BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032092
(147 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q38942|RAE1L_ARATH Rae1-like protein At1g80670 OS=Arabidopsis thaliana GN=At1g80670
PE=2 SV=2
Length = 349
Score = 194 bits (494), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 99/147 (67%), Positives = 103/147 (70%), Gaps = 30/147 (20%)
Query: 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLD 60
MVVGTADRNL+VFNLQNPQTEFKRI SPLKYQ RCV AFPDQQGF VGSIEGRVGVHHLD
Sbjct: 168 MVVGTADRNLIVFNLQNPQTEFKRIQSPLKYQTRCVTAFPDQQGFLVGSIEGRVGVHHLD 227
Query: 61 DSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQI 120
DSQQSKNFTFKCHRDG++ SV S F +
Sbjct: 228 DSQQSKNFTFKCHRDGNDIYSVNSLN------------------------------FHPV 257
Query: 121 HHTFATAGSDGAFNFWDKDSKQRLKVF 147
H TFATAGSDGAFNFWDKDSKQRLK
Sbjct: 258 HGTFATAGSDGAFNFWDKDSKQRLKAM 284
>sp|Q5FVA9|RAE1L_XENTR mRNA export factor OS=Xenopus tropicalis GN=rae1 PE=2 SV=1
Length = 368
Score = 116 bits (290), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 91/151 (60%), Gaps = 30/151 (19%)
Query: 2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQ----GFWVGSIEGRVGVH 57
VV TA+R L+V+ L+N +EF+RI+SPLK+Q RCVA F D+Q GF +GSIEGRV +H
Sbjct: 184 VVATAERGLIVYQLENQPSEFRRIDSPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIH 243
Query: 58 HLDDSQQSK-NFTFKCHR-DGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIV 115
+++ +K NFTFKCHR +G+ T AP+ Y V +
Sbjct: 244 YINPPNPAKDNFTFKCHRSNGTNTT------------APQ--DIYAVNG----------I 279
Query: 116 LFVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146
F +H T AT GSDG F+FWDKD++ +LK
Sbjct: 280 AFHPVHGTLATVGSDGRFSFWDKDARTKLKT 310
>sp|Q3SWS8|RAE1L_RAT mRNA export factor OS=Rattus norvegicus GN=Rae1 PE=2 SV=1
Length = 368
Score = 116 bits (290), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 66/150 (44%), Positives = 87/150 (58%), Gaps = 28/150 (18%)
Query: 2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQ----GFWVGSIEGRVGVH 57
VV TA+R L+V+ L+N +EF+RI SPLK+Q RCVA F D+Q GF +GSIEGRV +H
Sbjct: 184 VVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIH 243
Query: 58 HLDDSQQSK-NFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVL 116
+++ +K NFTFKCHR S AP+ Y V +
Sbjct: 244 YINPPNPAKDNFTFKCHRSNGTNTS-----------APQ--DIYAVNG----------IA 280
Query: 117 FVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146
F +H T AT GSDG F+FWDKD++ +LK
Sbjct: 281 FHPVHGTLATVGSDGRFSFWDKDARTKLKT 310
>sp|A5GFN6|RAEL1_PIG mRNA export factor OS=Sus scrofa GN=RAE1 PE=3 SV=1
Length = 368
Score = 116 bits (290), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 66/150 (44%), Positives = 87/150 (58%), Gaps = 28/150 (18%)
Query: 2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQ----GFWVGSIEGRVGVH 57
VV TA+R L+V+ L+N +EF+RI SPLK+Q RCVA F D+Q GF +GSIEGRV +H
Sbjct: 184 VVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIH 243
Query: 58 HLDDSQQSK-NFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVL 116
+++ +K NFTFKCHR S AP+ Y V +
Sbjct: 244 YINPPNPAKDNFTFKCHRSNGTNTS-----------APQ--DIYAVNG----------IA 280
Query: 117 FVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146
F +H T AT GSDG F+FWDKD++ +LK
Sbjct: 281 FHPVHGTLATVGSDGRFSFWDKDARTKLKT 310
>sp|Q5RF99|RAEL1_PONAB mRNA export factor OS=Pongo abelii GN=RAE1 PE=2 SV=1
Length = 368
Score = 115 bits (289), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 66/150 (44%), Positives = 87/150 (58%), Gaps = 28/150 (18%)
