Query 032092
Match_columns 147
No_of_seqs 151 out of 1114
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 09:29:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032092.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032092hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0272 U4/U6 small nuclear ri 99.9 7.6E-23 1.6E-27 157.6 9.0 141 1-146 234-382 (459)
2 KOG1036 Mitotic spindle checkp 99.9 2.5E-21 5.4E-26 144.3 10.5 117 1-147 148-270 (323)
3 KOG0263 Transcription initiati 99.8 4.4E-21 9.6E-26 156.3 9.1 102 1-141 550-651 (707)
4 KOG0263 Transcription initiati 99.8 2E-20 4.3E-25 152.6 11.7 143 1-147 466-615 (707)
5 KOG0272 U4/U6 small nuclear ri 99.8 9.4E-21 2E-25 146.1 8.9 142 1-146 276-425 (459)
6 KOG0271 Notchless-like WD40 re 99.8 3.4E-20 7.4E-25 142.0 10.4 142 1-147 220-405 (480)
7 KOG0279 G protein beta subunit 99.8 6.2E-19 1.3E-23 130.3 13.8 141 2-147 79-230 (315)
8 KOG0271 Notchless-like WD40 re 99.8 1.7E-19 3.6E-24 138.2 10.9 134 1-137 339-479 (480)
9 KOG0647 mRNA export protein (c 99.8 3.3E-19 7.2E-24 133.0 11.2 115 2-146 170-288 (347)
10 KOG0286 G-protein beta subunit 99.8 1.4E-18 3E-23 129.3 13.9 139 1-144 159-308 (343)
11 PTZ00421 coronin; Provisional 99.8 7.5E-19 1.6E-23 142.3 13.6 108 1-146 91-205 (493)
12 KOG0266 WD40 repeat-containing 99.8 6.4E-19 1.4E-23 141.7 12.6 104 1-142 218-321 (456)
13 KOG0286 G-protein beta subunit 99.8 1E-17 2.2E-22 124.6 15.0 145 1-147 70-225 (343)
14 KOG0279 G protein beta subunit 99.8 1.1E-17 2.4E-22 123.8 13.8 144 1-147 31-188 (315)
15 KOG0285 Pleiotropic regulator 99.8 6.6E-18 1.4E-22 128.7 12.7 141 1-145 166-313 (460)
16 KOG0275 Conserved WD40 repeat- 99.8 2E-19 4.3E-24 135.9 4.3 109 1-147 278-386 (508)
17 KOG0315 G-protein beta subunit 99.8 3E-17 6.5E-22 120.1 13.7 136 1-141 98-247 (311)
18 KOG0265 U5 snRNP-specific prot 99.8 1.8E-17 3.9E-22 123.6 12.0 141 1-146 148-303 (338)
19 KOG0319 WD40-repeat-containing 99.8 9E-18 1.9E-22 136.7 11.3 145 1-147 427-585 (775)
20 PTZ00421 coronin; Provisional 99.8 7.9E-17 1.7E-21 130.6 16.7 141 1-145 141-296 (493)
21 KOG0315 G-protein beta subunit 99.7 5.9E-17 1.3E-21 118.6 13.9 146 1-147 139-296 (311)
22 KOG0645 WD40 repeat protein [G 99.7 9.7E-17 2.1E-21 118.4 15.0 139 1-139 30-180 (312)
23 KOG0273 Beta-transducin family 99.7 2.3E-17 5E-22 129.0 12.3 143 1-147 332-490 (524)
24 PTZ00420 coronin; Provisional 99.7 2.6E-17 5.7E-22 134.8 13.0 107 1-146 90-204 (568)
25 KOG0266 WD40 repeat-containing 99.7 2E-17 4.4E-22 133.1 11.3 109 1-147 174-284 (456)
26 KOG0276 Vesicle coat complex C 99.7 2.9E-17 6.2E-22 132.2 11.8 143 1-146 112-264 (794)
27 KOG0318 WD40 repeat stress pro 99.7 4E-17 8.7E-22 129.1 11.4 108 1-147 163-273 (603)
28 KOG0277 Peroxisomal targeting 99.7 6.6E-17 1.4E-21 118.6 11.4 138 1-141 76-223 (311)
29 KOG0276 Vesicle coat complex C 99.7 5.6E-17 1.2E-21 130.5 11.7 143 1-146 70-222 (794)
30 KOG0284 Polyadenylation factor 99.7 8.5E-18 1.8E-22 129.5 6.5 107 1-146 195-301 (464)
31 KOG0291 WD40-repeat-containing 99.7 1.9E-16 4E-21 129.6 14.1 136 1-140 365-509 (893)
32 KOG1407 WD40 repeat protein [F 99.7 9.1E-17 2E-21 118.1 11.1 141 1-147 80-227 (313)
33 KOG0296 Angio-associated migra 99.7 1.8E-16 4E-21 120.7 13.1 141 1-146 79-227 (399)
34 KOG0316 Conserved WD40 repeat- 99.7 6.6E-17 1.4E-21 117.6 8.8 106 1-145 158-263 (307)
35 KOG0308 Conserved WD40 repeat- 99.7 7E-17 1.5E-21 130.2 9.7 110 1-147 133-251 (735)
36 KOG0643 Translation initiation 99.7 4E-17 8.6E-22 120.4 7.4 135 1-139 162-317 (327)
37 KOG0302 Ribosome Assembly prot 99.7 1.5E-16 3.3E-21 121.7 10.4 102 1-139 273-378 (440)
38 PTZ00420 coronin; Provisional 99.7 4.7E-16 1E-20 127.5 13.3 110 1-145 141-255 (568)
39 KOG0282 mRNA splicing factor [ 99.7 9.7E-17 2.1E-21 125.7 8.8 140 1-145 273-468 (503)
40 KOG0273 Beta-transducin family 99.7 7.7E-16 1.7E-20 120.5 13.7 138 1-144 250-394 (524)
41 KOG0269 WD40 repeat-containing 99.7 1.3E-16 2.8E-21 130.7 9.0 138 1-141 103-252 (839)
42 KOG0295 WD40 repeat-containing 99.7 1.5E-15 3.2E-20 115.9 13.6 142 1-146 208-371 (406)
43 KOG0772 Uncharacterized conser 99.7 1.2E-16 2.7E-21 126.3 7.9 111 1-146 284-402 (641)
44 KOG1446 Histone H3 (Lys4) meth 99.7 1.2E-15 2.7E-20 114.2 12.7 111 2-146 156-269 (311)
45 KOG0282 mRNA splicing factor [ 99.7 5.7E-17 1.2E-21 127.0 5.7 108 1-147 230-338 (503)
46 PLN00181 protein SPA1-RELATED; 99.7 3.1E-15 6.6E-20 127.4 16.7 136 1-142 591-741 (793)
47 PLN00181 protein SPA1-RELATED; 99.7 3.8E-15 8.1E-20 126.9 16.6 135 1-140 548-691 (793)
48 KOG0264 Nucleosome remodeling 99.7 5.6E-16 1.2E-20 120.3 10.3 102 1-140 243-348 (422)
49 KOG0278 Serine/threonine kinas 99.7 1.8E-15 3.9E-20 111.0 11.2 135 1-142 158-300 (334)
50 cd00200 WD40 WD40 domain, foun 99.7 1.9E-14 4.2E-19 104.7 16.8 142 1-146 24-172 (289)
51 KOG0284 Polyadenylation factor 99.7 1.1E-16 2.4E-21 123.4 4.9 107 1-146 153-259 (464)
52 cd00200 WD40 WD40 domain, foun 99.6 2.2E-14 4.8E-19 104.4 16.6 142 1-146 66-214 (289)
53 KOG0316 Conserved WD40 repeat- 99.6 3.1E-15 6.8E-20 108.9 11.5 143 1-147 74-221 (307)
54 KOG0264 Nucleosome remodeling 99.6 9.3E-16 2E-20 119.1 8.3 110 1-147 193-312 (422)
55 KOG0281 Beta-TrCP (transducin 99.6 6.2E-16 1.3E-20 117.9 7.2 137 1-145 210-354 (499)
56 KOG0274 Cdc4 and related F-box 99.6 3.3E-15 7.2E-20 121.9 11.4 139 2-146 305-448 (537)
57 KOG0285 Pleiotropic regulator 99.6 6.8E-15 1.5E-19 112.4 11.9 138 1-143 250-393 (460)
58 KOG0318 WD40 repeat stress pro 99.6 1.7E-14 3.6E-19 114.4 14.4 140 1-143 205-354 (603)
59 KOG0289 mRNA splicing factor [ 99.6 2.5E-15 5.4E-20 116.8 9.5 110 1-147 318-427 (506)
60 KOG0292 Vesicle coat complex C 99.6 8.3E-15 1.8E-19 121.9 12.9 145 1-147 108-288 (1202)
61 KOG0281 Beta-TrCP (transducin 99.6 1.1E-15 2.5E-20 116.4 7.2 141 1-145 250-394 (499)
62 KOG0319 WD40-repeat-containing 99.6 5.8E-15 1.3E-19 120.5 11.7 136 1-140 478-620 (775)
63 KOG0283 WD40 repeat-containing 99.6 5.1E-15 1.1E-19 121.8 9.7 105 1-146 383-488 (712)
64 KOG0292 Vesicle coat complex C 99.6 4.6E-15 1E-19 123.4 9.3 136 1-140 24-166 (1202)
65 KOG0277 Peroxisomal targeting 99.6 2.5E-14 5.5E-19 105.1 11.5 136 2-141 121-267 (311)
66 KOG0267 Microtubule severing p 99.6 1.3E-15 2.9E-20 124.1 5.0 108 1-147 85-192 (825)
67 KOG0645 WD40 repeat protein [G 99.6 1.6E-13 3.4E-18 101.6 15.4 137 1-138 76-224 (312)
68 KOG0305 Anaphase promoting com 99.6 7.2E-15 1.6E-19 117.5 8.6 108 1-146 273-383 (484)
69 KOG0265 U5 snRNP-specific prot 99.6 6.3E-14 1.4E-18 104.8 12.9 143 1-146 62-211 (338)
70 KOG0647 mRNA export protein (c 99.6 1.9E-14 4.1E-19 107.7 10.1 108 1-146 43-152 (347)
71 KOG0291 WD40-repeat-containing 99.6 2.1E-14 4.6E-19 117.8 10.4 107 2-147 323-430 (893)
72 KOG0640 mRNA cleavage stimulat 99.6 9.3E-15 2E-19 110.1 6.6 111 1-147 187-299 (430)
73 KOG0295 WD40 repeat-containing 99.6 3.3E-14 7.1E-19 108.6 9.6 98 1-137 307-404 (406)
74 KOG0288 WD40 repeat protein Ti 99.5 6E-14 1.3E-18 108.6 10.8 108 2-145 316-423 (459)
75 KOG0313 Microtubule binding pr 99.5 4E-14 8.6E-19 108.6 9.3 106 1-146 274-384 (423)
76 KOG0306 WD40-repeat-containing 99.5 1.2E-13 2.5E-18 113.4 12.5 142 3-146 38-186 (888)
77 KOG0274 Cdc4 and related F-box 99.5 3.5E-13 7.7E-18 110.1 14.9 142 1-147 221-367 (537)
78 KOG0294 WD40 repeat-containing 99.5 4.6E-14 9.9E-19 106.2 8.7 104 1-143 56-161 (362)
79 KOG0643 Translation initiation 99.5 4.8E-13 1E-17 99.0 13.6 142 1-147 67-228 (327)
80 KOG0270 WD40 repeat-containing 99.5 3.4E-13 7.4E-18 105.1 13.3 135 1-140 259-405 (463)
81 KOG0305 Anaphase promoting com 99.5 1.6E-13 3.4E-18 109.9 11.7 137 5-146 194-338 (484)
82 KOG0310 Conserved WD40 repeat- 99.5 3.3E-13 7.2E-18 106.0 13.1 141 1-147 126-276 (487)
83 KOG0646 WD40 repeat protein [G 99.5 8.2E-14 1.8E-18 109.0 9.6 108 1-146 191-314 (476)
84 KOG0640 mRNA cleavage stimulat 99.5 4.6E-14 1E-18 106.4 7.8 111 1-147 231-343 (430)
85 KOG4283 Transcription-coupled 99.5 4.1E-13 8.9E-18 100.7 11.3 139 1-141 59-221 (397)
86 KOG0973 Histone transcription 99.5 5.6E-13 1.2E-17 112.5 13.0 142 1-144 28-206 (942)
87 KOG0310 Conserved WD40 repeat- 99.5 9.2E-14 2E-18 109.1 7.5 107 1-146 83-192 (487)
88 KOG1273 WD40 repeat protein [G 99.5 7.6E-13 1.7E-17 99.9 12.1 141 1-147 38-191 (405)
89 KOG0293 WD40 repeat-containing 99.5 1.2E-13 2.6E-18 107.2 7.7 134 2-140 370-514 (519)
90 KOG0267 Microtubule severing p 99.5 4.3E-14 9.3E-19 115.5 5.5 105 2-145 128-232 (825)
91 KOG1009 Chromatin assembly com 99.5 4E-13 8.6E-18 103.8 9.9 109 1-146 29-160 (434)
92 KOG1332 Vesicle coat complex C 99.5 1.1E-12 2.4E-17 96.1 11.6 138 1-141 26-195 (299)
93 KOG0307 Vesicle coat complex C 99.5 9.3E-14 2E-18 117.7 6.6 145 1-147 132-292 (1049)
94 KOG0639 Transducin-like enhanc 99.5 6.9E-14 1.5E-18 110.8 4.9 108 1-146 480-588 (705)
95 KOG0306 WD40-repeat-containing 99.5 3.4E-13 7.5E-18 110.7 9.1 110 1-147 469-588 (888)
96 KOG0289 mRNA splicing factor [ 99.5 8E-13 1.7E-17 103.0 10.5 110 1-147 276-385 (506)
97 KOG0303 Actin-binding protein 99.4 4.4E-13 9.5E-18 103.5 8.8 107 1-146 97-210 (472)
98 KOG0269 WD40 repeat-containing 99.4 2.6E-13 5.6E-18 111.6 7.6 103 1-140 192-297 (839)
99 KOG0283 WD40 repeat-containing 99.4 1.5E-12 3.3E-17 107.4 12.0 135 1-140 425-577 (712)
100 KOG0772 Uncharacterized conser 99.4 1.2E-12 2.5E-17 104.1 10.7 137 1-140 182-348 (641)
101 KOG2110 Uncharacterized conser 99.4 2.7E-12 5.9E-17 98.3 11.7 99 6-141 151-250 (391)
102 KOG4283 Transcription-coupled 99.4 1E-12 2.3E-17 98.5 9.0 117 1-142 161-279 (397)
103 KOG0275 Conserved WD40 repeat- 99.4 4.2E-14 9.2E-19 107.3 1.5 109 1-147 228-344 (508)
104 KOG0299 U3 snoRNP-associated p 99.4 1.4E-12 3E-17 102.1 9.6 140 1-147 217-364 (479)
105 PF08662 eIF2A: Eukaryotic tra 99.4 1.5E-11 3.2E-16 88.8 14.4 135 8-146 37-185 (194)
106 KOG1332 Vesicle coat complex C 99.4 1.2E-12 2.7E-17 95.8 8.7 138 1-139 73-241 (299)
107 KOG0268 Sof1-like rRNA process 99.4 3.2E-13 7E-18 103.3 5.1 102 1-142 203-305 (433)
108 KOG0300 WD40 repeat-containing 99.4 1.9E-12 4.1E-17 98.1 9.0 138 1-141 163-388 (481)
109 KOG1446 Histone H3 (Lys4) meth 99.4 3.9E-12 8.4E-17 95.6 10.3 135 1-141 29-172 (311)
110 KOG1273 WD40 repeat protein [G 99.4 8.4E-13 1.8E-17 99.7 6.6 78 33-147 26-103 (405)
111 KOG1274 WD40 repeat protein [G 99.4 9.4E-12 2E-16 104.0 13.4 136 1-140 111-263 (933)
112 KOG1539 WD repeat protein [Gen 99.4 4.1E-12 9E-17 105.3 11.1 140 2-145 464-612 (910)
113 KOG3881 Uncharacterized conser 99.4 2.3E-12 4.9E-17 99.3 8.8 108 1-146 219-327 (412)
114 TIGR03866 PQQ_ABC_repeats PQQ- 99.4 1.2E-11 2.6E-16 92.5 12.4 105 1-146 4-110 (300)
115 KOG0313 Microtubule binding pr 99.4 9.2E-12 2E-16 95.8 11.8 140 1-141 162-332 (423)
116 KOG0294 WD40 repeat-containing 99.4 2.1E-11 4.5E-16 92.1 13.3 137 1-141 100-283 (362)
117 KOG0296 Angio-associated migra 99.4 4.1E-12 8.9E-17 97.2 9.4 98 1-139 301-398 (399)
118 KOG0301 Phospholipase A2-activ 99.4 4.2E-12 9.2E-17 103.5 9.8 136 1-146 74-214 (745)
119 TIGR03866 PQQ_ABC_repeats PQQ- 99.4 1E-10 2.2E-15 87.4 16.6 139 2-145 47-193 (300)
120 KOG0301 Phospholipase A2-activ 99.4 3.6E-12 7.8E-17 103.9 8.8 142 1-147 28-175 (745)
121 KOG1034 Transcriptional repres 99.4 2.7E-12 5.8E-17 97.3 7.4 102 1-141 108-213 (385)
122 KOG1445 Tumor-specific antigen 99.3 1.6E-12 3.5E-17 105.6 6.3 103 1-141 643-752 (1012)
123 KOG0278 Serine/threonine kinas 99.3 2.8E-12 6.1E-17 94.4 6.7 107 1-147 115-221 (334)
124 KOG1274 WD40 repeat protein [G 99.3 7.9E-12 1.7E-16 104.4 10.0 107 1-146 69-175 (933)
125 KOG0642 Cell-cycle nuclear pro 99.3 5.9E-12 1.3E-16 100.6 8.8 107 1-143 309-430 (577)
126 KOG0646 WD40 repeat protein [G 99.3 7.1E-12 1.5E-16 98.3 9.0 111 2-147 97-214 (476)
127 KOG0771 Prolactin regulatory e 99.3 1.3E-11 2.8E-16 95.6 10.2 140 1-145 159-317 (398)
128 KOG2110 Uncharacterized conser 99.3 1.3E-11 2.8E-16 94.6 9.9 107 2-147 101-212 (391)
129 KOG2048 WD40 repeat protein [G 99.3 1.3E-10 2.8E-15 94.7 15.9 142 1-145 40-190 (691)
130 KOG0293 WD40 repeat-containing 99.3 8.2E-12 1.8E-16 97.1 8.7 103 1-140 239-343 (519)
131 KOG1408 WD40 repeat protein [F 99.3 6.5E-12 1.4E-16 103.2 8.4 115 31-147 460-634 (1080)
132 KOG2096 WD40 repeat protein [G 99.3 6.8E-12 1.5E-16 95.0 7.9 99 1-139 202-308 (420)
133 KOG4378 Nuclear protein COP1 [ 99.3 1.2E-11 2.5E-16 98.2 9.0 102 1-141 180-282 (673)
134 KOG1539 WD repeat protein [Gen 99.3 3.7E-11 7.9E-16 99.8 11.6 106 1-145 175-281 (910)
135 KOG0300 WD40 repeat-containing 99.3 4.6E-11 9.9E-16 90.7 11.0 139 1-142 287-431 (481)
136 KOG0299 U3 snoRNP-associated p 99.3 9.7E-12 2.1E-16 97.4 7.4 108 2-146 158-281 (479)
137 KOG0641 WD40 repeat protein [G 99.3 3.4E-11 7.3E-16 87.8 9.4 101 1-139 197-303 (350)
138 KOG0288 WD40 repeat protein Ti 99.3 6.7E-13 1.4E-17 102.8 0.6 143 1-146 190-337 (459)
139 KOG1407 WD40 repeat protein [F 99.3 2.3E-11 5E-16 89.9 8.5 103 5-146 166-268 (313)
140 KOG0639 Transducin-like enhanc 99.3 1.6E-11 3.5E-16 97.6 7.9 136 2-145 525-669 (705)
141 KOG0302 Ribosome Assembly prot 99.3 2E-11 4.4E-16 93.9 8.1 103 1-141 227-334 (440)
142 KOG1188 WD40 repeat protein [G 99.3 9.1E-11 2E-15 89.3 11.5 136 1-140 43-197 (376)
143 KOG1007 WD repeat protein TSSC 99.3 1.6E-11 3.4E-16 92.0 6.8 100 3-140 188-290 (370)
144 KOG0308 Conserved WD40 repeat- 99.2 5.8E-11 1.3E-15 96.5 9.9 101 1-140 186-286 (735)
145 KOG0268 Sof1-like rRNA process 99.2 8.2E-12 1.8E-16 95.7 4.5 103 1-140 244-346 (433)
146 KOG4378 Nuclear protein COP1 [ 99.2 1E-10 2.2E-15 93.0 9.5 140 1-144 94-244 (673)
147 KOG0973 Histone transcription 99.2 3.6E-10 7.9E-15 95.8 12.3 139 1-142 84-256 (942)
148 KOG0641 WD40 repeat protein [G 99.2 2E-09 4.4E-14 78.6 14.3 145 1-147 104-269 (350)
149 KOG2055 WD40 repeat protein [G 99.2 6.2E-10 1.3E-14 87.6 12.3 144 1-147 228-382 (514)
150 KOG0321 WD40 repeat-containing 99.2 3.5E-10 7.7E-15 91.9 10.8 139 1-141 232-393 (720)
151 KOG2048 WD40 repeat protein [G 99.2 3.7E-10 8.1E-15 92.1 10.8 113 1-146 125-240 (691)
152 KOG0322 G-protein beta subunit 99.2 4.1E-11 8.8E-16 88.8 4.7 99 2-138 221-322 (323)
153 KOG0650 WD40 repeat nucleolar 99.2 1.3E-10 2.8E-15 94.0 7.8 129 5-136 584-732 (733)
154 KOG0649 WD40 repeat protein [G 99.2 3E-10 6.6E-15 83.5 9.1 105 5-146 78-193 (325)
155 KOG0290 Conserved WD40 repeat- 99.1 4.4E-10 9.6E-15 84.3 9.9 138 1-140 166-319 (364)
156 KOG2111 Uncharacterized conser 99.1 6.3E-10 1.4E-14 84.1 10.6 102 5-141 156-258 (346)
157 KOG4328 WD40 protein [Function 99.1 8.6E-10 1.9E-14 86.7 10.5 113 1-146 338-457 (498)
158 KOG1272 WD40-repeat-containing 99.1 8.2E-11 1.8E-15 92.7 4.8 107 1-146 224-330 (545)
159 KOG2445 Nuclear pore complex c 99.1 2.2E-09 4.7E-14 81.1 11.2 105 1-141 28-146 (361)
160 KOG1036 Mitotic spindle checkp 99.1 1.1E-09 2.3E-14 82.5 9.5 135 1-143 28-167 (323)
161 KOG0303 Actin-binding protein 99.1 8.6E-10 1.9E-14 85.6 9.0 70 1-75 147-216 (472)
162 KOG1063 RNA polymerase II elon 99.1 5.3E-10 1.2E-14 91.5 8.3 112 28-141 523-650 (764)
163 KOG1408 WD40 repeat protein [F 99.1 8.1E-10 1.7E-14 91.2 9.0 102 1-140 611-714 (1080)
164 KOG4328 WD40 protein [Function 99.1 6.2E-10 1.3E-14 87.5 7.5 99 3-139 296-399 (498)
165 KOG2106 Uncharacterized conser 99.0 4.2E-09 9E-14 84.0 11.1 98 1-142 383-480 (626)
166 KOG0321 WD40 repeat-containing 99.0 8.3E-10 1.8E-14 89.8 7.2 104 1-141 67-177 (720)
167 KOG0270 WD40 repeat-containing 99.0 5.6E-10 1.2E-14 87.4 5.9 103 1-140 195-318 (463)
168 KOG2055 WD40 repeat protein [G 99.0 2.4E-09 5.3E-14 84.3 9.3 138 1-139 359-512 (514)
169 COG2319 FOG: WD40 repeat [Gene 99.0 8.2E-09 1.8E-13 78.1 11.8 102 5-145 131-235 (466)
170 KOG2919 Guanine nucleotide-bin 99.0 6.9E-09 1.5E-13 79.0 10.7 138 3-142 174-331 (406)
171 KOG2394 WD40 protein DMR-N9 [G 99.0 8.4E-10 1.8E-14 88.4 5.0 77 32-145 292-368 (636)
172 KOG1445 Tumor-specific antigen 98.9 4.1E-09 8.9E-14 86.2 8.6 103 1-140 95-201 (1012)
173 COG2319 FOG: WD40 repeat [Gene 98.9 7E-08 1.5E-12 73.0 14.9 139 2-145 171-320 (466)
174 PF02239 Cytochrom_D1: Cytochr 98.9 2.5E-08 5.4E-13 78.6 12.6 104 3-146 11-115 (369)
175 KOG3914 WD repeat protein WDR4 98.9 3.7E-09 8.1E-14 81.9 7.4 81 29-147 150-231 (390)
176 KOG2394 WD40 protein DMR-N9 [G 98.9 2.7E-09 5.8E-14 85.6 6.3 71 1-75 305-375 (636)
177 KOG2096 WD40 repeat protein [G 98.9 1.6E-08 3.6E-13 76.9 10.1 117 28-146 84-223 (420)
178 PF00400 WD40: WD domain, G-be 98.9 2.3E-09 4.9E-14 57.2 4.0 22 116-137 18-39 (39)
179 KOG1034 Transcriptional repres 98.9 2.5E-08 5.4E-13 76.0 10.6 105 6-147 62-174 (385)
180 KOG1009 Chromatin assembly com 98.9 3.4E-09 7.3E-14 82.4 6.0 107 1-144 80-200 (434)
181 KOG1007 WD repeat protein TSSC 98.9 1.2E-08 2.7E-13 76.7 7.9 100 4-141 140-247 (370)
182 PRK11028 6-phosphogluconolacto 98.9 5.3E-07 1.2E-11 69.5 17.2 138 2-139 142-304 (330)
183 KOG0771 Prolactin regulatory e 98.9 5.3E-09 1.2E-13 81.3 6.0 73 34-144 148-220 (398)
184 KOG0307 Vesicle coat complex C 98.8 1.9E-09 4E-14 92.1 3.4 108 1-144 83-197 (1049)
185 KOG1064 RAVE (regulator of V-A 98.8 1.3E-08 2.8E-13 90.7 7.9 141 2-147 2224-2374(2439)
186 KOG0649 WD40 repeat protein [G 98.8 8.5E-08 1.8E-12 70.8 11.0 133 1-139 129-274 (325)
187 KOG0974 WD-repeat protein WDR6 98.8 4.5E-08 9.7E-13 83.2 10.2 137 1-141 148-290 (967)
188 KOG1963 WD40 repeat protein [G 98.8 4.3E-08 9.3E-13 82.0 10.0 101 6-142 179-284 (792)
189 KOG2106 Uncharacterized conser 98.8 1.3E-07 2.9E-12 75.6 12.0 100 1-138 421-520 (626)
190 KOG1538 Uncharacterized conser 98.8 1.5E-08 3.2E-13 83.5 6.7 70 32-139 14-83 (1081)
191 KOG2445 Nuclear pore complex c 98.8 5.6E-08 1.2E-12 73.6 8.4 117 1-139 187-318 (361)
192 KOG1538 Uncharacterized conser 98.7 8.8E-08 1.9E-12 79.0 10.1 128 5-140 30-163 (1081)
193 KOG2695 WD40 repeat protein [G 98.7 5.2E-08 1.1E-12 74.9 8.0 109 1-146 267-383 (425)
194 KOG1188 WD40 repeat protein [G 98.7 4E-08 8.6E-13 75.1 7.1 103 7-143 142-246 (376)
195 KOG4227 WD40 repeat protein [G 98.7 9.9E-08 2.1E-12 74.5 9.3 107 1-142 71-182 (609)
196 PRK01742 tolB translocation pr 98.7 2.1E-07 4.5E-12 74.6 11.3 93 8-139 228-322 (429)
197 KOG1310 WD40 repeat protein [G 98.7 5.6E-08 1.2E-12 78.5 7.4 104 1-140 65-179 (758)
198 KOG0644 Uncharacterized conser 98.7 6.6E-09 1.4E-13 87.0 2.0 96 1-139 205-300 (1113)
199 KOG1063 RNA polymerase II elon 98.7 3.5E-07 7.5E-12 75.4 11.6 136 1-138 209-390 (764)
200 KOG1587 Cytoplasmic dynein int 98.7 3.4E-07 7.4E-12 75.3 11.6 143 1-144 258-434 (555)
201 PRK11028 6-phosphogluconolacto 98.7 4.6E-07 9.9E-12 69.9 11.7 102 2-140 6-111 (330)
202 PRK02889 tolB translocation pr 98.7 1.4E-06 3E-11 69.9 14.8 132 8-143 220-364 (427)
203 PF11768 DUF3312: Protein of u 98.7 2.2E-07 4.7E-12 75.4 9.9 90 11-139 239-329 (545)
204 KOG1517 Guanine nucleotide bin 98.7 1.8E-07 4E-12 80.2 9.8 105 1-141 1180-1289(1387)
205 KOG1524 WD40 repeat-containing 98.7 9.8E-08 2.1E-12 76.9 7.8 126 1-140 78-217 (737)
206 KOG2139 WD40 repeat protein [G 98.7 1.7E-07 3.7E-12 72.4 8.8 110 1-144 113-231 (445)
207 KOG4547 WD40 repeat-containing 98.7 3.2E-07 6.9E-12 74.1 10.5 107 1-147 73-180 (541)
208 KOG0290 Conserved WD40 repeat- 98.6 3.7E-07 8.1E-12 68.9 10.1 102 4-142 117-230 (364)
209 KOG1523 Actin-related protein 98.6 5E-07 1.1E-11 68.8 10.6 136 1-138 25-175 (361)
210 KOG1240 Protein kinase contain 98.6 6.9E-07 1.5E-11 77.7 12.3 144 1-145 1064-1231(1431)
211 KOG2919 Guanine nucleotide-bin 98.6 3.7E-07 8E-12 69.7 9.5 135 2-140 127-282 (406)
212 PRK01742 tolB translocation pr 98.6 3.9E-07 8.4E-12 73.1 10.1 93 7-142 183-283 (429)
213 KOG1517 Guanine nucleotide bin 98.6 1.6E-07 3.5E-12 80.6 7.0 108 1-142 1272-1384(1387)
214 PF00400 WD40: WD domain, G-be 98.6 2.6E-07 5.7E-12 49.0 5.4 34 23-57 5-38 (39)
215 PF02239 Cytochrom_D1: Cytochr 98.6 1.2E-05 2.7E-10 63.5 17.0 139 2-145 52-208 (369)
216 KOG2111 Uncharacterized conser 98.6 1.5E-06 3.3E-11 66.1 11.1 58 1-59 196-255 (346)
217 KOG1272 WD40-repeat-containing 98.5 2.1E-07 4.5E-12 73.8 6.1 64 3-70 268-331 (545)
218 KOG2321 WD40 repeat protein [G 98.5 7.2E-07 1.6E-11 72.4 9.2 116 1-144 148-263 (703)
219 KOG1310 WD40 repeat protein [G 98.5 3.4E-07 7.4E-12 74.1 7.0 75 29-140 49-126 (758)
220 KOG0322 G-protein beta subunit 98.5 4.9E-07 1.1E-11 67.4 7.3 110 1-144 168-286 (323)
221 PF08662 eIF2A: Eukaryotic tra 98.5 2E-06 4.3E-11 62.1 9.9 84 2-92 77-163 (194)
222 KOG1524 WD40 repeat-containing 98.5 2.1E-06 4.6E-11 69.4 10.5 90 31-135 187-282 (737)
223 KOG0644 Uncharacterized conser 98.4 2.7E-07 5.9E-12 77.6 5.1 54 1-60 247-300 (1113)
224 KOG1587 Cytoplasmic dynein int 98.4 9.1E-07 2E-11 72.9 8.0 98 5-140 417-517 (555)
225 KOG0642 Cell-cycle nuclear pro 98.4 1.3E-06 2.9E-11 70.5 8.7 76 33-145 492-567 (577)
226 KOG2139 WD40 repeat protein [G 98.4 1.9E-06 4.1E-11 66.7 8.9 100 1-138 156-267 (445)
227 KOG2315 Predicted translation 98.4 7.9E-06 1.7E-10 66.1 12.6 130 8-145 251-395 (566)
228 TIGR02800 propeller_TolB tol-p 98.4 1.4E-05 3E-10 63.3 13.9 131 8-142 214-357 (417)
229 KOG2321 WD40 repeat protein [G 98.4 9.5E-07 2.1E-11 71.8 6.7 106 1-144 190-307 (703)
230 COG4946 Uncharacterized protei 98.4 1E-05 2.3E-10 64.8 12.2 104 1-144 374-482 (668)
231 KOG4497 Uncharacterized conser 98.4 8.2E-06 1.8E-10 62.8 11.1 140 3-144 66-245 (447)
232 PRK05137 tolB translocation pr 98.3 7.5E-06 1.6E-10 65.7 11.1 97 7-142 225-325 (435)
233 PRK04922 tolB translocation pr 98.3 1.2E-05 2.7E-10 64.5 12.3 101 4-143 266-372 (433)
234 PRK05137 tolB translocation pr 98.3 1.4E-05 3.1E-10 64.1 12.5 95 8-143 182-282 (435)
235 PRK03629 tolB translocation pr 98.3 1E-05 2.2E-10 65.0 11.4 57 7-66 222-279 (429)
236 KOG4547 WD40 repeat-containing 98.3 4.4E-06 9.6E-11 67.7 9.2 69 1-75 117-185 (541)
237 PRK03629 tolB translocation pr 98.3 1.6E-05 3.5E-10 63.8 12.1 96 9-143 268-367 (429)
238 KOG1064 RAVE (regulator of V-A 98.3 6.5E-07 1.4E-11 80.3 3.7 95 5-147 2312-2406(2439)
239 KOG0974 WD-repeat protein WDR6 98.2 8E-06 1.7E-10 69.9 9.3 106 1-144 102-210 (967)
240 KOG1963 WD40 repeat protein [G 98.2 8.5E-06 1.9E-10 68.6 8.9 102 1-140 220-323 (792)
241 KOG3881 Uncharacterized conser 98.2 1.4E-05 3E-10 62.3 8.9 108 2-146 165-284 (412)
242 KOG4714 Nucleoporin [Nuclear s 98.2 2.3E-06 4.9E-11 63.8 4.3 72 32-140 181-255 (319)
243 KOG0280 Uncharacterized conser 98.2 1.3E-05 2.7E-10 60.7 8.3 108 2-145 137-248 (339)
244 PRK04922 tolB translocation pr 98.2 1.6E-05 3.4E-10 63.9 9.5 95 8-143 184-284 (433)
245 KOG0650 WD40 repeat nucleolar 98.2 1.1E-05 2.4E-10 66.0 8.4 42 28-71 398-439 (733)
