76)
38 3k2v_A Putative D-arabinose 5- 28.0 30 0.001 23.6 2.0 19 78-96 70-88 (149)
39 2o16_A Acetoin utilization pro 27.4 31 0.0011 24.0 2.1 19 79-97 118-136 (160)
40 3lfr_A Putative metal ION tran 26.7 20 0.00068 24.3 0.9 19 78-96 109-127 (136)
41 2rih_A Conserved protein with 25.7 18 0.0006 24.5 0.4 17 79-95 111-127 (141)
42 2j9l_A Chloride channel protei 25.5 39 0.0013 23.6 2.3 20 77-96 58-77 (185)
43 2oux_A Magnesium transporter; 25.4 38 0.0013 26.6 2.4 20 78-97 241-260 (286)
44 2rc3_A CBS domain; in SITU pro 25.3 31 0.0011 22.9 1.6 19 79-97 114-132 (135)
45 3ddj_A CBS domain-containing p 24.9 38 0.0013 25.7 2.3 20 78-97 267-286 (296)
46 4fry_A Putative signal-transdu 24.9 42 0.0014 22.9 2.3 19 79-97 118-136 (157)
47 3fv6_A YQZB protein; CBS domai 24.6 26 0.00089 24.3 1.2 18 80-97 128-145 (159)
48 2d7p_A Filamin-C; beta-sandwic 24.5 94 0.0032 21.4 4.1 27 113-140 73-99 (112)
49 1q1v_A DEK protein; winged-hel 23.9 36 0.0012 22.3 1.7 25 82-106 30-55 (70)
50 2v8q_E 5'-AMP-activated protei 22.9 41 0.0014 26.1 2.1 21 79-99 306-326 (330)
51 2amw_A Hypothetical protein NE 22.5 34 0.0012 21.7 1.4 34 83-117 38-71 (83)
52 3lwf_A LIN1550 protein, putati 22.0 1.1E+02 0.0038 22.5 4.3 57 32-95 47-103 (159)
53 1vr9_A CBS domain protein/ACT 21.5 52 0.0018 24.3 2.4 20 79-98 113-132 (213)
54 2ee9_A Filamin-B; beta-sandwic 20.9 1.3E+02 0.0043 20.5 4.1 27 113-140 62-88 (95)
55 1dv5_A APO-DCP, APO-D-alanyl c 20.9 39 0.0013 21.5 1.4 35 82-117 36-70 (80)
56 2d7n_A Filamin-C; beta-sandwic 20.9 1.3E+02 0.0044 20.2 4.2 27 113-140 54-80 (93)
57 3a1y_A 50S ribosomal protein P 20.3 67 0.0023 20.2 2.4 23 84-107 16-38 (58)
58 4esy_A CBS domain containing m 20.2 14 0.00049 26.1 -1.0 18 79-96 145-162 (170)
No 1
>1div_A Ribosomal protein L9; rRNA-binding; 2.60A {Geobacillus stearothermophilus} SCOP: d.99.1.1 d.100.1.1 PDB: 1giy_K 1yl3_K 2b66_I 2b9n_I 2b9p_I 487d_K
Probab=99.97 E-value=1e-31 Score=207.55 Aligned_cols=117 Identities=17% Similarity=0.239 Sum_probs=110.3
Q ss_pred CCCcccccccHHHHHHHHHHHHhcCcchHHHHHHhhhhHHHHHHHHHHHHHHhccCceEEEEcccccccccccCCCCCCc
Q 032091 1 MPKLLAVPNIEKFAHLIREQRRICQPVEEEEVKVIRKSEDNMSREFEKAARRLENARLVLRRFPNIEKLRSRASKDDPIE 80 (147)
Q Consensus 1 ~p~~la~~a~~~~~~~~~~~~~~~~~~~~e~~k~i~k~~~~~~~eae~~a~~L~~~~l~i~~~~g~~~~~~~~~~~~~gk 80 (147)
||++||++||..|++.++++++..+. +.++.++++++++++|++..+++.+++|++| +
T Consensus 31 iP~glA~~AT~~n~~~~e~~~~~~~~-----------~~~~~~~~A~~~a~~L~~~~v~i~~k~g~~g-----------k 88 (149)
T 1div_A 31 FKQGLAIEATPANLKALEAQKQKEQR-----------QAAEELANAKKLKEQLEKLTVTIPAKAGEGG-----------R 88 (149)
T ss_dssp TTTTSEEECCHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHTTCCEEEEECBCGGG-----------E
T ss_pred ccCCceecCCHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHcCCeEEEEEEeCCCC-----------c
Confidence 79999999999999999988877665 7778999999999999999999999999765 9
Q ss_pred eeeccCHHHHHHHHHhhcCCccccccccCCCccccceeEEEEEEcCCCCCCCCCceEEEEEEEEEc
Q 032091 81 LRSPVTKEELVAEVARQLSISIEPENLHLPSPLSAFGEYEVPMRLPKAIPLPEGKVQWTLNVKVRG 146 (147)
Q Consensus 81 LfGSVT~~dI~~~l~~q~gi~Idk~~I~l~~pIk~lG~~~V~I~L~~~V~~~~~~~~a~l~V~V~~ 146 (147)
||||||++||+++|++++|++|||+.|.||+|||++|+|+|+|+||++| +++|+|+|.+
T Consensus 89 lfGSVt~~dIa~al~~~~g~~idk~~I~l~~~Ik~~G~~~v~vkLh~~V-------~a~i~v~V~~ 147 (149)
T 1div_A 89 LFGSITSKQIAESLQAQHGLKLDKRKIELADAIRALGYTNVPVKLHPEV-------TATLKVHVTE 147 (149)
T ss_dssp EEEEECHHHHHHHHHHHHCCCCCGGGBCCCSCEEESEEEEEEEEEETTE-------EEEEEEEEEE
T ss_pred EEeecCHHHHHHHHHHhhCCeechheEECCCCccccEEEEEEEEECCCC-------EEEEEEEEEe
Confidence 9999999999999999889999999999999999999999999999999 9999999985
No 2
>1nkw_F 50S ribosomal protein L9; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1nwx_F* 1nwy_F* 1sm1_F* 1xbp_F* 1pnu_F 1pny_F 1vor_I 1vou_I 1vow_I 1voy_I 1vp0_I
Probab=99.97 E-value=4e-31 Score=203.66 Aligned_cols=115 Identities=17% Similarity=0.311 Sum_probs=108.4
Q ss_pred CCCcccccccHHHHHHHHHHHHhcCcchHHHHHHhhhhHHHHHHHHHHHHHHhccCceEEEEcccccccccccCCCCCCc
Q 032091 1 MPKLLAVPNIEKFAHLIREQRRICQPVEEEEVKVIRKSEDNMSREFEKAARRLENARLVLRRFPNIEKLRSRASKDDPIE 80 (147)
Q Consensus 1 ~p~~la~~a~~~~~~~~~~~~~~~~~~~~e~~k~i~k~~~~~~~eae~~a~~L~~~~l~i~~~~g~~~~~~~~~~~~~gk 80 (147)
||++||++||..|++.++++++..+. +.++.++++++++++|++..+++.+++| +| +
T Consensus 30 iP~glA~~AT~~n~~~~e~~~~~~~~-----------~~~~~~~~A~~~a~~L~~~~v~i~~k~g-~g-----------k 86 (146)
T 1nkw_F 30 IPQGLAVSATRTNMKTLEAQLRSIEK-----------RQAQEKAVAEDLASRLNGVAVELSVRAG-EG-----------K 86 (146)
T ss_pred ccCCceecCCHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhcCCEEEEEEEcC-CC-----------c
Confidence 79999999999999999998877665 7778999999999999999999999998 64 9
Q ss_pred eeeccCHHHHHHHHHhhcCCccccccccCCCccccceeEEEEEEcCCCCCCCCCceEEEEEEEEEc
Q 032091 81 LRSPVTKEELVAEVARQLSISIEPENLHLPSPLSAFGEYEVPMRLPKAIPLPEGKVQWTLNVKVRG 146 (147)
Q Consensus 81 LfGSVT~~dI~~~l~~q~gi~Idk~~I~l~~pIk~lG~~~V~I~L~~~V~~~~~~~~a~l~V~V~~ 146 (147)
||||||++||+++|+++ |++|||+.|.||+|||++|+|+|+|+||++| +++|+|+|.+
T Consensus 87 lfGSVt~~dIa~al~~~-g~~idk~~I~l~~~Ik~~G~~~v~vkLh~~V-------~a~i~v~V~~ 144 (146)
T 1nkw_F 87 IYGAVTHQDVANSLDQL-GFDVDRRKIDMPKTVKEVGEYDIAYRAHPEV-------TIPMKLVVHA 144 (146)
T ss_pred eeeccCHHHHHHHHHHc-CCeechheEECCCcccccEEEEEEEEECCCC-------EEEEEEEEEe
Confidence 99999999999999998 9999999999999999999999999999999 9999999985
No 3
>3r8s_H 50S ribosomal protein L9; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_F 1p86_F 1vs8_H 1vs6_H 2aw4_H 2awb_H 2gya_F 2gyc_F 1vt2_H 2i2v_H 2j28_H 2i2t_H* 2qao_H* 2qba_H* 2qbc_H* 2qbe_H 2qbg_H 2qbi_H* 2qbk_H* 2qov_H ...