Query: 2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQ----GFWVGSIEGRVGVH 57
VV TA+R L+V+ L+N +EF+RI SPLK+Q RCVA F D+Q GF +GSIEGRV +H
Sbjct: 184 VVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIH 243
Query: 58 HLDDSQQSK-NFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVL 116
+++ +K NFTFKCHR S AP+ Y V +
Sbjct: 244 YINPPNPAKDNFTFKCHRSNGTNTS-----------APQ--DIYAVNG----------IA 280
Query: 117 FVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146
F +H T AT GSDG F+FWDKD++ +LK
Sbjct: 281 FHPVHGTLATVGSDGRFSFWDKDARTKLKT 310
>sp|P78406|RAE1L_HUMAN mRNA export factor OS=Homo sapiens GN=RAE1 PE=1 SV=1
Length = 368
Score = 115 bits (289), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 66/150 (44%), Positives = 87/150 (58%), Gaps = 28/150 (18%)
Query: 2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQ----GFWVGSIEGRVGVH 57
VV TA+R L+V+ L+N +EF+RI SPLK+Q RCVA F D+Q GF +GSIEGRV +H
Sbjct: 184 VVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIH 243
Query: 58 HLDDSQQSK-NFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVL 116
+++ +K NFTFKCHR S AP+ Y V +
Sbjct: 244 YINPPNPAKDNFTFKCHRSNGTNTS-----------APQ--DIYAVNG----------IA 280
Query: 117 FVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146
F +H T AT GSDG F+FWDKD++ +LK
Sbjct: 281 FHPVHGTLATVGSDGRFSFWDKDARTKLKT 310
>sp|Q7ZWF0|RAE1L_DANRE mRNA export factor OS=Danio rerio GN=rae1 PE=2 SV=2
Length = 368
Score = 115 bits (289), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 89/151 (58%), Gaps = 30/151 (19%)
Query: 2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQ----GFWVGSIEGRVGVH 57
VV TA+R L+V+ L+N +EF+RI SPLK+Q RCVA F D+Q GF +GSIEGRV +H
Sbjct: 184 VVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQSKPTGFALGSIEGRVAIH 243
Query: 58 HLDDSQQSK-NFTFKCHR-DGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIV 115
+++ +K NFTFKCHR +G+ T + ++ A +
Sbjct: 244 YINPPNPAKDNFTFKCHRSNGTNTATPQDIYAVNA------------------------I 279
Query: 116 LFVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146
F +H T AT GSDG F+FWDKD++ +LK
Sbjct: 280 SFHPVHGTLATVGSDGRFSFWDKDARTKLKT 310
>sp|Q8C570|RAE1L_MOUSE mRNA export factor OS=Mus musculus GN=Rae1 PE=1 SV=1
Length = 368
Score = 115 bits (289), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 66/150 (44%), Positives = 87/150 (58%), Gaps = 28/150 (18%)
Query: 2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQ----GFWVGSIEGRVGVH 57
VV TA+R L+V+ L+N +EF+RI SPLK+Q RCVA F D+Q GF +GSIEGRV +H
Sbjct: 184 VVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIH 243
Query: 58 HLDDSQQSK-NFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVL 116
+++ +K NFTFKCHR S AP+ Y V +
Sbjct: 244 YINPPNPAKDNFTFKCHRSNGTNTS-----------APQ--DIYAVNG----------IA 280
Query: 117 FVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146
F +H T AT GSDG F+FWDKD++ +LK
Sbjct: 281 FHPVHGTLATVGSDGRFSFWDKDARTKLKT 310
>sp|Q5E9A4|RAE1L_BOVIN mRNA export factor OS=Bos taurus GN=RAE1 PE=2 SV=1
Length = 368
Score = 115 bits (289), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 66/150 (44%), Positives = 87/150 (58%), Gaps = 28/150 (18%)
Query: 2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQ----GFWVGSIEGRVGVH 57
VV TA+R L+V+ L+N +EF+RI SPLK+Q RCVA F D+Q GF +GSIEGRV +H
Sbjct: 184 VVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIH 243
Query: 58 HLDDSQQSK-NFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVL 116
+++ +K NFTFKCHR S AP+ Y V +