246 PF13360 PQQ_2: PQQ-like domai 98.1 0.00048 1E-08 50.2 14.7 142 2-146 80-237 (238)
247 KOG4532 WD40-like repeat conta 98.0 0.00012 2.6E-09 55.1 11.1 104 2-141 132-235 (344)
248 TIGR02658 TTQ_MADH_Hv methylam 98.0 0.00014 3E-09 57.2 12.0 103 8-146 27-143 (352)
249 KOG1334 WD40 repeat protein [G 98.0 6.5E-06 1.4E-10 65.8 4.6 111 1-145 297-430 (559)
250 PRK04792 tolB translocation pr 98.0 0.00012 2.7E-09 59.1 12.1 95 9-142 243-341 (448)
251 KOG4227 WD40 repeat protein [G 98.0 3.9E-05 8.4E-10 60.3 8.5 106 1-141 120-227 (609)
252 PRK01029 tolB translocation pr 98.0 0.00012 2.7E-09 58.8 11.5 76 33-143 283-363 (428)
253 TIGR02800 propeller_TolB tol-p 98.0 0.00015 3.2E-09 57.5 11.8 96 7-143 169-270 (417)
254 PRK00178 tolB translocation pr 98.0 9.6E-05 2.1E-09 59.1 10.7 94 9-143 180-279 (430)
255 KOG4714 Nucleoporin [Nuclear s 98.0 2.6E-05 5.7E-10 58.2 6.7 60 1-63 195-255 (319)
256 PRK00178 tolB translocation pr 98.0 0.00017 3.6E-09 57.7 11.9 97 8-143 223-323 (430)
257 KOG0280 Uncharacterized conser 98.0 0.00011 2.3E-09 55.8 9.8 64 1-67 181-247 (339)
258 PLN02919 haloacid dehalogenase 97.9 0.00017 3.7E-09 64.0 12.1 117 3-143 757-892 (1057)
259 KOG1523 Actin-related protein 97.9 4E-05 8.7E-10 58.6 6.9 73 31-138 11-84 (361)
260 TIGR02658 TTQ_MADH_Hv methylam 97.9 0.00033 7.2E-09 55.0 12.2 102 6-146 213-337 (352)
261 PRK02889 tolB translocation pr 97.9 0.00013 2.8E-09 58.6 10.1 90 8-138 176-269 (427)
262 PRK04792 tolB translocation pr 97.9 0.00023 5E-09 57.6 11.6 96 9-143 199-298 (448)
263 KOG2066 Vacuolar assembly/sort 97.9 0.00012 2.6E-09 61.8 9.9 103 1-145 86-193 (846)
264 PF11768 DUF3312: Protein of u 97.9 4.3E-05 9.4E-10 62.3 6.7 56 1-62 274-329 (545)
265 COG5354 Uncharacterized protei 97.9 0.00039 8.4E-09 56.2 11.8 128 7-140 254-396 (561)
266 smart00320 WD40 WD40 repeats. 97.8 4.3E-05 9.4E-10 38.2 4.3 23 115-137 18-40 (40)
267 KOG1354 Serine/threonine prote 97.8 9.1E-05 2E-09 57.4 7.4 117 2-141 230-361 (433)
268 KOG0309 Conserved WD40 repeat- 97.8 2.8E-05 6.1E-10 65.2 5.0 102 1-140 130-233 (1081)
269 KOG1240 Protein kinase contain 97.8 0.00011 2.5E-09 64.4 8.5 66 1-69 1166-1232(1431)
270 KOG4640 Anaphase-promoting com 97.7 0.00012 2.7E-09 60.3 7.2 77 32-146 22-99 (665)
271 KOG1354 Serine/threonine prote 97.7 0.0001 2.2E-09 57.1 6.3 109 5-146 182-309 (433)
272 PF13360 PQQ_2: PQQ-like domai 97.7 0.0013 2.8E-08 47.9 11.9 107 2-146 40-147 (238)
273 PF10282 Lactonase: Lactonase, 97.7 0.0015 3.3E-08 50.9 12.9 107 3-144 209-329 (345)
274 PRK01029 tolB translocation pr 97.7 0.0013 2.8E-08 53.0 12.1 74 32-143 328-407 (428)
275 KOG1645 RING-finger-containing 97.6 0.00022 4.9E-09 56.1 6.7 73 31-141 194-268 (463)
276 TIGR03300 assembly_YfgL outer 97.6 0.0018 3.8E-08 50.9 11.5 101 2-146 245-345 (377)
277 PLN02919 haloacid dehalogenase 97.6 0.0021 4.5E-08 57.3 13.0 125 2-144 699-838 (1057)
278 KOG1334 WD40 repeat protein [G 97.6 0.00016 3.5E-09 58.1 5.5 105 1-141 157-265 (559)
279 KOG3621 WD40 repeat-containing 97.5 0.00031 6.8E-09 58.6 7.2 108 1-140 48-155 (726)
280 KOG1409 Uncharacterized conser 97.5 0.00083 1.8E-08 52.1 8.8 85 21-142 189-273 (404)
281 KOG0882 Cyclophilin-related pe 97.4 0.00082 1.8E-08 53.8 7.8 110 5-146 119-238 (558)
282 PF04762 IKI3: IKI3 family; I 97.4 0.0036 7.9E-08 55.0 12.6 132 1-144 90-249 (928)
283 KOG4190 Uncharacterized conser 97.4 0.00038 8.2E-09 57.2 6.0 112 3-147 799-914 (1034)
284 KOG4497 Uncharacterized conser 97.4 0.00066 1.4E-08 52.5 6.9 106 35-144 13-127 (447)
285 smart00320 WD40 WD40 repeats. 97.4 0.00048 1E-08 34.1 4.2 29 29-57 11-39 (40)
286 COG5170 CDC55 Serine/threonine 97.3 0.00055 1.2E-08 52.7 5.6 115 4-146 189-317 (460)
287 TIGR03300 assembly_YfgL outer 97.3 0.0047 1E-07 48.5 11.1 62 2-70 69-131 (377)
288 KOG2444 WD40 repeat protein [G 97.3 0.00095 2.1E-08 49.1 6.2 59 1-62 73-132 (238)
289 KOG2079 Vacuolar assembly/sort 97.3 0.00036 7.8E-09 60.7 4.6 105 6-146 63-167 (1206)
290 PRK04043 tolB translocation pr 97.3 0.0088 1.9E-07 48.2 12.3 56 7-65 212-268 (419)
291 KOG2079 Vacuolar assembly/sort 97.3 0.0011 2.4E-08 57.9 7.3 71 1-74 102-172 (1206)
292 PF07433 DUF1513: Protein of u 97.3 0.0095 2.1E-07 45.9 11.7 33 114-146 221-254 (305)
293 COG5354 Uncharacterized protei 97.2 0.0016 3.5E-08 52.7 7.6 100 7-147 10-124 (561)
294 KOG1275 PAB-dependent poly(A) 97.2 0.0019 4.2E-08 55.6 8.0 100 2-144 151-259 (1118)
295 KOG2695 WD40 repeat protein [G 97.2 0.0009 1.9E-08 52.0 5.2 98 4-143 230-333 (425)
296 PF14783 BBS2_Mid: Ciliary BBS 97.1 0.023 5E-07 37.4 11.0 53 1-61 18-70 (111)
297 PF12894 Apc4_WD40: Anaphase-p 97.1 0.0018 3.9E-08 36.0 5.0 29 31-61 12-40 (47)
298 KOG4640 Anaphase-promoting com 97.1 0.0021 4.6E-08 53.3 7.1 64 1-69 35-99 (665)
299 KOG2066 Vacuolar assembly/sort 97.0 0.0035 7.7E-08 53.2 8.0 49 1-59 52-100 (846)
300 PF10282 Lactonase: Lactonase, 97.0 0.016 3.4E-07 45.3 11.3 107 1-140 2-118 (345)
301 KOG4532 WD40-like repeat conta 97.0 0.013 2.7E-07 44.5 10.0 60 2-63 174-234 (344)
302 PF15492 Nbas_N: Neuroblastoma 97.0 0.044 9.6E-07 41.6 12.7 37 110-146 230-266 (282)
303 KOG1409 Uncharacterized conser 96.9 0.042 9.1E-07 42.9 12.3 140 1-142 39-230 (404)
304 KOG2314 Translation initiation 96.9 0.0021 4.6E-08 52.7 5.4 78 30-147 210-298 (698)
305 KOG3914 WD repeat protein WDR4 96.9 0.01 2.2E-07 46.8 8.9 105 34-138 66-180 (390)
306 KOG4190 Uncharacterized conser 96.9 0.00081 1.8E-08 55.3 3.0 79 28-143 733-816 (1034)
307 COG5170 CDC55 Serine/threonine 96.9 0.0019 4E-08 49.8 4.6 80 29-139 171-252 (460)
308 PF08450 SGL: SMP-30/Gluconola 96.8 0.059 1.3E-06 39.7 12.0 94 7-139 59-164 (246)
309 PF15492 Nbas_N: Neuroblastoma 96.7 0.014 3E-07 44.3 8.4 26 115-140 49-74 (282)
310 KOG2041 WD40 repeat protein [G 96.7 0.0064 1.4E-07 51.5 6.8 102 1-137 29-143 (1189)
311 PRK04043 tolB translocation pr 96.7 0.03 6.6E-07 45.1 10.5 57 7-66 256-313 (419)
312 PF12894 Apc4_WD40: Anaphase-p 96.6 0.0044 9.6E-08 34.4 3.8 30 115-145 17-46 (47)
313 KOG2314 Translation initiation 96.6 0.013 2.9E-07 48.2 7.7 94 9-141 232-336 (698)
314 PF07433 DUF1513: Protein of u 96.5 0.029 6.3E-07 43.3 9.1 80 34-147 8-94 (305)
315 PF14783 BBS2_Mid: Ciliary BBS 96.5 0.043 9.3E-07 36.1 8.6 35 33-71 2-40 (111)
316 COG2706 3-carboxymuconate cycl 96.5 0.064 1.4E-06 41.8 10.6 101 7-140 15-120 (346)
317 PF08553 VID27: VID27 cytoplas 96.4 0.028 6E-07 48.6 9.3 98 2-139 546-647 (794)
318 PF14655 RAB3GAP2_N: Rab3 GTPa 96.4 0.033 7E-07 44.9 8.9 45 32-78 309-353 (415)
319 PRK02888 nitrous-oxide reducta 96.4 0.032 7E-07 46.9 9.1 106 7-140 295-405 (635)
320 KOG1275 PAB-dependent poly(A) 96.3 0.034 7.4E-07 48.3 9.1 131 1-137 190-340 (1118)
321 PRK11138 outer membrane biogen 96.3 0.058 1.3E-06 42.8 10.1 60 2-69 260-319 (394)
322 KOG2041 WD40 repeat protein [G 96.2 0.015 3.4E-07 49.4 6.3 89 27-141 11-103 (1189)
323 COG0823 TolB Periplasmic compo 96.2 0.042 9.1E-07 44.4 8.7 55 8-65 218-273 (425)
324 PRK02888 nitrous-oxide reducta 96.1 0.1 2.2E-06 44.0 10.7 30 113-142 324-354 (635)
325 KOG3617 WD40 and TPR repeat-co 96.1 0.051 1.1E-06 47.2 8.8 129 1-139 74-220 (1416)
326 PRK11138 outer membrane biogen 96.0 0.19 4.1E-06 39.8 11.6 67 2-71 73-147 (394)
327 KOG1920 IkappaB kinase complex 96.0 0.095 2.1E-06 46.8 10.4 53 1-56 83-135 (1265)
328 PF08450 SGL: SMP-30/Gluconola 96.0 0.1 2.2E-06 38.5 9.4 80 33-145 136-218 (246)
329 PF03178 CPSF_A: CPSF A subuni 95.8 0.36 7.8E-06 37.2 12.1 101 3-139 102-202 (321)
330 COG3386 Gluconolactonase [Carb 95.8 0.14 3E-06 39.7 9.7 29 33-61 165-194 (307)
331 COG2706 3-carboxymuconate cycl 95.8 0.7 1.5E-05 36.2 13.2 101 6-139 211-321 (346)
332 KOG3617 WD40 and TPR repeat-co 95.8 0.013 2.8E-07 50.7 4.1 72 32-140 61-132 (1416)
333 KOG4649 PQQ (pyrrolo-quinoline 95.8 0.25 5.4E-06 37.6 10.4 105 1-146 26-130 (354)
334 cd00216 PQQ_DH Dehydrogenases 95.7 0.29 6.3E-06 40.2 11.8 68 2-72 114-193 (488)
335 PF04053 Coatomer_WDAD: Coatom 95.7 0.36 7.8E-06 39.3 12.1 129 8-146 2-141 (443)
336 KOG1832 HIV-1 Vpr-binding prot 95.7 0.014 3.1E-07 50.6 4.2 43 32-76 1103-1145(1516)
337 KOG0309 Conserved WD40 repeat- 95.7 0.041 8.8E-07 47.0 6.7 107 3-145 41-152 (1081)
338 PF08553 VID27: VID27 cytoplas 95.7 0.024 5.3E-07 48.9 5.5 56 1-61 591-646 (794)
339 cd00216 PQQ_DH Dehydrogenases 95.6 0.17 3.6E-06 41.6 10.0 27 120-146 405-431 (488)
340 KOG1912 WD40 repeat protein [G 95.5 0.13 2.9E-06 44.2 9.0 104 5-147 32-151 (1062)
341 KOG1832 HIV-1 Vpr-binding prot 95.2 0.012 2.6E-07 51.2 2.1 66 1-70 1116-1184(1516)
342 PF06433 Me-amine-dh_H: Methyl 95.2 0.25 5.4E-06 38.8 9.1 32 115-146 294-327 (342)
343 KOG2114 Vacuolar assembly/sort 95.1 0.47 1E-05 41.2 11.1 60 1-62 140-201 (933)
344 KOG3621 WD40 repeat-containing 95.0 0.065 1.4E-06 45.3 5.7 61 1-61 91-155 (726)
345 PF11715 Nup160: Nucleoporin N 95.0 0.14 3E-06 42.5 7.7 27 120-146 229-255 (547)
346 KOG1912 WD40 repeat protein [G 94.9 0.033 7.2E-07 47.7 3.9 108 1-144 440-556 (1062)
347 KOG2395 Protein involved in va 94.9 0.24 5.2E-06 41.0 8.5 57 2-61 398-458 (644)
348 PF10313 DUF2415: Uncharacteri 94.6 0.13 2.8E-06 27.9 4.5 30 32-63 2-34 (43)
349 PF00930 DPPIV_N: Dipeptidyl p 94.4 0.19 4.1E-06 39.3 7.0 53 6-64 21-73 (353)
350 COG4946 Uncharacterized protei 94.4 0.82 1.8E-05 37.5 10.4 94 8-143 341-435 (668)
351 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.4 1.3 2.7E-05 37.0 12.0 65 2-71 73-147 (527)
352 COG3391 Uncharacterized conser 94.4 1.5 3.3E-05 34.8 12.1 98 6-144 94-195 (381)
353 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.2 1.1 2.3E-05 37.4 11.1 28 120-147 471-498 (527)
354 KOG2444 WD40 repeat protein [G 94.1 0.23 5E-06 36.8 6.2 52 5-61 37-89 (238)
355 PF08596 Lgl_C: Lethal giant l 93.9 2.7 6E-05 33.7 12.8 145 1-145 100-296 (395)
356 PF10168 Nup88: Nuclear pore c 93.8 3 6.5E-05 36.2 13.2 93 30-141 84-181 (717)
357 KOG1008 Uncharacterized conser 93.6 0.015 3.3E-07 48.6 -0.6 102 1-139 169-275 (783)
358 KOG1008 Uncharacterized conser 93.4 0.034 7.4E-07 46.6 1.0 103 1-139 73-184 (783)
359 PF07569 Hira: TUP1-like enhan 93.1 0.5 1.1E-05 34.8 6.8 61 1-62 25-97 (219)
360 PF05096 Glu_cyclase_2: Glutam 93.1 3 6.5E-05 31.7 11.2 59 7-72 109-167 (264)
361 PF02897 Peptidase_S9_N: Proly 93.1 1.1 2.3E-05 35.7 9.1 33 33-67 126-163 (414)
362 KOG4460 Nuclear pore complex, 92.9 3.4 7.3E-05 34.6 11.6 96 31-145 104-204 (741)
363 PF04762 IKI3: IKI3 family; I 92.8 0.77 1.7E-05 40.8 8.5 72 32-137 77-148 (928)
364 KOG4649 PQQ (pyrrolo-quinoline 92.8 1.8 3.8E-05 33.1 9.2 67 1-72 66-133 (354)
365 KOG2114 Vacuolar assembly/sort 92.4 2.1 4.7E-05 37.4 10.3 53 9-61 93-156 (933)
366 KOG2315 Predicted translation 92.4 1.7 3.8E-05 36.0 9.4 78 6-90 292-372 (566)
367 KOG1916 Nuclear protein, conta 92.4 0.12 2.6E-06 45.2 3.0 103 8-138 153-264 (1283)
368 PF12234 Rav1p_C: RAVE protein 92.3 3.2 6.9E-05 35.4 11.1 51 5-56 48-100 (631)
369 PF04053 Coatomer_WDAD: Coatom 92.1 5.8 0.00013 32.4 13.1 54 4-62 122-175 (443)
370 TIGR03074 PQQ_membr_DH membran 91.8 3.7 8.1E-05 35.9 11.2 68 1-71 197-287 (764)
371 COG3386 Gluconolactonase [Carb 91.7 3.2 6.9E-05 32.2 9.8 27 113-139 166-193 (307)
372 COG3391 Uncharacterized conser 91.6 4.4 9.5E-05 32.2 10.8 52 7-63 139-191 (381)
373 KOG3616 Selective LIM binding 91.5 0.48 1E-05 41.1 5.5 37 32-68 16-52 (1636)
374 PF00930 DPPIV_N: Dipeptidyl p 91.4 0.72 1.6E-05 36.1 6.2 27 116-143 49-75 (353)
375 KOG2395 Protein involved in va 91.2 0.44 9.5E-06 39.5 4.8 57 1-62 444-500 (644)
376 KOG1645 RING-finger-containing 91.1 0.97 2.1E-05 36.2 6.5 58 1-63 209-267 (463)
377 smart00564 PQQ beta-propeller 91.0 0.58 1.3E-05 23.0 3.6 25 123-147 8-32 (33)
378 PF06433 Me-amine-dh_H: Methyl 90.7 0.82 1.8E-05 35.9 5.8 58 9-71 270-329 (342)
379 KOG0882 Cyclophilin-related pe 90.1 1.6 3.4E-05 35.6 6.9 137 3-146 161-312 (558)
380 PF07676 PD40: WD40-like Beta 89.9 0.79 1.7E-05 23.6 3.7 22 115-136 14-38 (39)
381 PF00780 CNH: CNH domain; Int 89.8 4.2 9.1E-05 30.2 8.9 55 1-60 10-64 (275)
382 COG3490 Uncharacterized protei 89.4 3.4 7.3E-05 32.1 7.9 62 11-74 94-161 (366)
383 PF14870 PSII_BNR: Photosynthe 89.4 6.5 0.00014 30.5 9.7 25 31-56 187-211 (302)
384 PF14781 BBS2_N: Ciliary BBSom 89.3 5.2 0.00011 27.3 10.1 61 1-66 13-85 (136)
385 PF10313 DUF2415: Uncharacteri 89.3 1.6 3.4E-05 23.7 4.5 26 115-140 6-34 (43)
386 COG0823 TolB Periplasmic compo 88.7 3.7 8.1E-05 33.3 8.3 51 9-62 263-314 (425)
387 KOG1920 IkappaB kinase complex 88.7 2.5 5.4E-05 38.3 7.6 67 32-136 70-136 (1265)
388 PF08728 CRT10: CRT10; InterP 88.6 6.2 0.00013 34.2 9.7 60 1-62 117-197 (717)
389 TIGR02604 Piru_Ver_Nterm putat 88.5 4.3 9.3E-05 32.0 8.5 18 32-49 125-142 (367)
390 COG1520 FOG: WD40-like repeat 88.4 9.9 0.00022 29.8 10.5 69 3-74 73-141 (370)
391 TIGR02276 beta_rpt_yvtn 40-res 87.9 1.1 2.4E-05 23.2 3.4 28 119-146 1-29 (42)
392 COG3490 Uncharacterized protei 87.6 6 0.00013 30.7 8.2 26 116-141 120-150 (366)
393 KOG1897 Damage-specific DNA bi 86.9 16 0.00034 32.9 11.2 104 2-138 503-612 (1096)
394 PF02897 Peptidase_S9_N: Proly 86.5 5.9 0.00013 31.5 8.3 45 5-52 147-191 (414)
395 PF14269 Arylsulfotran_2: Aryl 86.4 4.3 9.4E-05 31.3 7.2 40 32-73 145-184 (299)
396 PF01011 PQQ: PQQ enzyme repea 86.3 1.5 3.3E-05 22.6 3.3 24 124-147 3-26 (38)
397 PF04841 Vps16_N: Vps16, N-ter 86.2 16 0.00035 29.4 14.8 31 31-61 217-247 (410)
398 PF12657 TFIIIC_delta: Transcr 86.2 8.9 0.00019 26.9 8.2 30 111-140 87-122 (173)
399 PF08596 Lgl_C: Lethal giant l 85.2 18 0.00039 29.1 11.9 112 32-146 3-122 (395)
400 KOG2377 Uncharacterized conser 84.4 12 0.00026 31.0 8.9 33 29-61 65-97 (657)
401 PF04841 Vps16_N: Vps16, N-ter 84.4 20 0.00043 28.9 12.3 33 112-144 219-251 (410)
402 KOG4499 Ca2+-binding protein R 84.2 4.3 9.4E-05 30.6 5.9 32 116-147 218-249 (310)
403 PF14761 HPS3_N: Hermansky-Pud 83.0 4.2 9E-05 30.0 5.4 45 2-48 32-77 (215)
404 PF06977 SdiA-regulated: SdiA- 82.9 18 0.00038 27.2 9.0 55 7-61 85-148 (248)
405 PF11715 Nup160: Nucleoporin N 82.8 7.9 0.00017 32.1 7.7 37 32-70 216-256 (547)
406 PF03178 CPSF_A: CPSF A subuni 82.0 20 0.00043 27.5 9.3 53 8-63 62-118 (321)
407 PF07569 Hira: TUP1-like enhan 81.8 12 0.00027 27.4 7.6 27 38-66 18-44 (219)
408 PF06977 SdiA-regulated: SdiA- 81.7 12 0.00027 28.1 7.7 37 32-71 23-60 (248)
409 PF03088 Str_synth: Strictosid 81.5 3.4 7.4E-05 26.0 4.0 42 4-48 33-74 (89)
410 PRK13616 lipoprotein LpqB; Pro 81.1 7.1 0.00015 33.1 6.8 19 33-51 399-417 (591)
411 TIGR03074 PQQ_membr_DH membran 81.1 38 0.00083 29.8 13.5 27 120-146 455-484 (764)
412 PRK10115 protease 2; Provision 80.1 10 0.00022 32.8 7.5 33 31-65 127-164 (686)
413 PF05694 SBP56: 56kDa selenium 79.6 33 0.00072 28.2 10.2 50 7-57 221-274 (461)
414 PRK13616 lipoprotein LpqB; Pro 78.8 16 0.00035 31.0 8.3 30 32-61 351-386 (591)
415 PF00780 CNH: CNH domain; Int 77.1 27 0.00059 25.8 13.6 56 4-66 110-169 (275)
416 PF01436 NHL: NHL repeat; Int 76.8 6.7 0.00015 18.7 3.8 24 33-56 4-27 (28)
417 PF01731 Arylesterase: Arylest 76.0 13 0.00028 23.2 5.3 28 113-140 57-85 (86)
418 COG3292 Predicted periplasmic 75.0 13 0.00028 31.5 6.5 60 4-67 392-451 (671)
419 PF06739 SBBP: Beta-propeller 74.3 7 0.00015 20.3 3.3 21 32-52 14-34 (38)
420 PF03088 Str_synth: Strictosid 73.5 20 0.00043 22.6 5.7 14 114-127 61-74 (89)
421 PF11635 Med16: Mediator compl 73.1 39 0.00085 29.6 9.3 83 33-134 262-345 (753)
422 PF12768 Rax2: Cortical protei 72.7 18 0.0004 27.7 6.5 52 6-59 14-71 (281)
423 PF14655 RAB3GAP2_N: Rab3 GTPa 72.7 5.9 0.00013 32.1 4.0 34 114-147 312-345 (415)
424 PF14870 PSII_BNR: Photosynthe 71.5 45 0.00099 25.9 10.0 29 31-61 145-173 (302)
425 PF14583 Pectate_lyase22: Olig 70.9 27 0.00058 28.2 7.2 31 37-67 42-73 (386)
426 PF01731 Arylesterase: Arylest 70.7 20 0.00042 22.4 5.2 45 7-56 35-80 (86)
427 KOG3630 Nuclear pore complex, 69.4 5 0.00011 36.5 3.1 94 7-137 123-226 (1405)
428 KOG3630 Nuclear pore complex, 68.9 9.9 0.00021 34.7 4.7 56 2-61 172-227 (1405)
429 PF10647 Gmad1: Lipoprotein Lp 68.1 48 0.001 24.7 10.8 25 32-56 113-140 (253)
430 PF10584 Proteasome_A_N: Prote 65.3 1.6 3.4E-05 20.4 -0.4 9 116-124 7-15 (23)
431 KOG4499 Ca2+-binding protein R 65.2 28 0.00061 26.4 5.9 37 35-73 216-252 (310)
432 PHA02713 hypothetical protein; 64.4 33 0.00071 28.9 6.9 24 120-143 512-537 (557)
433 COG5167 VID27 Protein involved 64.0 19 0.0004 30.4 5.1 57 1-62 576-632 (776)
434 PF14583 Pectate_lyase22: Olig 63.7 16 0.00034 29.4 4.7 13 59-71 15-27 (386)
435 PF13570 PQQ_3: PQQ-like domai 63.5 14 0.0003 19.0 3.1 21 120-140 20-40 (40)
436 COG4590 ABC-type uncharacteriz 62.9 47 0.001 27.7 7.2 26 116-142 364-389 (733)
437 PF07995 GSDH: Glucose / Sorbo 62.4 72 0.0016 24.8 9.8 47 2-49 16-71 (331)
438 PF15390 DUF4613: Domain of un 61.9 57 0.0012 28.0 7.6 26 116-141 162-188 (671)
439 KOG1916 Nuclear protein, conta 61.8 20 0.00043 32.2 5.2 21 38-58 243-263 (1283)
440 PF12341 DUF3639: Protein of u 59.9 19 0.00042 17.4 3.7 23 32-56 3-25 (27)
441 PF05096 Glu_cyclase_2: Glutam 57.8 83 0.0018 24.0 11.8 95 9-145 69-163 (264)
442 PF07995 GSDH: Glucose / Sorbo 57.7 28 0.00061 27.1 5.1 49 7-55 280-330 (331)
443 TIGR02608 delta_60_rpt delta-6 57.2 18 0.00038 20.6 2.9 18 33-50 3-20 (55)
444 PF05694 SBP56: 56kDa selenium 56.9 30 0.00065 28.5 5.1 47 3-49 329-392 (461)
445 PF08801 Nucleoporin_N: Nup133 56.6 1E+02 0.0022 24.7 9.6 28 113-140 193-220 (422)
446 PF14779 BBS1: Ciliary BBSome 56.6 58 0.0013 24.7 6.4 53 1-56 198-254 (257)
447 COG5167 VID27 Protein involved 55.9 45 0.00097 28.3 6.0 18 42-61 573-590 (776)
448 PF14157 YmzC: YmzC-like prote 55.7 37 0.00079 19.9 4.1 25 42-66 29-53 (63)
449 TIGR03118 PEPCTERM_chp_1 conse 55.1 83 0.0018 24.8 7.0 28 33-60 25-52 (336)
450 COG2133 Glucose/sorbosone dehy 53.9 45 0.00097 27.0 5.7 20 32-51 178-197 (399)
451 PRK10115 protease 2; Provision 53.6 1.5E+02 0.0033 25.7 10.3 44 4-51 149-192 (686)
452 KOG4441 Proteins containing BT 52.5 1.5E+02 0.0032 25.2 11.1 53 8-63 301-358 (571)
453 PF13418 Kelch_4: Galactose ox 51.3 20 0.00044 19.0 2.5 26 118-143 10-41 (49)
454 PF10433 MMS1_N: Mono-function 50.6 94 0.002 25.6 7.3 26 115-140 49-74 (504)
455 cd03444 Thioesterase_II_repeat 50.1 43 0.00094 21.3 4.3 17 116-132 87-103 (104)
456 KOG2247 WD40 repeat-containing 49.3 5.3 0.00011 33.2 -0.1 56 4-63 93-148 (615)
457 PHA02713 hypothetical protein; 49.2 1.6E+02 0.0035 24.8 8.8 14 40-53 350-363 (557)
458 PF14727 PHTB1_N: PTHB1 N-term 48.1 1.5E+02 0.0033 24.2 12.2 52 1-56 40-93 (418)
459 PF10647 Gmad1: Lipoprotein Lp 46.9 1.2E+02 0.0026 22.6 8.8 18 32-49 25-42 (253)
460 TIGR02604 Piru_Ver_Nterm putat 46.1 1.5E+02 0.0031 23.4 8.1 17 32-48 15-31 (367)
461 PHA03098 kelch-like protein; P 45.8 1.7E+02 0.0037 24.1 11.8 24 120-143 487-515 (534)
462 PHA02790 Kelch-like protein; P 45.3 1.7E+02 0.0037 24.0 8.6 24 40-63 317-340 (480)
463 PF14761 HPS3_N: Hermansky-Pud 44.9 97 0.0021 22.9 5.8 37 34-71 21-57 (215)
464 PF12234 Rav1p_C: RAVE protein 44.9 2.1E+02 0.0045 24.8 9.9 22 116-137 81-102 (631)
465 KOG3616 Selective LIM binding 44.2 32 0.00069 30.6 3.7 27 116-142 21-47 (1636)
466 PF13449 Phytase-like: Esteras 44.1 84 0.0018 24.3 5.8 35 33-70 87-127 (326)
467 KOG3611 Semaphorins [Signal tr 44.0 1.2E+02 0.0026 26.7 7.2 56 1-56 428-489 (737)
468 PF13449 Phytase-like: Esteras 43.0 1.6E+02 0.0034 22.8 8.2 22 32-53 21-42 (326)
469 KOG1898 Splicing factor 3b, su 42.6 1.7E+02 0.0036 27.1 7.7 107 9-147 854-970 (1205)
470 PF11635 Med16: Mediator compl 42.6 59 0.0013 28.5 5.2 55 1-55 274-345 (753)
471 PLN00033 photosystem II stabil 42.2 1.8E+02 0.004 23.5 10.9 24 31-55 281-304 (398)
472 PF10214 Rrn6: RNA polymerase 42.1 32 0.0007 30.1 3.5 28 111-138 147-175 (765)
473 PF15390 DUF4613: Domain of un 41.8 1.6E+02 0.0034 25.5 7.2 60 35-94 343-406 (671)
474 COG5308 NUP170 Nuclear pore co 40.9 1.1E+02 0.0024 27.8 6.4 19 118-138 190-208 (1263)
475 KOG2727 Rab3 GTPase-activating 40.1 29 0.00064 31.2 2.9 43 34-78 325-367 (1244)
476 KOG1897 Damage-specific DNA bi 39.1 3.1E+02 0.0068 25.2 11.1 61 2-64 842-902 (1096)
477 COG2828 Uncharacterized protei 38.8 32 0.00069 27.1 2.6 30 115-144 89-132 (378)
478 PHA03098 kelch-like protein; P 38.1 2.3E+02 0.005 23.4 11.8 26 118-143 435-468 (534)
479 COG3823 Glutamine cyclotransfe 37.7 1.7E+02 0.0038 21.9 6.2 59 8-70 68-127 (262)
480 PRK13684 Ycf48-like protein; P 37.5 2E+02 0.0043 22.4 10.1 24 31-55 173-196 (334)
481 TIGR03118 PEPCTERM_chp_1 conse 37.4 2.1E+02 0.0045 22.7 9.8 64 4-72 218-289 (336)
482 smart00036 CNH Domain found in 36.9 1.7E+02 0.0037 22.4 6.5 55 1-59 16-72 (302)
483 PHA02790 Kelch-like protein; P 36.2 2.4E+02 0.0053 23.1 8.6 24 120-143 446-474 (480)
484 TIGR03054 photo_alph_chp1 puta 35.7 1.4E+02 0.0031 20.3 6.3 62 3-67 46-118 (135)
485 KOG4659 Uncharacterized conser 34.7 90 0.0019 29.6 5.0 22 33-54 595-616 (1899)
486 COG3204 Uncharacterized protei 33.2 86 0.0019 24.5 4.1 33 114-146 90-122 (316)
487 KOG2103 Uncharacterized conser 32.7 2.4E+02 0.0052 25.3 7.1 36 32-69 37-72 (910)
488 KOG2467 Glycine/serine hydroxy 32.4 42 0.00091 27.2 2.5 22 120-141 340-361 (477)
489 PF10168 Nup88: Nuclear pore c 32.4 1.1E+02 0.0024 26.8 5.2 31 31-63 147-180 (717)
490 PF07865 DUF1652: Protein of u 31.9 68 0.0015 19.2 2.8 27 116-143 11-39 (69)
491 PF00843 Arena_nucleocap: Aren 31.9 16 0.00034 29.9 0.1 18 127-144 148-165 (533)
492 PF10411 DsbC_N: Disulfide bon 31.5 61 0.0013 18.3 2.5 20 116-141 37-56 (57)
493 PRK13684 Ycf48-like protein; P 31.4 2.5E+02 0.0054 21.8 10.4 26 30-56 214-239 (334)
494 PF10214 Rrn6: RNA polymerase 31.1 3.7E+02 0.008 23.7 9.0 29 31-59 146-175 (765)
495 KOG1983 Tomosyn and related SN 31.0 49 0.0011 30.1 2.9 26 118-143 243-268 (993)
496 TIGR02171 Fb_sc_TIGR02171 Fibr 30.7 1.8E+02 0.004 26.3 6.2 51 8-62 329-385 (912)
497 PRK10526 acyl-CoA thioesterase 30.6 35 0.00075 26.1 1.8 22 115-136 264-285 (286)
498 PF13964 Kelch_6: Kelch motif 30.1 93 0.002 16.4 3.1 25 119-143 10-40 (50)
499 PF01344 Kelch_1: Kelch motif; 29.9 72 0.0016 16.4 2.6 24 120-143 11-40 (47)
500 cd06919 Asp_decarbox Aspartate 29.8 42 0.0009 22.1 1.7 17 131-147 41-57 (111)
No 1
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=7.6e-23 Score=157.55 Aligned_cols=141 Identities=17% Similarity=0.242 Sum_probs=111.4
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCce--
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE-- 78 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~-- 78 (147)
||+|+.||+|++|++.+.. ++..+. +|...|..++|+|+|++|++++-|.+-+| ||++++..+....||.....