Probab=99.97 E-value=5.3e-31 Score=203.54 Aligned_cols=116 Identities=16% Similarity=0.233 Sum_probs=107.8
Q ss_pred CCCcccccccHHHHHHHHHHHHhcCcchHHHHHHhhhhHHHHHHHHHHHHHHhccC-ceEEEEcccccccccccCCCCCC
Q 032091 1 MPKLLAVPNIEKFAHLIREQRRICQPVEEEEVKVIRKSEDNMSREFEKAARRLENA-RLVLRRFPNIEKLRSRASKDDPI 79 (147)
Q Consensus 1 ~p~~la~~a~~~~~~~~~~~~~~~~~~~~e~~k~i~k~~~~~~~eae~~a~~L~~~-~l~i~~~~g~~~~~~~~~~~~~g 79 (147)
||++||++||..|++.++++++..+. +.++.++++++++++|++. .+++.+++|++ |
T Consensus 31 iP~glA~~AT~~n~k~~e~~~~~~~~-----------~~~~~~~~A~~~~~~L~~~~~v~i~~k~g~~-----------g 88 (149)
T 3r8s_H 31 VPQGKAVPATKKNIEFFEARRAELEA-----------KLAEVLAAANARAEKINALETVTIASKAGDE-----------G 88 (149)
T ss_dssp SSSSSEECCCSHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHTTCCEEEEECBCTT-----------S
T ss_pred ccCCceeeCCHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhcCCcEEEEEEEcCCC-----------C
Confidence 79999999999999999988776555 7778899999999999997 99999999865 5
Q ss_pred ceeeccCHHHHHHHHHhhcCCccccccccCCC-ccccceeEEEEEEcCCCCCCCCCceEEEEEEEEEc
Q 032091 80 ELRSPVTKEELVAEVARQLSISIEPENLHLPS-PLSAFGEYEVPMRLPKAIPLPEGKVQWTLNVKVRG 146 (147)
Q Consensus 80 kLfGSVT~~dI~~~l~~q~gi~Idk~~I~l~~-pIk~lG~~~V~I~L~~~V~~~~~~~~a~l~V~V~~ 146 (147)
+||||||++||+++|+++ |++|||+.|.||+ |||++|+|+|+|+||++| +++|+|+|++
T Consensus 89 klfGSVt~~dIa~al~~~-g~~idk~~I~l~~~pIk~~G~~~v~v~Lh~~V-------~a~i~v~V~~ 148 (149)
T 3r8s_H 89 KLFGSIGTRDIADAVTAA-GVEVAKSEVRLPNGVLRTTGEHEVSFQVHSEV-------FAKVIVNVVA 148 (149)
T ss_dssp EEEEEECHHHHHHHHHTT-SCCCCTTSEECSSCCEEESEEEEEEECSSSSC-------CCCEEEEEEE
T ss_pred ceEcccCHHHHHHHHHHc-CCceehheEEcCCccccceEEEEEEEEECCCC-------EEEEEEEEEE
Confidence 999999999999999887 9999999999997 999999999999999999 9999999985
No 4
>3v2d_I 50S ribosomal protein L9; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_I 2jl6_I 2jl8_I 2v47_I 2v49_I 2wdi_I 2wdj_I 2wdl_I 2wdn_I 2wh2_I 2x9s_I 2x9u_I 2xg0_I 2xg2_I 3hux_I 3huz_I 3i8f_K 3i8i_K 3i9c_K 3i9e_K ...
Probab=99.97 E-value=6.2e-31 Score=203.01 Aligned_cols=116 Identities=23% Similarity=0.353 Sum_probs=108.3
Q ss_pred CCCcccccccHHHHHHHHHHHHhcCcchHHHHHHhhhhHHHHHHHHHHHHHHhccCceEEEEcccccccccccCCCCCCc
Q 032091 1 MPKLLAVPNIEKFAHLIREQRRICQPVEEEEVKVIRKSEDNMSREFEKAARRLENARLVLRRFPNIEKLRSRASKDDPIE 80 (147)
Q Consensus 1 ~p~~la~~a~~~~~~~~~~~~~~~~~~~~e~~k~i~k~~~~~~~eae~~a~~L~~~~l~i~~~~g~~~~~~~~~~~~~gk 80 (147)
||+++|++||..|++.++++++..+. +.++.++++++++++|++..+++.+++| ++ +
T Consensus 31 iP~g~A~~AT~~n~k~~e~~~~~~~~-----------~~~~~~~~A~~~~~~L~~~~v~i~~kag-----------~~-k 87 (148)
T 3v2d_I 31 LPRGLAVLATESNLKALEARIRAQAK-----------RLAERKAEAERLKEILENLTLTIPVRAG-----------ET-K 87 (148)
T ss_dssp GGGTSEEECCHHHHHHHHHHHHTHHH-----------HHHHHHHHHHHHHHHSSSCCEEEECCBS-----------SS-S
T ss_pred cccCchhhcCHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHcCCEEEEEEEcC-----------CC-c
Confidence 69999999999999999988776655 7788999999999999999999999987 55 9
Q ss_pred eeeccCHHHHHHHHHhhcCCccccccccCCCccccceeEEEEEEcCCCCCCCCCceEEEEEEEEEc
Q 032091 81 LRSPVTKEELVAEVARQLSISIEPENLHLPSPLSAFGEYEVPMRLPKAIPLPEGKVQWTLNVKVRG 146 (147)
Q Consensus 81 LfGSVT~~dI~~~l~~q~gi~Idk~~I~l~~pIk~lG~~~V~I~L~~~V~~~~~~~~a~l~V~V~~ 146 (147)
||||||++||+++|++++|++|||+.|.||+|||++|+|+|+|+||++| +++++|+|.+
T Consensus 88 LfGSVt~~dIa~al~~~~g~~idk~~I~l~~pIk~~G~~~v~v~Lh~~V-------~a~i~v~V~~ 146 (148)
T 3v2d_I 88 IYGSVTAKDIAEALSRQHGVTIDPKRLALEKPIKELGEYVLTYKPHPEV-------PIQLKVSVVA 146 (148)
T ss_dssp BSSCBCHHHHHHHHTTTTCCCCCTTSSCCSSCBCSCEEEEEECCSBTTB-------CCEEEEEEEC
T ss_pred cccccCHHHHHHHHHHhcCCCcchheEEcCchhhceEEEEEEEEECCCc-------EEEEEEEEEe
Confidence 9999999999999998889999999999999999999999999999999 9999999975
No 5
>3bbo_J Ribosomal protein L9; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=99.94 E-value=3.1e-29 Score=201.50 Aligned_cols=116 Identities=16% Similarity=0.220 Sum_probs=105.2
Q ss_pred CCCcccccccHHHHHHHHHHHHhcCcchHHHHHHhhhhHHHHHHHHHHHHHHhccC-ceEEEEcccccccccccCCCCCC
Q 032091 1 MPKLLAVPNIEKFAHLIREQRRICQPVEEEEVKVIRKSEDNMSREFEKAARRLENA-RLVLRRFPNIEKLRSRASKDDPI 79 (147)
Q Consensus 1 ~p~~la~~a~~~~~~~~~~~~~~~~~~~~e~~k~i~k~~~~~~~eae~~a~~L~~~-~l~i~~~~g~~~~~~~~~~~~~g 79 (147)