Sbjct: 244 YINPPNPAKDNFTFKCHRSNGTNTS-----------APQ--DIYAVNG----------IA 280
Query: 117 FVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146
F +H T AT GSDG F+FWDKD++ +LK
Sbjct: 281 FHPVHGTLATVGSDGRFSFWDKDARTKLKT 310
>sp|Q4R6D2|RAE1L_MACFA mRNA export factor OS=Macaca fascicularis GN=RAE1 PE=2 SV=1
Length = 368
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/150 (44%), Positives = 86/150 (57%), Gaps = 28/150 (18%)
Query: 2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQ----GFWVGSIEGRVGVH 57
VV TA R L+V+ L+N +EF+RI SPLK+Q RCVA F D+Q GF +GSIEGRV +H
Sbjct: 184 VVATAGRGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIH 243
Query: 58 HLDDSQQSK-NFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVL 116
+++ +K NFTFKCHR S AP+ Y V +
Sbjct: 244 YINPPNPAKDNFTFKCHRSNGTNTS-----------APQ--DIYAVNG----------IA 280
Query: 117 FVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146
F +H T AT GSDG F+FWDKD++ +LK
Sbjct: 281 FHPVHGTLATVGSDGRFSFWDKDARTKLKT 310
>sp|P40066|GLE2_YEAST Nucleoporin GLE2 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=GLE2 PE=1 SV=1
Length = 365
Score = 110 bits (276), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 83/148 (56%), Gaps = 20/148 (13%)
Query: 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLD 60
+VV TA+R++ + NL NP T FK SPLK+Q RCVA + + G+ +GS+EGR + ++D
Sbjct: 179 LVVATAERHIAIINLANPTTIFKATTSPLKWQTRCVACYNEADGYAIGSVEGRCSIRYID 238
Query: 61 DSQQSKN-FTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQ 119
D Q K+ F+FKCHR + P + + L V S + F
Sbjct: 239 DGMQKKSGFSFKCHRQTN----------------PNRAPGSNGQSLVYPVNS---IAFHP 279
Query: 120 IHHTFATAGSDGAFNFWDKDSKQRLKVF 147
++ TF TAG DG FNFWDK+ + RLK +
Sbjct: 280 LYGTFVTAGGDGTFNFWDKNQRHRLKGY 307
>sp|P41838|RAE1_SCHPO Poly(A)+ RNA export protein OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rae1 PE=1 SV=1
Length = 352
Score = 105 bits (262), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 81/147 (55%), Gaps = 26/147 (17%)
Query: 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLD 60
+ V TA+RN+ V NL P FK SPLK+Q R +A F G+ +GS+EGR + ++D
Sbjct: 172 LTVATAERNICVINLSEPTKIFKLAMSPLKFQTRSLACFIKGDGYAIGSVEGRCAIQNID 231
Query: 61 DSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQI 120
+ S+NF+F+CHR+ AG++ + Y V + F
Sbjct: 232 EKNASQNFSFRCHRN-------------QAGNS---ADVYSVNS----------IAFHPQ 265
Query: 121 HHTFATAGSDGAFNFWDKDSKQRLKVF 147
+ TF+TAGSDG F+FWDKDS QRLK +
Sbjct: 266 YGTFSTAGSDGTFSFWDKDSHQRLKSY 292
>sp|Q9WVA3|BUB3_MOUSE Mitotic checkpoint protein BUB3 OS=Mus musculus GN=Bub3 PE=2 SV=2
Length = 326
Score = 96.7 bits (239), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 78/149 (52%), Gaps = 28/149 (18%)
Query: 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLD 60
++VGTA R ++V++L+N +R S LKYQ RC+ AFP++QG+ + SIEGRV V +LD
Sbjct: 150 LIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAFPNKQGYVLSSIEGRVAVEYLD 209
Query: 61 DSQ--QSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFV 118
S Q K + FKCHR I Y V + F
Sbjct: 210 PSPEVQKKKYAFKCHRLKENNIEQI----------------YPVN----------AISFH 243
Query: 119 QIHHTFATAGSDGAFNFWDKDSKQRLKVF 147
IH+TFAT GSDG N WD +K+RL F
Sbjct: 244 NIHNTFATGGSDGFVNIWDPFNKKRLCQF 272
>sp|Q1JQB2|BUB3_BOVIN Mitotic checkpoint protein BUB3 OS=Bos taurus GN=BUB3 PE=2 SV=1
Length = 326
Score = 96.7 bits (239), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 78/149 (52%), Gaps = 28/149 (18%)
Query: 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLD 60