T Consensus 234 lat~s~Dgtvklw~~~~e~-~l~~l~-gH~~RVs~VafHPsG~~L~TasfD~tWRl--WD~~tk~ElL~QEGHs~~v~~i 309 (459)
T KOG0272|consen 234 LATASADGTVKLWKLSQET-PLQDLE-GHLARVSRVAFHPSGKFLGTASFDSTWRL--WDLETKSELLLQEGHSKGVFSI 309 (459)
T ss_pred eeeeccCCceeeeccCCCc-chhhhh-cchhhheeeeecCCCceeeecccccchhh--cccccchhhHhhccccccccee
Confidence 6899999999999999863 555554 34456899999999999999999999999 88888777777788886533
Q ss_pred EEeeccceeeeecCCCcceeeeeee--eeeeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092 79 TCSVISFTSILAGDAPKYSSFYKVK--RLHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146 (147)
Q Consensus 79 ~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~ 146 (147)
+|..+. .++++|+.|.+-..|++. +..+++.|| ++++|+|.|..|||||+|++++|||++.++.+++
T Consensus 310 af~~DG-SL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ 382 (459)
T KOG0272|consen 310 AFQPDG-SLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYT 382 (459)
T ss_pred EecCCC-ceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccccccee
Confidence 232222 345667777655555554 456777777 5799999999999999999999999999888775
No 2
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=2.5e-21 Score=144.31 Aligned_cols=117 Identities=50% Similarity=0.834 Sum_probs=103.2
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCC--CcceeEEEeccCC--
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQ--QSKNFTFKCHRDG-- 76 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~--~~~~~~~~~h~~~-- 76 (147)
|++|+.|..|.+||+|+.+.+++..+++.+++++||++.|++.-+++++.||+|.+.++|.+. ....+.|+||+..
T Consensus 148 LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~ 227 (323)
T KOG1036|consen 148 LVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEK 227 (323)
T ss_pred EEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccC
Confidence 578899999999999998877766677888999999999999999999999999999898872 4567899999864
Q ss_pred --ceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092 77 --SETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF 147 (147)
Q Consensus 77 --~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~ 147 (147)
...+||+++ +|||-.+.|||||+||.|.+||+..+|++++|
T Consensus 228 ~~~~~yPVNai------------------------------~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~ 270 (323)
T KOG1036|consen 228 DTEIIYPVNAI------------------------------AFHPIHGTFATGGSDGIVNIWDLFNRKRLKQL 270 (323)
T ss_pred CceEEEEecee------------------------------EeccccceEEecCCCceEEEccCcchhhhhhc
Confidence 246788888 99999999999999999999999999998875
No 3
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.84 E-value=4.4e-21 Score=156.31 Aligned_cols=102 Identities=19% Similarity=0.320 Sum_probs=91.7
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC 80 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~ 80 (147)
+|+||.|.+||+||+.++.. +..+ .+|+.+|.+|+|||+|++||+|+.||.|+| ||+.+++.+..+.+|+.
T Consensus 550 ~aTGSsD~tVRlWDv~~G~~-VRiF-~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~i--WDl~~~~~v~~l~~Ht~----- 620 (707)
T KOG0263|consen 550 VATGSSDRTVRLWDVSTGNS-VRIF-TGHKGPVTALAFSPCGRYLASGDEDGLIKI--WDLANGSLVKQLKGHTG----- 620 (707)
T ss_pred cccCCCCceEEEEEcCCCcE-EEEe-cCCCCceEEEEEcCCCceEeecccCCcEEE--EEcCCCcchhhhhcccC-----
Confidence 58999999999999999975 4545 468889999999999999999999999999 88898999999999965
Q ss_pred eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCc
Q 032092 81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSK 141 (147)
Q Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~ 141 (147)
.++++ .||+||+.||+||+|.+|++||+...
T Consensus 621 ti~Sl------------------------------sFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 621 TIYSL------------------------------SFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred ceeEE------------------------------EEecCCCEEEecCCCCeEEEEEchhh
Confidence 47777 99999999999999999999998654
No 4
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.84 E-value=2e-20 Score=152.56 Aligned_cols=143 Identities=13% Similarity=0.092 Sum_probs=115.6
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCc--e
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGS--E 78 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~--~ 78 (147)
|++||+|++||||.+.+....+ ...+|..||..+.|+|-|-+||+++-|++.++|.-| ..+++..|.||-... .
T Consensus 466 LlScSED~svRLWsl~t~s~~V--~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d--~~~PlRifaghlsDV~cv 541 (707)
T KOG0263|consen 466 LLSCSEDSSVRLWSLDTWSCLV--IYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTD--HNKPLRIFAGHLSDVDCV 541 (707)
T ss_pred eeeccCCcceeeeecccceeEE--EecCCCcceeeEEecCCceEEEecCCCceeeeeecc--cCCchhhhcccccccceE
Confidence 6899999999999999986543 233677899999999999999999999999995444 467778888997653 2
Q ss_pred EEeeccceeeeecCCCcceeeeeee-eeeeeeeceE----EEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092 79 TCSVISFTSILAGDAPKYSSFYKVK-RLHLFVKSHV----IVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF 147 (147)
Q Consensus 79 ~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~ 147 (147)
.+-+++.++.++|+|-+++.|.... ...+.|.||. +++|||+|++||+|+.||.|.+||+.+++++.+|
T Consensus 542 ~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l 615 (707)
T KOG0263|consen 542 SFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQL 615 (707)
T ss_pred EECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhh
Confidence 4556776666666666777777554 3367889994 6999999999999999999999999998887653
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.84 E-value=9.4e-21 Score=146.07 Aligned_cols=142 Identities=13% Similarity=0.080 Sum_probs=116.0
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCc--e
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGS--E 78 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~--~ 78 (147)
|+|+|.|.+-++||+++++... ...+|..+|.+++|.|||..+++|+.|..-+| ||+|+++.+..|.+|..+. .
T Consensus 276 L~TasfD~tWRlWD~~tk~ElL--~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~Rv--WDlRtgr~im~L~gH~k~I~~V 351 (459)
T KOG0272|consen 276 LGTASFDSTWRLWDLETKSELL--LQEGHSKGVFSIAFQPDGSLAATGGLDSLGRV--WDLRTGRCIMFLAGHIKEILSV 351 (459)
T ss_pred eeecccccchhhcccccchhhH--hhcccccccceeEecCCCceeeccCccchhhe--eecccCcEEEEecccccceeeE
Confidence 6899999999999999986532 23466678999999999999999999999999 8999999999999998763 4
Q ss_pred EEeeccceeeeecCCCcceeeeeee-eeeeeeeceE----EEEEec-CCCeEEEeCCCCcEEEeecCCceeeec
Q 032092 79 TCSVISFTSILAGDAPKYSSFYKVK-RLHLFVKSHV----IVLFVQ-IHHTFATAGSDGAFNFWDKDSKQRLKV 146 (147)
Q Consensus 79 ~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~fsp-dg~~latg~~Dg~i~iWd~~~~~~~~~ 146 (147)
.++++..-+.++|+|..+++|.--. +....+++|. .|.|+| .|.+|+|||.|++++||..++.+++++
T Consensus 352 ~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ks 425 (459)
T KOG0272|consen 352 AFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKS 425 (459)
T ss_pred eECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchh
Confidence 6777775444556666666666333 3356789995 489999 569999999999999999999888765
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=3.4e-20 Score=141.97 Aligned_cols=142 Identities=15% Similarity=0.148 Sum_probs=105.7
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC 80 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~ 80 (147)
||+++.||.|+|||+..+... .. .++|..+|+||.|.-+| ++++|+.|++|++ |+...|+...++++|.......
T Consensus 220 las~skDg~vrIWd~~~~~~~-~~-lsgHT~~VTCvrwGG~g-liySgS~DrtIkv--w~a~dG~~~r~lkGHahwvN~l 294 (480)
T KOG0271|consen 220 LASSSKDGSVRIWDTKLGTCV-RT-LSGHTASVTCVRWGGEG-LIYSGSQDRTIKV--WRALDGKLCRELKGHAHWVNHL 294 (480)
T ss_pred eecccCCCCEEEEEccCceEE-EE-eccCccceEEEEEcCCc-eEEecCCCceEEE--EEccchhHHHhhcccchheeee
Confidence 688999999999999988643 33 34677899999997544 8899999999999 7777788888898886531111
Q ss_pred eec-------------cc------------------------eeeeecCCCc-ceeeeee--eeeeeeeece----EEEE
Q 032092 81 SVI-------------SF------------------------TSILAGDAPK-YSSFYKV--KRLHLFVKSH----VIVL 116 (147)
Q Consensus 81 ~v~-------------~~------------------------~~~~~~~~~~-~~~~~~~--~~~~~~~~~~----~~~~ 116 (147)
+.+ .. -.+.+|+|+. +.++.+. .+...-+.|| +.++
T Consensus 295 alsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~ 374 (480)
T KOG0271|consen 295 ALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVS 374 (480)
T ss_pred eccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEE
Confidence 111 11 1255666664 4444432 3344456666 6899
Q ss_pred EecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092 117 FVQIHHTFATAGSDGAFNFWDKDSKQRLKVF 147 (147)
Q Consensus 117 fspdg~~latg~~Dg~i~iWd~~~~~~~~~~ 147 (147)
||||++++|+|+-|+.|++||.++|+.+.+|
T Consensus 375 fSPd~r~IASaSFDkSVkLW~g~tGk~lasf 405 (480)
T KOG0271|consen 375 FSPDGRYIASASFDKSVKLWDGRTGKFLASF 405 (480)
T ss_pred ECCCccEEEEeecccceeeeeCCCcchhhhh
Confidence 9999999999999999999999999988765
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.82 E-value=6.2e-19 Score=130.31 Aligned_cols=141 Identities=16% Similarity=0.165 Sum_probs=106.8
Q ss_pred eEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEecc--CCc--
Q 032092 2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHR--DGS-- 77 (147)
Q Consensus 2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~--~~~-- 77 (147)
++|+.|+++++||+.+++ +..++. .|...|.+++|+||.+++++|+-|.+|++ |++- +...++...+. +-.
T Consensus 79 lS~swD~~lrlWDl~~g~-~t~~f~-GH~~dVlsva~s~dn~qivSGSrDkTikl--wnt~-g~ck~t~~~~~~~~WVsc 153 (315)
T KOG0279|consen 79 LSASWDGTLRLWDLATGE-STRRFV-GHTKDVLSVAFSTDNRQIVSGSRDKTIKL--WNTL-GVCKYTIHEDSHREWVSC 153 (315)
T ss_pred EeccccceEEEEEecCCc-EEEEEE-ecCCceEEEEecCCCceeecCCCcceeee--eeec-ccEEEEEecCCCcCcEEE
Confidence 688999999999999985 445554 45567999999999999999999999999 7765 44555554442 211
Q ss_pred eEEeecc-ceeeeecCCCcceeeeeeeee--eeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092 78 ETCSVIS-FTSILAGDAPKYSSFYKVKRL--HLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF 147 (147)
Q Consensus 78 ~~~~v~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~ 147 (147)
..+.++. -..+++.+.|+....|+|... ...+.|| +.+++||||...|+|+-||.+.+||+++++.++++
T Consensus 154 vrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl 230 (315)
T KOG0279|consen 154 VRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL 230 (315)
T ss_pred EEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec
Confidence 2355553 455677777766666666543 2245666 45999999999999999999999999999998875
No 8
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=1.7e-19 Score=138.19 Aligned_cols=134 Identities=18% Similarity=0.223 Sum_probs=105.9
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCc--e
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGS--E 78 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~--~ 78 (147)
|++|++|.++.+|+-...++|+.+.. .|+.-|+.+.||||++++|+++-|..|++ ||-++|+.+.+|+||-... .
T Consensus 339 lVSgsDd~tlflW~p~~~kkpi~rmt-gHq~lVn~V~fSPd~r~IASaSFDkSVkL--W~g~tGk~lasfRGHv~~VYqv 415 (480)
T KOG0271|consen 339 LVSGSDDFTLFLWNPFKSKKPITRMT-GHQALVNHVSFSPDGRYIASASFDKSVKL--WDGRTGKFLASFRGHVAAVYQV 415 (480)
T ss_pred eEEecCCceEEEecccccccchhhhh-chhhheeeEEECCCccEEEEeecccceee--eeCCCcchhhhhhhccceeEEE
Confidence 68999999999999988777766554 45567999999999999999999999999 8889999999999997643 2
Q ss_pred EEeeccceeeeecCCCcceeee-eeeeeeeeeece----EEEEEecCCCeEEEeCCCCcEEEee
Q 032092 79 TCSVISFTSILAGDAPKYSSFY-KVKRLHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWD 137 (147)
Q Consensus 79 ~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd 137 (147)
+++.++-.+++++.|.+..+|. ..+++..-++|| +.+.|+|||+.+++|+.|+.+++|-
T Consensus 416 awsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 416 AWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 3444443334444444566555 234455567888 5799999999999999999999994
No 9
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.81 E-value=3.3e-19 Score=132.97 Aligned_cols=115 Identities=57% Similarity=1.007 Sum_probs=95.9
Q ss_pred eEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCc----
Q 032092 2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGS---- 77 (147)
Q Consensus 2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~---- 77 (147)
++|..++.|.+|+++++...++++.++.+++++|||+.+|.+.+|.|+.+|++.|.++|....+..++|+||+..+
T Consensus 170 vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~ 249 (347)
T KOG0647|consen 170 VVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVND 249 (347)
T ss_pred EEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCC
Confidence 4556666666666666555566777788899999999999999999999999999888886667889999999642
Q ss_pred eEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092 78 ETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146 (147)
Q Consensus 78 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~ 146 (147)
..|+|+++ +|||....|+|+|+||++.+||.+.+.+|++
T Consensus 250 ~VYaVNsi------------------------------~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~ 288 (347)
T KOG0647|consen 250 DVYAVNSI------------------------------AFHPVHGTLVTAGSDGTFSFWDKDARTKLKT 288 (347)
T ss_pred ceEEecce------------------------------EeecccceEEEecCCceEEEecchhhhhhhc
Confidence 35677777 9999999999999999999999988887765
No 10
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.80 E-value=1.4e-18 Score=129.30 Aligned_cols=139 Identities=14% Similarity=0.155 Sum_probs=108.0
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEcc-CCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCC--c
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFP-DQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDG--S 77 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~sp-dg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~--~ 77 (147)
|+|||.|.++-+||+.++++ ...+. .|...|.+|+++| +++.|++|+.|+..+| ||.|++.-.++|.+|... .
T Consensus 159 ilT~SGD~TCalWDie~g~~-~~~f~-GH~gDV~slsl~p~~~ntFvSg~cD~~akl--WD~R~~~c~qtF~ghesDINs 234 (343)
T KOG0286|consen 159 ILTGSGDMTCALWDIETGQQ-TQVFH-GHTGDVMSLSLSPSDGNTFVSGGCDKSAKL--WDVRSGQCVQTFEGHESDINS 234 (343)
T ss_pred eEecCCCceEEEEEcccceE-EEEec-CCcccEEEEecCCCCCCeEEecccccceee--eeccCcceeEeecccccccce
Confidence 68999999999999999975 33443 5667799999999 8999999999999999 899999999999999864 2
Q ss_pred eEEeeccceeeeecCCC-cceeeeeee-eee------eeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceee
Q 032092 78 ETCSVISFTSILAGDAP-KYSSFYKVK-RLH------LFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRL 144 (147)
Q Consensus 78 ~~~~v~~~~~~~~~~~~-~~~~~~~~~-~~~------~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~ 144 (147)
..+-++.. .+++|+|| .++.|.--. +.. ..+.|.++++||-.|++|.+|..|.++.+||.-+++.+
T Consensus 235 v~ffP~G~-afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~v 308 (343)
T KOG0286|consen 235 VRFFPSGD-AFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERV 308 (343)
T ss_pred EEEccCCC-eeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceE
Confidence 23334443 45666666 455544211 222 23466789999999999999999999999998777654
No 11
>PTZ00421 coronin; Provisional
Probab=99.80 E-value=7.5e-19 Score=142.29 Aligned_cols=108 Identities=14% Similarity=0.183 Sum_probs=88.5
Q ss_pred CeEeecCCeEEEEECCCCc------cceeEecCCCCcceEEEEEccCC-CEEEEEeeCCeEEEEeecCCCCcceeEEEec
Q 032092 1 MVVGTADRNLVVFNLQNPQ------TEFKRINSPLKYQMRCVAAFPDQ-QGFWVGSIEGRVGVHHLDDSQQSKNFTFKCH 73 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~------~~~~~~~~~~~~~i~~la~spdg-~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h 73 (147)
|++|+.||+|+|||+.++. .++..+. .|...|.+|+|+|++ +.|++|+.|++|+| ||+.+++....+.+|
T Consensus 91 LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~-gH~~~V~~l~f~P~~~~iLaSgs~DgtVrI--WDl~tg~~~~~l~~h 167 (493)
T PTZ00421 91 LFTASEDGTIMGWGIPEEGLTQNISDPIVHLQ-GHTKKVGIVSFHPSAMNVLASAGADMVVNV--WDVERGKAVEVIKCH 167 (493)
T ss_pred EEEEeCCCEEEEEecCCCccccccCcceEEec-CCCCcEEEEEeCcCCCCEEEEEeCCCEEEE--EECCCCeEEEEEcCC
Confidence 6899999999999998652 1233333 456679999999985 68999999999999 677777777788777
Q ss_pred cCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092 74 RDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146 (147)
Q Consensus 74 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~ 146 (147)
.. .+.++ +|+|+|++||+|+.|++|+|||.++++.+.+
T Consensus 168 ~~-----~V~sl------------------------------a~spdG~lLatgs~Dg~IrIwD~rsg~~v~t 205 (493)
T PTZ00421 168 SD-----QITSL------------------------------EWNLDGSLLCTTSKDKKLNIIDPRDGTIVSS 205 (493)
T ss_pred CC-----ceEEE------------------------------EEECCCCEEEEecCCCEEEEEECCCCcEEEE
Confidence 65 35666 9999999999999999999999999887654
No 12
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.80 E-value=6.4e-19 Score=141.73 Aligned_cols=104 Identities=22% Similarity=0.364 Sum_probs=90.5
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC 80 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~ 80 (147)
|++|+.|++|+|||+.......+++. +|...|++++|+|+|+.+++|+.|++|+| ||.++++....+.+|..
T Consensus 218 l~s~s~D~tiriwd~~~~~~~~~~l~-gH~~~v~~~~f~p~g~~i~Sgs~D~tvri--Wd~~~~~~~~~l~~hs~----- 289 (456)
T KOG0266|consen 218 LLSGSDDKTLRIWDLKDDGRNLKTLK-GHSTYVTSVAFSPDGNLLVSGSDDGTVRI--WDVRTGECVRKLKGHSD----- 289 (456)
T ss_pred EEEecCCceEEEeeccCCCeEEEEec-CCCCceEEEEecCCCCEEEEecCCCcEEE--EeccCCeEEEeeeccCC-----
Confidence 58899999999999955433345554 56678999999999999999999999999 78888899999999986
Q ss_pred eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCce
Q 032092 81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQ 142 (147)
Q Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~ 142 (147)
.+..+ +|+|||++|++++.|+.|+|||+.+++
T Consensus 290 ~is~~------------------------------~f~~d~~~l~s~s~d~~i~vwd~~~~~ 321 (456)
T KOG0266|consen 290 GISGL------------------------------AFSPDGNLLVSASYDGTIRVWDLETGS 321 (456)
T ss_pred ceEEE------------------------------EECCCCCEEEEcCCCccEEEEECCCCc
Confidence 36666 999999999999999999999999988
No 13
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.78 E-value=1e-17 Score=124.65 Aligned_cols=145 Identities=15% Similarity=0.215 Sum_probs=109.1
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCC--CC--cceeEEEeccCC
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDS--QQ--SKNFTFKCHRDG 76 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~--~~--~~~~~~~~h~~~ 76 (147)
|+++|.||++-|||.-+.++ .+.+.-+ ...|...||+|.|+++|+|+.|+.+.|++...+ ++ +....+.+|+..
T Consensus 70 ivSaSqDGklIvWDs~TtnK-~haipl~-s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgy 147 (343)
T KOG0286|consen 70 IVSASQDGKLIVWDSFTTNK-VHAIPLP-SSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGY 147 (343)
T ss_pred EEeeccCCeEEEEEcccccc-eeEEecC-ceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccce
Confidence 57899999999999998765 3444322 246899999999999999999999999544433 11 344568889875
Q ss_pred ceEEe-eccceeeeecCCCcceeeee-eeeeeeeeeceE----EEEEec-CCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092 77 SETCS-VISFTSILAGDAPKYSSFYK-VKRLHLFVKSHV----IVLFVQ-IHHTFATAGSDGAFNFWDKDSKQRLKVF 147 (147)
Q Consensus 77 ~~~~~-v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~fsp-dg~~latg~~Dg~i~iWd~~~~~~~~~~ 147 (147)
..++. ++..-++++++|-++-.|.- ..+....|.||. +++++| ++++|+||+.|+..+|||++++.+.++|
T Consensus 148 lScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF 225 (343)
T KOG0286|consen 148 LSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTF 225 (343)
T ss_pred eEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEee
Confidence 43322 34444566666666665553 234466788994 799999 8899999999999999999999999887
No 14
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.77 E-value=1.1e-17 Score=123.75 Aligned_cols=144 Identities=13% Similarity=0.159 Sum_probs=107.8
Q ss_pred CeEeecCCeEEEEECCCCcc----ceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCC
Q 032092 1 MVVGTADRNLVVFNLQNPQT----EFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDG 76 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~----~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~ 76 (147)
|++++.|.++-+|++...+. +.+.+. +|...|..++.+|||++.++++.|+++++ ||+.+++....|.+|...
T Consensus 31 l~sasrDk~ii~W~L~~dd~~~G~~~r~~~-GHsH~v~dv~~s~dg~~alS~swD~~lrl--WDl~~g~~t~~f~GH~~d 107 (315)
T KOG0279|consen 31 LVSASRDKTIIVWKLTSDDIKYGVPVRRLT-GHSHFVSDVVLSSDGNFALSASWDGTLRL--WDLATGESTRRFVGHTKD 107 (315)
T ss_pred EEEcccceEEEEEEeccCccccCceeeeee-ccceEecceEEccCCceEEeccccceEEE--EEecCCcEEEEEEecCCc
Confidence 46789999999999977543 334444 46667999999999999999999999999 888888999999999987
Q ss_pred ceEEeec--cceeeeecCCCcceeeeeeeeeeeeeece------EEEEEecC--CCeEEEeCCCCcEEEeecCCceeeec
Q 032092 77 SETCSVI--SFTSILAGDAPKYSSFYKVKRLHLFVKSH------VIVLFVQI--HHTFATAGSDGAFNFWDKDSKQRLKV 146 (147)
Q Consensus 77 ~~~~~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~fspd--g~~latg~~Dg~i~iWd~~~~~~~~~ 146 (147)
....+++ .-.++++++|-++..+.-+-...+.+..+ .-+.|+|. ..+|+++|.|++|++||+++.++.++
T Consensus 108 Vlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~ 187 (315)
T KOG0279|consen 108 VLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTT 187 (315)
T ss_pred eEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhc
Confidence 5544443 33334444444555555444444433222 24799997 68999999999999999999887766
Q ss_pred C
Q 032092 147 F 147 (147)
Q Consensus 147 ~ 147 (147)
|
T Consensus 188 ~ 188 (315)
T KOG0279|consen 188 F 188 (315)
T ss_pred c
Confidence 5
No 15
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.77 E-value=6.6e-18 Score=128.69 Aligned_cols=141 Identities=15% Similarity=0.191 Sum_probs=110.8
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC 80 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~ 80 (147)
+++|+.|++|+|||+.+++ +..++ .+|...++.+++|+-..|+-+++.|++|++ ||+..++.+..+-||-....+.
T Consensus 166 f~tgs~DrtikIwDlatg~-Lkltl-tGhi~~vr~vavS~rHpYlFs~gedk~VKC--wDLe~nkvIR~YhGHlS~V~~L 241 (460)
T KOG0285|consen 166 FATGSADRTIKIWDLATGQ-LKLTL-TGHIETVRGVAVSKRHPYLFSAGEDKQVKC--WDLEYNKVIRHYHGHLSGVYCL 241 (460)
T ss_pred EEecCCCceeEEEEcccCe-EEEee-cchhheeeeeeecccCceEEEecCCCeeEE--EechhhhhHHHhccccceeEEE
Confidence 5899999999999999995 33333 346678999999999999999999999999 7777778888888887655444
Q ss_pred eec-cce-eeeecCCCcceeeeeeeee-eeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCCceeee
Q 032092 81 SVI-SFT-SILAGDAPKYSSFYKVKRL-HLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLK 145 (147)
Q Consensus 81 ~v~-~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~ 145 (147)
.+. .+. ++++|+|..+++|.--.+. +-++.|| .++.+.|....++||+.|++|++||+.-++-+.
T Consensus 242 ~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~ 313 (460)
T KOG0285|consen 242 DLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMI 313 (460)
T ss_pred eccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeE
Confidence 443 122 3566888888887754444 4467888 468999988889999999999999998877654
No 16
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.77 E-value=2e-19 Score=135.91 Aligned_cols=109 Identities=19% Similarity=0.318 Sum_probs=97.9
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC 80 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~ 80 (147)
||+|+.||+|++|-+++++.. .+++.+|...|.|+.||.|+..+++++-|.+++| --..+|+.+..|+||..
T Consensus 278 lAsGsqDGkIKvWri~tG~Cl-RrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRi--HGlKSGK~LKEfrGHsS----- 349 (508)
T KOG0275|consen 278 LASGSQDGKIKVWRIETGQCL-RRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRI--HGLKSGKCLKEFRGHSS----- 349 (508)
T ss_pred hhccCcCCcEEEEEEecchHH-HHhhhhhccCeeEEEEccCcchhhcccccceEEE--eccccchhHHHhcCccc-----
Confidence 689999999999999999763 4566567678999999999999999999999999 67778999999999986
Q ss_pred eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092 81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF 147 (147)
Q Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~ 147 (147)
-++.. .|++||..++++++||+|++|+.++.+|+.||
T Consensus 350 yvn~a------------------------------~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tf 386 (508)
T KOG0275|consen 350 YVNEA------------------------------TFTDDGHHIISASSDGTVKVWHGKTTECLSTF 386 (508)
T ss_pred cccce------------------------------EEcCCCCeEEEecCCccEEEecCcchhhhhhc
Confidence 37776 99999999999999999999999999999887
No 17
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.76 E-value=3e-17 Score=120.09 Aligned_cols=136 Identities=18% Similarity=0.252 Sum_probs=85.4
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCC-ceE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDG-SET 79 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~-~~~ 79 (147)
|++|++||++||||+|..... +. -.+..+|++|..+|+..-|++|..+|.|++ ||+.+......+.-.... ...
T Consensus 98 MyTgseDgt~kIWdlR~~~~q--R~-~~~~spVn~vvlhpnQteLis~dqsg~irv--WDl~~~~c~~~liPe~~~~i~s 172 (311)
T KOG0315|consen 98 MYTGSEDGTVKIWDLRSLSCQ--RN-YQHNSPVNTVVLHPNQTELISGDQSGNIRV--WDLGENSCTHELIPEDDTSIQS 172 (311)
T ss_pred EEecCCCceEEEEeccCcccc--hh-ccCCCCcceEEecCCcceEEeecCCCcEEE--EEccCCccccccCCCCCcceee
Confidence 579999999999999996532 22 124468999999999999999999999999 666543211111100000 001
Q ss_pred Eeeccc-eeeeecCCC-cceeeeeeee-------eeeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCCc
Q 032092 80 CSVISF-TSILAGDAP-KYSSFYKVKR-------LHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSK 141 (147)
Q Consensus 80 ~~v~~~-~~~~~~~~~-~~~~~~~~~~-------~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~ 141 (147)
..+... .++++.-+. ++-++.-+.+ ....+++| ++|-+|||+++|||+|+|.+++||++++.
T Consensus 173 l~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 173 LTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred EEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence 111111 122222222 2222221111 11134444 57999999999999999999999999876
No 18
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.75 E-value=1.8e-17 Score=123.64 Aligned_cols=141 Identities=16% Similarity=0.226 Sum_probs=107.2
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCce--
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE-- 78 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~-- 78 (147)
+.+|+.||+++|||+|+.+ .+++++ .++++++++|..+++.+.+|+.|+.|++ ||++.+...+++.||.....