||++||++||..|++.++++++..+. +.++.++++++++++|++. .+++.+++|++ |
T Consensus 80 iP~glAv~AT~~nlk~~e~~~~~~e~-----------~~~~~~~~A~~la~~L~~~~~v~i~~kaGe~-----------G 137 (197)
T 3bbo_J 80 LPTGKAQLMTPLLLKELKMEDERIEA-----------EKQRVKEEAQQLAMVFQTVGAFKVKRKGGKG-----------K 137 (197)
T ss_dssp TTTTCCCCCCHHHHHHHHTTTHHHHG-----------GGTTTTHHHHTHHHHSSSCCCCBCCCCBCTT-----------S
T ss_pred ccCCceecCCHHHHHHHHHhHHHHHH-----------HHHHHHHHHHHHHHHhcCCceEEEEEEeCCC-----------C
Confidence 79999999999999999887776665 5567788999999999998 58888888755 5
Q ss_pred ceeeccCHHHHHHHHHhhcCCccccccccCCCccccceeEEEEEEcCCCCCCCCCceEEEEEEEEEc
Q 032091 80 ELRSPVTKEELVAEVARQLSISIEPENLHLPSPLSAFGEYEVPMRLPKAIPLPEGKVQWTLNVKVRG 146 (147)
Q Consensus 80 kLfGSVT~~dI~~~l~~q~gi~Idk~~I~l~~pIk~lG~~~V~I~L~~~V~~~~~~~~a~l~V~V~~ 146 (147)
+||||||++||+++|++++|++|||+.|.||+ ||++|+|+|+|+||++| +++|+|+|.+
T Consensus 138 kLFGSVT~~dIa~al~~~~Gi~Idk~~I~L~~-IK~lG~y~V~VkLh~eV-------~a~i~V~V~~ 196 (197)
T 3bbo_J 138 LIFGSVTAQDLVDIIKSQLQKDIDKRLVSLPE-IRETGEYIAELKLHPDV-------TARVKINVFA 196 (197)
T ss_dssp SBSSCCSSHHHHGGGTSSSSCCCCSTTCCSCC-CSSSSCEEECCCCBTTB-------CCCEEEBCCC
T ss_pred cEecccCHHHHHHHHHHhhCCeeeeeEEEecc-ccceEEEEEEEEECCCc-------EEEEEEEEEe
Confidence 99999999999999998889999999999985 99999999999999999 9999999875
No 6
>2hba_A BL17, 50S ribosomal protein L9; NTL9, K12M, RNA binding protein; 1.25A {Geobacillus stearothermophilus} SCOP: d.100.1.1 PDB: 1cqu_A 2hbb_A 2hvf_A
Probab=94.94 E-value=0.012 Score=37.93 Aligned_cols=21 Identities=14% Similarity=0.145 Sum_probs=19.7
Q ss_pred CCCcccccccHHHHHHHHHHH
Q 032091 1 MPKLLAVPNIEKFAHLIREQR 21 (147)
Q Consensus 1 ~p~~la~~a~~~~~~~~~~~~ 21 (147)
+|+++|++||..|++.+++++
T Consensus 31 iP~g~A~~AT~~n~~~~~~~~ 51 (52)
T 2hba_A 31 FKQGLAIEATPANLKALEAQK 51 (52)
T ss_dssp TTTTSEEECCHHHHHHHHHHH
T ss_pred ccCCceeeCCHHHHHHHHHhh
Confidence 799999999999999999876
No 7
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=66.99 E-value=2.3 Score=27.33 Aligned_cols=24 Identities=17% Similarity=0.237 Sum_probs=18.5
Q ss_pred CceeeccCHHHHHHHHHhhcCCccc
Q 032091 79 IELRSPVTKEELVAEVARQLSISIE 103 (147)
Q Consensus 79 gkLfGSVT~~dI~~~l~~q~gi~Id 103 (147)
|+|.|.||-+||...+... |.+..
T Consensus 32 ~~lvGIvT~~Di~~~~~~~-~~~~~ 55 (70)
T 3ghd_A 32 DEILGVVTERDILDKVVAK-GKNPK 55 (70)
T ss_dssp TEEEEEEEHHHHHHHTTTT-TCCGG
T ss_pred CEEEEEEEHHHHHHHHHhc-CCCcc
Confidence 4999999999999877554 55443
No 8
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}
Probab=55.74 E-value=6.5 Score=26.35 Aligned_cols=20 Identities=10% Similarity=0.180 Sum_probs=17.4
Q ss_pred CCceeeccCHHHHHHHHHhh
Q 032091 78 PIELRSPVTKEELVAEVARQ 97 (147)
Q Consensus 78 ~gkLfGSVT~~dI~~~l~~q 97 (147)
+|++-|.||..||..++.+.
T Consensus 108 ~g~~~Giit~~dll~~l~~~ 127 (128)
T 3gby_A 108 DGRYEGVVSRKRILGFLAER 127 (128)
T ss_dssp TCBEEEEEEHHHHHHHHHTT
T ss_pred CCCEEEEEEHHHHHHHHHhh
Confidence 46999999999999999753
No 9
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=49.88 E-value=6.5 Score=25.78 Aligned_cols=18 Identities=17% Similarity=0.112 Sum_probs=15.6
Q ss_pred CceeeccCHHHHHHHHHh
Q 032091 79 IELRSPVTKEELVAEVAR 96 (147)
Q Consensus 79 gkLfGSVT~~dI~~~l~~ 96 (147)
|++-|.||..||..++.+
T Consensus 103 g~~~Givt~~dl~~~l~~ 120 (122)
T 3kpb_A 103 RRVVGIVTSEDISRLFGG 120 (122)
T ss_dssp CBEEEEEEHHHHHHHHC-
T ss_pred CCEEEEEeHHHHHHHhhc
Confidence 699999999999998854
No 10
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=49.41 E-value=10 Score=27.05 Aligned_cols=21 Identities=10% Similarity=0.131 Sum_probs=18.2
Q ss_pred CCCceeeccCHHHHHHHHHhh
Q 032091 77 DPIELRSPVTKEELVAEVARQ 97 (147)
Q Consensus 77 ~~gkLfGSVT~~dI~~~l~~q 97 (147)
++|++-|.||..||.+++...
T Consensus 123 ~~g~l~GiiT~~Dil~~~~~~ 143 (156)
T 3k6e_A 123 AEGIFQGIITRKSILKAVNAL 143 (156)
T ss_dssp TTSBEEEEEEHHHHHHHHHHH
T ss_pred cCCEEEEEEEHHHHHHHHHHH
Confidence 346999999999999999765
No 11
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=49.03 E-value=9.9 Score=25.34 Aligned_cols=20 Identities=5% Similarity=0.162 Sum_probs=17.6
Q ss_pred CCceeeccCHHHHHHHHHhh
Q 032091 78 PIELRSPVTKEELVAEVARQ 97 (147)
Q Consensus 78 ~gkLfGSVT~~dI~~~l~~q 97 (147)
+|++.|.||..||..++.+.