++VGTA R ++V++L+N +R S LKYQ RC+ AFP++QG+ + SIEGRV V +LD
Sbjct: 150 LIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAFPNKQGYVLSSIEGRVAVEYLD 209
Query: 61 DSQ--QSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFV 118
S Q K + FKCHR I Y V + F
Sbjct: 210 PSPEVQKKKYAFKCHRLKENNIEQI----------------YPVN----------AISFH 243
Query: 119 QIHHTFATAGSDGAFNFWDKDSKQRLKVF 147
IH+TFAT GSDG N WD +K+RL F
Sbjct: 244 NIHNTFATGGSDGFVNIWDPFNKKRLCQF 272
>sp|O43684|BUB3_HUMAN Mitotic checkpoint protein BUB3 OS=Homo sapiens GN=BUB3 PE=1 SV=1
Length = 328
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 78/149 (52%), Gaps = 28/149 (18%)
Query: 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLD 60
++VGTA R ++V++L+N +R S LKYQ RC+ AFP++QG+ + SIEGRV V +LD
Sbjct: 150 LIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAFPNKQGYVLSSIEGRVAVEYLD 209
Query: 61 DSQ--QSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFV 118
S Q K + FKCHR I Y V + F
Sbjct: 210 PSPEVQKKKYAFKCHRLKENNIEQI----------------YPVN----------AISFH 243
Query: 119 QIHHTFATAGSDGAFNFWDKDSKQRLKVF 147
IH+TFAT GSDG N WD +K+RL F
Sbjct: 244 NIHNTFATGGSDGFVNIWDPFNKKRLCQF 272
>sp|Q9YGY3|BUB3_XENLA Mitotic checkpoint protein BUB3 OS=Xenopus laevis GN=bub3 PE=1 SV=1
Length = 330
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 78/149 (52%), Gaps = 28/149 (18%)
Query: 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLD 60
++VGTA R ++V++L+N +R S LKYQ RC+ AFP++QG+ + SIEGRV V +LD
Sbjct: 156 LIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAFPNKQGYVLSSIEGRVAVEYLD 215
Query: 61 DSQ--QSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFV 118
S Q K + FKCHR I Y V V F
Sbjct: 216 PSLEVQKKKYAFKCHRLKENNIEQI----------------YPVN----------AVSFH 249
Query: 119 QIHHTFATAGSDGAFNFWDKDSKQRLKVF 147
+H+TFAT GSDG N WD +K+RL F
Sbjct: 250 NLHNTFATGGSDGFVNIWDPFNKKRLCQF 278
>sp|Q93454|NPP17_CAEEL Nucleoporin-17 OS=Caenorhabditis elegans GN=npp-17 PE=1 SV=1
Length = 373
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 79/150 (52%), Gaps = 29/150 (19%)
Query: 2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQ-----GFWVGSIEGRVGV 56
VV A++++ V+NL+N TE K I S LK+Q+RC++ F D+ GF +GSIEGRV V
Sbjct: 190 VVALANKHIKVYNLENGPTEVKDIESQLKFQIRCISIFKDKSNQNPAGFALGSIEGRVAV 249
Query: 57 HHLDDSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVL 116
++D + NFTFKCHR ++ G + Y V +
Sbjct: 250 QYVDVANPKDNFTFKCHRSA----------ELVNG----FQEIYAVND----------IC 285
Query: 117 FVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146
F H T T GSDG ++ WDKD++ +LK
Sbjct: 286 FHPQHGTLVTIGSDGRYSMWDKDARTKLKT 315
>sp|Q5RB58|BUB3_PONAB Mitotic checkpoint protein BUB3 OS=Pongo abelii GN=BUB3 PE=2 SV=1
Length = 328
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 77/149 (51%), Gaps = 28/149 (18%)
Query: 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLD 60
++VGTA R ++V++L+N +R S LKYQ RC+ AF ++QG+ + SIEGRV V +LD
Sbjct: 150 LIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAFLNKQGYVLSSIEGRVAVEYLD 209
Query: 61 DSQ--QSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFV 118
S Q K + FKCHR I Y V + F
Sbjct: 210 PSPEVQKKKYAFKCHRLKENNIEQI----------------YPVN----------AISFH 243
Query: 119 QIHHTFATAGSDGAFNFWDKDSKQRLKVF 147
IH+TFAT GSDG N WD +K+RL F
Sbjct: 244 NIHNTFATGGSDGFVNIWDPFNKKRLCQF 272
>sp|O42860|BUB3_SCHPO Mitotic checkpoint protein bub3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=bub3 PE=1 SV=1
Length = 320
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 73/149 (48%), Gaps = 28/149 (18%)