T Consensus 148 v~SgsdD~t~kl~D~R~k~-~~~t~~--~kyqltAv~f~d~s~qv~sggIdn~ikv--Wd~r~~d~~~~lsGh~DtIt~l 222 (338)
T KOG0265|consen 148 VCSGSDDGTLKLWDIRKKE-AIKTFE--NKYQLTAVGFKDTSDQVISGGIDNDIKV--WDLRKNDGLYTLSGHADTITGL 222 (338)
T ss_pred EEecCCCceEEEEeecccc-hhhccc--cceeEEEEEecccccceeeccccCceee--eccccCcceEEeecccCceeeE
Confidence 4688999999999999865 345443 4578999999999999999999999999 89998899999999987421
Q ss_pred EEeeccceeeeecCCCcceeee-----eeeeeeeeeece--------EEEEEecCCCeEEEeCCCCcEEEeecCCceeee
Q 032092 79 TCSVISFTSILAGDAPKYSSFY-----KVKRLHLFVKSH--------VIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLK 145 (147)
Q Consensus 79 ~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~--------~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~ 145 (147)
....+...+++=+.+..++++. +-+|.+..+.|| +.|+|+|+++.+.+|+.|+.+++||...++.++
T Consensus 223 sls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~ly 302 (338)
T KOG0265|consen 223 SLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILY 302 (338)
T ss_pred EeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEE
Confidence 1111111222335555444332 345666677665 369999999999999999999999999988876
Q ss_pred c
Q 032092 146 V 146 (147)
Q Consensus 146 ~ 146 (147)
.
T Consensus 303 k 303 (338)
T KOG0265|consen 303 K 303 (338)
T ss_pred E
Confidence 4
No 19
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.75 E-value=9e-18 Score=136.70 Aligned_cols=145 Identities=15% Similarity=0.180 Sum_probs=110.4
Q ss_pred CeEeecCCeEEEEECCCCcc---ceeE----ecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEec
Q 032092 1 MVVGTADRNLVVFNLQNPQT---EFKR----INSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCH 73 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~---~~~~----~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h 73 (147)
++++|.|+++++|++...+. +... ....|...|++++++|+.+.+|+||.|.+.+| |+..+.+...++.||
T Consensus 427 fvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKi--W~le~~~l~~vLsGH 504 (775)
T KOG0319|consen 427 FVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKI--WDLEQLRLLGVLSGH 504 (775)
T ss_pred EEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceee--ecccCceEEEEeeCC
Confidence 58899999999999987321 1110 11235567999999999999999999999999 555578889999999
Q ss_pred cCCc--eEEeeccceeeeecCCCcceeeee-eeeeeeeeeceE----EEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092 74 RDGS--ETCSVISFTSILAGDAPKYSSFYK-VKRLHLFVKSHV----IVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146 (147)
Q Consensus 74 ~~~~--~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~ 146 (147)
+... ..|..++..+.++|+|-+++.|.- .-.+...+.||. +++|-.+|+.|++|++||-++|||++++.|+.+
T Consensus 505 ~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~t 584 (775)
T KOG0319|consen 505 TRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMT 584 (775)
T ss_pred ccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhh
Confidence 9753 234444443344566666666653 235567888884 689999999999999999999999999998875
Q ss_pred C
Q 032092 147 F 147 (147)
Q Consensus 147 ~ 147 (147)
+
T Consensus 585 l 585 (775)
T KOG0319|consen 585 L 585 (775)
T ss_pred h
Confidence 3
No 20
>PTZ00421 coronin; Provisional
Probab=99.75 E-value=7.9e-17 Score=130.56 Aligned_cols=141 Identities=11% Similarity=0.074 Sum_probs=99.1
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCc---
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGS--- 77 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~--- 77 (147)
|++|+.|++|+|||+++++. ...+. .+...|.+++|+|+|+.|++|+.||+|+| ||+++++.+.++.+|....
T Consensus 141 LaSgs~DgtVrIWDl~tg~~-~~~l~-~h~~~V~sla~spdG~lLatgs~Dg~IrI--wD~rsg~~v~tl~~H~~~~~~~ 216 (493)
T PTZ00421 141 LASAGADMVVNVWDVERGKA-VEVIK-CHSDQITSLEWNLDGSLLCTTSKDKKLNI--IDPRDGTIVSSVEAHASAKSQR 216 (493)
T ss_pred EEEEeCCCEEEEEECCCCeE-EEEEc-CCCCceEEEEEECCCCEEEEecCCCEEEE--EECCCCcEEEEEecCCCCcceE
Confidence 57899999999999998853 34443 35567999999999999999999999999 8888888888888886531
Q ss_pred eEEeeccceeeeecC---CC-cceeee--eeeeeeeee-----eceEEEEEecCCCeEEEeC-CCCcEEEeecCCceeee
Q 032092 78 ETCSVISFTSILAGD---AP-KYSSFY--KVKRLHLFV-----KSHVIVLFVQIHHTFATAG-SDGAFNFWDKDSKQRLK 145 (147)
Q Consensus 78 ~~~~v~~~~~~~~~~---~~-~~~~~~--~~~~~~~~~-----~~~~~~~fspdg~~latg~-~Dg~i~iWd~~~~~~~~ 145 (147)
..+....-.++++|. .+ .+.+|. .+....... .+...+.|+|++++|++|+ .|+.|++||+.+++.++
T Consensus 217 ~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~ 296 (493)
T PTZ00421 217 CLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTF 296 (493)
T ss_pred EEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEE
Confidence 122223233444442 23 333333 222221111 2234568999999988887 59999999999887664
No 21
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.75 E-value=5.9e-17 Score=118.58 Aligned_cols=146 Identities=16% Similarity=0.200 Sum_probs=106.2
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCC----CcceeEEEeccCC
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQ----QSKNFTFKCHRDG 76 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~----~~~~~~~~~h~~~ 76 (147)
|++|..+|.|++||+++.... +.+......+|+++++.|||.+++.+...|++.+|++=... -.++..|+.|..-
T Consensus 139 Lis~dqsg~irvWDl~~~~c~-~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~ 217 (311)
T KOG0315|consen 139 LISGDQSGNIRVWDLGENSCT-HELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGH 217 (311)
T ss_pred EEeecCCCcEEEEEccCCccc-cccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccce
Confidence 678999999999999986432 12222233579999999999999999999999995432211 2344556677654
Q ss_pred ce--EEeeccceeeeecCCCcceeee--eeeeeeeeeeceE----EEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092 77 SE--TCSVISFTSILAGDAPKYSSFY--KVKRLHLFVKSHV----IVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF 147 (147)
Q Consensus 77 ~~--~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~ 147 (147)
.. .+++....+.+.|+|.++.+|. ..-+..+.+.+|. .|+||.||++|.||++|+.+++||+..++.+++|
T Consensus 218 il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy 296 (311)
T KOG0315|consen 218 ILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQY 296 (311)
T ss_pred EEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeec
Confidence 32 3444555556678888766655 2234456778885 4999999999999999999999999999987764
No 22
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=9.7e-17 Score=118.40 Aligned_cols=139 Identities=11% Similarity=0.087 Sum_probs=103.6
Q ss_pred CeEeecCCeEEEEECCCCcc--ceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCc-
Q 032092 1 MVVGTADRNLVVFNLQNPQT--EFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGS- 77 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~--~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~- 77 (147)
||+|+.|+.||||+...+.. ....+...|+..|+++||+|.|++||+||-|.++.||.=...+.+.+.++.||.++.
T Consensus 30 lAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK 109 (312)
T KOG0645|consen 30 LASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVK 109 (312)
T ss_pred EEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeecccccee
Confidence 68999999999999996432 122334467778999999999999999999999999433333456678889998864
Q ss_pred -eEEeeccceeeeecCCCcceeeeee----eeeeeeeeceE----EEEEecCCCeEEEeCCCCcEEEeecC
Q 032092 78 -ETCSVISFTSILAGDAPKYSSFYKV----KRLHLFVKSHV----IVLFVQIHHTFATAGSDGAFNFWDKD 139 (147)
Q Consensus 78 -~~~~v~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~----~~~fspdg~~latg~~Dg~i~iWd~~ 139 (147)
.+++.+.-.+-+.++|.-++++... .....++..|+ .+.|||..-+|+|+|+|.+|++|.-.
T Consensus 110 ~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~ 180 (312)
T KOG0645|consen 110 CVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDE 180 (312)
T ss_pred EEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeec
Confidence 3444444333334666656665532 24466788886 59999998999999999999999876
No 23
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.75 E-value=2.3e-17 Score=128.96 Aligned_cols=143 Identities=12% Similarity=0.131 Sum_probs=104.6
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCc---
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGS--- 77 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~--- 77 (147)
+++++.||.|+++-+... .|++++.. |..+|.+|.|+|.|..|++++.|++++| |...+......|.+|..+.
T Consensus 332 F~ts~td~~i~V~kv~~~-~P~~t~~G-H~g~V~alk~n~tg~LLaS~SdD~Tlki--Ws~~~~~~~~~l~~Hskei~t~ 407 (524)
T KOG0273|consen 332 FATSSTDGCIHVCKVGED-RPVKTFIG-HHGEVNALKWNPTGSLLASCSDDGTLKI--WSMGQSNSVHDLQAHSKEIYTI 407 (524)
T ss_pred EeecCCCceEEEEEecCC-Ccceeeec-ccCceEEEEECCCCceEEEecCCCeeEe--eecCCCcchhhhhhhccceeeE
Confidence 368899999999999875 47777765 6678999999999999999999999999 5544444444455555221
Q ss_pred --------eEEeeccceeeeecCCCcceeeeeeeee-eeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCCceee
Q 032092 78 --------ETCSVISFTSILAGDAPKYSSFYKVKRL-HLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSKQRL 144 (147)
Q Consensus 78 --------~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~ 144 (147)
...+-....+++++.|..++.+.-...+ ...|..| .+++|+|+|+++|+|+.||.|+||+++++++.
T Consensus 408 ~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~ 487 (524)
T KOG0273|consen 408 KWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLV 487 (524)
T ss_pred eecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchhee
Confidence 1111122334555777776666543333 2345555 47999999999999999999999999999998
Q ss_pred ecC
Q 032092 145 KVF 147 (147)
Q Consensus 145 ~~~ 147 (147)
++|
T Consensus 488 ~s~ 490 (524)
T KOG0273|consen 488 KSY 490 (524)
T ss_pred Eee
Confidence 864
No 24
>PTZ00420 coronin; Provisional
Probab=99.74 E-value=2.6e-17 Score=134.78 Aligned_cols=107 Identities=9% Similarity=0.118 Sum_probs=83.4
Q ss_pred CeEeecCCeEEEEECCCCcc-------ceeEecCCCCcceEEEEEccCCCE-EEEEeeCCeEEEEeecCCCCcceeEEEe
Q 032092 1 MVVGTADRNLVVFNLQNPQT-------EFKRINSPLKYQMRCVAAFPDQQG-FWVGSIEGRVGVHHLDDSQQSKNFTFKC 72 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~-------~~~~~~~~~~~~i~~la~spdg~~-l~~g~~dg~i~i~~~d~~~~~~~~~~~~ 72 (147)
||+|+.||+|+|||+.++.. +...+ ..|...|.+++|+|++.. +++|+.||+|+| ||+++++....+.
T Consensus 90 LASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L-~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrI--WDl~tg~~~~~i~- 165 (568)
T PTZ00420 90 LASGSEDLTIRVWEIPHNDESVKEIKDPQCIL-KGHKKKISIIDWNPMNYYIMCSSGFDSFVNI--WDIENEKRAFQIN- 165 (568)
T ss_pred EEEEeCCCeEEEEECCCCCccccccccceEEe-ecCCCcEEEEEECCCCCeEEEEEeCCCeEEE--EECCCCcEEEEEe-
Confidence 68999999999999986432 11122 245567999999999876 578999999999 7777776655554
Q ss_pred ccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092 73 HRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146 (147)
Q Consensus 73 h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~ 146 (147)
|.. .+.++ +|+|+|++|++++.|+.|+|||.++++.+.+
T Consensus 166 ~~~-----~V~Sl------------------------------swspdG~lLat~s~D~~IrIwD~Rsg~~i~t 204 (568)
T PTZ00420 166 MPK-----KLSSL------------------------------KWNIKGNLLSGTCVGKHMHIIDPRKQEIASS 204 (568)
T ss_pred cCC-----cEEEE------------------------------EECCCCCEEEEEecCCEEEEEECCCCcEEEE
Confidence 221 24555 9999999999999999999999999887765
No 25
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.74 E-value=2e-17 Score=133.05 Aligned_cols=109 Identities=18% Similarity=0.269 Sum_probs=89.8
Q ss_pred CeEeecCCeEEEEECCCCc-cceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecC-CCCcceeEEEeccCCce
Q 032092 1 MVVGTADRNLVVFNLQNPQ-TEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDD-SQQSKNFTFKCHRDGSE 78 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~-~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~-~~~~~~~~~~~h~~~~~ 78 (147)
|++++.|+.+++|+....+ .....+ ..|...|++++|+||++++++|+.|++++| ||+ ..++.+.++++|..
T Consensus 174 l~~~~~~~~i~~~~~~~~~~~~~~~l-~~h~~~v~~~~fs~d~~~l~s~s~D~tiri--wd~~~~~~~~~~l~gH~~--- 247 (456)
T KOG0266|consen 174 LAAASSDGLIRIWKLEGIKSNLLREL-SGHTRGVSDVAFSPDGSYLLSGSDDKTLRI--WDLKDDGRNLKTLKGHST--- 247 (456)
T ss_pred EEEccCCCcEEEeecccccchhhccc-cccccceeeeEECCCCcEEEEecCCceEEE--eeccCCCeEEEEecCCCC---
Confidence 5778899999999996554 122222 345567999999999999999999999999 666 44578899999987
Q ss_pred EEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092 79 TCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF 147 (147)
Q Consensus 79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~ 147 (147)
.++++ +|+|+|+++++|+.|++|+|||+++++++..+
T Consensus 248 --~v~~~------------------------------~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l 284 (456)
T KOG0266|consen 248 --YVTSV------------------------------AFSPDGNLLVSGSDDGTVRIWDVRTGECVRKL 284 (456)
T ss_pred --ceEEE------------------------------EecCCCCEEEEecCCCcEEEEeccCCeEEEee
Confidence 36666 99999999999999999999999998887653
No 26
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=2.9e-17 Score=132.23 Aligned_cols=143 Identities=16% Similarity=0.227 Sum_probs=107.7
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccC-CCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPD-QQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSET 79 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spd-g~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~ 79 (147)
++++|+|-+|++||....=...++++ +|..-|.+|+|+|. .+.||+++.|++|++ |...+..+.+++++|.....+
T Consensus 112 vLtsSDDm~iKlW~we~~wa~~qtfe-GH~HyVMqv~fnPkD~ntFaS~sLDrTVKV--Wslgs~~~nfTl~gHekGVN~ 188 (794)
T KOG0276|consen 112 VLTSSDDMTIKLWDWENEWACEQTFE-GHEHYVMQVAFNPKDPNTFASASLDRTVKV--WSLGSPHPNFTLEGHEKGVNC 188 (794)
T ss_pred EEecCCccEEEEeeccCceeeeeEEc-CcceEEEEEEecCCCccceeeeeccccEEE--EEcCCCCCceeeeccccCcce
Confidence 46889999999999998633334454 56667999999994 789999999999999 666667888999999865321
Q ss_pred ---EeeccceeeeecCCC-cceeee-eeeeeeeeeeceE----EEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092 80 ---CSVISFTSILAGDAP-KYSSFY-KVKRLHLFVKSHV----IVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146 (147)
Q Consensus 80 ---~~v~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~----~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~ 146 (147)
++-..-..+++|+|| .+.+|. +.+.+...+.||. .+.|||.-..++|||.||++|||+..+-++.++
T Consensus 189 Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~t 264 (794)
T KOG0276|consen 189 VDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKT 264 (794)
T ss_pred EEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhh
Confidence 222222234555555 555544 6677778888884 489999999999999999999999988765543
No 27
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.73 E-value=4e-17 Score=129.09 Aligned_cols=108 Identities=19% Similarity=0.348 Sum_probs=88.9
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEE---eccCCc
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFK---CHRDGS 77 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~---~h~~~~ 77 (147)
+++|++|++|.+|+=.-++ |+.....|..-|+|+.|+|||+.||+.+.||+|.| +|-.+++.+..+. +|+.
T Consensus 163 i~T~sdDn~v~ffeGPPFK--Fk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~i--yDGktge~vg~l~~~~aHkG-- 236 (603)
T KOG0318|consen 163 IATGSDDNTVAFFEGPPFK--FKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYI--YDGKTGEKVGELEDSDAHKG-- 236 (603)
T ss_pred EEeccCCCeEEEeeCCCee--eeecccccccceeeEEECCCCCeEEEecCCccEEE--EcCCCccEEEEecCCCCccc--
Confidence 5899999999999754332 22211223334999999999999999999999999 9999999998887 4543
Q ss_pred eEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092 78 ETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF 147 (147)
Q Consensus 78 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~ 147 (147)
.+.++ +|+||++.|+|++.|.+++|||+.+++++++|
T Consensus 237 ---sIfal------------------------------sWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~ 273 (603)
T KOG0318|consen 237 ---SIFAL------------------------------SWSPDSTQFLTVSADKTIKIWDVSTNSLVSTW 273 (603)
T ss_pred ---cEEEE------------------------------EECCCCceEEEecCCceEEEEEeeccceEEEe
Confidence 46666 99999999999999999999999999998875
No 28
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=6.6e-17 Score=118.56 Aligned_cols=138 Identities=17% Similarity=0.225 Sum_probs=102.0
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccC-CCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCc--
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPD-QQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGS-- 77 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spd-g~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~-- 77 (147)
+++|+.||+++|||+.....|++.+. .|+.+|.++.+++. .+.++++|.||+|+| ||...++.+.+|++|....
T Consensus 76 ~~~a~GDGSLrl~d~~~~s~Pi~~~k-EH~~EV~Svdwn~~~r~~~ltsSWD~TiKL--W~~~r~~Sv~Tf~gh~~~Iy~ 152 (311)
T KOG0277|consen 76 VIAASGDGSLRLFDLTMPSKPIHKFK-EHKREVYSVDWNTVRRRIFLTSSWDGTIKL--WDPNRPNSVQTFNGHNSCIYQ 152 (311)
T ss_pred EEEEecCceEEEeccCCCCcchhHHH-hhhhheEEeccccccceeEEeeccCCceEe--ecCCCCcceEeecCCccEEEE
Confidence 47899999999999887777766554 36678999999995 677899999999999 7777788999999997632
Q ss_pred eEEeeccceeeee-cCCCcceeeee-eeeeeeeeece----EEEEEec-CCCeEEEeCCCCcEEEeecCCc
Q 032092 78 ETCSVISFTSILA-GDAPKYSSFYK-VKRLHLFVKSH----VIVLFVQ-IHHTFATAGSDGAFNFWDKDSK 141 (147)
Q Consensus 78 ~~~~v~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~----~~~~fsp-dg~~latg~~Dg~i~iWd~~~~ 141 (147)
..+.+..-.++++ ++|...+.+.. .......+.+| +.|.|+. +.++|+||+.|+.|++||++.-
T Consensus 153 a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~ 223 (311)
T KOG0277|consen 153 AAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNL 223 (311)
T ss_pred EecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhc
Confidence 2233333334544 66665554441 11223346666 4689998 5589999999999999999864
No 29
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=5.6e-17 Score=130.54 Aligned_cols=143 Identities=14% Similarity=0.200 Sum_probs=112.0
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCce--
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE-- 78 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~-- 78 (147)
+++|++|..||+|+..++++ ++.++ +|..-|++|+.+|...+++++|+|=+|++|+|+.. ....++|.||....+
T Consensus 70 iv~GsDD~~IrVfnynt~ek-V~~Fe-AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~-wa~~qtfeGH~HyVMqv 146 (794)
T KOG0276|consen 70 IVTGSDDMQIRVFNYNTGEK-VKTFE-AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE-WACEQTFEGHEHYVMQV 146 (794)
T ss_pred EEEecCCceEEEEeccccee-eEEee-ccccceeeeeecCCCCeEEecCCccEEEEeeccCc-eeeeeEEcCcceEEEEE
Confidence 57999999999999999976 56665 45556999999999999999999999999999864 466789999987644
Q ss_pred EEeeccceeeeecCCCcceeeeeeeee--eeeeece----EEEEEecCC--CeEEEeCCCCcEEEeecCCceeeec
Q 032092 79 TCSVISFTSILAGDAPKYSSFYKVKRL--HLFVKSH----VIVLFVQIH--HTFATAGSDGAFNFWDKDSKQRLKV 146 (147)
Q Consensus 79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~fspdg--~~latg~~Dg~i~iWd~~~~~~~~~ 146 (147)
++.+..-..+++++-|.....|.+.+. +..+.|| +.+.|-|-| .+|+||+.|-+|+|||.+++.|+.|
T Consensus 147 ~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~T 222 (794)
T KOG0276|consen 147 AFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQT 222 (794)
T ss_pred EecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHH
Confidence 333334445777777754444444433 4456666 568888755 7999999999999999999998865
No 30
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.72 E-value=8.5e-18 Score=129.52 Aligned_cols=107 Identities=17% Similarity=0.261 Sum_probs=92.4
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC 80 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~ 80 (147)
+++||+||+|+|||.+.++.+ ..+ .+|...|+|++|+|....+++|+.|..|++ ||++++..+.++.+|++
T Consensus 195 F~t~SdDg~ikiWdf~~~kee-~vL-~GHgwdVksvdWHP~kgLiasgskDnlVKl--WDprSg~cl~tlh~HKn----- 265 (464)
T KOG0284|consen 195 FLTCSDDGTIKIWDFRMPKEE-RVL-RGHGWDVKSVDWHPTKGLIASGSKDNLVKL--WDPRSGSCLATLHGHKN----- 265 (464)
T ss_pred eEEecCCCeEEEEeccCCchh-hee-ccCCCCcceeccCCccceeEEccCCceeEe--ecCCCcchhhhhhhccc-----
Confidence 478999999999999998643 223 467778999999999999999999999999 99999999999998987
Q ss_pred eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092 81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146 (147)
Q Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~ 146 (147)
.|..+ .|+|++++|+|+|.|..++++|+++.+.+++
T Consensus 266 tVl~~------------------------------~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~ 301 (464)
T KOG0284|consen 266 TVLAV------------------------------KFNPNGNWLLTGSKDQSCKVFDIRTMKELFT 301 (464)
T ss_pred eEEEE------------------------------EEcCCCCeeEEccCCceEEEEehhHhHHHHH
Confidence 35555 9999999999999999999999986655544
No 31
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.72 E-value=1.9e-16 Score=129.62 Aligned_cols=136 Identities=18% Similarity=0.191 Sum_probs=101.9
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCc-eE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGS-ET 79 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~-~~ 79 (147)
||||++||+|+|||.+++-+ +.++. .|...|+.+.|+..|+.+++.+.||+|+. ||....+.-.+|++..... .+
T Consensus 365 iaTG~eDgKVKvWn~~SgfC-~vTFt-eHts~Vt~v~f~~~g~~llssSLDGtVRA--wDlkRYrNfRTft~P~p~Qfsc 440 (893)
T KOG0291|consen 365 IATGAEDGKVKVWNTQSGFC-FVTFT-EHTSGVTAVQFTARGNVLLSSSLDGTVRA--WDLKRYRNFRTFTSPEPIQFSC 440 (893)
T ss_pred EEeccCCCcEEEEeccCceE-EEEec-cCCCceEEEEEEecCCEEEEeecCCeEEe--eeecccceeeeecCCCceeeeE
Confidence 68999999999999999864 44554 35567999999999999999999999999 6666666667777644322 33
Q ss_pred Eeecc-ceeeeecCCCcce-eeeeee--eeeeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCC
Q 032092 80 CSVIS-FTSILAGDAPKYS-SFYKVK--RLHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDS 140 (147)
Q Consensus 80 ~~v~~-~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~ 140 (147)
.+++. -.++.+|..+.+. ..|.++ +..-.+.|| .+++|+|+|..|||||-|.+||+||+-+
T Consensus 441 vavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~ 509 (893)
T KOG0291|consen 441 VAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFS 509 (893)
T ss_pred EEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeec
Confidence 44442 2345566666433 344444 445578888 4689999999999999999999999744
No 32
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.72 E-value=9.1e-17 Score=118.15 Aligned_cols=141 Identities=15% Similarity=0.153 Sum_probs=98.6
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEe--ccCCce
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKC--HRDGSE 78 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~--h~~~~~ 78 (147)
+++++.|.+|++||+++++ +...+.. +..-.-+.|+|+|+++++|+.|..|.. +|.++.+...+++- ..++ .
T Consensus 80 ~atas~dk~ir~wd~r~~k-~~~~i~~--~~eni~i~wsp~g~~~~~~~kdD~it~--id~r~~~~~~~~~~~~e~ne-~ 153 (313)
T KOG1407|consen 80 FATASGDKTIRIWDIRSGK-CTARIET--KGENINITWSPDGEYIAVGNKDDRITF--IDARTYKIVNEEQFKFEVNE-I 153 (313)
T ss_pred eEEecCCceEEEEEeccCc-EEEEeec--cCcceEEEEcCCCCEEEEecCcccEEE--EEecccceeehhcccceeee-e
Confidence 5889999999999999986 4555543 233456899999999999999999998 89887655443321 1111 1
Q ss_pred EEeeccceeeeecCCCcceeee-eeeeeeeeeeceEE----EEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092 79 TCSVISFTSILAGDAPKYSSFY-KVKRLHLFVKSHVI----VLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF 147 (147)
Q Consensus 79 ~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~ 147 (147)
.+.-.....++..+...+.++. +.-+.+..+++|.+ +.|+|+|++||+|++|..+-+||+++.-|++.|
T Consensus 154 ~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~i 227 (313)
T KOG1407|consen 154 SWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCI 227 (313)
T ss_pred eecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheee
Confidence 2221122244555555555433 32234567788854 799999999999999999999999987776654
No 33
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.72 E-value=1.8e-16 Score=120.73 Aligned_cols=141 Identities=16% Similarity=0.219 Sum_probs=107.3
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCc--e
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGS--E 78 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~--~ 78 (147)
++||+.|..-.||++.+++.+.. + ..|+..|.++.||.||.+||+|+.+|.|+| |+..++....++...-..- .
T Consensus 79 ~aTGGgDD~AflW~~~~ge~~~e-l-tgHKDSVt~~~FshdgtlLATGdmsG~v~v--~~~stg~~~~~~~~e~~dieWl 154 (399)
T KOG0296|consen 79 VATGGGDDLAFLWDISTGEFAGE-L-TGHKDSVTCCSFSHDGTLLATGDMSGKVLV--FKVSTGGEQWKLDQEVEDIEWL 154 (399)
T ss_pred EEecCCCceEEEEEccCCcceeE-e-cCCCCceEEEEEccCceEEEecCCCccEEE--EEcccCceEEEeecccCceEEE
Confidence 47999999999999999975433 3 357889999999999999999999999999 7777776666653111110 1
Q ss_pred EEeeccceeeeecCCCcceeeeee-e-eeeeeeeceEE----EEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092 79 TCSVISFTSILAGDAPKYSSFYKV-K-RLHLFVKSHVI----VLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146 (147)
Q Consensus 79 ~~~v~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~----~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~ 146 (147)
.+-+.. .++++|++|+....|++ + .....+.||++ =.|.|||+.+++|..||+|++||.++++.++.
T Consensus 155 ~WHp~a-~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~ 227 (399)
T KOG0296|consen 155 KWHPRA-HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHK 227 (399)
T ss_pred Eecccc-cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEE
Confidence 222322 35677888865444433 3 55778999964 38999999999999999999999999988764
No 34
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.70 E-value=6.6e-17 Score=117.64 Aligned_cols=106 Identities=15% Similarity=0.256 Sum_probs=88.2
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC 80 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~ 80 (147)
|++|+.||++|.||+|.++. .. .-...||+|++|+||+++.++|+.|+++++ +|..+|+.+..+++|++. .+
T Consensus 158 IvaGS~DGtvRtydiR~G~l-~s---Dy~g~pit~vs~s~d~nc~La~~l~stlrL--lDk~tGklL~sYkGhkn~--ey 229 (307)
T KOG0316|consen 158 IVAGSVDGTVRTYDIRKGTL-SS---DYFGHPITSVSFSKDGNCSLASSLDSTLRL--LDKETGKLLKSYKGHKNM--EY 229 (307)
T ss_pred EEeeccCCcEEEEEeeccee-eh---hhcCCcceeEEecCCCCEEEEeeccceeee--cccchhHHHHHhcccccc--ee
Confidence 57899999999999999953 11 112358999999999999999999999999 999999999999999874 23
Q ss_pred eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeee
Q 032092 81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLK 145 (147)
Q Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~ 145 (147)
.+. +.++.....+++|+.||.|++||+.+...+.
T Consensus 230 kld-------------------------------c~l~qsdthV~sgSEDG~Vy~wdLvd~~~~s 263 (307)
T KOG0316|consen 230 KLD-------------------------------CCLNQSDTHVFSGSEDGKVYFWDLVDETQIS 263 (307)
T ss_pred eee-------------------------------eeecccceeEEeccCCceEEEEEeccceeee
Confidence 332 2677777899999999999999998876654
No 35
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.70 E-value=7e-17 Score=130.24 Aligned_cols=110 Identities=19% Similarity=0.297 Sum_probs=93.3
Q ss_pred CeEeecCCeEEEEECCCCcc-ce--------eEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEE
Q 032092 1 MVVGTADRNLVVFNLQNPQT-EF--------KRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFK 71 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~-~~--------~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~ 71 (147)
+|+|+-|+.|.|||+.++.. ++ ....++++.+|.++|.+|.|..|++|+.++.+++ ||.++.+.+..++
T Consensus 133 vaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~--wDprt~~kimkLr 210 (735)
T KOG0308|consen 133 VASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRL--WDPRTCKKIMKLR 210 (735)
T ss_pred EEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEE--eccccccceeeee
Confidence 47899999999999997732 11 1122245567999999999999999999999999 9999999999999
Q ss_pred eccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092 72 CHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF 147 (147)
Q Consensus 72 ~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~ 147 (147)
||+.. |..+ ..++||+.++|||+||+|++||+...+|+.||
T Consensus 211 GHTdN-----Vr~l------------------------------l~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~ 251 (735)
T KOG0308|consen 211 GHTDN-----VRVL------------------------------LVNDDGTRLLSASSDGTIRLWDLGQQRCLATY 251 (735)
T ss_pred ccccc-----eEEE------------------------------EEcCCCCeEeecCCCceEEeeeccccceeeeE
Confidence 99974 4444 77899999999999999999999999999876
No 36
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.70 E-value=4e-17 Score=120.41 Aligned_cols=135 Identities=16% Similarity=0.245 Sum_probs=95.7
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCC--ce
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDG--SE 78 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~--~~ 78 (147)
|++|.+||.|.+||++++++.+.... .|...|+.|+++||..+|++|+.|.+.++ ||.++-..+.+|...+.- ..
T Consensus 162 ii~Ghe~G~is~~da~~g~~~v~s~~-~h~~~Ind~q~s~d~T~FiT~s~Dttakl--~D~~tl~v~Kty~te~PvN~aa 238 (327)
T KOG0643|consen 162 IIAGHEDGSISIYDARTGKELVDSDE-EHSSKINDLQFSRDRTYFITGSKDTTAKL--VDVRTLEVLKTYTTERPVNTAA 238 (327)
T ss_pred EEEecCCCcEEEEEcccCceeeechh-hhccccccccccCCcceEEecccCcccee--eeccceeeEEEeeeccccccee
Confidence 57899999999999999876544332 34557999999999999999999999999 777777777788764421 11
Q ss_pred EEeeccceeeeecCCCccee-------------ee------eeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecC
Q 032092 79 TCSVISFTSILAGDAPKYSS-------------FY------KVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKD 139 (147)
Q Consensus 79 ~~~v~~~~~~~~~~~~~~~~-------------~~------~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~ 139 (147)
..|+.. -.|++|+.+...+ |+ ++-|+.-+|-.+++++|||||+..++||.||.|++--.+
T Consensus 239 isP~~d-~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 239 ISPLLD-HVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred cccccc-eEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence 111111 2356666553221 11 122444455555789999999999999999999987543
No 37
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.70 E-value=1.5e-16 Score=121.73 Aligned_cols=102 Identities=15% Similarity=0.259 Sum_probs=83.5
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCC---CcceeEEEeccCCc
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQ---QSKNFTFKCHRDGS 77 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~---~~~~~~~~~h~~~~ 77 (147)
+|+||.||+|+|||+|.+.+.-......|...|+.|.|+.+-.+||+|+.||+++| ||+|+ ++++.+|+-|+.
T Consensus 273 faScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~i--wDLR~~~~~~pVA~fk~Hk~-- 348 (440)
T KOG0302|consen 273 FASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSI--WDLRQFKSGQPVATFKYHKA-- 348 (440)
T ss_pred EEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEE--EEhhhccCCCcceeEEeccC--
Confidence 58999999999999999743212222356667999999998779999999999999 77775 556778888876
Q ss_pred eEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCC-CeEEEeCCCCcEEEeecC
Q 032092 78 ETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIH-HTFATAGSDGAFNFWDKD 139 (147)
Q Consensus 78 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg-~~latg~~Dg~i~iWd~~ 139 (147)
+++++ .|+|.. ..||++|.|..|.|||+.