T Consensus 107 ~g~~~Giit~~dll~~~~~~ 126 (133)
T 2ef7_A 107 KGNLKGIISIRDITRAIDDM 126 (133)
T ss_dssp TSCEEEEEEHHHHHHHHHHH
T ss_pred CCeEEEEEEHHHHHHHHHHH
Confidence 36999999999999998765
No 12
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=48.14 E-value=11 Score=25.79 Aligned_cols=20 Identities=5% Similarity=0.115 Sum_probs=17.8
Q ss_pred CCceeeccCHHHHHHHHHhh
Q 032091 78 PIELRSPVTKEELVAEVARQ 97 (147)
Q Consensus 78 ~gkLfGSVT~~dI~~~l~~q 97 (147)
+|++-|.||..||..++...
T Consensus 125 ~g~~~Giit~~dil~~l~~~ 144 (150)
T 3lqn_A 125 DGYFEGILTRRAILKLLNKK 144 (150)
T ss_dssp TCBEEEEEEHHHHHHHHHHH
T ss_pred CCcEEEEEEHHHHHHHHHHH
Confidence 36999999999999999765
No 13
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1
Probab=47.60 E-value=6.6 Score=26.42 Aligned_cols=19 Identities=16% Similarity=0.162 Sum_probs=17.1
Q ss_pred CceeeccCHHHHHHHHHhh
Q 032091 79 IELRSPVTKEELVAEVARQ 97 (147)
Q Consensus 79 gkLfGSVT~~dI~~~l~~q 97 (147)
|++-|.||..||..++..+
T Consensus 112 g~~~Giit~~dil~~~~~~ 130 (138)
T 2yzi_A 112 GKIVGIFTLSDLLEASRRR 130 (138)
T ss_dssp TEEEEEEEHHHHHHHHHCC
T ss_pred CCEEEEEEHHHHHHHHHHH
Confidence 5999999999999999764
No 14
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A
Probab=44.74 E-value=12 Score=25.08 Aligned_cols=18 Identities=11% Similarity=0.054 Sum_probs=16.4
Q ss_pred CceeeccCHHHHHHHHHh
Q 032091 79 IELRSPVTKEELVAEVAR 96 (147)
Q Consensus 79 gkLfGSVT~~dI~~~l~~ 96 (147)
|++-|.||..||..++..
T Consensus 124 g~~~Giit~~dil~~l~~ 141 (144)
T 2nyc_A 124 GRLVGVLTLSDILKYILL 141 (144)
T ss_dssp SBEEEEEEHHHHHHHHHH
T ss_pred CCEEEEEEHHHHHHHHHh
Confidence 599999999999999865
No 15
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=43.79 E-value=9.7 Score=22.74 Aligned_cols=19 Identities=21% Similarity=0.337 Sum_probs=16.4
Q ss_pred CceeeccCHHHHHHHHHhh
Q 032091 79 IELRSPVTKEELVAEVARQ 97 (147)
Q Consensus 79 gkLfGSVT~~dI~~~l~~q 97 (147)
|++.|.||.+||..++...
T Consensus 32 ~~l~Givt~~dl~~~~~~~ 50 (70)
T 3fio_A 32 DEILGVVTERDILDKVVAK 50 (70)
T ss_dssp TEEEEEEEHHHHHHHTTTT
T ss_pred CEEEEEEEHHHHHHHHHHc
Confidence 4999999999999998653
No 16
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}
Probab=43.10 E-value=14 Score=25.52 Aligned_cols=20 Identities=10% Similarity=0.026 Sum_probs=16.9
Q ss_pred CCceeeccCHHHHHHHHHhh
Q 032091 78 PIELRSPVTKEELVAEVARQ 97 (147)
Q Consensus 78 ~gkLfGSVT~~dI~~~l~~q 97 (147)
+|++-|.||..||.+++...
T Consensus 125 ~g~~vGivt~~dil~~l~~~ 144 (153)
T 3oco_A 125 YGGTSGIITDKDVYEELFGN 144 (153)
T ss_dssp TSCEEEEECHHHHHHHHHC-
T ss_pred CCCEEEEeeHHHHHHHHhcc
Confidence 36999999999999999643
No 17
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}
Probab=42.51 E-value=12 Score=25.65 Aligned_cols=19 Identities=21% Similarity=0.163 Sum_probs=16.6
Q ss_pred CCceeeccCHHHHHHHHHh
Q 032091 78 PIELRSPVTKEELVAEVAR 96 (147)
Q Consensus 78 ~gkLfGSVT~~dI~~~l~~ 96 (147)
+|++-|.||..||.++|..
T Consensus 127 ~g~~~Giit~~dil~~l~~ 145 (148)
T 3lv9_A 127 YGGTSGVVTIEDILEEIVG 145 (148)
T ss_dssp TSSEEEEEEHHHHHHHHHH
T ss_pred CCCEEEEEEHHHHHHHHhC
Confidence 3699999999999999864
No 18
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}
Probab=41.80 E-value=14 Score=25.35 Aligned_cols=19 Identities=16% Similarity=0.232 Sum_probs=17.3
Q ss_pred CceeeccCHHHHHHHHHhh
Q 032091 79 IELRSPVTKEELVAEVARQ 97 (147)
Q Consensus 79 gkLfGSVT~~dI~~~l~~q 97 (147)
|++.|.||..||..++...
T Consensus 122 g~~~Giit~~dil~~~~~~ 140 (157)
T 2emq_A 122 GYFAGIFTRREVLKQLNKQ 140 (157)
T ss_dssp SSEEEEEEHHHHHHHHHHT
T ss_pred CeEEEEEEHHHHHHHHHHH
Confidence 6999999999999999765
No 19
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}
Probab=40.55 E-value=28 Score=23.26 Aligned_cols=19 Identities=16% Similarity=0.223 Sum_probs=16.2
Q ss_pred CCceeeccCHHHHHHHHHh
Q 032091 78 PIELRSPVTKEELVAEVAR 96 (147)
Q Consensus 78 ~gkLfGSVT~~dI~~~l~~ 96 (147)
+|++-|.||..||.++|..
T Consensus 108 ~g~~~Giit~~Dil~~l~g 126 (129)
T 3jtf_A 108 HGGISGLVTMEDVLEQIVG 126 (129)
T ss_dssp -CCEEEEEEHHHHHHHHHH
T ss_pred CCCEEEEEEHHHHHHHHhC
Confidence 3699999999999999864
No 20
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Probab=40.08 E-value=14 Score=25.41 Aligned_cols=20 Identities=10% Similarity=0.142 Sum_probs=18.0
Q ss_pred CCceeeccCHHHHHHHHHhh
Q 032091 78 PIELRSPVTKEELVAEVARQ 97 (147)
Q Consensus 78 ~gkLfGSVT~~dI~~~l~~q 97 (147)
+|++-|.||..||..++...
T Consensus 124 ~g~~~Giit~~dil~~l~~~ 143 (156)
T 3ctu_A 124 EGIFQGIITRKSILKAVNAL 143 (156)
T ss_dssp TSBEEEEEETTHHHHHHHHH
T ss_pred CCeEEEEEEHHHHHHHHHHH
Confidence 36999999999999999875
No 21
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=38.85 E-value=31 Score=25.76 Aligned_cols=22 Identities=27% Similarity=0.119 Sum_probs=18.7
Q ss_pred CCceeeccCHHHHHHHHHhhcC
Q 032091 78 PIELRSPVTKEELVAEVARQLS 99 (147)
Q Consensus 78 ~gkLfGSVT~~dI~~~l~~q~g 99 (147)
+|+|-|.||..||.+.+.....