Query: 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLD 60
+V+G ++R +V++++N + F+R S KY R V + +GF SIEGR V +++
Sbjct: 149 LVLGCSERENLVYDIRNLKLPFQRRPSSFKYMTRSVCCNQNFEGFVSSSIEGRTSVEYIN 208
Query: 61 DSQ--QSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFV 118
SQ QSKNFTFKCHR + Y Y V L F
Sbjct: 209 PSQEAQSKNFTFKCHRQIQK----------------DYDIVYPVNDLK----------FH 242
Query: 119 QIHHTFATAGSDGAFNFWDKDSKQRLKVF 147
IH T ATAG DG FWD ++RL+V
Sbjct: 243 PIHQTLATAGGDGVVAFWDIQVRKRLRVL 271
>sp|Q54DM1|BUB3_DICDI Mitotic checkpoint protein bub3 OS=Dictyostelium discoideum GN=bub3
PE=3 SV=1
Length = 331
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 72/146 (49%), Gaps = 28/146 (19%)
Query: 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLD 60
+V+GTAD+ + +++ + +T ++ S +KYQ RC+ F D +G+ + S+EGR+ + + D
Sbjct: 155 LVIGTADKYVTIYDTRQMETHLQKRESSIKYQTRCIRTFTDGKGYALASVEGRIAMEYFD 214
Query: 61 DSQ--QSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFV 118
S QSK + FKCHR V+ + +A + P Y
Sbjct: 215 PSPAVQSKKYAFKCHRLTESGVDVVYPVNCIAFN-PHYG--------------------- 252
Query: 119 QIHHTFATAGSDGAFNFWDKDSKQRL 144
TFAT G D FWD +++RL
Sbjct: 253 ----TFATGGCDKNVFFWDGANRKRL 274
>sp|P26449|BUB3_YEAST Cell cycle arrest protein BUB3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BUB3 PE=1 SV=1
Length = 341
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 56/126 (44%), Gaps = 31/126 (24%)
Query: 27 SPLKYQMRCVAAFP-DQQGFWVGSIEGRVGVHHLDDS----QQSKNFTFKCHRDGSETCS 81
S LKYQ+R VA P +Q+G+ SI+GRV V DD SK F F+CHR + +
Sbjct: 190 SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTN 249
Query: 82 VISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSK 141
+ Y V + F H TAGSDG + W+ ++
Sbjct: 250 LA----------------YPVNSIE----------FSPRHKFLYTAGSDGIISCWNLQTR 283
Query: 142 QRLKVF 147
+++K F
Sbjct: 284 KKIKNF 289
>sp|P0C656|MED12_CAEBR Mediator of RNA polymerase II transcription subunit 12
OS=Caenorhabditis briggsae GN=dpy-22 PE=3 SV=2
Length = 3902
Score = 35.0 bits (79), Expect = 0.16, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 44/102 (43%), Gaps = 9/102 (8%)
Query: 22 FKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCH-RDGSETC 80
F RIN Y A P +W+G+I+G + D SQ K K D S
Sbjct: 1713 FDRINELANYCANVTANDPPLSEYWIGAIKGLCCLCIDDSSQLFKEMAKKIDISDCSTHY 1772
Query: 81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHH 122
S+ +F + LAG A +FY + LH + +F Q+ H
Sbjct: 1773 SLSTFITCLAGKA----AFYIPRLLHKLTEE----VFSQMLH 1806
>sp|Q9UNX4|WDR3_HUMAN WD repeat-containing protein 3 OS=Homo sapiens GN=WDR3 PE=1 SV=1
Length = 943
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 49/127 (38%), Gaps = 11/127 (8%)
Query: 29 LKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNF--------TFKCHRDGSETC 80
LK ++ C+ PD VG +G + + L + + F T K + G
Sbjct: 64 LKQEVTCLCPSPDGLHLAVGYEDGSIRIFSLLSGEGNVTFNGHKAAITTLKYDQLGGRLA 123
Query: 81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDS 140
S T I+ D S Y++K + LF++ + T+G D +WD D+
Sbjct: 124 SGSKDTDIIVWDVINESGLYRLKGHKDAITQ---ALFLREKNLLVTSGKDTMVKWWDLDT 180
Query: 141 KQRLKVF 147
+ K
Sbjct: 181 QHCFKTM 187
>sp|Q323M9|HCP_SHIBS Hydroxylamine reductase OS=Shigella boydii serotype 4 (strain
Sb227) GN=hcp PE=3 SV=1
Length = 552
Score = 34.3 bits (77), Expect = 0.28, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 16 QNPQTEFKRINSPLKYQMRC-----VAAFPDQQGFWVGSIEGRVGVHHLD 60
QN Q EF R P+ C V+A+ D+ W SI G GV HLD
Sbjct: 300 QNQQVEFARFPGPIVMTSNCIIDPTVSAYDDR--IWTRSIVGWPGVRHLD 347