T Consensus 349 ---pItsi------------------------------eW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 349 ---PITSI------------------------------EWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred ---CeeEE------------------------------EeccccCceEEeccCCCcEEEEEee
Confidence 67777 999954 889999999999999985
No 38
>PTZ00420 coronin; Provisional
Probab=99.69 E-value=4.7e-16 Score=127.47 Aligned_cols=110 Identities=14% Similarity=0.180 Sum_probs=84.2
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC 80 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~ 80 (147)
|++|+.|++|+|||+++++.. ..+. +...|.+++|+|+|+.|++++.|++|+| ||+++++.+.++.+|.......
T Consensus 141 LaSgS~DgtIrIWDl~tg~~~-~~i~--~~~~V~SlswspdG~lLat~s~D~~IrI--wD~Rsg~~i~tl~gH~g~~~s~ 215 (568)
T PTZ00420 141 MCSSGFDSFVNIWDIENEKRA-FQIN--MPKKLSSLKWNIKGNLLSGTCVGKHMHI--IDPRKQEIASSFHIHDGGKNTK 215 (568)
T ss_pred EEEEeCCCeEEEEECCCCcEE-EEEe--cCCcEEEEEECCCCCEEEEEecCCEEEE--EECCCCcEEEEEecccCCceeE
Confidence 368899999999999998643 3333 2346999999999999999999999999 8888888888898887531111
Q ss_pred eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCC----cEEEeecCC-ceeee
Q 032092 81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDG----AFNFWDKDS-KQRLK 145 (147)
Q Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg----~i~iWd~~~-~~~~~ 145 (147)
.+... .|+|++++|+|+|.|+ .|+|||+++ .+.++
T Consensus 216 ~v~~~------------------------------~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~ 255 (568)
T PTZ00420 216 NIWID------------------------------GLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALV 255 (568)
T ss_pred EEEee------------------------------eEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceE
Confidence 11111 6789999999988775 799999985 44443
No 39
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.69 E-value=9.7e-17 Score=125.66 Aligned_cols=140 Identities=22% Similarity=0.264 Sum_probs=97.7
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCC-CEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCc--
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQ-QGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGS-- 77 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg-~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~-- 77 (147)
+.+++-|+.|++||+.+|++. .++.. ...+.|+.|.||+ +.|++|+.|+.|+. ||+|+++.++++..|-...
T Consensus 273 fLS~sfD~~lKlwDtETG~~~-~~f~~--~~~~~cvkf~pd~~n~fl~G~sd~ki~~--wDiRs~kvvqeYd~hLg~i~~ 347 (503)
T KOG0282|consen 273 FLSASFDRFLKLWDTETGQVL-SRFHL--DKVPTCVKFHPDNQNIFLVGGSDKKIRQ--WDIRSGKVVQEYDRHLGAILD 347 (503)
T ss_pred eeeeecceeeeeeccccceEE-EEEec--CCCceeeecCCCCCcEEEEecCCCcEEE--EeccchHHHHHHHhhhhheee
Confidence 468999999999999999753 34432 3468999999997 89999999999999 8889888877776554321
Q ss_pred eEEeeccceeeeecCCCcceeeeee-----e----------------------------------------eee--eeee
Q 032092 78 ETCSVISFTSILAGDAPKYSSFYKV-----K----------------------------------------RLH--LFVK 110 (147)
Q Consensus 78 ~~~~v~~~~~~~~~~~~~~~~~~~~-----~----------------------------------------~~~--~~~~ 110 (147)
..+-...-..|++++|..+++|..- + +.+ ..+.
T Consensus 348 i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~fe 427 (503)
T KOG0282|consen 348 ITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFE 427 (503)
T ss_pred eEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhc
Confidence 1222222233444555544432210 0 000 0145
Q ss_pred ceE------EEEEecCCCeEEEeCCCCcEEEeecCCceeee
Q 032092 111 SHV------IVLFVQIHHTFATAGSDGAFNFWDKDSKQRLK 145 (147)
Q Consensus 111 ~~~------~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~ 145 (147)
||. .|.|||||.+|++|++||.+.+||.++-+++.
T Consensus 428 Gh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~ 468 (503)
T KOG0282|consen 428 GHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVS 468 (503)
T ss_pred ceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhh
Confidence 563 49999999999999999999999998876654
No 40
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.69 E-value=7.7e-16 Score=120.52 Aligned_cols=138 Identities=11% Similarity=0.117 Sum_probs=101.8
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCce--
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE-- 78 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~-- 78 (147)
||+|+.||.++||+..... ..++ ..|+.||.+|.|+-+|++|++++.||++.| ||.-+++....|.-|...+.
T Consensus 250 LatG~~~G~~riw~~~G~l--~~tl-~~HkgPI~slKWnk~G~yilS~~vD~ttil--wd~~~g~~~q~f~~~s~~~lDV 324 (524)
T KOG0273|consen 250 LATGSEDGEARIWNKDGNL--ISTL-GQHKGPIFSLKWNKKGTYILSGGVDGTTIL--WDAHTGTVKQQFEFHSAPALDV 324 (524)
T ss_pred EEEeecCcEEEEEecCchh--hhhh-hccCCceEEEEEcCCCCEEEeccCCccEEE--EeccCceEEEeeeeccCCccce
Confidence 6899999999999998753 2233 357889999999999999999999999999 88877777666666654321
Q ss_pred EEeeccceeeeecCCCcceeee-eeeeeeeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCCceee
Q 032092 79 TCSVISFTSILAGDAPKYSSFY-KVKRLHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSKQRL 144 (147)
Q Consensus 79 ~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~ 144 (147)
.+. +.....+++.|.-+.+++ ..+++...+.|| +.+.|+|.|.+|+||+.|++++||+.....+.
T Consensus 325 dW~-~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~ 394 (524)
T KOG0273|consen 325 DWQ-SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSV 394 (524)
T ss_pred EEe-cCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcch
Confidence 221 222233344444455555 334666677777 45899999999999999999999997655443
No 41
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.68 E-value=1.3e-16 Score=130.68 Aligned_cols=138 Identities=14% Similarity=0.182 Sum_probs=104.3
Q ss_pred CeEeecCCeEEEEECCCC--ccceeEecCCCCcceEEEEEccC-CCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCc
Q 032092 1 MVVGTADRNLVVFNLQNP--QTEFKRINSPLKYQMRCVAAFPD-QQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGS 77 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~--~~~~~~~~~~~~~~i~~la~spd-g~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~ 77 (147)
|||++..|.|.+||+... ++....+. .|+-.+.++.|++- ..+|++|+.||+|++ ||.|..+...++.+.....
T Consensus 103 IAT~s~nG~i~vWdlnk~~rnk~l~~f~-EH~Rs~~~ldfh~tep~iliSGSQDg~vK~--~DlR~~~S~~t~~~nSESi 179 (839)
T KOG0269|consen 103 IATCSTNGVISVWDLNKSIRNKLLTVFN-EHERSANKLDFHSTEPNILISGSQDGTVKC--WDLRSKKSKSTFRSNSESI 179 (839)
T ss_pred heeecCCCcEEEEecCccccchhhhHhh-hhccceeeeeeccCCccEEEecCCCceEEE--Eeeecccccccccccchhh
Confidence 689999999999999883 22222232 35567999999996 678999999999999 7778777777787643321
Q ss_pred --eEEeeccceeeeecCCCcceeeeeee---eeeeeeeceEE----EEEecCCCeEEEeCCCCcEEEeecCCc
Q 032092 78 --ETCSVISFTSILAGDAPKYSSFYKVK---RLHLFVKSHVI----VLFVQIHHTFATAGSDGAFNFWDKDSK 141 (147)
Q Consensus 78 --~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~----~~fspdg~~latg~~Dg~i~iWd~~~~ 141 (147)
..+.+..-..++++.|.++.-.|++. +....+.+|++ |.|||++.+|||||.|+.|+|||..+.
T Consensus 180 RDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~ 252 (839)
T KOG0269|consen 180 RDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDS 252 (839)
T ss_pred hceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCC
Confidence 34455555667888888776666554 44556677753 799999999999999999999998754
No 42
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.68 E-value=1.5e-15 Score=115.86 Aligned_cols=142 Identities=15% Similarity=0.112 Sum_probs=104.2
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceE-
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSET- 79 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~- 79 (147)
|++++.|.+|+.||+.++-. ++++.. +...|+.++.+.||..+|+++.|.++++|-... +.-...++.|.....+
T Consensus 208 ilS~srD~tik~We~~tg~c-v~t~~~-h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t--~~~k~~lR~hEh~vEci 283 (406)
T KOG0295|consen 208 ILSCSRDNTIKAWECDTGYC-VKTFPG-HSEWVRMVRVNQDGTIIASCSNDQTLRVWVVAT--KQCKAELREHEHPVECI 283 (406)
T ss_pred eeecccccceeEEeccccee-EEeccC-chHhEEEEEecCCeeEEEecCCCceEEEEEecc--chhhhhhhccccceEEE
Confidence 57899999999999999864 566653 445799999999999999999999999955544 3333344445432111
Q ss_pred -E--------------eeccceeeeecCCCcceeeeee--eeeeeeeeceE----EEEEecCCCeEEEeCCCCcEEEeec
Q 032092 80 -C--------------SVISFTSILAGDAPKYSSFYKV--KRLHLFVKSHV----IVLFVQIHHTFATAGSDGAFNFWDK 138 (147)
Q Consensus 80 -~--------------~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~----~~~fspdg~~latg~~Dg~i~iWd~ 138 (147)
+ .-+....+.+++.|....+++. -.....+.||- .++|+|-|++|+++..|+++++||+
T Consensus 284 ~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl 363 (406)
T KOG0295|consen 284 AWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDL 363 (406)
T ss_pred EecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEe
Confidence 0 0112224555666655444543 45677788883 5999999999999999999999999
Q ss_pred CCceeeec
Q 032092 139 DSKQRLKV 146 (147)
Q Consensus 139 ~~~~~~~~ 146 (147)
+.++++++
T Consensus 364 ~~~~cmk~ 371 (406)
T KOG0295|consen 364 KNLQCMKT 371 (406)
T ss_pred ccceeeec
Confidence 99999886
No 43
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.68 E-value=1.2e-16 Score=126.28 Aligned_cols=111 Identities=18% Similarity=0.335 Sum_probs=80.7
Q ss_pred CeEeecCCeEEEEECCCCccceeEec----CCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCC--cceeEE-Eec
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRIN----SPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQ--SKNFTF-KCH 73 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~----~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~--~~~~~~-~~h 73 (147)
++|++.||++||||+.+.+...+.+. .+.+.++.+.+|+|||+.||+|..||.|.+ |+.+.. ++.+.. ..|
T Consensus 284 FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~--W~~~~~~v~p~~~vk~AH 361 (641)
T KOG0772|consen 284 FLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQI--WDKGSRTVRPVMKVKDAH 361 (641)
T ss_pred eEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceee--eecCCcccccceEeeecc
Confidence 47899999999999988653222221 233457899999999999999999999999 554421 222222 345
Q ss_pred cCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCC-ceeeec
Q 032092 74 RDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDS-KQRLKV 146 (147)
Q Consensus 74 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~-~~~~~~ 146 (147)
.... .+.++ +||+||++|+|-|.|+++++||++. +++|++
T Consensus 362 ~~g~---~Itsi------------------------------~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~ 402 (641)
T KOG0772|consen 362 LPGQ---DITSI------------------------------SFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNV 402 (641)
T ss_pred CCCC---ceeEE------------------------------EeccccchhhhccCCCceeeeeccccccchhh
Confidence 4321 24444 9999999999999999999999986 455554
No 44
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.2e-15 Score=114.19 Aligned_cols=111 Identities=12% Similarity=0.232 Sum_probs=86.4
Q ss_pred eEeecCCeEEEEECCCC-ccceeEecCC--CCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCce
Q 032092 2 VVGTADRNLVVFNLQNP-QTEFKRINSP--LKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE 78 (147)
Q Consensus 2 ~~gs~dg~v~iwdi~~~-~~~~~~~~~~--~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~ 78 (147)
|+|...+.|+|||+|.. +-|+.++.-. ...+.+.|.|||||++++.++..+.+.+ +|..+|..+.+|.++.+...
T Consensus 156 A~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~--lDAf~G~~~~tfs~~~~~~~ 233 (311)
T KOG1446|consen 156 ALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYL--LDAFDGTVKSTFSGYPNAGN 233 (311)
T ss_pred EEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEE--EEccCCcEeeeEeeccCCCC
Confidence 45555557888888775 3365554322 2345889999999999999999999999 99999999999988876421
Q ss_pred EEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092 79 TCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146 (147)
Q Consensus 79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~ 146 (147)
.+ - ++.|+||++++.+|+.||+|++|++++++.+..
T Consensus 234 -~~-~------------------------------~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~ 269 (311)
T KOG1446|consen 234 -LP-L------------------------------SATFTPDSKFVLSGSDDGTIHVWNLETGKKVAV 269 (311)
T ss_pred -cc-e------------------------------eEEECCCCcEEEEecCCCcEEEEEcCCCcEeeE
Confidence 11 1 239999999999999999999999999887654
No 45
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.67 E-value=5.7e-17 Score=126.96 Aligned_cols=108 Identities=16% Similarity=0.215 Sum_probs=91.4
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC 80 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~ 80 (147)
|++|+.|++|+|||+......+.++. +|..+|++++|+++|..|++++-|+.+++ ||+.+|+.+..|.. ..
T Consensus 230 lLS~gmD~~vklW~vy~~~~~lrtf~-gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl--wDtETG~~~~~f~~--~~---- 300 (503)
T KOG0282|consen 230 LLSGGMDGLVKLWNVYDDRRCLRTFK-GHRKPVRDASFNNCGTSFLSASFDRFLKL--WDTETGQVLSRFHL--DK---- 300 (503)
T ss_pred EEecCCCceEEEEEEecCcceehhhh-cchhhhhhhhccccCCeeeeeecceeeee--eccccceEEEEEec--CC----
Confidence 57899999999999998444455554 56678999999999999999999999999 89999998887753 21
Q ss_pred eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCC-CeEEEeCCCCcEEEeecCCceeeecC
Q 032092 81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIH-HTFATAGSDGAFNFWDKDSKQRLKVF 147 (147)
Q Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg-~~latg~~Dg~i~iWd~~~~~~~~~~ 147 (147)
.++.+ .|+||+ +.|++|++|+.|+.||+++++.+++|
T Consensus 301 ~~~cv------------------------------kf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeY 338 (503)
T KOG0282|consen 301 VPTCV------------------------------KFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEY 338 (503)
T ss_pred Cceee------------------------------ecCCCCCcEEEEecCCCcEEEEeccchHHHHHH
Confidence 35555 999998 99999999999999999999987764
No 46
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.67 E-value=3.1e-15 Score=127.42 Aligned_cols=136 Identities=14% Similarity=0.098 Sum_probs=96.6
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEc-cCCCEEEEEeeCCeEEEEeecCCCCc-ceeEEEeccCCce
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAF-PDQQGFWVGSIEGRVGVHHLDDSQQS-KNFTFKCHRDGSE 78 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~s-pdg~~l~~g~~dg~i~i~~~d~~~~~-~~~~~~~h~~~~~ 78 (147)
|++|+.||+|++||+++++. ...+.. ...+.+++|+ |+|..|++|+.||.|++ ||.++.+ ...++.+|.....
T Consensus 591 L~Sgs~Dg~v~iWd~~~~~~-~~~~~~--~~~v~~v~~~~~~g~~latgs~dg~I~i--wD~~~~~~~~~~~~~h~~~V~ 665 (793)
T PLN00181 591 LASGSDDGSVKLWSINQGVS-IGTIKT--KANICCVQFPSESGRSLAFGSADHKVYY--YDLRNPKLPLCTMIGHSKTVS 665 (793)
T ss_pred EEEEcCCCEEEEEECCCCcE-EEEEec--CCCeEEEEEeCCCCCEEEEEeCCCeEEE--EECCCCCccceEecCCCCCEE
Confidence 58999999999999998753 344432 2468999995 56999999999999999 6776544 4567778876432
Q ss_pred --EEeeccceeeeecCCCcceeeeee-------eeeeeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCCce
Q 032092 79 --TCSVISFTSILAGDAPKYSSFYKV-------KRLHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSKQ 142 (147)
Q Consensus 79 --~~~v~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~~ 142 (147)
.+. ..-.++++|.|..+++|... ......+.+| ..++|+|++++||+|+.|+.|++|+.....
T Consensus 666 ~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~ 741 (793)
T PLN00181 666 YVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPM 741 (793)
T ss_pred EEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCC
Confidence 222 33334555555555554421 1234456666 358999999999999999999999976543
No 47
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.67 E-value=3.8e-15 Score=126.87 Aligned_cols=135 Identities=17% Similarity=0.189 Sum_probs=93.6
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEcc-CCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCC-ce
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFP-DQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDG-SE 78 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~sp-dg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~-~~ 78 (147)
||+|+.||+|+|||+.+++. +..+. .|...|.+++|+| ++.+|++|+.||+|++ ||.+++....++..+..- ..
T Consensus 548 las~~~Dg~v~lWd~~~~~~-~~~~~-~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~i--Wd~~~~~~~~~~~~~~~v~~v 623 (793)
T PLN00181 548 VASSNFEGVVQVWDVARSQL-VTEMK-EHEKRVWSIDYSSADPTLLASGSDDGSVKL--WSINQGVSIGTIKTKANICCV 623 (793)
T ss_pred EEEEeCCCeEEEEECCCCeE-EEEec-CCCCCEEEEEEcCCCCCEEEEEcCCCEEEE--EECCCCcEEEEEecCCCeEEE
Confidence 57899999999999998753 34443 4666899999997 7899999999999999 677777777777654321 11
Q ss_pred EEeeccceeeeecCCCcceeeeeeee---eeeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCC
Q 032092 79 TCSVISFTSILAGDAPKYSSFYKVKR---LHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDS 140 (147)
Q Consensus 79 ~~~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~ 140 (147)
.+....-..+++|+.++....|++.. ....+.+| ..+.|. ++.+|+||+.|++|+|||+..
T Consensus 624 ~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~ 691 (793)
T PLN00181 624 QFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSM 691 (793)
T ss_pred EEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCC
Confidence 12112223455555554444443321 23345555 468886 678999999999999999874
No 48
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.67 E-value=5.6e-16 Score=120.34 Aligned_cols=102 Identities=21% Similarity=0.293 Sum_probs=81.0
Q ss_pred CeEeecCCeEEEEECCCC-ccceeEecCCCCcceEEEEEccC-CCEEEEEeeCCeEEEEeecCCC-CcceeEEEeccCCc
Q 032092 1 MVVGTADRNLVVFNLQNP-QTEFKRINSPLKYQMRCVAAFPD-QQGFWVGSIEGRVGVHHLDDSQ-QSKNFTFKCHRDGS 77 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~-~~~~~~~~~~~~~~i~~la~spd-g~~l~~g~~dg~i~i~~~d~~~-~~~~~~~~~h~~~~ 77 (147)
++++++|+.+.|||+|+. .++.+ ....|..++.|++|+|- +..||+|+.|++|+| ||+|+ .+++.++.+|..+
T Consensus 243 F~sv~dd~~L~iwD~R~~~~~~~~-~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~L--wDlRnL~~~lh~~e~H~de- 318 (422)
T KOG0264|consen 243 FGSVGDDGKLMIWDTRSNTSKPSH-SVKAHSAEVNCVAFNPFNEFILATGSADKTVAL--WDLRNLNKPLHTFEGHEDE- 318 (422)
T ss_pred heeecCCCeEEEEEcCCCCCCCcc-cccccCCceeEEEeCCCCCceEEeccCCCcEEE--eechhcccCceeccCCCcc-
Confidence 468899999999999963 23322 22356678999999995 567899999999999 88876 4567788888763
Q ss_pred eEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCC-CeEEEeCCCCcEEEeecCC
Q 032092 78 ETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIH-HTFATAGSDGAFNFWDKDS 140 (147)
Q Consensus 78 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg-~~latg~~Dg~i~iWd~~~ 140 (147)
+..+ .|+|.. ..||++|.|+.+.+||+..
T Consensus 319 ----v~~V------------------------------~WSPh~etvLASSg~D~rl~vWDls~ 348 (422)
T KOG0264|consen 319 ----VFQV------------------------------EWSPHNETVLASSGTDRRLNVWDLSR 348 (422)
T ss_pred ----eEEE------------------------------EeCCCCCceeEecccCCcEEEEeccc
Confidence 4444 999976 8999999999999999853
No 49
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.65 E-value=1.8e-15 Score=111.03 Aligned_cols=135 Identities=14% Similarity=0.228 Sum_probs=90.1
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccC-CceE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRD-GSET 79 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~-~~~~ 79 (147)
+++.++|++||+||.+++. .++++.. +.+|+++.+++||+++.++.. +.|.. ||+.+...+..++...+ ....
T Consensus 158 iLSSadd~tVRLWD~rTgt-~v~sL~~--~s~VtSlEvs~dG~ilTia~g-ssV~F--wdaksf~~lKs~k~P~nV~SAS 231 (334)
T KOG0278|consen 158 ILSSADDKTVRLWDHRTGT-EVQSLEF--NSPVTSLEVSQDGRILTIAYG-SSVKF--WDAKSFGLLKSYKMPCNVESAS 231 (334)
T ss_pred EEeeccCCceEEEEeccCc-EEEEEec--CCCCcceeeccCCCEEEEecC-ceeEE--eccccccceeeccCcccccccc
Confidence 3567899999999999996 4666653 357999999999998877554 56766 88877666655543222 1111
Q ss_pred EeeccceeeeecCCCcc-eee-eee-eeeeeeeeceE----EEEEecCCCeEEEeCCCCcEEEeecCCce
Q 032092 80 CSVISFTSILAGDAPKY-SSF-YKV-KRLHLFVKSHV----IVLFVQIHHTFATAGSDGAFNFWDKDSKQ 142 (147)
Q Consensus 80 ~~v~~~~~~~~~~~~~~-~~~-~~~-~~~~~~~~~~~----~~~fspdg~~latg~~Dg~i~iWd~~~~~ 142 (147)
+.+.. -.+..|.++.. ..| ++. +..-.+++||. .+.|+|||...|+|+.||+|+||.+.-++
T Consensus 232 L~P~k-~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 232 LHPKK-EFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred ccCCC-ceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 22333 34556666642 222 221 12222356764 58999999999999999999999876543
No 50
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.65 E-value=1.9e-14 Score=104.73 Aligned_cols=142 Identities=15% Similarity=0.184 Sum_probs=98.4
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC 80 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~ 80 (147)
|++|+.||.|++||+.+++. ..... .+..++..+.|+|+++.+++++.||.|++ ||..+++....+..|.......
T Consensus 24 l~~~~~~g~i~i~~~~~~~~-~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i--~~~~~~~~~~~~~~~~~~i~~~ 99 (289)
T cd00200 24 LATGSGDGTIKVWDLETGEL-LRTLK-GHTGPVRDVAASADGTYLASGSSDKTIRL--WDLETGECVRTLTGHTSYVSSV 99 (289)
T ss_pred EEEeecCcEEEEEEeeCCCc-EEEEe-cCCcceeEEEECCCCCEEEEEcCCCeEEE--EEcCcccceEEEeccCCcEEEE
Confidence 57888899999999998753 23332 34456889999999999999999999999 6666666777777776433222
Q ss_pred eecc-ceeeeecC-CCcceeeeee-eeeeeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092 81 SVIS-FTSILAGD-APKYSSFYKV-KRLHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146 (147)
Q Consensus 81 ~v~~-~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~ 146 (147)
.... -.++++++ +..+..+... .+....+..| ..++|+|+++++++++.|+.|++||+++++.+..
T Consensus 100 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~ 172 (289)
T cd00200 100 AFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVAT 172 (289)
T ss_pred EEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccccccee
Confidence 2222 12445555 4444443321 2223333333 5689999999999998899999999987776554
No 51
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.65 E-value=1.1e-16 Score=123.42 Aligned_cols=107 Identities=19% Similarity=0.239 Sum_probs=89.1
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC 80 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~ 80 (147)
|++|..+|.|+.|+..... ++.+..++..+|+++||||+...|++++.||+|+| ||.+..+....+.+|. +
T Consensus 153 miSgD~gG~iKyWqpnmnn--Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~iki--Wdf~~~kee~vL~GHg-----w 223 (464)
T KOG0284|consen 153 MISGDKGGMIKYWQPNMNN--VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKI--WDFRMPKEERVLRGHG-----W 223 (464)
T ss_pred EEEcCCCceEEecccchhh--hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEE--EeccCCchhheeccCC-----C
Confidence 5789999999999998753 34444445568999999999999999999999999 6666566666677775 3
Q ss_pred eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092 81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146 (147)
Q Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~ 146 (147)
.|.++ +|||.-.++|+||-|..|++||.+++++|-+
T Consensus 224 dVksv------------------------------dWHP~kgLiasgskDnlVKlWDprSg~cl~t 259 (464)
T KOG0284|consen 224 DVKSV------------------------------DWHPTKGLIASGSKDNLVKLWDPRSGSCLAT 259 (464)
T ss_pred Cccee------------------------------ccCCccceeEEccCCceeEeecCCCcchhhh
Confidence 56676 9999999999999999999999999998754
No 52
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.65 E-value=2.2e-14 Score=104.39 Aligned_cols=142 Identities=16% Similarity=0.209 Sum_probs=98.7
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC 80 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~ 80 (147)
|++++.||.|++||+.+++. ...+. .+..++.+++|+|+++.+++++.||.+.+ ||.++++....+..|.......
T Consensus 66 l~~~~~~~~i~i~~~~~~~~-~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~~~~i~~~ 141 (289)
T cd00200 66 LASGSSDKTIRLWDLETGEC-VRTLT-GHTSYVSSVAFSPDGRILSSSSRDKTIKV--WDVETGKCLTTLRGHTDWVNSV 141 (289)
T ss_pred EEEEcCCCeEEEEEcCcccc-eEEEe-ccCCcEEEEEEcCCCCEEEEecCCCeEEE--EECCCcEEEEEeccCCCcEEEE
Confidence 57888899999999998643 33333 34457999999999888888888999999 7776677777777776433222
Q ss_pred eecc-ceeeeecCCC-cceeeeee-eeeeeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092 81 SVIS-FTSILAGDAP-KYSSFYKV-KRLHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146 (147)
Q Consensus 81 ~v~~-~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~ 146 (147)
.... -.+++++..+ .+..+..- .+....+..| ..++|+|+++.+++++.|+.|++||+++++.+.+
T Consensus 142 ~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~ 214 (289)
T cd00200 142 AFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGT 214 (289)
T ss_pred EEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecc
Confidence 2222 2345555534 44433311 2223334344 4689999999999999999999999988777654
No 53
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.64 E-value=3.1e-15 Score=108.94 Aligned_cols=143 Identities=15% Similarity=0.204 Sum_probs=103.2
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC 80 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~ 80 (147)
+++|+.|+.|++||+.++++. .++. .|..+|+.++|+.+...+++|+.|.++++||-..++.++++.+..-+.....-
T Consensus 74 f~s~GgDk~v~vwDV~TGkv~-Rr~r-gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si 151 (307)
T KOG0316|consen 74 FASCGGDKAVQVWDVNTGKVD-RRFR-GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSI 151 (307)
T ss_pred cccCCCCceEEEEEcccCeee-eecc-cccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEE
Confidence 578999999999999999753 4443 46678999999999999999999999999544444556666665444332222
Q ss_pred eeccceeeeecCCC-cceeeeeeeeeee--ee--eceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092 81 SVISFTSILAGDAP-KYSSFYKVKRLHL--FV--KSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF 147 (147)
Q Consensus 81 ~v~~~~~~~~~~~~-~~~~~~~~~~~~~--~~--~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~ 147 (147)
.++. -.|++|+-| +++.+. +....+ -. ...++++|+||++..+.++.|+++++-|-++|++++.|
T Consensus 152 ~v~~-heIvaGS~DGtvRtyd-iR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sY 221 (307)
T KOG0316|consen 152 DVAE-HEIVAGSVDGTVRTYD-IRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSY 221 (307)
T ss_pred Eecc-cEEEeeccCCcEEEEE-eecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHh
Confidence 2333 235666666 455544 322222 11 33478999999999999999999999999999998765
No 54
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.63 E-value=9.3e-16 Score=119.12 Aligned_cols=110 Identities=21% Similarity=0.326 Sum_probs=84.3
Q ss_pred CeEeecCCeEEEEECCCCccc-----eeEecCCCCcceEEEEEccC-CCEEEEEeeCCeEEEEeecCCC--CcceeEEEe
Q 032092 1 MVVGTADRNLVVFNLQNPQTE-----FKRINSPLKYQMRCVAAFPD-QQGFWVGSIEGRVGVHHLDDSQ--QSKNFTFKC 72 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~-----~~~~~~~~~~~i~~la~spd-g~~l~~g~~dg~i~i~~~d~~~--~~~~~~~~~ 72 (147)
|++|+.|++|++||+...... .+.+...|...|..++|+|- .+.|++.+.|+.+.| ||+|+ .+.....++
T Consensus 193 Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~i--wD~R~~~~~~~~~~~a 270 (422)
T KOG0264|consen 193 LLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMI--WDTRSNTSKPSHSVKA 270 (422)
T ss_pred EeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEE--EEcCCCCCCCcccccc
Confidence 688999999999999875431 12233356667999999995 568999999999999 88884 344444455
Q ss_pred ccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecC-CCeEEEeCCCCcEEEeecCC-ceeeecC
Q 032092 73 HRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQI-HHTFATAGSDGAFNFWDKDS-KQRLKVF 147 (147)
Q Consensus 73 h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspd-g~~latg~~Dg~i~iWd~~~-~~~~~~~ 147 (147)
|.. .++++ +|+|- +..|||||+|++|++||+++ .+++++|
T Consensus 271 h~~-----~vn~~------------------------------~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~ 312 (422)
T KOG0264|consen 271 HSA-----EVNCV------------------------------AFNPFNEFILATGSADKTVALWDLRNLNKPLHTF 312 (422)
T ss_pred cCC-----ceeEE------------------------------EeCCCCCceEEeccCCCcEEEeechhcccCceec
Confidence 554 46776 99995 58999999999999999987 4556654
No 55
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.63 E-value=6.2e-16 Score=117.86 Aligned_cols=137 Identities=14% Similarity=0.150 Sum_probs=88.1
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC 80 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~ 80 (147)
+++|..|++|+|||.++.+.. + +..+|.++|.|+.|. .+.+++|++|.+|++ ||..+++++.++-+|.......
T Consensus 210 iVSGlrDnTikiWD~n~~~c~-~-~L~GHtGSVLCLqyd--~rviisGSSDsTvrv--WDv~tge~l~tlihHceaVLhl 283 (499)
T KOG0281|consen 210 IVSGLRDNTIKIWDKNSLECL-K-ILTGHTGSVLCLQYD--ERVIVSGSSDSTVRV--WDVNTGEPLNTLIHHCEAVLHL 283 (499)
T ss_pred hhcccccCceEEeccccHHHH-H-hhhcCCCcEEeeecc--ceEEEecCCCceEEE--EeccCCchhhHHhhhcceeEEE
Confidence 578999999999999987643 2 334677789999875 579999999999999 5556688888888887665444
Q ss_pred eeccceeeeecCCCcceeeeeeeee----eeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCCceeee
Q 032092 81 SVISFTSILAGDAPKYSSFYKVKRL----HLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLK 145 (147)
Q Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~ 145 (147)
.++.-.+++.+.|..+.++.-.... -.++-|| +.+.| |.++++|+++|.+|++|++.+.++++
T Consensus 284 rf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf--d~kyIVsASgDRTikvW~~st~efvR 354 (499)
T KOG0281|consen 284 RFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTCEFVR 354 (499)
T ss_pred EEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecc--ccceEEEecCCceEEEEeccceeeeh
Confidence 4444455666666655444321111 1123344 23343 22455666666666666655555544
No 56
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.63 E-value=3.3e-15 Score=121.93 Aligned_cols=139 Identities=17% Similarity=0.261 Sum_probs=107.2
Q ss_pred eEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEe
Q 032092 2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCS 81 (147)
Q Consensus 2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~ 81 (147)
++|+.|.+|++||+.+++. .+.+. +|..+|+++.++ +..+++|+.||+|++ ||+++++.+.++++|........