T Consensus 156 ~g~lvGiIT~~Dil~~i~~e~~ 177 (205)
T 3kxr_A 156 AGELIGRVTLRAATALVREHYE 177 (205)
T ss_dssp TSBEEEEEEHHHHHHHHHHHHC
T ss_pred CCeEEEEEEHHHHHHHHHHHHH
Confidence 3599999999999999987643
No 22
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS domain, lipid synthesis, fatty acid biosynthesis; HET: AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Probab=38.41 E-value=16 Score=25.24 Aligned_cols=17 Identities=6% Similarity=0.171 Sum_probs=15.3
Q ss_pred CceeeccCHHHHHHHHH
Q 032091 79 IELRSPVTKEELVAEVA 95 (147)
Q Consensus 79 gkLfGSVT~~dI~~~l~ 95 (147)
|++-|.||..||..++.
T Consensus 134 g~~vGiit~~dil~~l~ 150 (152)
T 2uv4_A 134 DVVKGIVSLSDILQALV 150 (152)
T ss_dssp SBEEEEEEHHHHHHHHC
T ss_pred CeEEEEEEHHHHHHHHH
Confidence 59999999999999874
No 23
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1
Probab=38.15 E-value=19 Score=24.92 Aligned_cols=20 Identities=10% Similarity=0.200 Sum_probs=17.7
Q ss_pred CCceeeccCHHHHHHHHHhh
Q 032091 78 PIELRSPVTKEELVAEVARQ 97 (147)
Q Consensus 78 ~gkLfGSVT~~dI~~~l~~q 97 (147)
+|++-|.||..||..++...
T Consensus 124 ~g~~vGiit~~dil~~~~~~ 143 (159)
T 1yav_A 124 EQVFEGIFTRRVVLKELNKH 143 (159)
T ss_dssp TCBEEEEEEHHHHHHHHHHH
T ss_pred CCeEEEEEEHHHHHHHHHHH
Confidence 36999999999999999765
No 24
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}
Probab=37.84 E-value=22 Score=23.92 Aligned_cols=19 Identities=21% Similarity=0.324 Sum_probs=16.6
Q ss_pred CCceeeccCHHHHHHHHHh
Q 032091 78 PIELRSPVTKEELVAEVAR 96 (147)
Q Consensus 78 ~gkLfGSVT~~dI~~~l~~ 96 (147)
+|++-|.||..||.+++..
T Consensus 109 ~g~lvGiit~~Dil~~l~g 127 (130)
T 3hf7_A 109 YGDIQGLVTVEDILEEIVG 127 (130)
T ss_dssp TSCEEEEEEHHHHHHHHHC
T ss_pred CCCEEEEeeHHHHHHHHhC
Confidence 3699999999999999853
No 25
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}
Probab=37.79 E-value=38 Score=22.42 Aligned_cols=19 Identities=5% Similarity=0.289 Sum_probs=16.6
Q ss_pred CCceeeccCHHHHHHHHHh
Q 032091 78 PIELRSPVTKEELVAEVAR 96 (147)
Q Consensus 78 ~gkLfGSVT~~dI~~~l~~ 96 (147)
+|++.|.||..||...+.+
T Consensus 118 ~g~~~Giit~~dll~~~~~ 136 (138)
T 2p9m_A 118 NNKLVGIISDGDIIRTISK 136 (138)
T ss_dssp TSBEEEEEEHHHHHHHHHH
T ss_pred CCeEEEEEEHHHHHHHHHh
Confidence 3699999999999998865
No 26
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1
Probab=37.48 E-value=17 Score=25.15 Aligned_cols=19 Identities=11% Similarity=0.109 Sum_probs=16.8
Q ss_pred CceeeccCHHHHHHHHHhh
Q 032091 79 IELRSPVTKEELVAEVARQ 97 (147)
Q Consensus 79 gkLfGSVT~~dI~~~l~~q 97 (147)
|++.|.||..||..++.+.
T Consensus 136 g~~vGiit~~dll~~l~~~ 154 (157)
T 1o50_A 136 GEIVGDLNSLEILLALWKG 154 (157)
T ss_dssp SCEEEEEEHHHHHHHHHHS
T ss_pred CEEEEEEEHHHHHHHHHHh
Confidence 5999999999999998653
No 27
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}
Probab=35.98 E-value=25 Score=23.46 Aligned_cols=18 Identities=17% Similarity=0.100 Sum_probs=15.9
Q ss_pred CCceeeccCHHHHHHHHH
Q 032091 78 PIELRSPVTKEELVAEVA 95 (147)
Q Consensus 78 ~gkLfGSVT~~dI~~~l~ 95 (147)
+|++-|.||..||..+|.
T Consensus 111 ~g~~vGivt~~dil~~l~ 128 (130)
T 3i8n_A 111 YGTVLGLVTLEDIFEHLV 128 (130)
T ss_dssp TSCEEEEEEHHHHHHHHH
T ss_pred CCCEEEEEEHHHHHHHHc
Confidence 369999999999999874
No 28
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}
Probab=34.56 E-value=25 Score=23.34 Aligned_cols=18 Identities=17% Similarity=0.108 Sum_probs=15.1
Q ss_pred CCceeeccCHHHHHHHHH
Q 032091 78 PIELRSPVTKEELVAEVA 95 (147)
Q Consensus 78 ~gkLfGSVT~~dI~~~l~ 95 (147)
+|++-|.||..||.++|.
T Consensus 108 ~g~~~Giit~~dll~~l~ 125 (127)
T 3nqr_A 108 FGGVSGLVTIEDILELIV 125 (127)
T ss_dssp TSCEEEEEEHHHHHHHC-
T ss_pred CCCEEEEEEHHHHHHHHh
Confidence 359999999999998863
No 29
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=33.59 E-value=18 Score=21.56 Aligned_cols=33 Identities=12% Similarity=0.178 Sum_probs=24.3
Q ss_pred eccCHHHHHHHHHhhcCCccccccccCCCcccccee
Q 032091 83 SPVTKEELVAEVARQLSISIEPENLHLPSPLSAFGE 118 (147)
Q Consensus 83 GSVT~~dI~~~l~~q~gi~Idk~~I~l~~pIk~lG~ 118 (147)
|.+|..||++.+.+. |..|+...|.= .++.+|.
T Consensus 18 ~~~t~~el~~~l~~~-~~~vs~~Tv~R--~L~~lg~ 50 (64)
T 2p5k_A 18 EIETQDELVDMLKQD-GYKVTQATVSR--DIKELHL 50 (64)
T ss_dssp CCCSHHHHHHHHHHT-TCCCCHHHHHH--HHHHHTC
T ss_pred CCCCHHHHHHHHHHh-CCCcCHHHHHH--HHHHcCC
Confidence 358999999999875 88888877642 3556664
No 30
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=33.31 E-value=39 Score=22.50 Aligned_cols=20 Identities=15% Similarity=0.124 Sum_probs=16.9
Q ss_pred CCceeeccCHHHHHHHHHhh
Q 032091 78 PIELRSPVTKEELVAEVARQ 97 (147)
Q Consensus 78 ~gkLfGSVT~~dI~~~l~~q 97 (147)
+|++-|.||..||..++...
T Consensus 125 ~g~~~Giit~~dil~~~~~~ 144 (152)
T 4gqw_A 125 DGKLVGIITRGNVVRAALQI 144 (152)
T ss_dssp TSBEEEEEEHHHHHHHHHC-
T ss_pred CCcEEEEEEHHHHHHHHHhc
Confidence 36999999999999998753
No 31
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=33.10 E-value=20 Score=25.46 Aligned_cols=19 Identities=16% Similarity=0.240 Sum_probs=16.8
Q ss_pred CCceeeccCHHHHHHHHHh
Q 032091 78 PIELRSPVTKEELVAEVAR 96 (147)
Q Consensus 78 ~gkLfGSVT~~dI~~~l~~ 96 (147)
.|++-|.||..||.+++..