>sp|B2TUK6|HCP_SHIB3 Hydroxylamine reductase OS=Shigella boydii serotype 18 (strain CDC
3083-94 / BS512) GN=hcp PE=3 SV=1
Length = 550
Score = 34.3 bits (77), Expect = 0.28, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 16 QNPQTEFKRINSPLKYQMRC-----VAAFPDQQGFWVGSIEGRVGVHHLD 60
QN Q EF R P+ C V+A+ D+ W SI G GV HLD
Sbjct: 298 QNQQVEFARFPGPIVMTSNCIIDPTVSAYDDR--IWTRSIVGWPGVRHLD 345
>sp|Q3Z3R0|HCP_SHISS Hydroxylamine reductase OS=Shigella sonnei (strain Ss046) GN=hcp
PE=3 SV=1
Length = 552
Score = 33.9 bits (76), Expect = 0.37, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 16 QNPQTEFKRINSPLKYQMRC-----VAAFPDQQGFWVGSIEGRVGVHHLD 60
QN Q EF R P+ C V A+ D+ W SI G GV HLD
Sbjct: 300 QNQQVEFARFPGPIVMTSNCIIDPTVGAYDDR--IWTRSIVGWPGVRHLD 347
>sp|Q83S05|HCP_SHIFL Hydroxylamine reductase OS=Shigella flexneri GN=hcp PE=3 SV=1
Length = 552
Score = 33.9 bits (76), Expect = 0.37, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 16 QNPQTEFKRINSPLKYQMRC-----VAAFPDQQGFWVGSIEGRVGVHHLD 60
QN Q EF R P+ C V A+ D+ W SI G GV HLD
Sbjct: 300 QNQQVEFARFPGPIVMTSNCIIDPTVGAYDDR--IWTRSIVGWPGVRHLD 347
>sp|Q0T8K8|HCP_SHIF8 Hydroxylamine reductase OS=Shigella flexneri serotype 5b (strain
8401) GN=hcp PE=3 SV=1
Length = 550
Score = 33.9 bits (76), Expect = 0.37, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 16 QNPQTEFKRINSPLKYQMRC-----VAAFPDQQGFWVGSIEGRVGVHHLD 60
QN Q EF R P+ C V A+ D+ W SI G GV HLD
Sbjct: 298 QNQQVEFARFPGPIVMTSNCIIDPTVGAYDDR--IWTRSIVGWPGVRHLD 345
>sp|Q32DZ1|HCP_SHIDS Hydroxylamine reductase OS=Shigella dysenteriae serotype 1 (strain
Sd197) GN=hcp PE=3 SV=1
Length = 552
Score = 33.9 bits (76), Expect = 0.37, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 16 QNPQTEFKRINSPLKYQMRC-----VAAFPDQQGFWVGSIEGRVGVHHLD 60
QN Q EF R P+ C V A+ D+ W SI G GV HLD
Sbjct: 300 QNQQVEFARFPGPIVMTSNCIIDPTVGAYDDR--IWTRSIVGWPGVRHLD 347
>sp|B7LN38|HCP_ESCF3 Hydroxylamine reductase OS=Escherichia fergusonii (strain ATCC
35469 / DSM 13698 / CDC 0568-73) GN=hcp PE=3 SV=1
Length = 550
Score = 33.9 bits (76), Expect = 0.37, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 16 QNPQTEFKRINSPLKYQMRC-----VAAFPDQQGFWVGSIEGRVGVHHLD 60
QN Q EF R P+ C V A+ D+ W SI G GV HLD
Sbjct: 298 QNQQVEFARFPGPIVMTSNCIIDPTVGAYDDR--IWTRSIVGWPGVRHLD 345
>sp|Q1RE52|HCP_ECOUT Hydroxylamine reductase OS=Escherichia coli (strain UTI89 / UPEC)
GN=hcp PE=3 SV=1
Length = 552
Score = 33.9 bits (76), Expect = 0.37, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 16 QNPQTEFKRINSPLKYQMRC-----VAAFPDQQGFWVGSIEGRVGVHHLD 60
QN Q EF R P+ C V A+ D+ W SI G GV HLD
Sbjct: 300 QNQQVEFARFPGPIVMTSNCIIDPTVGAYDDR--IWTRSIVGWPGVRHLD 347
>sp|B1LN27|HCP_ECOSM Hydroxylamine reductase OS=Escherichia coli (strain SMS-3-5 /
SECEC) GN=hcp PE=3 SV=1
Length = 550
Score = 33.9 bits (76), Expect = 0.37, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 16 QNPQTEFKRINSPLKYQMRC-----VAAFPDQQGFWVGSIEGRVGVHHLD 60
QN Q EF R P+ C V A+ D+ W SI G GV HLD
Sbjct: 298 QNQQVEFARFPGPIVMTSNCIIDPTVGAYDDR--IWTRSIVGWPGVRHLD 345
>sp|B6I8U4|HCP_ECOSE Hydroxylamine reductase OS=Escherichia coli (strain SE11) GN=hcp
PE=3 SV=1
Length = 550
Score = 33.9 bits (76), Expect = 0.37, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 16 QNPQTEFKRINSPLKYQMRC-----VAAFPDQQGFWVGSIEGRVGVHHLD 60
QN Q EF R P+ C V A+ D+ W SI G GV HLD
Sbjct: 298 QNQQVEFARFPGPIVMTSNCIIDPTVGAYDDR--IWTRSIVGWPGVRHLD 345
>sp|B7NAM4|HCP_ECOLU Hydroxylamine reductase OS=Escherichia coli O17:K52:H18 (strain