T Consensus 305 ~sgs~D~tVkVW~v~n~~~-l~l~~-~h~~~V~~v~~~--~~~lvsgs~d~~v~V--W~~~~~~cl~sl~gH~~~V~sl~ 378 (537)
T KOG0274|consen 305 VSGSRDNTVKVWDVTNGAC-LNLLR-GHTGPVNCVQLD--EPLLVSGSYDGTVKV--WDPRTGKCLKSLSGHTGRVYSLI 378 (537)
T ss_pred eeccCCceEEEEeccCcce-EEEec-cccccEEEEEec--CCEEEEEecCceEEE--EEhhhceeeeeecCCcceEEEEE
Confidence 4678999999999998864 34443 377899999988 899999999999999 88888999999999998655444
Q ss_pred eccceeeeecCCCc-ceeeeeee--eeeeeeeceEEEE--EecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092 82 VISFTSILAGDAPK-YSSFYKVK--RLHLFVKSHVIVL--FVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146 (147)
Q Consensus 82 v~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~--fspdg~~latg~~Dg~i~iWd~~~~~~~~~ 146 (147)
+.....+.+|+-|+ ++++.... +....+++|.++. ....++.|.+++.|++|++||.++++++++
T Consensus 379 ~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~ 448 (537)
T KOG0274|consen 379 VDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGECLRT 448 (537)
T ss_pred ecCcceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccccceeEeccccccEEEeecccCceeee
Confidence 44423455555554 55544222 4566788887654 355789999999999999999999998875
No 57
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.62 E-value=6.8e-15 Score=112.38 Aligned_cols=138 Identities=14% Similarity=0.208 Sum_probs=106.3
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC 80 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~ 80 (147)
|++|+.|.++|+||+|+.. .+..+. +|+.+|.++.+.|-..++++||.|++|++ ||.+.|+...++..|+....+.
T Consensus 250 l~t~grDst~RvWDiRtr~-~V~~l~-GH~~~V~~V~~~~~dpqvit~S~D~tvrl--WDl~agkt~~tlt~hkksvral 325 (460)
T KOG0285|consen 250 LVTGGRDSTIRVWDIRTRA-SVHVLS-GHTNPVASVMCQPTDPQVITGSHDSTVRL--WDLRAGKTMITLTHHKKSVRAL 325 (460)
T ss_pred EEecCCcceEEEeeecccc-eEEEec-CCCCcceeEEeecCCCceEEecCCceEEE--eeeccCceeEeeecccceeeEE
Confidence 6899999999999999975 355553 57789999999998889999999999999 8889999999998887654433
Q ss_pred eec-cceeeeecCCCcceeeeeeeee-eeeeeceE----EEEEecCCCeEEEeCCCCcEEEeecCCcee
Q 032092 81 SVI-SFTSILAGDAPKYSSFYKVKRL-HLFVKSHV----IVLFVQIHHTFATAGSDGAFNFWDKDSKQR 143 (147)
Q Consensus 81 ~v~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~fspdg~~latg~~Dg~i~iWd~~~~~~ 143 (147)
... ...++++++.+.++-+...+.. ...+.+|+ .++.+.|| ++.+|+.+|.+.+||.+++-.
T Consensus 326 ~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~n 393 (460)
T KOG0285|consen 326 CLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHN 393 (460)
T ss_pred ecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcc
Confidence 333 2235677888877766633322 33467774 46777775 788999999999999998754
No 58
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.62 E-value=1.7e-14 Score=114.44 Aligned_cols=140 Identities=14% Similarity=0.153 Sum_probs=99.9
Q ss_pred CeEeecCCeEEEEECCCCccceeEec--CCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccC--C
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRIN--SPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRD--G 76 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~--~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~--~ 76 (147)
+|+++.||+|.|||=.++++ +..+. .+|+..|.+|+|+||++.|++.+.|.+++| ||..+++.+.++..-.. .
T Consensus 205 Fat~gsDgki~iyDGktge~-vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KI--WdVs~~slv~t~~~~~~v~d 281 (603)
T KOG0318|consen 205 FATAGSDGKIYIYDGKTGEK-VGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKI--WDVSTNSLVSTWPMGSTVED 281 (603)
T ss_pred EEEecCCccEEEEcCCCccE-EEEecCCCCccccEEEEEECCCCceEEEecCCceEEE--EEeeccceEEEeecCCchhc
Confidence 47899999999999999986 34444 367889999999999999999999999999 67777777777764332 1
Q ss_pred ceEEeec-cceeeeecCCCcceeeeee-eeeeeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCCcee
Q 032092 77 SETCSVI-SFTSILAGDAPKYSSFYKV-KRLHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSKQR 143 (147)
Q Consensus 77 ~~~~~v~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~~~ 143 (147)
.....+. ..-+++.+-...+..+..- -.+...+.|| ..++.+||+++|.||+.||.|.=||..++..
T Consensus 282 qqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~ 354 (603)
T KOG0318|consen 282 QQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTS 354 (603)
T ss_pred eEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccc
Confidence 1111111 1123333433333333311 1245566777 4699999999999999999999999987643
No 59
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.62 E-value=2.5e-15 Score=116.81 Aligned_cols=110 Identities=20% Similarity=0.265 Sum_probs=91.7
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC 80 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~ 80 (147)
|++++.||+....|++++.+............+++.+|+|||..|++|+.||.++| ||+.++.....|.+|..
T Consensus 318 llsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vki--wdlks~~~~a~Fpght~----- 390 (506)
T KOG0289|consen 318 LLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKI--WDLKSQTNVAKFPGHTG----- 390 (506)
T ss_pred EEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEE--EEcCCccccccCCCCCC-----
Confidence 46889999999999999976432222122345899999999999999999999999 88888888888998875
Q ss_pred eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092 81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF 147 (147)
Q Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~ 147 (147)
++.++ +|+-+|-+||++..|+.|++||+++.+-+++|
T Consensus 391 ~vk~i------------------------------~FsENGY~Lat~add~~V~lwDLRKl~n~kt~ 427 (506)
T KOG0289|consen 391 PVKAI------------------------------SFSENGYWLATAADDGSVKLWDLRKLKNFKTI 427 (506)
T ss_pred ceeEE------------------------------EeccCceEEEEEecCCeEEEEEehhhccccee
Confidence 57777 99999999999999999999999987766654
No 60
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=8.3e-15 Score=121.93 Aligned_cols=145 Identities=14% Similarity=0.267 Sum_probs=101.0
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecC-CC-----C--------c-
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDD-SQ-----Q--------S- 65 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~-~~-----~--------~- 65 (147)
|++||+|.+|+|||.++.+. +... .+|..-|.|-+|+|..+.++++|.|.+|++||+.- +. + .
T Consensus 108 IlSASDDQTIrIWNwqsr~~-iavl-tGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~ 185 (1202)
T KOG0292|consen 108 ILSASDDQTIRIWNWQSRKC-IAVL-TGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQ 185 (1202)
T ss_pred EEEccCCCeEEEEeccCCce-EEEE-ecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccc
Confidence 57899999999999999864 4444 35677799999999999999999999999954421 10 0 0
Q ss_pred ------------ceeEEEeccCCceEEee-ccceeeeecCCCc-ceeeeeeeee---eeeeece----EEEEEecCCCeE
Q 032092 66 ------------KNFTFKCHRDGSETCSV-ISFTSILAGDAPK-YSSFYKVKRL---HLFVKSH----VIVLFVQIHHTF 124 (147)
Q Consensus 66 ------------~~~~~~~h~~~~~~~~v-~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~----~~~~fspdg~~l 124 (147)
..+.+.||.....-.+. ..+.++.+|+||. +..|+--+.- .-+..|| .++-|||...++
T Consensus 186 ~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lI 265 (1202)
T KOG0292|consen 186 GNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLI 265 (1202)
T ss_pred cchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCcccee
Confidence 01123445432110111 1345678888884 3333322221 2245666 479999999999
Q ss_pred EEeCCCCcEEEeecCCceeeecC
Q 032092 125 ATAGSDGAFNFWDKDSKQRLKVF 147 (147)
Q Consensus 125 atg~~Dg~i~iWd~~~~~~~~~~ 147 (147)
+|.|.|++|+|||+++++.+++|
T Consensus 266 lSnsEDksirVwDm~kRt~v~tf 288 (1202)
T KOG0292|consen 266 LSNSEDKSIRVWDMTKRTSVQTF 288 (1202)
T ss_pred EecCCCccEEEEecccccceeee
Confidence 99999999999999999999887
No 61
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.62 E-value=1.1e-15 Score=116.42 Aligned_cols=141 Identities=11% Similarity=0.145 Sum_probs=103.1
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCC-cceeEEEeccCCceE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQ-SKNFTFKCHRDGSET 79 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~-~~~~~~~~h~~~~~~ 79 (147)
|++|+.|.+|++||+++++ +++++- +|-..|.-+.|+ ..++++++.|.+|++|+++..+. .....+.||+.....
T Consensus 250 iisGSSDsTvrvWDv~tge-~l~tli-hHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNv 325 (499)
T KOG0281|consen 250 IVSGSSDSTVRVWDVNTGE-PLNTLI-HHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNV 325 (499)
T ss_pred EEecCCCceEEEEeccCCc-hhhHHh-hhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheee
Confidence 5799999999999999996 455443 455568889987 57999999999999976665431 223456788865332
Q ss_pred EeeccceeeeecCCCcceeeee-eeeeeeeeeceEE-EEEec-CCCeEEEeCCCCcEEEeecCCceeee
Q 032092 80 CSVISFTSILAGDAPKYSSFYK-VKRLHLFVKSHVI-VLFVQ-IHHTFATAGSDGAFNFWDKDSKQRLK 145 (147)
Q Consensus 80 ~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~fsp-dg~~latg~~Dg~i~iWd~~~~~~~~ 145 (147)
-...+-.++++++|-+++++.- .-.....++||-+ +|.-. .|+++++|++|.+|++||++.|++++
T Consensus 326 Vdfd~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLR 394 (499)
T KOG0281|consen 326 VDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLR 394 (499)
T ss_pred eccccceEEEecCCceEEEEeccceeeehhhhcccccceehhccCeEEEecCCCceEEEEeccccHHHH
Confidence 2334446677888888877663 2244667788853 44433 56999999999999999999998875
No 62
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.62 E-value=5.8e-15 Score=120.53 Aligned_cols=136 Identities=19% Similarity=0.221 Sum_probs=103.6
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCce--
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE-- 78 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~-- 78 (147)
+||||.|++.+||++.+.+ ....+ ++|+..|.|+.|+|..+.+|++|.|++|+| |.+.+..-+.+|.||+....
T Consensus 478 iAT~SqDktaKiW~le~~~-l~~vL-sGH~RGvw~V~Fs~~dq~laT~SgD~TvKI--W~is~fSClkT~eGH~~aVlra 553 (775)
T KOG0319|consen 478 IATGSQDKTAKIWDLEQLR-LLGVL-SGHTRGVWCVSFSKNDQLLATCSGDKTVKI--WSISTFSCLKTFEGHTSAVLRA 553 (775)
T ss_pred EEecccccceeeecccCce-EEEEe-eCCccceEEEEeccccceeEeccCCceEEE--EEeccceeeeeecCccceeEee
Confidence 5899999999999999654 33444 467778999999999999999999999999 66666788999999987642
Q ss_pred EEeeccceeeeecCCCcceeee-eeeeeeeeeeceE----EEEEecCCCeEEEeCCCCcEEEeecCC
Q 032092 79 TCSVISFTSILAGDAPKYSSFY-KVKRLHLFVKSHV----IVLFVQIHHTFATAGSDGAFNFWDKDS 140 (147)
Q Consensus 79 ~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~fspdg~~latg~~Dg~i~iWd~~~ 140 (147)
.|.-+.-.++++|++..+.+|. +.+.....+.+|+ +++-+|...+++||++||.|.+|.-.+
T Consensus 554 ~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 554 SFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred eeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 3333333345556655555554 2234466788886 477889989999999999999997533
No 63
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.60 E-value=5.1e-15 Score=121.84 Aligned_cols=105 Identities=15% Similarity=0.223 Sum_probs=81.0
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEcc-CCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFP-DQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSET 79 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~sp-dg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~ 79 (147)
|++++.|++||||++.+.+. .+.+. |..-|+||+|+| |.++|++|+.||.|+| |++...+...-...+.
T Consensus 383 LLSSSMDKTVRLWh~~~~~C-L~~F~--HndfVTcVaFnPvDDryFiSGSLD~KvRi--WsI~d~~Vv~W~Dl~~----- 452 (712)
T KOG0283|consen 383 LLSSSMDKTVRLWHPGRKEC-LKVFS--HNDFVTCVAFNPVDDRYFISGSLDGKVRL--WSISDKKVVDWNDLRD----- 452 (712)
T ss_pred eEeccccccEEeecCCCcce-eeEEe--cCCeeEEEEecccCCCcEeecccccceEE--eecCcCeeEeehhhhh-----
Confidence 68899999999999998765 35553 444599999999 6889999999999999 6665333322222221
Q ss_pred EeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092 80 CSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146 (147)
Q Consensus 80 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~ 146 (147)
.|+++ +|+|||+..+.|+.+|.+++|++...+...+
T Consensus 453 -lITAv------------------------------cy~PdGk~avIGt~~G~C~fY~t~~lk~~~~ 488 (712)
T KOG0283|consen 453 -LITAV------------------------------CYSPDGKGAVIGTFNGYCRFYDTEGLKLVSD 488 (712)
T ss_pred -hheeE------------------------------EeccCCceEEEEEeccEEEEEEccCCeEEEe
Confidence 24555 9999999999999999999999987776543
No 64
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=4.6e-15 Score=123.42 Aligned_cols=136 Identities=15% Similarity=0.148 Sum_probs=103.2
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceE-
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSET- 79 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~- 79 (147)
++++-..|.|++||-|-+. .+.++. .|.+||+.|+|+|++..|++|++|-+|++|+++ +.+.++++.||-.....
T Consensus 24 ILtslHsG~IQlWDYRM~t-li~rFd-eHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk--~rrclftL~GHlDYVRt~ 99 (1202)
T KOG0292|consen 24 ILTSLHSGVIQLWDYRMGT-LIDRFD-EHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK--TRRCLFTLLGHLDYVRTV 99 (1202)
T ss_pred EEEeecCceeeeehhhhhh-HHhhhh-ccCCccceeeecCCCCeEEecCCccEEEEEecc--cceehhhhccccceeEEe
Confidence 3577789999999999885 455554 477899999999999999999999999996555 45788899999764211
Q ss_pred -EeeccceeeeecCCCcceeeeee-eeeeeeeeceEE----EEEecCCCeEEEeCCCCcEEEeecCC
Q 032092 80 -CSVISFTSILAGDAPKYSSFYKV-KRLHLFVKSHVI----VLFVQIHHTFATAGSDGAFNFWDKDS 140 (147)
Q Consensus 80 -~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~fspdg~~latg~~Dg~i~iWd~~~ 140 (147)
+--.--+++++|+|-++++|.=. ......+.||+. ..|||..-.++|||-|.+||+||+.-
T Consensus 100 ~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisG 166 (1202)
T KOG0292|consen 100 FFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISG 166 (1202)
T ss_pred eccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecc
Confidence 11111144555666677776633 345667888864 58999889999999999999999854
No 65
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=2.5e-14 Score=105.09 Aligned_cols=136 Identities=15% Similarity=0.216 Sum_probs=97.5
Q ss_pred eEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccC-CCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092 2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPD-QQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC 80 (147)
Q Consensus 2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spd-g~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~ 80 (147)
+++|.|++|+|||...++. +.++. ++..-|...+|||. ++.|++.|.||+++|||++.. |+.+. +..|..+..++
T Consensus 121 ltsSWD~TiKLW~~~r~~S-v~Tf~-gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~-gk~~~-i~ah~~Eil~c 196 (311)
T KOG0277|consen 121 LTSSWDGTIKLWDPNRPNS-VQTFN-GHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP-GKFMS-IEAHNSEILCC 196 (311)
T ss_pred EeeccCCceEeecCCCCcc-eEeec-CCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC-CceeE-EEeccceeEee
Confidence 5779999999999998864 45554 35566999999995 889999999999999555443 55544 77887554433
Q ss_pred eec--cceeeeecCCC-ccee--eeeeeeeeeeeece----EEEEEecCC-CeEEEeCCCCcEEEeecCCc
Q 032092 81 SVI--SFTSILAGDAP-KYSS--FYKVKRLHLFVKSH----VIVLFVQIH-HTFATAGSDGAFNFWDKDSK 141 (147)
Q Consensus 81 ~v~--~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~----~~~~fspdg-~~latg~~Dg~i~iWd~~~~ 141 (147)
.-+ .-.++..|+.+ .++. .+++......++|| -++.|||-. ..|||++.|-++||||.+..
T Consensus 197 dw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ 267 (311)
T KOG0277|consen 197 DWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQ 267 (311)
T ss_pred cccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccc
Confidence 222 22334445555 4433 33555555567777 369999976 89999999999999998743
No 66
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=1.3e-15 Score=124.11 Aligned_cols=108 Identities=19% Similarity=0.306 Sum_probs=91.6
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC 80 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~ 80 (147)
|++|+.+|+|++||+.+.+ .++++. .|...+.+|+|+|-+.++|.|+.|+.+.+ ||.+..-..+++.+|..
T Consensus 85 laagsasgtiK~wDleeAk-~vrtLt-gh~~~~~sv~f~P~~~~~a~gStdtd~~i--wD~Rk~Gc~~~~~s~~~----- 155 (825)
T KOG0267|consen 85 LAAGSASGTIKVWDLEEAK-IVRTLT-GHLLNITSVDFHPYGEFFASGSTDTDLKI--WDIRKKGCSHTYKSHTR----- 155 (825)
T ss_pred hcccccCCceeeeehhhhh-hhhhhh-ccccCcceeeeccceEEecccccccccee--hhhhccCceeeecCCcc-----
Confidence 5788999999999999875 355443 35557899999999999999999999999 88886566778887764
Q ss_pred eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092 81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF 147 (147)
Q Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~ 147 (147)
.++.+ .|+|+|++++.|+.|.+++|||+.-|+.+++|
T Consensus 156 vv~~l------------------------------~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef 192 (825)
T KOG0267|consen 156 VVDVL------------------------------RLSPDGRWVASGGEDNTVKIWDLTAGKLSKEF 192 (825)
T ss_pred eeEEE------------------------------eecCCCceeeccCCcceeeeeccccccccccc
Confidence 45555 99999999999999999999999999988776
No 67
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=1.6e-13 Score=101.56 Aligned_cols=137 Identities=11% Similarity=0.140 Sum_probs=102.2
Q ss_pred CeEeecCCeEEEEECCCCcc-ceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCC-CCcceeEEEeccCC--
Q 032092 1 MVVGTADRNLVVFNLQNPQT-EFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDS-QQSKNFTFKCHRDG-- 76 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~-~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~-~~~~~~~~~~h~~~-- 76 (147)
||+||-|.++.||--..++- .+..++ +|+.+|.|++||++|++||+++.|..+-||..|-. +......++.|...
T Consensus 76 La~aSFD~t~~Iw~k~~~efecv~~lE-GHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK 154 (312)
T KOG0645|consen 76 LASASFDATVVIWKKEDGEFECVATLE-GHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVK 154 (312)
T ss_pred EEEeeccceEEEeecCCCceeEEeeee-ccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccccccc
Confidence 68999999999998876531 233444 56778999999999999999999999988555521 12334566778764
Q ss_pred ceEEeeccceeeeecCCCcceeeeeee----eeeeeeeceE----EEEEecCCCeEEEeCCCCcEEEeec
Q 032092 77 SETCSVISFTSILAGDAPKYSSFYKVK----RLHLFVKSHV----IVLFVQIHHTFATAGSDGAFNFWDK 138 (147)
Q Consensus 77 ~~~~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~----~~~fspdg~~latg~~Dg~i~iWd~ 138 (147)
...+-++...+++.|=|+.+++++... ...+.+.+|. +++|+|.|..|++++.|++++||-.
T Consensus 155 ~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~ 224 (312)
T KOG0645|consen 155 HVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRL 224 (312)
T ss_pred EEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeee
Confidence 234545544456667777888877552 3466788884 6899999999999999999999983
No 68
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=7.2e-15 Score=117.54 Aligned_cols=108 Identities=19% Similarity=0.310 Sum_probs=90.5
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC 80 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~ 80 (147)
|.+|+.|+.|..+|++..+..+. ....|..+|-.++|++|+++||+|+.|+.+.| ||.....++.++..|+.
T Consensus 273 lssGsr~~~I~~~dvR~~~~~~~-~~~~H~qeVCgLkws~d~~~lASGgnDN~~~I--wd~~~~~p~~~~~~H~a----- 344 (484)
T KOG0305|consen 273 LSSGSRDGKILNHDVRISQHVVS-TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFI--WDGLSPEPKFTFTEHTA----- 344 (484)
T ss_pred EEEecCCCcEEEEEEecchhhhh-hhhcccceeeeeEECCCCCeeccCCCccceEe--ccCCCccccEEEeccce-----
Confidence 46889999999999999865443 23356678999999999999999999999999 77776778888888886
Q ss_pred eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecC-CCeEEEeCC--CCcEEEeecCCceeeec
Q 032092 81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQI-HHTFATAGS--DGAFNFWDKDSKQRLKV 146 (147)
Q Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspd-g~~latg~~--Dg~i~iWd~~~~~~~~~ 146 (147)
+|-++ +|+|- ..+||+||+ |+.|++||..+++++..
T Consensus 345 AVKA~------------------------------awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~ 383 (484)
T KOG0305|consen 345 AVKAL------------------------------AWCPWQSGLLATGGGSADRCIKFWNTNTGARIDS 383 (484)
T ss_pred eeeEe------------------------------eeCCCccCceEEcCCCcccEEEEEEcCCCcEecc
Confidence 36666 99995 589999987 99999999999988753
No 69
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.58 E-value=6.3e-14 Score=104.81 Aligned_cols=143 Identities=14% Similarity=0.120 Sum_probs=106.9
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC 80 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~ 80 (147)
+|+|+.|..|.||++-...+-+-.+ ..|+..|..+.|++|+..+++++.|.+++. ||.++|+..+.+++|.......
T Consensus 62 ~aSgG~Dr~I~LWnv~gdceN~~~l-kgHsgAVM~l~~~~d~s~i~S~gtDk~v~~--wD~~tG~~~rk~k~h~~~vNs~ 138 (338)
T KOG0265|consen 62 FASGGSDRAIVLWNVYGDCENFWVL-KGHSGAVMELHGMRDGSHILSCGTDKTVRG--WDAETGKRIRKHKGHTSFVNSL 138 (338)
T ss_pred EeecCCcceEEEEeccccccceeee-ccccceeEeeeeccCCCEEEEecCCceEEE--Eecccceeeehhccccceeeec
Confidence 5899999999999987654333333 357778999999999999999999999999 8989999999999998643222
Q ss_pred eec--cceeeeecCCCc-ceeeeeeeee-eeee---eceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092 81 SVI--SFTSILAGDAPK-YSSFYKVKRL-HLFV---KSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146 (147)
Q Consensus 81 ~v~--~~~~~~~~~~~~-~~~~~~~~~~-~~~~---~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~ 146 (147)
.+. ...++.+|+||. ++++.-=++. ...+ ...+++.|..++..+.+|+-|+.|++||++....+++
T Consensus 139 ~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~ 211 (338)
T KOG0265|consen 139 DPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYT 211 (338)
T ss_pred CccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEE
Confidence 222 234677778775 4444322122 1122 2346789999998899999999999999988877764
No 70
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.58 E-value=1.9e-14 Score=107.75 Aligned_cols=108 Identities=16% Similarity=0.223 Sum_probs=80.3
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC 80 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~ 80 (147)
|+.||.||+||+|+++...+...+-...+..||.+++|+.||..+.+|+.|+++++ ||+.+++. ..+..|..
T Consensus 43 ~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~--wDL~S~Q~-~~v~~Hd~----- 114 (347)
T KOG0647|consen 43 LAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKL--WDLASGQV-SQVAAHDA----- 114 (347)
T ss_pred EEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEE--EEccCCCe-eeeeeccc-----
Confidence 35789999999999998322222222235578999999999999999999999999 78877643 45556764
Q ss_pred eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCC--CeEEEeCCCCcEEEeecCCceeeec
Q 032092 81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIH--HTFATAGSDGAFNFWDKDSKQRLKV 146 (147)
Q Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg--~~latg~~Dg~i~iWd~~~~~~~~~ 146 (147)
++..+ .|-+-. +.|+|||=|+++++||++....+.+
T Consensus 115 pvkt~------------------------------~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t 152 (347)
T KOG0647|consen 115 PVKTC------------------------------HWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVAT 152 (347)
T ss_pred ceeEE------------------------------EEecCCCcceeEecccccceeecccCCCCeeee
Confidence 34444 555543 5899999999999999987766543
No 71
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.57 E-value=2.1e-14 Score=117.75 Aligned_cols=107 Identities=22% Similarity=0.334 Sum_probs=88.5
Q ss_pred eEeec-CCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092 2 VVGTA-DRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC 80 (147)
Q Consensus 2 ~~gs~-dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~ 80 (147)
|.|+. -|.+-||+.+...-.++ +.+|...+.++++||||+++|+|+.||.|+| ||..++-...+|..|+..
T Consensus 323 A~g~~klgQLlVweWqsEsYVlK--QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKv--Wn~~SgfC~vTFteHts~---- 394 (893)
T KOG0291|consen 323 AFGCSKLGQLLVWEWQSESYVLK--QQGHSDRITSLAYSPDGQLIATGAEDGKVKV--WNTQSGFCFVTFTEHTSG---- 394 (893)
T ss_pred EEcCCccceEEEEEeeccceeee--ccccccceeeEEECCCCcEEEeccCCCcEEE--EeccCceEEEEeccCCCc----
Confidence 44433 57999999998643222 1234457999999999999999999999999 888888888899999863
Q ss_pred eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092 81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF 147 (147)
Q Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~ 147 (147)
+..+ .|+..|+.+.+++-||+|+.||++..+..+||
T Consensus 395 -Vt~v------------------------------~f~~~g~~llssSLDGtVRAwDlkRYrNfRTf 430 (893)
T KOG0291|consen 395 -VTAV------------------------------QFTARGNVLLSSSLDGTVRAWDLKRYRNFRTF 430 (893)
T ss_pred -eEEE------------------------------EEEecCCEEEEeecCCeEEeeeecccceeeee
Confidence 5555 99999999999999999999999988888876
No 72
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.55 E-value=9.3e-15 Score=110.11 Aligned_cols=111 Identities=18% Similarity=0.340 Sum_probs=82.7
Q ss_pred CeEeecCCeEEEEECCCCc--cceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCce
Q 032092 1 MVVGTADRNLVVFNLQNPQ--TEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE 78 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~--~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~ 78 (147)
|++|+.|++|++||..... +.++.+. ...+|++|+|+|.|+++++|....++++ +|+.+.+-- ..+....++
T Consensus 187 LiS~srD~tvKlFDfsK~saKrA~K~~q--d~~~vrsiSfHPsGefllvgTdHp~~rl--Ydv~T~Qcf--vsanPd~qh 260 (430)
T KOG0640|consen 187 LISGSRDNTVKLFDFSKTSAKRAFKVFQ--DTEPVRSISFHPSGEFLLVGTDHPTLRL--YDVNTYQCF--VSANPDDQH 260 (430)
T ss_pred EEeccCCCeEEEEecccHHHHHHHHHhh--ccceeeeEeecCCCceEEEecCCCceeE--EeccceeEe--eecCccccc
Confidence 6899999999999998753 2333333 2358999999999999999999999999 665432110 111111122
Q ss_pred EEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092 79 TCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF 147 (147)
Q Consensus 79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~ 147 (147)
...++.+ -+++.|++.+||+.||.|+|||--+++|+.+|
T Consensus 261 t~ai~~V------------------------------~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~ 299 (430)
T KOG0640|consen 261 TGAITQV------------------------------RYSSTGSLYVTASKDGAIKLWDGVSNRCVRTI 299 (430)
T ss_pred ccceeEE------------------------------EecCCccEEEEeccCCcEEeeccccHHHHHHH
Confidence 2234444 99999999999999999999999999988775
No 73
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.55 E-value=3.3e-14 Score=108.56 Aligned_cols=98 Identities=17% Similarity=0.211 Sum_probs=82.6
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC 80 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~ 80 (147)
|.+|+.|++|++||+.++..++ ++. +|...|+.++|+|.|++|+++.+|+++++ ||.++++.+.++..|..
T Consensus 307 l~s~SrDktIk~wdv~tg~cL~-tL~-ghdnwVr~~af~p~Gkyi~ScaDDktlrv--wdl~~~~cmk~~~ah~h----- 377 (406)
T KOG0295|consen 307 LGSGSRDKTIKIWDVSTGMCLF-TLV-GHDNWVRGVAFSPGGKYILSCADDKTLRV--WDLKNLQCMKTLEAHEH----- 377 (406)
T ss_pred EEeecccceEEEEeccCCeEEE-EEe-cccceeeeeEEcCCCeEEEEEecCCcEEE--EEeccceeeeccCCCcc-----
Confidence 4688999999999999997654 343 46678999999999999999999999999 67776777777776664
Q ss_pred eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEee
Q 032092 81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWD 137 (147)
Q Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd 137 (147)
-++++ +|+.+-.++.||+-|.++++|.
T Consensus 378 fvt~l------------------------------Dfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 378 FVTSL------------------------------DFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred eeEEE------------------------------ecCCCCceEEeccccceeeeee
Confidence 25566 9998889999999999999995
No 74
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.55 E-value=6e-14 Score=108.55 Aligned_cols=108 Identities=16% Similarity=0.223 Sum_probs=83.5
Q ss_pred eEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEe
Q 032092 2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCS 81 (147)
Q Consensus 2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~ 81 (147)
++|-.|++||.||++.... .... +....|++|..+++|..+.+++-|.++.+ +|.++.....+|...... ....
T Consensus 316 ~SgH~DkkvRfwD~Rs~~~-~~sv--~~gg~vtSl~ls~~g~~lLsssRDdtl~v--iDlRt~eI~~~~sA~g~k-~asD 389 (459)
T KOG0288|consen 316 ISGHFDKKVRFWDIRSADK-TRSV--PLGGRVTSLDLSMDGLELLSSSRDDTLKV--IDLRTKEIRQTFSAEGFK-CASD 389 (459)
T ss_pred eecccccceEEEeccCCce-eeEe--ecCcceeeEeeccCCeEEeeecCCCceee--eecccccEEEEeeccccc-cccc
Confidence 5778899999999999864 2333 33346999999999999999999999999 898876666666432110 0111
Q ss_pred eccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeee
Q 032092 82 VISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLK 145 (147)
Q Consensus 82 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~ 145 (147)
.+. +.|||++.|+|+||+||.|+||++.++++.+
T Consensus 390 wtr------------------------------vvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~ 423 (459)
T KOG0288|consen 390 WTR------------------------------VVFSPDGSYVAAGSADGSVYIWSVFTGKLEK 423 (459)
T ss_pred cce------------------------------eEECCCCceeeeccCCCcEEEEEccCceEEE
Confidence 222 3999999999999999999999999998764
No 75
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.54 E-value=4e-14 Score=108.60 Aligned_cols=106 Identities=15% Similarity=0.251 Sum_probs=85.7
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCc---ceeEEEeccCCc
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQS---KNFTFKCHRDGS 77 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~---~~~~~~~h~~~~ 77 (147)
+.+++.|-+|+.||+.++.. ..++.. ..+++|++.+|..+.||+|+.|..|++ ||+|++. ..++|.+|++-
T Consensus 274 ~yS~SwDHTIk~WDletg~~-~~~~~~--~ksl~~i~~~~~~~Ll~~gssdr~irl--~DPR~~~gs~v~~s~~gH~nw- 347 (423)
T KOG0313|consen 274 IYSVSWDHTIKVWDLETGGL-KSTLTT--NKSLNCISYSPLSKLLASGSSDRHIRL--WDPRTGDGSVVSQSLIGHKNW- 347 (423)
T ss_pred eEeecccceEEEEEeecccc-eeeeec--CcceeEeecccccceeeecCCCCceee--cCCCCCCCceeEEeeecchhh-
Confidence 35789999999999999864 333332 247899999999999999999999999 9998753 24567788762
Q ss_pred eEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCC-CeEEEeCCCCcEEEeecCCce-eeec
Q 032092 78 ETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIH-HTFATAGSDGAFNFWDKDSKQ-RLKV 146 (147)
Q Consensus 78 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg-~~latg~~Dg~i~iWd~~~~~-~~~~ 146 (147)
|.++ .|+|.. .+|++|+.|+++++||.++-+ .|++
T Consensus 348 ----Vssv------------------------------kwsp~~~~~~~S~S~D~t~klWDvRS~k~plyd 384 (423)
T KOG0313|consen 348 ----VSSV------------------------------KWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYD 384 (423)
T ss_pred ----hhhe------------------------------ecCCCCceEEEEEecCCeEEEEEeccCCCccee
Confidence 5566 999976 789999999999999999865 6653
No 76
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.54 E-value=1.2e-13 Score=113.44 Aligned_cols=142 Identities=18% Similarity=0.269 Sum_probs=105.6
Q ss_pred EeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEee
Q 032092 3 VGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSV 82 (147)
Q Consensus 3 ~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v 82 (147)
+++..-.|.+||+|+++.....+....+.+++|+.-+||.-.||+|..||.|+| |+..+...+.+|.+|+........