T Consensus 146 ~g~lvGiit~~Dil~~l~~ 164 (172)
T 3lhh_A 146 YGDLKGLVTLQDMMDALTG 164 (172)
T ss_dssp TSCEEEEEEHHHHHHHHHT
T ss_pred CCCEEEEeeHHHHHHHHhC
Confidence 3699999999999999864
No 32
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=31.42 E-value=51 Score=22.78 Aligned_cols=20 Identities=15% Similarity=0.096 Sum_probs=17.4
Q ss_pred CCceeeccCHHHHHHHHHhh
Q 032091 78 PIELRSPVTKEELVAEVARQ 97 (147)
Q Consensus 78 ~gkLfGSVT~~dI~~~l~~q 97 (147)
+|++-|.||..||..++...
T Consensus 138 ~g~~vGiit~~dil~~~~~~ 157 (180)
T 3sl7_A 138 DGKLIGILTRGNVVRAALQI 157 (180)
T ss_dssp TCBEEEEEEHHHHHHHHHHH
T ss_pred CCeEEEEEEHHHHHHHHHHH
Confidence 36999999999999998753
No 33
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}
Probab=30.84 E-value=58 Score=22.08 Aligned_cols=21 Identities=10% Similarity=-0.056 Sum_probs=18.4
Q ss_pred CceeeccCHHHHHHHHHhhcC
Q 032091 79 IELRSPVTKEELVAEVARQLS 99 (147)
Q Consensus 79 gkLfGSVT~~dI~~~l~~q~g 99 (147)
|++-|.||..||..++....+
T Consensus 130 g~l~Giit~~dil~~~~~~~~ 150 (164)
T 2pfi_A 130 GRAVGCVSWVEMKKAISNLTN 150 (164)
T ss_dssp TEEEEEEEHHHHHHHHHHHHS
T ss_pred CEEEEEEEHHHHHHHHHhhhC
Confidence 499999999999999987654
No 34
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}
Probab=30.76 E-value=27 Score=24.42 Aligned_cols=19 Identities=32% Similarity=0.219 Sum_probs=16.8
Q ss_pred CceeeccCHHHHHHHHHhh
Q 032091 79 IELRSPVTKEELVAEVARQ 97 (147)
Q Consensus 79 gkLfGSVT~~dI~~~l~~q 97 (147)
|++.|.||..||..++...
T Consensus 68 ~~~~Givt~~dl~~~~~~~ 86 (165)
T 3fhm_A 68 GVVLGIFTERDLVKAVAGQ 86 (165)
T ss_dssp SCEEEEEEHHHHHHHHHHH
T ss_pred CeEEEEEEHHHHHHHHHhc
Confidence 5999999999999988753
No 35
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}
Probab=29.89 E-value=48 Score=23.79 Aligned_cols=19 Identities=16% Similarity=0.085 Sum_probs=16.9
Q ss_pred CCceeeccCHHHHHHHHHh
Q 032091 78 PIELRSPVTKEELVAEVAR 96 (147)
Q Consensus 78 ~gkLfGSVT~~dI~~~l~~ 96 (147)
+|++-|.||..||..++..
T Consensus 139 ~g~lvGiIT~~Dil~~l~~ 157 (173)
T 3ocm_A 139 FGAIEGLVTPIDVFEAIAG 157 (173)
T ss_dssp TCCEEEEECHHHHHHHHHC
T ss_pred CCCEEEEEeHHHHHHHHhC
Confidence 3699999999999999964
No 36
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1
Probab=28.80 E-value=16 Score=23.82 Aligned_cols=18 Identities=6% Similarity=0.124 Sum_probs=15.5
Q ss_pred CceeeccCHHHHHHHHHh
Q 032091 79 IELRSPVTKEELVAEVAR 96 (147)
Q Consensus 79 gkLfGSVT~~dI~~~l~~ 96 (147)
|++.|.||..||..++..
T Consensus 105 ~~~~Gvit~~dl~~~l~~ 122 (125)
T 1pbj_A 105 DEIIGVISATDILRAKMA 122 (125)
T ss_dssp TEEEEEEEHHHHHHHHC-
T ss_pred CEEEEEEEHHHHHHHHHh
Confidence 499999999999998854
No 37
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=28.12 E-value=18 Score=24.32 Aligned_cols=23 Identities=9% Similarity=0.341 Sum_probs=20.3
Q ss_pred ccCHHHHHHHHHhhcCCccccccc
Q 032091 84 PVTKEELVAEVARQLSISIEPENL 107 (147)
Q Consensus 84 SVT~~dI~~~l~~q~gi~Idk~~I 107 (147)
+.|-+.|++.|+++ ||.|-||.|
T Consensus 37 PlSD~~I~~~L~~~-Gi~IaRRTV 59 (76)
T 2ahq_A 37 PYSDQEIANILKEK-GFKVARRTV 59 (76)
T ss_dssp CCCHHHHHHHHTTT-SSCCCHHHH
T ss_pred CCCHHHHHHHHHHc-CCCccHHHH
Confidence 47899999999887 999999876
No 38
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=28.00 E-value=30 Score=23.63 Aligned_cols=19 Identities=11% Similarity=0.090 Sum_probs=16.3
Q ss_pred CCceeeccCHHHHHHHHHh
Q 032091 78 PIELRSPVTKEELVAEVAR 96 (147)
Q Consensus 78 ~gkLfGSVT~~dI~~~l~~ 96 (147)
+|++.|.||..||...+..
T Consensus 70 ~~~~~Givt~~dl~~~~~~ 88 (149)
T 3k2v_A 70 DMNIIGIFTDGDLRRVFDT 88 (149)
T ss_dssp TCBEEEEEEHHHHHHHHCS
T ss_pred CCcEEEEecHHHHHHHHhc
Confidence 3699999999999998854
No 39
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=27.41 E-value=31 Score=23.98 Aligned_cols=19 Identities=16% Similarity=0.080 Sum_probs=16.7
Q ss_pred CceeeccCHHHHHHHHHhh
Q 032091 79 IELRSPVTKEELVAEVARQ 97 (147)
Q Consensus 79 gkLfGSVT~~dI~~~l~~q 97 (147)
|++-|.||..||..++...
T Consensus 118 g~lvGiit~~dil~~~~~~ 136 (160)
T 2o16_A 118 DVLVGIITDSDFVTIAINL 136 (160)
T ss_dssp TEEEEEECHHHHHHHHHHH
T ss_pred CEEEEEEEHHHHHHHHHHH
Confidence 5999999999999987754
No 40
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}
Probab=26.71 E-value=20 Score=24.31 Aligned_cols=19 Identities=16% Similarity=0.151 Sum_probs=15.3
Q ss_pred CCceeeccCHHHHHHHHHh
Q 032091 78 PIELRSPVTKEELVAEVAR 96 (147)
Q Consensus 78 ~gkLfGSVT~~dI~~~l~~ 96 (147)
+|++-|.||..||.++|..
T Consensus 109 ~g~lvGiit~~Dil~~l~~ 127 (136)
T 3lfr_A 109 YGGVAGLVTIEDVLEQIVG 127 (136)
T ss_dssp TSCEEEEEEHHHHHTTC--
T ss_pred CCCEEEEEEHHHHHHHHhC
Confidence 3599999999999998754
No 41
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Probab=25.67 E-value=18 Score=24.46 Aligned_cols=17 Identities=29% Similarity=0.192 Sum_probs=14.8
Q ss_pred CceeeccCHHHHHHHHH
Q 032091 79 IELRSPVTKEELVAEVA 95 (147)
Q Consensus 79 gkLfGSVT~~dI~~~l~ 95 (147)
|++.|.||..||..++.