UMN026 / ExPEC) GN=hcp PE=3 SV=1
Length = 550
Score = 33.9 bits (76), Expect = 0.37, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 16 QNPQTEFKRINSPLKYQMRC-----VAAFPDQQGFWVGSIEGRVGVHHLD 60
QN Q EF R P+ C V A+ D+ W SI G GV HLD
Sbjct: 298 QNQQVEFARFPGPIVMTSNCIIDPTVGAYDDR--IWTRSIVGWPGVRHLD 345
>sp|P75825|HCP_ECOLI Hydroxylamine reductase OS=Escherichia coli (strain K12) GN=hcp
PE=1 SV=2
Length = 550
Score = 33.9 bits (76), Expect = 0.37, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 16 QNPQTEFKRINSPLKYQMRC-----VAAFPDQQGFWVGSIEGRVGVHHLD 60
QN Q EF R P+ C V A+ D+ W SI G GV HLD
Sbjct: 298 QNQQVEFARFPGPIVMTSNCIIDPTVGAYDDR--IWTRSIVGWPGVRHLD 345
>sp|B1IWP9|HCP_ECOLC Hydroxylamine reductase OS=Escherichia coli (strain ATCC 8739 / DSM
1576 / Crooks) GN=hcp PE=3 SV=1
Length = 550
Score = 33.9 bits (76), Expect = 0.37, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 16 QNPQTEFKRINSPLKYQMRC-----VAAFPDQQGFWVGSIEGRVGVHHLD 60
QN Q EF R P+ C V A+ D+ W SI G GV HLD
Sbjct: 298 QNQQVEFARFPGPIVMTSNCIIDPTVGAYDDR--IWTRSIVGWPGVRHLD 345
>sp|Q8FJE0|HCP_ECOL6 Hydroxylamine reductase OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=hcp PE=3 SV=2
Length = 550
Score = 33.9 bits (76), Expect = 0.37, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 16 QNPQTEFKRINSPLKYQMRC-----VAAFPDQQGFWVGSIEGRVGVHHLD 60
QN Q EF R P+ C V A+ D+ W SI G GV HLD
Sbjct: 298 QNQQVEFARFPGPIVMTSNCIIDPTVGAYDDR--IWTRSIVGWPGVRHLD 345
>sp|Q0TJH6|HCP_ECOL5 Hydroxylamine reductase OS=Escherichia coli O6:K15:H31 (strain 536
/ UPEC) GN=hcp PE=3 SV=1
Length = 550
Score = 33.9 bits (76), Expect = 0.37, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 16 QNPQTEFKRINSPLKYQMRC-----VAAFPDQQGFWVGSIEGRVGVHHLD 60
QN Q EF R P+ C V A+ D+ W SI G GV HLD
Sbjct: 298 QNQQVEFARFPGPIVMTSNCIIDPTVGAYDDR--IWTRSIVGWPGVRHLD 345
>sp|A1A9B1|HCP_ECOK1 Hydroxylamine reductase OS=Escherichia coli O1:K1 / APEC GN=hcp
PE=3 SV=1
Length = 552
Score = 33.9 bits (76), Expect = 0.37, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 16 QNPQTEFKRINSPLKYQMRC-----VAAFPDQQGFWVGSIEGRVGVHHLD 60
QN Q EF R P+ C V A+ D+ W SI G GV HLD
Sbjct: 300 QNQQVEFARFPGPIVMTSNCIIDPTVGAYDDR--IWTRSIVGWPGVRHLD 347
>sp|A7ZYH7|HCP_ECOHS Hydroxylamine reductase OS=Escherichia coli O9:H4 (strain HS)
GN=hcp PE=3 SV=1
Length = 550
Score = 33.9 bits (76), Expect = 0.37, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 16 QNPQTEFKRINSPLKYQMRC-----VAAFPDQQGFWVGSIEGRVGVHHLD 60
QN Q EF R P+ C V A+ D+ W SI G GV HLD
Sbjct: 298 QNQQVEFARFPGPIVMTSNCIIDPTVGAYDDR--IWTRSIVGWPGVRHLD 345
>sp|B1X814|HCP_ECODH Hydroxylamine reductase OS=Escherichia coli (strain K12 / DH10B)
GN=hcp PE=3 SV=1
Length = 550
Score = 33.9 bits (76), Expect = 0.37, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 16 QNPQTEFKRINSPLKYQMRC-----VAAFPDQQGFWVGSIEGRVGVHHLD 60
QN Q EF R P+ C V A+ D+ W SI G GV HLD
Sbjct: 298 QNQQVEFARFPGPIVMTSNCIIDPTVGAYDDR--IWTRSIVGWPGVRHLD 345
>sp|C4ZY45|HCP_ECOBW Hydroxylamine reductase OS=Escherichia coli (strain K12 / MC4100 /
BW2952) GN=hcp PE=3 SV=1
Length = 550
Score = 33.9 bits (76), Expect = 0.37, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 16 QNPQTEFKRINSPLKYQMRC-----VAAFPDQQGFWVGSIEGRVGVHHLD 60
QN Q EF R P+ C V A+ D+ W SI G GV HLD
Sbjct: 298 QNQQVEFARFPGPIVMTSNCIIDPTVGAYDDR--IWTRSIVGWPGVRHLD 345
>sp|B7M801|HCP_ECO8A Hydroxylamine reductase OS=Escherichia coli O8 (strain IAI1) GN=hcp
PE=3 SV=1
Length = 550