T Consensus 38 a~~a~E~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqi--f~~~s~~~~~tfngHK~AVt~l~f 115 (888)
T KOG0306|consen 38 AVSALEQVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDILLLAVGYADGSVQI--FSLESEEILITFNGHKAAVTTLKF 115 (888)
T ss_pred EEeccccEeEEeeecchhhhhhhhhcccceEEEeeccCCcceEEEEecCceEEe--eccCCCceeeeecccccceEEEEE
Confidence 445667899999999953212122123357999999999999999999999999 787777888999999986543333
Q ss_pred ccc-eeeeecCCCcceeeeee--eeeeeeeeceE----EEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092 83 ISF-TSILAGDAPKYSSFYKV--KRLHLFVKSHV----IVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146 (147)
Q Consensus 83 ~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~----~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~ 146 (147)
... ..+++|+-|+..++|++ +.....+.||. ..-|..+.+++++.|-|+.|++||+++..|.+|
T Consensus 116 d~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~T 186 (888)
T KOG0306|consen 116 DKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFET 186 (888)
T ss_pred cccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeE
Confidence 333 34677888876555544 34466778885 355666668999999999999999999998875
No 77
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.53 E-value=3.5e-13 Score=110.14 Aligned_cols=142 Identities=15% Similarity=0.137 Sum_probs=106.2
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC 80 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~ 80 (147)
+++++.|++|++||..++... ..-..+|...|.++++..-++.+++|+.|.++++ ||..+|.-...+.+|.....+.
T Consensus 221 ~~~~s~~~tl~~~~~~~~~~i-~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rv--Wd~~sg~C~~~l~gh~stv~~~ 297 (537)
T KOG0274|consen 221 FKSGSDDSTLHLWDLNNGYLI-LTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERV--WDCSTGECTHSLQGHTSSVRCL 297 (537)
T ss_pred EEecCCCceeEEeecccceEE-EeeccCCCCCceeEEEecCCCEEEEEecCCcEEe--EecCCCcEEEEecCCCceEEEE
Confidence 468899999999999998643 3312356778999999776789999999999999 7788899999999998865555
Q ss_pred eeccceeeeecCCCcceeeeeeeee-eeeeeceEE----EEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092 81 SVISFTSILAGDAPKYSSFYKVKRL-HLFVKSHVI----VLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF 147 (147)
Q Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~ 147 (147)
.......+.++.|.++++|....+. ...+.||.. +..+ +.++.+|+.||+|++||..++++++++
T Consensus 298 ~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl 367 (537)
T KOG0274|consen 298 TIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSL 367 (537)
T ss_pred EccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeee
Confidence 4444433333455566666644333 334555753 3443 789999999999999999999999864
No 78
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.53 E-value=4.6e-14 Score=106.21 Aligned_cols=104 Identities=12% Similarity=0.216 Sum_probs=87.7
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCC--EEEEEeeCCeEEEEeecCCCCcceeEEEeccCCce
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQ--GFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE 78 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~--~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~ 78 (147)
+|+|+.|-+|+|||+++..+. ..+. .|...|+++.|.|+-. .|++|+.||.|.+ |+......+.++++|+.
T Consensus 56 ~aSGssDetI~IYDm~k~~ql-g~ll-~HagsitaL~F~~~~S~shLlS~sdDG~i~i--w~~~~W~~~~slK~H~~--- 128 (362)
T KOG0294|consen 56 VASGSSDETIHIYDMRKRKQL-GILL-SHAGSITALKFYPPLSKSHLLSGSDDGHIII--WRVGSWELLKSLKAHKG--- 128 (362)
T ss_pred EeccCCCCcEEEEeccchhhh-ccee-ccccceEEEEecCCcchhheeeecCCCcEEE--EEcCCeEEeeeeccccc---
Confidence 589999999999999987542 3333 3456799999999854 8999999999999 77766788889999986
Q ss_pred EEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCcee
Q 032092 79 TCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQR 143 (147)
Q Consensus 79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~ 143 (147)
.|+.+ +.||.|++-++-|.|+.++.||+-.|+.
T Consensus 129 --~Vt~l------------------------------siHPS~KLALsVg~D~~lr~WNLV~Gr~ 161 (362)
T KOG0294|consen 129 --QVTDL------------------------------SIHPSGKLALSVGGDQVLRTWNLVRGRV 161 (362)
T ss_pred --cccee------------------------------EecCCCceEEEEcCCceeeeehhhcCcc
Confidence 37887 9999999999999999999999987764
No 79
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.52 E-value=4.8e-13 Score=99.01 Aligned_cols=142 Identities=13% Similarity=0.109 Sum_probs=96.6
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeC-----CeEEEEeecCCC-------Cccee
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIE-----GRVGVHHLDDSQ-------QSKNF 68 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~d-----g~i~i~~~d~~~-------~~~~~ 68 (147)
|++|+.|.+++|||+.++++. .+... ..+|+.+.|+++|++++..+.+ +.|.+ +|++. ..+..
T Consensus 67 liTGSAD~t~kLWDv~tGk~l-a~~k~--~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~--fdi~~~~~~~~s~ep~~ 141 (327)
T KOG0643|consen 67 LITGSADQTAKLWDVETGKQL-ATWKT--NSPVKRVDFSFGGNLILASTDKQMGYTCFVSV--FDIRDDSSDIDSEEPYL 141 (327)
T ss_pred eeeccccceeEEEEcCCCcEE-EEeec--CCeeEEEeeccCCcEEEEEehhhcCcceEEEE--EEccCChhhhcccCceE
Confidence 689999999999999999764 34433 3579999999999988776543 55777 67662 33444
Q ss_pred EEEeccCCc--eEEeeccceeeeecCCCcceeeeee--eee----eeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCC
Q 032092 69 TFKCHRDGS--ETCSVISFTSILAGDAPKYSSFYKV--KRL----HLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDS 140 (147)
Q Consensus 69 ~~~~h~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~ 140 (147)
.+..+.... ..+..-...++++..+..+..+... +.. ..+-.+++.+.|+||..+|+||+-|.+.++||..+
T Consensus 142 kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~t 221 (327)
T KOG0643|consen 142 KIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRT 221 (327)
T ss_pred EecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccc
Confidence 555544321 2233333333444444444443311 111 22334567799999999999999999999999999
Q ss_pred ceeeecC
Q 032092 141 KQRLKVF 147 (147)
Q Consensus 141 ~~~~~~~ 147 (147)
.+++++|
T Consensus 222 l~v~Kty 228 (327)
T KOG0643|consen 222 LEVLKTY 228 (327)
T ss_pred eeeEEEe
Confidence 9999987
No 80
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.52 E-value=3.4e-13 Score=105.08 Aligned_cols=135 Identities=16% Similarity=0.216 Sum_probs=95.1
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccC-CCEEEEEeeCCeEEEEeecCCC---CcceeEEEeccCC
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPD-QQGFWVGSIEGRVGVHHLDDSQ---QSKNFTFKCHRDG 76 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spd-g~~l~~g~~dg~i~i~~~d~~~---~~~~~~~~~h~~~ 76 (147)
||+||.|.+|++||+.+++ +...+. .+..+|.+++|+|. +..|++|+.|+++.| .|.|. ......+.+.- +
T Consensus 259 LaSgsaD~TV~lWD~~~g~-p~~s~~-~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l--~D~R~~~~s~~~wk~~g~V-E 333 (463)
T KOG0270|consen 259 LASGSADKTVKLWDVDTGK-PKSSIT-HHGKKVQTLEWHPYEPSVLLSGSYDGTVAL--KDCRDPSNSGKEWKFDGEV-E 333 (463)
T ss_pred EEecCCCceEEEEEcCCCC-cceehh-hcCCceeEEEecCCCceEEEeccccceEEe--eeccCccccCceEEeccce-E
Confidence 6899999999999999996 444443 45568999999996 789999999999999 77763 11222232211 1
Q ss_pred ceEEeeccceeeeecCCCcceeee---eeeeeeeeeeceE----EEEEecCC-CeEEEeCCCCcEEEeecCC
Q 032092 77 SETCSVISFTSILAGDAPKYSSFY---KVKRLHLFVKSHV----IVLFVQIH-HTFATAGSDGAFNFWDKDS 140 (147)
Q Consensus 77 ~~~~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~----~~~fspdg-~~latg~~Dg~i~iWd~~~ 140 (147)
...+...+-..+..|.+++...+. +..+..+.+++|. .+++++.- .+++|++.|+.|++|++..
T Consensus 334 kv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~ 405 (463)
T KOG0270|consen 334 KVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDV 405 (463)
T ss_pred EEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecC
Confidence 122333333344556667544433 3345577788884 68999876 7899999999999999864
No 81
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.6e-13 Score=109.92 Aligned_cols=137 Identities=17% Similarity=0.174 Sum_probs=98.5
Q ss_pred ecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEe-ccCCceEEeec
Q 032092 5 TADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKC-HRDGSETCSVI 83 (147)
Q Consensus 5 s~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~-h~~~~~~~~v~ 83 (147)
+....|++|+..+++. ..+..-....|+++.|+|+|++||+|..+|.|.| ||..+.+...++.+ |.....+..-+
T Consensus 194 alg~~vylW~~~s~~v--~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~i--wD~~~~k~~~~~~~~h~~rvg~laW~ 269 (484)
T KOG0305|consen 194 ALGQSVYLWSASSGSV--TELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQI--WDVKEQKKTRTLRGSHASRVGSLAWN 269 (484)
T ss_pred EecceEEEEecCCCce--EEeEecCCCceEEEEECCCCCEEEEeecCCeEEE--EehhhccccccccCCcCceeEEEecc
Confidence 3446899999999863 2232222567999999999999999999999999 88777777777777 65543333333
Q ss_pred cceeeeecCCCcceeeeeee---eeeeeeeceE----EEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092 84 SFTSILAGDAPKYSSFYKVK---RLHLFVKSHV----IVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146 (147)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~----~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~ 146 (147)
. ..+++|+.+..+..+.+. +....+.+|- .++|+||+++||+||.|+.+.|||..+.+.+++
T Consensus 270 ~-~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~ 338 (484)
T KOG0305|consen 270 S-SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFT 338 (484)
T ss_pred C-ceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEE
Confidence 2 346667777554444332 2222466674 589999999999999999999999976655544
No 82
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.52 E-value=3.3e-13 Score=106.05 Aligned_cols=141 Identities=16% Similarity=0.182 Sum_probs=95.7
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccC-CCEEEEEeeCCeEEEEeecCCCC-cceeEEEe-ccCCc
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPD-QQGFWVGSIEGRVGVHHLDDSQQ-SKNFTFKC-HRDGS 77 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spd-g~~l~~g~~dg~i~i~~~d~~~~-~~~~~~~~-h~~~~ 77 (147)
|++|++|+.+++||+.+... ...+ ..|+.-|+|.+|+|. +..+++|+-||+|++ ||++.. ..+.++.+ |.-+.
T Consensus 126 l~s~sDd~v~k~~d~s~a~v-~~~l-~~htDYVR~g~~~~~~~hivvtGsYDg~vrl--~DtR~~~~~v~elnhg~pVe~ 201 (487)
T KOG0310|consen 126 LVSGSDDKVVKYWDLSTAYV-QAEL-SGHTDYVRCGDISPANDHIVVTGSYDGKVRL--WDTRSLTSRVVELNHGCPVES 201 (487)
T ss_pred EEecCCCceEEEEEcCCcEE-EEEe-cCCcceeEeeccccCCCeEEEecCCCceEEE--EEeccCCceeEEecCCCceee
Confidence 57899999999999999752 2233 356667999999996 458999999999999 777754 55566642 22222
Q ss_pred eEEeeccceee-eecCCCcceeeeee--eeeee----eeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092 78 ETCSVISFTSI-LAGDAPKYSSFYKV--KRLHL----FVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF 147 (147)
Q Consensus 78 ~~~~v~~~~~~-~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~ 147 (147)
..+ +.+-.+| ++|++. +++|.-. .+.+. |.+..+.+.+..+++.|+|||-|+.|+++|+.+-+.++.+
T Consensus 202 vl~-lpsgs~iasAgGn~-vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~ 276 (487)
T KOG0310|consen 202 VLA-LPSGSLIASAGGNS-VKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSW 276 (487)
T ss_pred EEE-cCCCCEEEEcCCCe-EEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEee
Confidence 222 2222233 444443 3333322 22222 3333467899999999999999999999998888888754
No 83
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=8.2e-14 Score=108.97 Aligned_cols=108 Identities=18% Similarity=0.269 Sum_probs=81.7
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCC--C--------------
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQ--Q-------------- 64 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~--~-------------- 64 (147)
|+|+|.|.++++||+..+.. ..++..+ .++.++++.|-++.+.+|+.+|.|.+ .+..+ +
T Consensus 191 l~TaS~D~t~k~wdlS~g~L-Llti~fp--~si~av~lDpae~~~yiGt~~G~I~~--~~~~~~~~~~~~v~~k~~~~~~ 265 (476)
T KOG0646|consen 191 LYTASEDRTIKLWDLSLGVL-LLTITFP--SSIKAVALDPAERVVYIGTEEGKIFQ--NLLFKLSGQSAGVNQKGRHEEN 265 (476)
T ss_pred EEEecCCceEEEEEecccee-eEEEecC--CcceeEEEcccccEEEecCCcceEEe--eehhcCCccccccccccccccc
Confidence 57899999999999999964 4455443 46999999999999999999999988 44432 1
Q ss_pred cceeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceee
Q 032092 65 SKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRL 144 (147)
Q Consensus 65 ~~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~ 144 (147)
.....+.||.++ .+++. ++.+-||.+|++|+.||+|+|||..+++++
T Consensus 266 t~~~~~~Gh~~~---~~ITc------------------------------Lais~DgtlLlSGd~dg~VcvWdi~S~Q~i 312 (476)
T KOG0646|consen 266 TQINVLVGHENE---SAITC------------------------------LAISTDGTLLLSGDEDGKVCVWDIYSKQCI 312 (476)
T ss_pred ceeeeeccccCC---cceeE------------------------------EEEecCccEEEeeCCCCCEEEEecchHHHH
Confidence 111122333321 02233 499999999999999999999999999998
Q ss_pred ec
Q 032092 145 KV 146 (147)
Q Consensus 145 ~~ 146 (147)
++
T Consensus 313 Rt 314 (476)
T KOG0646|consen 313 RT 314 (476)
T ss_pred HH
Confidence 75
No 84
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.52 E-value=4.6e-14 Score=106.37 Aligned_cols=111 Identities=17% Similarity=0.251 Sum_probs=90.1
Q ss_pred CeEeecCCeEEEEECCCCccceeE-ecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEE-eccCCce
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKR-INSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFK-CHRDGSE 78 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~-~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~-~h~~~~~ 78 (147)
|++|.+..++++||+.+.+.-+.. ...+|...|+++.+|+.|+.+++|+.||.|+| ||--+++-+.++. .|...
T Consensus 231 llvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~Ikl--wDGVS~rCv~t~~~AH~gs-- 306 (430)
T KOG0640|consen 231 LLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKL--WDGVSNRCVRTIGNAHGGS-- 306 (430)
T ss_pred EEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEe--eccccHHHHHHHHhhcCCc--
Confidence 578888999999999998642111 12245567999999999999999999999999 8877777776664 45442
Q ss_pred EEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092 79 TCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF 147 (147)
Q Consensus 79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~ 147 (147)
.+.+. .|+.+|+++++.|.|..+++|.+.+++++.+|
T Consensus 307 --evcSa------------------------------~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Y 343 (430)
T KOG0640|consen 307 --EVCSA------------------------------VFTKNGKYILSSGKDSTVKLWEISTGRMLKEY 343 (430)
T ss_pred --eeeeE------------------------------EEccCCeEEeecCCcceeeeeeecCCceEEEE
Confidence 35555 99999999999999999999999999999875
No 85
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.49 E-value=4.1e-13 Score=100.70 Aligned_cols=139 Identities=25% Similarity=0.343 Sum_probs=91.4
Q ss_pred CeEeecCCeEEEEECCCCcc---------ce----eEecCCCCcceEEEEEcc-CCCEEEEEeeCCeEEEEeecCCCCcc
Q 032092 1 MVVGTADRNLVVFNLQNPQT---------EF----KRINSPLKYQMRCVAAFP-DQQGFWVGSIEGRVGVHHLDDSQQSK 66 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~---------~~----~~~~~~~~~~i~~la~sp-dg~~l~~g~~dg~i~i~~~d~~~~~~ 66 (147)
|++|+.||.|.+||+++-.. .+ +..+..|++.|.++.|-| |-..|.+++-|.++++ ||+.+-+.
T Consensus 59 mlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKV--WDtnTlQ~ 136 (397)
T KOG4283|consen 59 MLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKV--WDTNTLQE 136 (397)
T ss_pred EeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEE--eeccccee
Confidence 57899999999999987541 00 111224677899999999 5668999999999999 77766555
Q ss_pred eeEEEeccC-CceEEeec--cceeeeecCCCcceeeeeeeee--eeeeece----EEEEEecCC-CeEEEeCCCCcEEEe
Q 032092 67 NFTFKCHRD-GSETCSVI--SFTSILAGDAPKYSSFYKVKRL--HLFVKSH----VIVLFVQIH-HTFATAGSDGAFNFW 136 (147)
Q Consensus 67 ~~~~~~h~~-~~~~~~v~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~fspdg-~~latg~~Dg~i~iW 136 (147)
...|+-... ..++.++- +-++|++|-++.-.-+=+++.. .-.+.|| .++.|+|.. -.||||+.||.|++|
T Consensus 137 a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlW 216 (397)
T KOG4283|consen 137 AVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLW 216 (397)
T ss_pred eEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEE
Confidence 555542110 01111111 2245666766632222233322 2245666 579999987 569999999999999
Q ss_pred ecCCc
Q 032092 137 DKDSK 141 (147)
Q Consensus 137 d~~~~ 141 (147)
|++.-
T Consensus 217 DiRra 221 (397)
T KOG4283|consen 217 DIRRA 221 (397)
T ss_pred Eeecc
Confidence 98753
No 86
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.49 E-value=5.6e-13 Score=112.46 Aligned_cols=142 Identities=15% Similarity=0.150 Sum_probs=100.2
Q ss_pred CeEee--cCCeEEEEECCCCcc-----------ceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecC------
Q 032092 1 MVVGT--ADRNLVVFNLQNPQT-----------EFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDD------ 61 (147)
Q Consensus 1 l~~gs--~dg~v~iwdi~~~~~-----------~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~------ 61 (147)
+|||+ .||.++||+...--. .+-+. ..|...|+|+-|+|||++||+|++|.-|.||..+.
T Consensus 28 ~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m-~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~ 106 (942)
T KOG0973|consen 28 FATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTM-DDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTV 106 (942)
T ss_pred EecCCccccccceeeccccccchhhhhhcccchhheee-ccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCccc
Confidence 46788 899999998654210 11112 13456799999999999999999999999976662
Q ss_pred C----------CCcceeEEEeccCCc--eEEeeccceeeeecCCCcceeeeeee--eeeeeeeceE----EEEEecCCCe
Q 032092 62 S----------QQSKNFTFKCHRDGS--ETCSVISFTSILAGDAPKYSSFYKVK--RLHLFVKSHV----IVLFVQIHHT 123 (147)
Q Consensus 62 ~----------~~~~~~~~~~h~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~----~~~fspdg~~ 123 (147)
. +.+....+.+|.... .++++++. ++++++.|+..+.|+.. .....+.+|. .++|-|-|++
T Consensus 107 fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~-~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky 185 (942)
T KOG0973|consen 107 FGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS-LLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKY 185 (942)
T ss_pred ccccccccccceeeEEEEEecCCCccceeccCCCcc-EEEEecccceEEEEccccceeeeeeecccccccceEECCccCe
Confidence 0 112455778888764 46666554 45556666555544443 3355788885 4899999999
Q ss_pred EEEeCCCCcEEEeecCCceee
Q 032092 124 FATAGSDGAFNFWDKDSKQRL 144 (147)
Q Consensus 124 latg~~Dg~i~iWd~~~~~~~ 144 (147)
|||=+.|++|+||++.+-.+.
T Consensus 186 ~ASqsdDrtikvwrt~dw~i~ 206 (942)
T KOG0973|consen 186 FASQSDDRTLKVWRTSDWGIE 206 (942)
T ss_pred eeeecCCceEEEEEcccceee
Confidence 999999999999997764443
No 87
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.48 E-value=9.2e-14 Score=109.14 Aligned_cols=107 Identities=19% Similarity=0.235 Sum_probs=81.5
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCC-CEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQ-QGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSET 79 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg-~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~ 79 (147)
||+|.+.|.|+|||.++... ...+. .|+.|+..+.|+|++ +.|++|++|+.+++ ||+.+.....++.+|+..
T Consensus 83 laaGD~sG~V~vfD~k~r~i-LR~~~-ah~apv~~~~f~~~d~t~l~s~sDd~v~k~--~d~s~a~v~~~l~~htDY--- 155 (487)
T KOG0310|consen 83 LAAGDESGHVKVFDMKSRVI-LRQLY-AHQAPVHVTKFSPQDNTMLVSGSDDKVVKY--WDLSTAYVQAELSGHTDY--- 155 (487)
T ss_pred EEccCCcCcEEEeccccHHH-HHHHh-hccCceeEEEecccCCeEEEecCCCceEEE--EEcCCcEEEEEecCCcce---
Confidence 57788899999999666322 22232 467899999999975 56778888888888 676666666688899874
Q ss_pred EeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCC-CeEEEeCCCCcEEEeecCCc-eeeec
Q 032092 80 CSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIH-HTFATAGSDGAFNFWDKDSK-QRLKV 146 (147)
Q Consensus 80 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg-~~latg~~Dg~i~iWd~~~~-~~~~~ 146 (147)
|.+. +|+|-. .+++|||+||+|++||++.. ..+.+
T Consensus 156 --VR~g------------------------------~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~e 192 (487)
T KOG0310|consen 156 --VRCG------------------------------DISPANDHIVVTGSYDGKVRLWDTRSLTSRVVE 192 (487)
T ss_pred --eEee------------------------------ccccCCCeEEEecCCCceEEEEEeccCCceeEE
Confidence 5555 899965 68999999999999999876 44443
No 88
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=7.6e-13 Score=99.94 Aligned_cols=141 Identities=13% Similarity=0.163 Sum_probs=91.4
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCC-ceE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDG-SET 79 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~-~~~ 79 (147)
||+|+.||.|.|||+-+... .++.++|-.||.|++|||||+.|+++|.|..|.+ ||+..|..++.++-...- ...
T Consensus 38 lAvGc~nG~vvI~D~~T~~i--ar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~l--wDl~~gs~l~rirf~spv~~~q 113 (405)
T KOG1273|consen 38 LAVGCANGRVVIYDFDTFRI--ARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKL--WDLLKGSPLKRIRFDSPVWGAQ 113 (405)
T ss_pred eeeeccCCcEEEEEccccch--hhhhhccccceeEEEecCCCCEeeeecCCceeEE--EeccCCCceeEEEccCccceee
Confidence 68999999999999999752 2344567779999999999999999999999999 888888777665421100 000
Q ss_pred Eeeccc-eeeee--cCCCcceeeeeeeeeeeee----eceE--E---EEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092 80 CSVISF-TSILA--GDAPKYSSFYKVKRLHLFV----KSHV--I---VLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF 147 (147)
Q Consensus 80 ~~v~~~-~~~~~--~~~~~~~~~~~~~~~~~~~----~~~~--~---~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~ 147 (147)
+-+... ..++. -..+.+..+.+ +.+..+ .+.. + ..|.+.|+++++|.+.|.+.++|+++.+++..|
T Consensus 114 ~hp~k~n~~va~~~~~sp~vi~~s~--~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~ 191 (405)
T KOG1273|consen 114 WHPRKRNKCVATIMEESPVVIDFSD--PKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASF 191 (405)
T ss_pred eccccCCeEEEEEecCCcEEEEecC--CceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeee
Confidence 000000 00110 00011111111 111111 1111 1 258999999999999999999999999888754
No 89
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.48 E-value=1.2e-13 Score=107.20 Aligned_cols=134 Identities=16% Similarity=0.193 Sum_probs=99.9
Q ss_pred eEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCc----
Q 032092 2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGS---- 77 (147)
Q Consensus 2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~---- 77 (147)
++.+.|..|++|+..+.. ....++ ...+|++.++|.|++++++.-.+..+++ ||..+.+.+..+.||+...
T Consensus 370 l~v~~d~~i~l~~~e~~~-dr~lis--e~~~its~~iS~d~k~~LvnL~~qei~L--WDl~e~~lv~kY~Ghkq~~fiIr 444 (519)
T KOG0293|consen 370 LLVTVDKKIRLYNREARV-DRGLIS--EEQPITSFSISKDGKLALVNLQDQEIHL--WDLEENKLVRKYFGHKQGHFIIR 444 (519)
T ss_pred EEEecccceeeechhhhh-hhcccc--ccCceeEEEEcCCCcEEEEEcccCeeEE--eecchhhHHHHhhcccccceEEE
Confidence 344678889999987753 222232 2357999999999999999999999999 6666778888899998752
Q ss_pred eEEeeccceeeeecCCC-cceeee-eeeeeeeeeeceE----EEEEecCC-CeEEEeCCCCcEEEeecCC
Q 032092 78 ETCSVISFTSILAGDAP-KYSSFY-KVKRLHLFVKSHV----IVLFVQIH-HTFATAGSDGAFNFWDKDS 140 (147)
Q Consensus 78 ~~~~v~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~----~~~fspdg-~~latg~~Dg~i~iWd~~~ 140 (147)
.|+.-....+|++|++| .+..|. .-......++||. -++|+|.. .+||+||.||+||||-...
T Consensus 445 SCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 445 SCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred eccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 24444444678888888 444444 2335566889984 48999976 7899999999999998654
No 90
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=4.3e-14 Score=115.47 Aligned_cols=105 Identities=20% Similarity=0.315 Sum_probs=89.8
Q ss_pred eEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEe
Q 032092 2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCS 81 (147)
Q Consensus 2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~ 81 (147)
|.|+.|+.+++||++.... .+.+.+ +..-+++++|+|+|++++.|+.|.+++| ||...|+.+.+|++|.. .
T Consensus 128 a~gStdtd~~iwD~Rk~Gc-~~~~~s-~~~vv~~l~lsP~Gr~v~~g~ed~tvki--~d~~agk~~~ef~~~e~-----~ 198 (825)
T KOG0267|consen 128 ASGSTDTDLKIWDIRKKGC-SHTYKS-HTRVVDVLRLSPDGRWVASGGEDNTVKI--WDLTAGKLSKEFKSHEG-----K 198 (825)
T ss_pred ccccccccceehhhhccCc-eeeecC-CcceeEEEeecCCCceeeccCCcceeee--ecccccccccccccccc-----c
Confidence 5789999999999996543 455544 5556999999999999999999999999 89988999999998875 3
Q ss_pred eccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeee
Q 032092 82 VISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLK 145 (147)
Q Consensus 82 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~ 145 (147)
+.++ .|||..-++++||.|+++++||+++...+-
T Consensus 199 v~sl------------------------------e~hp~e~Lla~Gs~d~tv~f~dletfe~I~ 232 (825)
T KOG0267|consen 199 VQSL------------------------------EFHPLEVLLAPGSSDRTVRFWDLETFEVIS 232 (825)
T ss_pred cccc------------------------------ccCchhhhhccCCCCceeeeeccceeEEee
Confidence 5666 899998999999999999999999877653
No 91
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.47 E-value=4e-13 Score=103.81 Aligned_cols=109 Identities=15% Similarity=0.272 Sum_probs=78.8
Q ss_pred CeEeecCCeEEEEECCCCcc-----cee--EecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCC---------
Q 032092 1 MVVGTADRNLVVFNLQNPQT-----EFK--RINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQ--------- 64 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~-----~~~--~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~--------- 64 (147)
||||+.|..|+||-+.+.+. .+. ...+.|...|+++-|+|+|+.||+|+.+|.|.|| -...-
T Consensus 29 laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW--k~~~~~~~~~d~e~ 106 (434)
T KOG1009|consen 29 LATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW--KQGDVRIFDADTEA 106 (434)
T ss_pred eecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE--EecCcCCccccchh
Confidence 68999999999999876532 111 1123455679999999999999999999999994 32210
Q ss_pred ---c----ceeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEee
Q 032092 65 ---S----KNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWD 137 (147)
Q Consensus 65 ---~----~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd 137 (147)
+ ....+.+|+. .+.. ++|+||++.+++|+.|..+++||
T Consensus 107 ~~~ke~w~v~k~lr~h~~-----diyd------------------------------L~Ws~d~~~l~s~s~dns~~l~D 151 (434)
T KOG1009|consen 107 DLNKEKWVVKKVLRGHRD-----DIYD------------------------------LAWSPDSNFLVSGSVDNSVRLWD 151 (434)
T ss_pred hhCccceEEEEEeccccc-----chhh------------------------------hhccCCCceeeeeeccceEEEEE
Confidence 0 0011122222 1222 49999999999999999999999
Q ss_pred cCCceeeec
Q 032092 138 KDSKQRLKV 146 (147)
Q Consensus 138 ~~~~~~~~~ 146 (147)
+..++++..
T Consensus 152 v~~G~l~~~ 160 (434)
T KOG1009|consen 152 VHAGQLLAI 160 (434)
T ss_pred eccceeEee
Confidence 999988764
No 92
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=1.1e-12 Score=96.10 Aligned_cols=138 Identities=14% Similarity=0.172 Sum_probs=95.5
Q ss_pred CeEeecCCeEEEEECCCCcc--ceeEecCCCCcceEEEEE-cc-CCCEEEEEeeCCeEEEEeecCCCC--cceeEEEecc
Q 032092 1 MVVGTADRNLVVFNLQNPQT--EFKRINSPLKYQMRCVAA-FP-DQQGFWVGSIEGRVGVHHLDDSQQ--SKNFTFKCHR 74 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~--~~~~~~~~~~~~i~~la~-sp-dg~~l~~g~~dg~i~i~~~d~~~~--~~~~~~~~h~ 74 (147)
||||+.|++|+|+.++...+ +...+. +|..||..++| +| -|..||+++-||.|.| |.-.++ ...+.+..|.
T Consensus 26 lATcsSD~tVkIf~v~~n~~s~ll~~L~-Gh~GPVwqv~wahPk~G~iLAScsYDgkVIi--Wke~~g~w~k~~e~~~h~ 102 (299)
T KOG1332|consen 26 LATCSSDGTVKIFEVRNNGQSKLLAELT-GHSGPVWKVAWAHPKFGTILASCSYDGKVII--WKEENGRWTKAYEHAAHS 102 (299)
T ss_pred eeeecCCccEEEEEEcCCCCceeeeEec-CCCCCeeEEeecccccCcEeeEeecCceEEE--EecCCCchhhhhhhhhhc
Confidence 69999999999999998643 333343 57789999999 45 4999999999999999 655444 3445556665
Q ss_pred CCc--eEEeeccc--eeeeecCCCcceeeeee-------eee-eeeeeceEEEEEecC---C-----------CeEEEeC
Q 032092 75 DGS--ETCSVISF--TSILAGDAPKYSSFYKV-------KRL-HLFVKSHVIVLFVQI---H-----------HTFATAG 128 (147)
Q Consensus 75 ~~~--~~~~v~~~--~~~~~~~~~~~~~~~~~-------~~~-~~~~~~~~~~~fspd---g-----------~~latg~ 128 (147)
... .++.+... .+..+++|..+.++.-- ++. ..+-.|.++++|.|- | +.|+|||
T Consensus 103 ~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgG 182 (299)
T KOG1332|consen 103 ASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGG 182 (299)
T ss_pred ccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccC
Confidence 431 23333333 33345777766654421 111 223345578999996 5 5699999
Q ss_pred CCCcEEEeecCCc
Q 032092 129 SDGAFNFWDKDSK 141 (147)
Q Consensus 129 ~Dg~i~iWd~~~~ 141 (147)
.|..|+||+..++
T Consensus 183 cDn~VkiW~~~~~ 195 (299)
T KOG1332|consen 183 CDNLVKIWKFDSD 195 (299)
T ss_pred CccceeeeecCCc
Confidence 9999999998775
No 93
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=9.3e-14 Score=117.73 Aligned_cols=145 Identities=12% Similarity=0.215 Sum_probs=102.4
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccC-CCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCc--
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPD-QQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGS-- 77 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spd-g~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~-- 77 (147)
||+|+.||.|.|||+.+.+.++..-.......|.+|+|+.. ...||+++.+|++.| ||+|..+.+..+..|....