T Consensus 111 g~~~Giit~~dll~~~~ 127 (141)
T 2rih_A 111 GELVGVLSIRDLCFERA 127 (141)
T ss_dssp SCEEEEEEHHHHHSCHH
T ss_pred CcEEEEEEHHHHHHHHH
Confidence 59999999999987664
No 42
>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*
Probab=25.47 E-value=39 Score=23.58 Aligned_cols=20 Identities=15% Similarity=0.302 Sum_probs=17.1
Q ss_pred CCCceeeccCHHHHHHHHHh
Q 032091 77 DPIELRSPVTKEELVAEVAR 96 (147)
Q Consensus 77 ~~gkLfGSVT~~dI~~~l~~ 96 (147)
++|++.|.||..|+...+..
T Consensus 58 ~~~~lvGiit~~dl~~~~~~ 77 (185)
T 2j9l_A 58 ESQRLVGFVLRRDLIISIEN 77 (185)
T ss_dssp TTCBEEEEEEHHHHHHHHHH
T ss_pred CCCeEEEEEEHHHHHHHHHh
Confidence 34699999999999998865
No 43
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1
Probab=25.35 E-value=38 Score=26.59 Aligned_cols=20 Identities=15% Similarity=0.219 Sum_probs=17.4
Q ss_pred CCceeeccCHHHHHHHHHhh
Q 032091 78 PIELRSPVTKEELVAEVARQ 97 (147)
Q Consensus 78 ~gkLfGSVT~~dI~~~l~~q 97 (147)
+|++-|.||..||.+.+...
T Consensus 241 ~g~lvGiIT~~Dil~~i~~e 260 (286)
T 2oux_A 241 DDHLLGIVTVDDIIDVIDDE 260 (286)
T ss_dssp TCBEEEEEEHHHHHHHHHHH
T ss_pred CCeEEEEEEHHHHHHHHHHH
Confidence 36999999999999998764
No 44
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Probab=25.34 E-value=31 Score=22.93 Aligned_cols=19 Identities=16% Similarity=0.156 Sum_probs=16.2
Q ss_pred CceeeccCHHHHHHHHHhh
Q 032091 79 IELRSPVTKEELVAEVARQ 97 (147)
Q Consensus 79 gkLfGSVT~~dI~~~l~~q 97 (147)
|++-|.||..||..++...
T Consensus 114 g~~~Giit~~dll~~~~~~ 132 (135)
T 2rc3_A 114 GKVIGLLSIGDLVKDAISQ 132 (135)
T ss_dssp TEEEEEEEHHHHHHHHHC-
T ss_pred CEEEEEEEHHHHHHHHHhc
Confidence 4999999999999998653
No 45
>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1
Probab=24.95 E-value=38 Score=25.75 Aligned_cols=20 Identities=15% Similarity=0.273 Sum_probs=17.8
Q ss_pred CCceeeccCHHHHHHHHHhh
Q 032091 78 PIELRSPVTKEELVAEVARQ 97 (147)
Q Consensus 78 ~gkLfGSVT~~dI~~~l~~q 97 (147)
+|++-|.||..||..++..+
T Consensus 267 ~g~~~Giit~~Dil~~l~~~ 286 (296)
T 3ddj_A 267 DNTIRGIITERDLLIALHHI 286 (296)
T ss_dssp TSCEEEEEEHHHHHHHHHHH
T ss_pred CCeEEEEEcHHHHHHHHHHH
Confidence 36999999999999999765
No 46
>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}
Probab=24.86 E-value=42 Score=22.91 Aligned_cols=19 Identities=21% Similarity=0.193 Sum_probs=17.2
Q ss_pred CceeeccCHHHHHHHHHhh
Q 032091 79 IELRSPVTKEELVAEVARQ 97 (147)
Q Consensus 79 gkLfGSVT~~dI~~~l~~q 97 (147)
|++-|.||..||..++...
T Consensus 118 g~~~Giit~~dil~~l~~~ 136 (157)
T 4fry_A 118 GKLIGLISIGDLVKSVIAD 136 (157)
T ss_dssp TEEEEEEEHHHHHHHHHTT
T ss_pred CEEEEEEEHHHHHHHHHHH
Confidence 4999999999999999764
No 47
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*
Probab=24.61 E-value=26 Score=24.31 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=16.7
Q ss_pred ceeeccCHHHHHHHHHhh
Q 032091 80 ELRSPVTKEELVAEVARQ 97 (147)
Q Consensus 80 kLfGSVT~~dI~~~l~~q 97 (147)
++-|.||..||..++.+.
T Consensus 128 ~~vGiit~~dil~~l~~~ 145 (159)
T 3fv6_A 128 EVIGRVTKTNMTKILVSL 145 (159)
T ss_dssp EEEEEEEHHHHHHHHHHH
T ss_pred eEEEEEEHHHHHHHHHHH
Confidence 899999999999999875
No 48
>2d7p_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10 PDB: 2eeb_A
Probab=24.48 E-value=94 Score=21.45 Aligned_cols=27 Identities=7% Similarity=0.159 Sum_probs=21.3
Q ss_pred cccceeEEEEEEcCCCCCCCCCceEEEE
Q 032091 113 LSAFGEYEVPMRLPKAIPLPEGKVQWTL 140 (147)
Q Consensus 113 Ik~lG~~~V~I~L~~~V~~~~~~~~a~l 140 (147)
-+.-|.|.|.|++.- .++|+.|-.+++
T Consensus 73 P~~~G~h~v~V~~~g-~~I~GSPF~v~V 99 (112)
T 2d7p_A 73 PHENGVHSIDVKFNG-AHIPGSPFKIRV 99 (112)
T ss_dssp CSSCEEEEEEEEESS-CBCTTCSEEEEE
T ss_pred cCCCEeEEEEEEECC-eEcCCCCEEEEE
Confidence 457899999999875 578999876554
No 49
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=23.89 E-value=36 Score=22.34 Aligned_cols=25 Identities=12% Similarity=0.208 Sum_probs=20.6
Q ss_pred eeccCHHHHHHHHHhhc-CCcccccc
Q 032091 82 RSPVTKEELVAEVARQL-SISIEPEN 106 (147)
Q Consensus 82 fGSVT~~dI~~~l~~q~-gi~Idk~~ 106 (147)
+-+||.+.|-..|...+ |+++..++
T Consensus 30 L~tvT~K~VR~~Le~~~pg~dLs~kK 55 (70)
T 1q1v_A 30 LEEVTMKQICKKVYENYPTYDLTERK 55 (70)
T ss_dssp GGGCCHHHHHHHHHHHCSSSCCSHHH
T ss_pred HHHHhHHHHHHHHHHHccCCCChHHH
Confidence 34599999999999999 88877554
No 50
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Probab=22.89 E-value=41 Score=26.09 Aligned_cols=21 Identities=5% Similarity=0.041 Sum_probs=18.1
Q ss_pred CceeeccCHHHHHHHHHhhcC
Q 032091 79 IELRSPVTKEELVAEVARQLS 99 (147)
Q Consensus 79 gkLfGSVT~~dI~~~l~~q~g 99 (147)
|++-|.||..||..++....|
T Consensus 306 g~l~Giit~~Dil~~~~~~~~ 326 (330)
T 2v8q_E 306 DVVKGIVSLSDILQALVLTGG 326 (330)
T ss_dssp SBEEEEEEHHHHHHHHHSSCC
T ss_pred CcEEEEEeHHHHHHHHHhhcc
Confidence 599999999999999976543
No 51
>2amw_A Hypothetical protein NE2163; all helical protein, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=22.49 E-value=34 Score=21.67 Aligned_cols=34 Identities=6% Similarity=0.334 Sum_probs=25.5
Q ss_pred eccCHHHHHHHHHhhcCCccccccccCCCccccce
Q 032091 83 SPVTKEELVAEVARQLSISIEPENLHLPSPLSAFG 117 (147)
Q Consensus 83 GSVT~~dI~~~l~~q~gi~Idk~~I~l~~pIk~lG 117 (147)
=|+..-+++-.|.+.+|++|+...+.. ..++++|
T Consensus 38 DSl~~~elv~~lE~~fgi~i~~~~l~~-~~~~Tv~ 71 (83)
T 2amw_A 38 DSMAVVNVITALEEYFDFSVDDDEISA-QTFETLG 71 (83)
T ss_dssp THHHHHHHHHHHHHHTTCCCCTTTCCG-GGSSSHH
T ss_pred CHHHHHHHHHHHHHHhCCeeCHHhhhH-HhcCCHH
Confidence 478888999999999999998877532 2355554
No 52
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=22.02 E-value=1.1e+02 Score=22.47 Aligned_cols=57 Identities=12% Similarity=0.148 Sum_probs=42.5
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhccCceEEEEcccccccccccCCCCCCceeeccCHHHHHHHHH
Q 032091 32 VKVIRKSEDNMSREFEKAARRLENARLVLRRFPNIEKLRSRASKDDPIELRSPVTKEELVAEVA 95 (147)
Q Consensus 32 ~k~i~k~~~~~~~eae~~a~~L~~~~l~i~~~~g~~~~~~~~~~~~~gkLfGSVT~~dI~~~l~ 95 (147)
.++|..+..--..-++++..+|..+.++-..+-..+|+.+.....+ ||-.||+.++.