Score = 33.9 bits (76), Expect = 0.37, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 16 QNPQTEFKRINSPLKYQMRC-----VAAFPDQQGFWVGSIEGRVGVHHLD 60
QN Q EF R P+ C V A+ D+ W SI G GV HLD
Sbjct: 298 QNQQVEFARFPGPIVMTSNCIIDPTVGAYDDR--IWTRSIVGWPGVRHLD 345
>sp|B7MQX7|HCP_ECO81 Hydroxylamine reductase OS=Escherichia coli O81 (strain ED1a)
GN=hcp PE=3 SV=1
Length = 550
Score = 33.9 bits (76), Expect = 0.37, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 16 QNPQTEFKRINSPLKYQMRC-----VAAFPDQQGFWVGSIEGRVGVHHLD 60
QN Q EF R P+ C V A+ D+ W SI G GV HLD
Sbjct: 298 QNQQVEFARFPGPIVMTSNCIIDPTVGAYDDR--IWTRSIVGWPGVRHLD 345
>sp|B7NPH0|HCP_ECO7I Hydroxylamine reductase OS=Escherichia coli O7:K1 (strain IAI39 /
ExPEC) GN=hcp PE=3 SV=1
Length = 550
Score = 33.9 bits (76), Expect = 0.37, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 16 QNPQTEFKRINSPLKYQMRC-----VAAFPDQQGFWVGSIEGRVGVHHLD 60
QN Q EF R P+ C V A+ D+ W SI G GV HLD
Sbjct: 298 QNQQVEFARFPGPIVMTSNCIIDPTVGAYDDR--IWTRSIVGWPGVRHLD 345
>sp|B5YSG9|HCP_ECO5E Hydroxylamine reductase OS=Escherichia coli O157:H7 (strain EC4115
/ EHEC) GN=hcp PE=3 SV=1
Length = 550
Score = 33.9 bits (76), Expect = 0.37, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 16 QNPQTEFKRINSPLKYQMRC-----VAAFPDQQGFWVGSIEGRVGVHHLD 60
QN Q EF R P+ C V A+ D+ W SI G GV HLD
Sbjct: 298 QNQQVEFARFPGPIVMTSNCIIDPTVGAYDDR--IWTRSIVGWPGVRHLD 345
>sp|Q8X6L0|HCP_ECO57 Hydroxylamine reductase OS=Escherichia coli O157:H7 GN=hcp PE=3
SV=2
Length = 550
Score = 33.9 bits (76), Expect = 0.37, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 16 QNPQTEFKRINSPLKYQMRC-----VAAFPDQQGFWVGSIEGRVGVHHLD 60
QN Q EF R P+ C V A+ D+ W SI G GV HLD
Sbjct: 298 QNQQVEFARFPGPIVMTSNCIIDPTVGAYDDR--IWTRSIVGWPGVRHLD 345
>sp|B7LD66|HCP_ECO55 Hydroxylamine reductase OS=Escherichia coli (strain 55989 / EAEC)
GN=hcp PE=3 SV=1
Length = 550
Score = 33.9 bits (76), Expect = 0.37, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 16 QNPQTEFKRINSPLKYQMRC-----VAAFPDQQGFWVGSIEGRVGVHHLD 60
QN Q EF R P+ C V A+ D+ W SI G GV HLD
Sbjct: 298 QNQQVEFARFPGPIVMTSNCIIDPTVGAYDDR--IWTRSIVGWPGVRHLD 345
>sp|B7MHH8|HCP_ECO45 Hydroxylamine reductase OS=Escherichia coli O45:K1 (strain S88 /
ExPEC) GN=hcp PE=3 SV=1
Length = 550
Score = 33.9 bits (76), Expect = 0.37, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 16 QNPQTEFKRINSPLKYQMRC-----VAAFPDQQGFWVGSIEGRVGVHHLD 60
QN Q EF R P+ C V A+ D+ W SI G GV HLD
Sbjct: 298 QNQQVEFARFPGPIVMTSNCIIDPTVGAYDDR--IWTRSIVGWPGVRHLD 345
>sp|B7UMW5|HCP_ECO27 Hydroxylamine reductase OS=Escherichia coli O127:H6 (strain
E2348/69 / EPEC) GN=hcp PE=3 SV=1
Length = 550
Score = 33.9 bits (76), Expect = 0.37, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 16 QNPQTEFKRINSPLKYQMRC-----VAAFPDQQGFWVGSIEGRVGVHHLD 60
QN Q EF R P+ C V A+ D+ W SI G GV HLD
Sbjct: 298 QNQQVEFARFPGPIVMTSNCIIDPTVGAYDDR--IWTRSIVGWPGVRHLD 345
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.137 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,106,255
Number of Sequences: 539616
Number of extensions: 2065191
Number of successful extensions: 4917
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 4798
Number of HSP's gapped (non-prelim): 108
length of query: 147
length of database: 191,569,459
effective HSP length: 106
effective length of query: 41
effective length of database: 134,370,163
effective search space: 5509176683
effective search space used: 5509176683
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)