T Consensus 47 ~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p~e-------ItL~dVi~avE 103 (159)
T 3lwf_A 47 LRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRGAHGGYVLNGDPEK-------ITAGDIIRTLE 103 (159)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECSTTCEEEECSCTTT-------CBHHHHHHHHS
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecCCCCceEecCCHHH-------CCHHHHHHHHc
Confidence 3455556666667778888899998887776644567877776654 99999999985
No 53
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1
Probab=21.51 E-value=52 Score=24.34 Aligned_cols=20 Identities=15% Similarity=0.421 Sum_probs=17.3
Q ss_pred CceeeccCHHHHHHHHHhhc
Q 032091 79 IELRSPVTKEELVAEVARQL 98 (147)
Q Consensus 79 gkLfGSVT~~dI~~~l~~q~ 98 (147)
|++.|.||..||...+....
T Consensus 113 g~lvGiit~~Dil~~~~~~~ 132 (213)
T 1vr9_A 113 MRLKGAVSLHDFLEALIEAL 132 (213)
T ss_dssp CBEEEEEEHHHHHHHHHHSC
T ss_pred CEEEEEEEHHHHHHHHHHHh
Confidence 59999999999999987543
No 54
>2ee9_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.94 E-value=1.3e+02 Score=20.54 Aligned_cols=27 Identities=19% Similarity=0.317 Sum_probs=21.6
Q ss_pred cccceeEEEEEEcCCCCCCCCCceEEEE
Q 032091 113 LSAFGEYEVPMRLPKAIPLPEGKVQWTL 140 (147)
Q Consensus 113 Ik~lG~~~V~I~L~~~V~~~~~~~~a~l 140 (147)
-+..|.|.|.|++.- .++|+.|-.+++
T Consensus 62 P~e~G~h~v~V~~~G-~~I~GSPF~v~V 88 (95)
T 2ee9_A 62 PTEVGLHEMHIKYMG-SHIPESPLQFYV 88 (95)
T ss_dssp CCSSEEEEEEEEESS-CBCTTCSEEEEE
T ss_pred ecCCEeEEEEEEECC-EECCCCCeEEEE
Confidence 467899999999875 578998876654
No 55
>1dv5_A APO-DCP, APO-D-alanyl carrier protein; 3-helix bundle, transport protein; NMR {Lactobacillus casei} SCOP: a.28.1.3 PDB: 1hqb_A
Probab=20.88 E-value=39 Score=21.49 Aligned_cols=35 Identities=9% Similarity=0.118 Sum_probs=27.2
Q ss_pred eeccCHHHHHHHHHhhcCCccccccccCCCccccce
Q 032091 82 RSPVTKEELVAEVARQLSISIEPENLHLPSPLSAFG 117 (147)
Q Consensus 82 fGSVT~~dI~~~l~~q~gi~Idk~~I~l~~pIk~lG 117 (147)
.=|+..-+++-+|.+.+|++|+...+.. +.++++|
T Consensus 36 lDSl~~velv~~lE~~fgi~i~~~~~~~-~~~~Tv~ 70 (80)
T 1dv5_A 36 LDSMGTVQLLLELQSQFGVDAPVSEFDR-KEWDTPN 70 (80)
T ss_dssp CCSHHHHHHHHHHTTTSCCCCCCSSCCT-TTTTSHH
T ss_pred cChHHHHHHHHHHHHHhCCcCCHHHcCH-HhcCCHH
Confidence 5688999999999999999998776542 3466655
No 56
>2d7n_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=20.87 E-value=1.3e+02 Score=20.22 Aligned_cols=27 Identities=11% Similarity=0.201 Sum_probs=21.7
Q ss_pred cccceeEEEEEEcCCCCCCCCCceEEEE
Q 032091 113 LSAFGEYEVPMRLPKAIPLPEGKVQWTL 140 (147)
Q Consensus 113 Ik~lG~~~V~I~L~~~V~~~~~~~~a~l 140 (147)
-+.-|.|.|.|++.- .++|+.|-.+++
T Consensus 54 P~e~G~h~v~V~~~g-~~I~GSPF~v~V 80 (93)
T 2d7n_A 54 PTEKGLHQMGIKYDG-NHIPGSPLQFYV 80 (93)
T ss_dssp CSSCEEEEEEEEESS-SCCTTCSEEEEE
T ss_pred ccCCEEEEEEEEECC-EeCCCCCeEEEE
Confidence 457899999999875 678999877665
No 57
>3a1y_A 50S ribosomal protein P1 (L12P); stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=20.26 E-value=67 Score=20.20 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=19.5
Q ss_pred ccCHHHHHHHHHhhcCCccccccc
Q 032091 84 PVTKEELVAEVARQLSISIEPENL 107 (147)
Q Consensus 84 SVT~~dI~~~l~~q~gi~Idk~~I 107 (147)
++|..+|..-|+.- |+++|.-.+
T Consensus 16 ~~t~~~I~~il~aa-Gveve~~~~ 38 (58)
T 3a1y_A 16 EINEENLKAVLQAA-GVEPEEARI 38 (58)
T ss_dssp CCCHHHHHHHHHHT-TCCCCHHHH
T ss_pred CCCHHHHHHHHHHc-CCCccHHHH
Confidence 79999999999874 999987554
No 58
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=20.21 E-value=14 Score=26.08 Aligned_cols=18 Identities=17% Similarity=-0.001 Sum_probs=15.6
Q ss_pred CceeeccCHHHHHHHHHh
Q 032091 79 IELRSPVTKEELVAEVAR 96 (147)
Q Consensus 79 gkLfGSVT~~dI~~~l~~ 96 (147)
|++-|.||..||..+|..
T Consensus 145 g~lvGivt~~Dil~~l~~ 162 (170)
T 4esy_A 145 GVPVGIVTRRDLLKLLLL 162 (170)
T ss_dssp TEEEEEEEHHHHTTTSCC
T ss_pred CEEEEEEEHHHHHHHHHh
Confidence 599999999999988754
Done!