T Consensus 132 LASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~i--WDlr~~~pii~ls~~~~~~~~ 209 (1049)
T KOG0307|consen 132 LASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVI--WDLRKKKPIIKLSDTPGRMHC 209 (1049)
T ss_pred eeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCcee--ccccCCCcccccccCCCccce
Confidence 68999999999999999887754321112346999999886 567899999999999 7888767776666554422
Q ss_pred --eEEeeccceee-eecCCCc--ceeeee---eeeeee----eeeceEEEEEecCC-CeEEEeCCCCcEEEeecCCceee
Q 032092 78 --ETCSVISFTSI-LAGDAPK--YSSFYK---VKRLHL----FVKSHVIVLFVQIH-HTFATAGSDGAFNFWDKDSKQRL 144 (147)
Q Consensus 78 --~~~~v~~~~~~-~~~~~~~--~~~~~~---~~~~~~----~~~~~~~~~fspdg-~~latg~~Dg~i~iWd~~~~~~~ 144 (147)
..|..+..+.+ +++.|+. +...|+ ...... |-+|.++++|+|.. .+|+|++-|+.|.+||.++++.+
T Consensus 210 S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl 289 (1049)
T KOG0307|consen 210 SVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVL 289 (1049)
T ss_pred eeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEe
Confidence 23444433333 4444442 222233 222323 44566789999966 99999999999999999999998
Q ss_pred ecC
Q 032092 145 KVF 147 (147)
Q Consensus 145 ~~~ 147 (147)
.+|
T Consensus 290 ~~~ 292 (1049)
T KOG0307|consen 290 GEL 292 (1049)
T ss_pred eec
Confidence 765
No 94
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.45 E-value=6.9e-14 Score=110.83 Aligned_cols=108 Identities=22% Similarity=0.355 Sum_probs=86.1
Q ss_pred CeEeecCCeEEEEECCCCcccee-EecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFK-RINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSET 79 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~-~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~ 79 (147)
|++|++-.++.|||+..+...++ .+.+. .-.-.+|++|||.+..-++..||.|.| ||+.+...+..|+||...
T Consensus 480 LivGGeastlsiWDLAapTprikaeltss-apaCyALa~spDakvcFsccsdGnI~v--wDLhnq~~VrqfqGhtDG--- 553 (705)
T KOG0639|consen 480 LIVGGEASTLSIWDLAAPTPRIKAELTSS-APACYALAISPDAKVCFSCCSDGNIAV--WDLHNQTLVRQFQGHTDG--- 553 (705)
T ss_pred EEeccccceeeeeeccCCCcchhhhcCCc-chhhhhhhcCCccceeeeeccCCcEEE--EEcccceeeecccCCCCC---
Confidence 68899999999999998753211 11110 012456899999999889999999999 888888889999999874
Q ss_pred EeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092 80 CSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146 (147)
Q Consensus 80 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~ 146 (147)
+.++ ..++||..|-|||-|.+||.||+++++.+.+
T Consensus 554 --ascI------------------------------dis~dGtklWTGGlDntvRcWDlregrqlqq 588 (705)
T KOG0639|consen 554 --ASCI------------------------------DISKDGTKLWTGGLDNTVRCWDLREGRQLQQ 588 (705)
T ss_pred --ceeE------------------------------EecCCCceeecCCCccceeehhhhhhhhhhh
Confidence 3444 8899999999999999999999999877643
No 95
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.45 E-value=3.4e-13 Score=110.71 Aligned_cols=110 Identities=21% Similarity=0.303 Sum_probs=83.8
Q ss_pred CeEeecCCeEEEEECCCC-----cc-ceeEec----CCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEE
Q 032092 1 MVVGTADRNLVVFNLQNP-----QT-EFKRIN----SPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTF 70 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~-----~~-~~~~~~----~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~ 70 (147)
.++|+.|.+|++||..-. .+ .+-.+. -.....|.|+++||||++||+|-.|++++++++|.- +.-.++
T Consensus 469 ~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtl--KFflsL 546 (888)
T KOG0306|consen 469 FVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL--KFFLSL 546 (888)
T ss_pred eEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecce--eeeeee
Confidence 479999999999996421 11 000000 012346999999999999999999999999888763 444455
Q ss_pred EeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092 71 KCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF 147 (147)
Q Consensus 71 ~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~ 147 (147)
-||+. ||.++ ..|||+++++|||.|++|+||-++=|.|-+.|
T Consensus 547 YGHkL-----PV~sm------------------------------DIS~DSklivTgSADKnVKiWGLdFGDCHKS~ 588 (888)
T KOG0306|consen 547 YGHKL-----PVLSM------------------------------DISPDSKLIVTGSADKNVKIWGLDFGDCHKSF 588 (888)
T ss_pred ccccc-----ceeEE------------------------------eccCCcCeEEeccCCCceEEeccccchhhhhh
Confidence 67775 78887 99999999999999999999999877776543
No 96
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.45 E-value=8e-13 Score=103.03 Aligned_cols=110 Identities=18% Similarity=0.247 Sum_probs=85.1
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC 80 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~ 80 (147)
+++++.|-.|+||.+.....+ ....+|+.+|+.+..+|.|+||++++.||+... -|.+++..+.... |. ....
T Consensus 276 v~~aSad~~i~vws~~~~s~~--~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~F--sd~~~g~~lt~vs-~~--~s~v 348 (506)
T KOG0289|consen 276 VITASADEIIRVWSVPLSSEP--TSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAF--SDISSGSQLTVVS-DE--TSDV 348 (506)
T ss_pred eeecCCcceEEeeccccccCc--cccccccccceeeeeccCCcEEEEecCCceEEE--EEccCCcEEEEEe-ec--cccc
Confidence 367899999999999887543 344577889999999999999999999999987 6777776644332 21 1111
Q ss_pred eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092 81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF 147 (147)
Q Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~ 147 (147)
.+.+. +|||||..|.+|..||.++|||++++.-+..|
T Consensus 349 ~~ts~------------------------------~fHpDgLifgtgt~d~~vkiwdlks~~~~a~F 385 (506)
T KOG0289|consen 349 EYTSA------------------------------AFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKF 385 (506)
T ss_pred eeEEe------------------------------eEcCCceEEeccCCCceEEEEEcCCccccccC
Confidence 24444 99999999999999999999999887654433
No 97
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.45 E-value=4.4e-13 Score=103.52 Aligned_cols=107 Identities=14% Similarity=0.176 Sum_probs=87.0
Q ss_pred CeEeecCCeEEEEECCCCcc------ceeEecCCCCcceEEEEEccC-CCEEEEEeeCCeEEEEeecCCCCcceeEEEec
Q 032092 1 MVVGTADRNLVVFNLQNPQT------EFKRINSPLKYQMRCVAAFPD-QQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCH 73 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~------~~~~~~~~~~~~i~~la~spd-g~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h 73 (147)
||+||+|.+|.||++..+.. |+..+. .|...|.-|+|+|. .+.|++++.|.+|.| ||..++..+.++. |
T Consensus 97 IASgSeD~~v~vW~IPe~~l~~~ltepvv~L~-gH~rrVg~V~wHPtA~NVLlsag~Dn~v~i--Wnv~tgeali~l~-h 172 (472)
T KOG0303|consen 97 IASGSEDTKVMVWQIPENGLTRDLTEPVVELY-GHQRRVGLVQWHPTAPNVLLSAGSDNTVSI--WNVGTGEALITLD-H 172 (472)
T ss_pred eecCCCCceEEEEECCCcccccCcccceEEEe-ecceeEEEEeecccchhhHhhccCCceEEE--EeccCCceeeecC-C
Confidence 68999999999999977532 222332 34456888999997 567899999999999 7777788888877 7
Q ss_pred cCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092 74 RDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146 (147)
Q Consensus 74 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~ 146 (147)
.. .+.++ +|+-||.+|+|.+-|++|||||-++++.+.+
T Consensus 173 pd-----~i~S~------------------------------sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e 210 (472)
T KOG0303|consen 173 PD-----MVYSM------------------------------SFNRDGSLLCTTCKDKKVRVIDPRRGTVVSE 210 (472)
T ss_pred CC-----eEEEE------------------------------EeccCCceeeeecccceeEEEcCCCCcEeee
Confidence 65 35666 9999999999999999999999999887753
No 98
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.44 E-value=2.6e-13 Score=111.58 Aligned_cols=103 Identities=17% Similarity=0.259 Sum_probs=79.3
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC 80 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~ 80 (147)
++++.+.|.+++||+|.+.+.+.++ .+|.++|.|+.|+|++.+||+|+-|++|+||+|+....+++.+. ++. .
T Consensus 192 F~s~~dsG~lqlWDlRqp~r~~~k~-~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tI--nTi----a 264 (839)
T KOG0269|consen 192 FASIHDSGYLQLWDLRQPDRCEKKL-TAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTI--NTI----A 264 (839)
T ss_pred EEEecCCceEEEeeccCchhHHHHh-hcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEE--eec----c
Confidence 3678899999999999987655444 36788999999999999999999999999977764333333332 222 2
Q ss_pred eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCC-CeEEEeCC--CCcEEEeecCC
Q 032092 81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIH-HTFATAGS--DGAFNFWDKDS 140 (147)
Q Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg-~~latg~~--Dg~i~iWd~~~ 140 (147)
+++.+ .|-|+. ..|||+++ |-.|+|||++-
T Consensus 265 pv~rV------------------------------kWRP~~~~hLAtcsmv~dtsV~VWDvrR 297 (839)
T KOG0269|consen 265 PVGRV------------------------------KWRPARSYHLATCSMVVDTSVHVWDVRR 297 (839)
T ss_pred eeeee------------------------------eeccCccchhhhhhccccceEEEEeecc
Confidence 45554 999987 67899887 77999999853
No 99
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.44 E-value=1.5e-12 Score=107.43 Aligned_cols=135 Identities=16% Similarity=0.243 Sum_probs=92.2
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEe--ccC---
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKC--HRD--- 75 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~--h~~--- 75 (147)
+++||-||+||||+|...+. +. ... .+.-|++++|+|||++.++|+.+|.+++ +++...+....+.- |+.
T Consensus 425 FiSGSLD~KvRiWsI~d~~V-v~-W~D-l~~lITAvcy~PdGk~avIGt~~G~C~f--Y~t~~lk~~~~~~I~~~~~Kk~ 499 (712)
T KOG0283|consen 425 FISGSLDGKVRLWSISDKKV-VD-WND-LRDLITAVCYSPDGKGAVIGTFNGYCRF--YDTEGLKLVSDFHIRLHNKKKK 499 (712)
T ss_pred EeecccccceEEeecCcCee-Ee-ehh-hhhhheeEEeccCCceEEEEEeccEEEE--EEccCCeEEEeeeEeeccCccc
Confidence 47999999999999998753 22 221 2346999999999999999999999999 77765444443322 111
Q ss_pred -----Cce-EEeeccceeeeecCCCcceeeeee-eeeeeeeec------eEEEEEecCCCeEEEeCCCCcEEEeecCC
Q 032092 76 -----GSE-TCSVISFTSILAGDAPKYSSFYKV-KRLHLFVKS------HVIVLFVQIHHTFATAGSDGAFNFWDKDS 140 (147)
Q Consensus 76 -----~~~-~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------~~~~~fspdg~~latg~~Dg~i~iWd~~~ 140 (147)
.+. .++....-++.++-|..++++.-- ..+...++| ..+.+|++||++|++|+.|..|+||+.+.
T Consensus 500 ~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 500 QGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred cCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 111 122222223445666678877642 222333433 35689999999999999999999999754
No 100
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.44 E-value=1.2e-12 Score=104.05 Aligned_cols=137 Identities=16% Similarity=0.167 Sum_probs=90.4
Q ss_pred CeEeecCCeEEEEECCCCccc---eeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEE-------
Q 032092 1 MVVGTADRNLVVFNLQNPQTE---FKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTF------- 70 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~---~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~------- 70 (147)
+++|+.|..|+.||++..... ++.+......+|++++|||.|++|++.+..-+++| +|.. |..+..+
T Consensus 182 ~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl--~DRd-G~~~~e~~KGDQYI 258 (641)
T KOG0772|consen 182 FVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKL--LDRD-GFEIVEFSKGDQYI 258 (641)
T ss_pred eeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeE--EccC-Cceeeeeeccchhh
Confidence 589999999999999876532 33333333457999999999999999898899999 5543 3322222
Q ss_pred ------EeccCCce--EEe-eccceeeeecCCCcceeee--eeeeeeeeeece---------EEEEEecCCCeEEEeCCC
Q 032092 71 ------KCHRDGSE--TCS-VISFTSILAGDAPKYSSFY--KVKRLHLFVKSH---------VIVLFVQIHHTFATAGSD 130 (147)
Q Consensus 71 ------~~h~~~~~--~~~-v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---------~~~~fspdg~~latg~~D 130 (147)
+||...-. +|. -+.-..++.|-|...+.|. +.++...++... .+|+|+|||++||+|..|
T Consensus 259 ~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~D 338 (641)
T KOG0772|consen 259 RDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLD 338 (641)
T ss_pred hhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccC
Confidence 34443211 122 2222334556555555544 333333343221 479999999999999999
Q ss_pred CcEEEeecCC
Q 032092 131 GAFNFWDKDS 140 (147)
Q Consensus 131 g~i~iWd~~~ 140 (147)
|.|.+|+..+
T Consensus 339 GSIQ~W~~~~ 348 (641)
T KOG0772|consen 339 GSIQIWDKGS 348 (641)
T ss_pred CceeeeecCC
Confidence 9999999743
No 101
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.43 E-value=2.7e-12 Score=98.27 Aligned_cols=99 Identities=20% Similarity=0.265 Sum_probs=81.8
Q ss_pred cCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeE-EEEeecCCCCcceeEEEeccCCceEEeecc
Q 032092 6 ADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRV-GVHHLDDSQQSKNFTFKCHRDGSETCSVIS 84 (147)
Q Consensus 6 ~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i-~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~ 84 (147)
..|.|.|||+.+-+ ++..+. .|+.++-+|||+|+|.+||++|..|+| |+ +.+.+|+.+++|+- . ..+..+.+
T Consensus 151 t~GdV~l~d~~nl~-~v~~I~-aH~~~lAalafs~~G~llATASeKGTVIRV--f~v~~G~kl~eFRR--G-~~~~~IyS 223 (391)
T KOG2110|consen 151 TSGDVVLFDTINLQ-PVNTIN-AHKGPLAALAFSPDGTLLATASEKGTVIRV--FSVPEGQKLYEFRR--G-TYPVSIYS 223 (391)
T ss_pred CCceEEEEEcccce-eeeEEE-ecCCceeEEEECCCCCEEEEeccCceEEEE--EEcCCccEeeeeeC--C-ceeeEEEE
Confidence 46899999999874 566665 688899999999999999999999994 56 88888999988852 1 12334556
Q ss_pred ceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCc
Q 032092 85 FTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSK 141 (147)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~ 141 (147)
+ +|+||+++|++.|+.++|+|+.+++.
T Consensus 224 L------------------------------~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 224 L------------------------------SFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred E------------------------------EECCCCCeEEEecCCCeEEEEEeccc
Confidence 5 99999999999999999999998754
No 102
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.42 E-value=1e-12 Score=98.53 Aligned_cols=117 Identities=15% Similarity=0.189 Sum_probs=79.9
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCE-EEEEeeCCeEEEEeecCCCCc-ceeEEEeccCCce
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQG-FWVGSIEGRVGVHHLDDSQQS-KNFTFKCHRDGSE 78 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~-l~~g~~dg~i~i~~~d~~~~~-~~~~~~~h~~~~~ 78 (147)
+|+|..|-+|+|.|++.+.. .+.+ ++|...|.++.|+|..++ |++|+.||.|++ ||+|... ....+.-|....
T Consensus 161 iA~gtr~~~VrLCDi~SGs~-sH~L-sGHr~~vlaV~Wsp~~e~vLatgsaDg~irl--WDiRrasgcf~~lD~hn~k~- 235 (397)
T KOG4283|consen 161 IAAGTRDVQVRLCDIASGSF-SHTL-SGHRDGVLAVEWSPSSEWVLATGSADGAIRL--WDIRRASGCFRVLDQHNTKR- 235 (397)
T ss_pred EEEecCCCcEEEEeccCCcc-eeee-ccccCceEEEEeccCceeEEEecCCCceEEE--EEeecccceeEEeecccCcc-
Confidence 47788889999999999963 2444 467778999999998875 789999999999 6665321 122333333110
Q ss_pred EEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCce
Q 032092 79 TCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQ 142 (147)
Q Consensus 79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~ 142 (147)
.++ + +.-..+....++++|+.||.++++++.|..+++|+.++|+
T Consensus 236 -~p~--~-----------------~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 236 -PPI--L-----------------KTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred -Ccc--c-----------------cccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence 000 0 0000111112356999999999999999999999998764
No 103
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.42 E-value=4.2e-14 Score=107.25 Aligned_cols=109 Identities=20% Similarity=0.264 Sum_probs=90.3
Q ss_pred CeEeecCCeEEEEECCCCccceeEe--cC-----CCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEE-e
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRI--NS-----PLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFK-C 72 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~--~~-----~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~-~ 72 (147)
|++|+.||-|.+||..+++. .+.+ .. ....+|.|+.||.|.+++|+|+.||.|++ |.+++|..+..|. .
T Consensus 228 LvsgSvDGFiEVWny~~GKl-rKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv--Wri~tG~ClRrFdrA 304 (508)
T KOG0275|consen 228 LVSGSVDGFIEVWNYTTGKL-RKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV--WRIETGQCLRRFDRA 304 (508)
T ss_pred Eeeccccceeeeehhccchh-hhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE--EEEecchHHHHhhhh
Confidence 68999999999999998853 1211 11 12346999999999999999999999999 7778888887775 6
Q ss_pred ccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092 73 HRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF 147 (147)
Q Consensus 73 h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~ 147 (147)
|.. .+.++ .||.|+..+.+++.|.+++|--+++|+++++|
T Consensus 305 Htk-----Gvt~l------------------------------~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEf 344 (508)
T KOG0275|consen 305 HTK-----GVTCL------------------------------SFSRDNSQILSASFDQTVRIHGLKSGKCLKEF 344 (508)
T ss_pred hcc-----CeeEE------------------------------EEccCcchhhcccccceEEEeccccchhHHHh
Confidence 665 35666 99999999999999999999999999999876
No 104
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.41 E-value=1.4e-12 Score=102.06 Aligned_cols=140 Identities=16% Similarity=0.236 Sum_probs=103.8
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC 80 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~ 80 (147)
||+|..|..|.|||.++.+ +++.+. .|...|.+++|-.....+.+++.|.+|++ |+..+...+.++-+|.....
T Consensus 217 latgg~d~~v~Iw~~~t~e-hv~~~~-ghr~~V~~L~fr~gt~~lys~s~Drsvkv--w~~~~~s~vetlyGHqd~v~-- 290 (479)
T KOG0299|consen 217 LATGGRDRHVQIWDCDTLE-HVKVFK-GHRGAVSSLAFRKGTSELYSASADRSVKV--WSIDQLSYVETLYGHQDGVL-- 290 (479)
T ss_pred EEecCCCceEEEecCcccc-hhhccc-ccccceeeeeeecCccceeeeecCCceEE--EehhHhHHHHHHhCCcccee--
Confidence 5889999999999999986 445433 56778999999887788999999999999 55554556667788876532
Q ss_pred eeccce---eeeec-CCCcceeeeeeeeeeeeeeceE----EEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092 81 SVISFT---SILAG-DAPKYSSFYKVKRLHLFVKSHV----IVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF 147 (147)
Q Consensus 81 ~v~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~ 147 (147)
.+..+. ++++| +|-.+++|+-.+...+.+.+|- .++|=.+ ..|+||+.||.|.+|++.+++.++++
T Consensus 291 ~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~ 364 (479)
T KOG0299|consen 291 GIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTS 364 (479)
T ss_pred eechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEe
Confidence 233322 24455 6667888776555556666662 2455444 67999999999999999999998864
No 105
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.41 E-value=1.5e-11 Score=88.80 Aligned_cols=135 Identities=21% Similarity=0.229 Sum_probs=85.0
Q ss_pred CeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEE--EeeCCeEEEEeecCCCCcceeEEEeccCCceEEeeccc
Q 032092 8 RNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWV--GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISF 85 (147)
Q Consensus 8 g~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~--g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~ 85 (147)
|...||-++..+.+...+......+|.+++|+|+|+.||+ |..+++|.+ ||.+ ++.+.++.........+++..-
T Consensus 37 ~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l--yd~~-~~~i~~~~~~~~n~i~wsP~G~ 113 (194)
T PF08662_consen 37 GEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL--YDVK-GKKIFSFGTQPRNTISWSPDGR 113 (194)
T ss_pred eeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE--EcCc-ccEeEeecCCCceEEEECCCCC
Confidence 4566777755444555444333457999999999999765 456788999 7765 5666666533222345666666
Q ss_pred eeeeecCCC--cceeeeeeeee--eeee--eceEEEEEecCCCeEEEeCC------CCcEEEeecCCceeeec
Q 032092 86 TSILAGDAP--KYSSFYKVKRL--HLFV--KSHVIVLFVQIHHTFATAGS------DGAFNFWDKDSKQRLKV 146 (147)
Q Consensus 86 ~~~~~~~~~--~~~~~~~~~~~--~~~~--~~~~~~~fspdg~~latg~~------Dg~i~iWd~~~~~~~~~ 146 (147)
.++++|... +...+++.... .... ..-+.++|+|||++|+|+.. |..++||+.. |++++.
T Consensus 114 ~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 114 FLVLAGFGNLNGDLEFWDVRKKKKISTFEHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred EEEEEEccCCCcEEEEEECCCCEEeeccccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEe
Confidence 566665432 32333333221 1111 12256899999999999975 7889999984 656543
No 106
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=1.2e-12 Score=95.81 Aligned_cols=138 Identities=18% Similarity=0.225 Sum_probs=90.1
Q ss_pred CeEeecCCeEEEEECCCCccceeEec-CCCCcceEEEEEccC--CCEEEEEeeCCeEEEEeecCCCC-cceeEEEeccCC
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRIN-SPLKYQMRCVAAFPD--QQGFWVGSIEGRVGVHHLDDSQQ-SKNFTFKCHRDG 76 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~-~~~~~~i~~la~spd--g~~l~~g~~dg~i~i~~~d~~~~-~~~~~~~~h~~~ 76 (147)
||+|+.||+|-||.-.+++=. +..+ ..|+..|++|+|.|. |-.|++++.||.|.|..+|...+ .......+|+..
T Consensus 73 LAScsYDgkVIiWke~~g~w~-k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~G 151 (299)
T KOG1332|consen 73 LASCSYDGKVIIWKEENGRWT-KAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIG 151 (299)
T ss_pred eeEeecCceEEEEecCCCchh-hhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccc
Confidence 689999999999998887311 1111 135668999999997 67899999999999966665411 222334567643
Q ss_pred c--eEEeec-------------cceeeeecC-CCcceeeeeee---eeeeeeeceE----EEEEecCC----CeEEEeCC
Q 032092 77 S--ETCSVI-------------SFTSILAGD-APKYSSFYKVK---RLHLFVKSHV----IVLFVQIH----HTFATAGS 129 (147)
Q Consensus 77 ~--~~~~v~-------------~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~----~~~fspdg----~~latg~~ 129 (147)
. .++.+. ...++++|+ |..+.+++.-+ .....+.+|. -++|.|.- .+||+|++
T Consensus 152 vnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~Sq 231 (299)
T KOG1332|consen 152 VNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQ 231 (299)
T ss_pred cceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecC
Confidence 1 122221 123355544 44455554332 1223477885 38999963 57999999
Q ss_pred CCcEEEeecC
Q 032092 130 DGAFNFWDKD 139 (147)
Q Consensus 130 Dg~i~iWd~~ 139 (147)
||++.||-.+
T Consensus 232 Dg~viIwt~~ 241 (299)
T KOG1332|consen 232 DGTVIIWTKD 241 (299)
T ss_pred CCcEEEEEec
Confidence 9999999754
No 107
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.40 E-value=3.2e-13 Score=103.31 Aligned_cols=102 Identities=14% Similarity=0.243 Sum_probs=80.3
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCC-CcceeEEEeccCCceE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQ-QSKNFTFKCHRDGSET 79 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~-~~~~~~~~~h~~~~~~ 79 (147)
|++|++|+.|.|||+|+.. |++.+.-. -.-+.|+|+|.+-.|.+|+.|..++. +|.+. .+++..+++|..
T Consensus 203 Las~~sDrsIvLyD~R~~~-Pl~KVi~~--mRTN~IswnPeafnF~~a~ED~nlY~--~DmR~l~~p~~v~~dhvs---- 273 (433)
T KOG0268|consen 203 LASCASDRSIVLYDLRQAS-PLKKVILT--MRTNTICWNPEAFNFVAANEDHNLYT--YDMRNLSRPLNVHKDHVS---- 273 (433)
T ss_pred eeeeccCCceEEEecccCC-ccceeeee--ccccceecCccccceeecccccccee--hhhhhhcccchhhcccce----
Confidence 6788899999999999985 55544221 23578999999999999999999988 88874 344455555543
Q ss_pred EeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCce
Q 032092 80 CSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQ 142 (147)
Q Consensus 80 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~ 142 (147)
++-++ +|||.|+-|+|||.|++|+|++.+.+.
T Consensus 274 -AV~dV------------------------------dfsptG~EfvsgsyDksIRIf~~~~~~ 305 (433)
T KOG0268|consen 274 -AVMDV------------------------------DFSPTGQEFVSGSYDKSIRIFPVNHGH 305 (433)
T ss_pred -eEEEe------------------------------ccCCCcchhccccccceEEEeecCCCc
Confidence 34455 999999999999999999999998764
No 108
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.40 E-value=1.9e-12 Score=98.15 Aligned_cols=138 Identities=10% Similarity=0.100 Sum_probs=93.2
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEe----ecCCC-------------
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHH----LDDSQ------------- 63 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~----~d~~~------------- 63 (147)
+.+++.|-+-+||.+.++..+. ++. +|.+.|++|+|+|.+..+++++.|++.+||- |...+
T Consensus 163 ~gtASADhTA~iWs~Esg~CL~-~Y~-GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~ 240 (481)
T KOG0300|consen 163 CGTASADHTARIWSLESGACLA-TYT-GHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEE 240 (481)
T ss_pred eeecccccceeEEeecccccee-eec-ccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhh
Confidence 3578999999999999997653 344 4667899999999999999999999999963 11110
Q ss_pred ---------------------CcceeEEEeccCCce---------------------EEee------cc-----------
Q 032092 64 ---------------------QSKNFTFKCHRDGSE---------------------TCSV------IS----------- 84 (147)
Q Consensus 64 ---------------------~~~~~~~~~h~~~~~---------------------~~~v------~~----------- 84 (147)
..++..|++|+.-.. .|.+ +.
T Consensus 241 e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHc 320 (481)
T KOG0300|consen 241 EHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHC 320 (481)
T ss_pred hcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhcccc
Confidence 012334566643100 0000 00
Q ss_pred -----cee-eeecCCCccee--eeeeeeeeeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCCc
Q 032092 85 -----FTS-ILAGDAPKYSS--FYKVKRLHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSK 141 (147)
Q Consensus 85 -----~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~ 141 (147)
.-+ +++++|.+++. |++-.+...+|.|| +++.|..|.+ +++|+.|.+|++||++..
T Consensus 321 stHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNM 388 (481)
T KOG0300|consen 321 STHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNM 388 (481)
T ss_pred ccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc-eeecCCCceEEEeeeccc
Confidence 012 34455555544 44445557788998 4789998865 789999999999999763
No 109
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=3.9e-12 Score=95.57 Aligned_cols=135 Identities=16% Similarity=0.181 Sum_probs=100.1
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEee--CCeEEEEeecCCCCcceeEEEeccCCce
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSI--EGRVGVHHLDDSQQSKNFTFKCHRDGSE 78 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~--dg~i~i~~~d~~~~~~~~~~~~h~~~~~ 78 (147)
|+++++|-+++|||..++++ .+++.+ .++.+..+.|......++.++. |.+|+. +++.+++.+..|.||+....
T Consensus 29 litss~dDsl~LYd~~~g~~-~~ti~s-kkyG~~~~~Fth~~~~~i~sStk~d~tIry--Lsl~dNkylRYF~GH~~~V~ 104 (311)
T KOG1446|consen 29 LITSSEDDSLRLYDSLSGKQ-VKTINS-KKYGVDLACFTHHSNTVIHSSTKEDDTIRY--LSLHDNKYLRYFPGHKKRVN 104 (311)
T ss_pred EEEecCCCeEEEEEcCCCce-eeEeec-ccccccEEEEecCCceEEEccCCCCCceEE--EEeecCceEEEcCCCCceEE
Confidence 56789999999999999975 455543 4567889999887788887777 889998 88888999999999997532
Q ss_pred ---EEeeccceeeeecCCCcceeeeeee----eeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCc
Q 032092 79 ---TCSVISFTSILAGDAPKYSSFYKVK----RLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSK 141 (147)
Q Consensus 79 ---~~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~ 141 (147)
..|++ ..+++++.|....+|++. +....+.+.--+||.|+|-+||.|.....|+++|++.-
T Consensus 105 sL~~sP~~--d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~ 172 (311)
T KOG1446|consen 105 SLSVSPKD--DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLYDLRSF 172 (311)
T ss_pred EEEecCCC--CeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEEEEeccc
Confidence 22222 346666666544444443 22333444456799999999999988889999998754
No 110
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=8.4e-13 Score=99.70 Aligned_cols=78 Identities=19% Similarity=0.230 Sum_probs=67.4
Q ss_pred eEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeece
Q 032092 33 MRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSH 112 (147)
Q Consensus 33 i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (147)
..|+.|+|.|.+||+|..||.|.|||++++ ..-..+.+|.. ++.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~--~iar~lsaH~~-----pi~sl--------------------------- 71 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTF--RIARMLSAHVR-----PITSL--------------------------- 71 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEcccc--chhhhhhcccc-----ceeEE---------------------------
Confidence 689999999999999999999999777765 34445666654 67777
Q ss_pred EEEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092 113 VIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF 147 (147)
Q Consensus 113 ~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~ 147 (147)
+|||||+.|+|+|.|-.|.+||+.++.+++.+
T Consensus 72 ---~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri 103 (405)
T KOG1273|consen 72 ---CWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI 103 (405)
T ss_pred ---EecCCCCEeeeecCCceeEEEeccCCCceeEE
Confidence 99999999999999999999999999888753
No 111
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=9.4e-12 Score=104.00 Aligned_cols=136 Identities=14% Similarity=0.126 Sum_probs=91.4
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccC--C--
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRD--G-- 76 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~--~-- 76 (147)
+|.|++|-.|++-++....+.. ...+|+.+|.+|.|+|+++.||+.+.||++++ ||+.++....++.+-.. .
T Consensus 111 iaagsdD~~vK~~~~~D~s~~~--~lrgh~apVl~l~~~p~~~fLAvss~dG~v~i--w~~~~~~~~~tl~~v~k~n~~~ 186 (933)
T KOG1274|consen 111 IAAGSDDTAVKLLNLDDSSQEK--VLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQI--WDLQDGILSKTLTGVDKDNEFI 186 (933)
T ss_pred EEeecCceeEEEEeccccchhe--eecccCCceeeeeEcCCCCEEEEEecCceEEE--EEcccchhhhhcccCCcccccc
Confidence 4788999999999998875432 23367889999999999999999999999999 66666666555543211 1
Q ss_pred ------ceEEeeccceeeeecCCCcceeeeeee-eeeeee------eceEEEEEecCCCeEEEeCCCCcEEEeecCC
Q 032092 77 ------SETCSVISFTSILAGDAPKYSSFYKVK-RLHLFV------KSHVIVLFVQIHHTFATAGSDGAFNFWDKDS 140 (147)
Q Consensus 77 ------~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~~fspdg~~latg~~Dg~i~iWd~~~ 140 (147)
...|.+.+..+.+.+.+..+.++..-. .....+ ....-++|+|.|+|||+++.||.|.|||.++
T Consensus 187 ~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 187 LSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred ccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 012333333333444444444433110 000111 1123489999999999999999999999985
No 112
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.38 E-value=4.1e-12 Score=105.30 Aligned_cols=140 Identities=11% Similarity=0.078 Sum_probs=93.0
Q ss_pred eEeecCCeEEEEECCCCccceeEe--cCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEE-eccCCce
Q 032092 2 VVGTADRNLVVFNLQNPQTEFKRI--NSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFK-CHRDGSE 78 (147)
Q Consensus 2 ~~gs~dg~v~iwdi~~~~~~~~~~--~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~-~h~~~~~ 78 (147)
+.|...|.|-+||++++-. .+.+ ...|+.+|+.||...-++.+++++.+|.++.|++.. ...+..+. ++.....
T Consensus 464 ~IG~S~G~Id~fNmQSGi~-r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~--k~l~~~l~l~~~~~~i 540 (910)
T KOG1539|consen 464 FIGYSKGTIDRFNMQSGIH-RKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKK--KVLKKSLRLGSSITGI 540 (910)
T ss_pred EEeccCCeEEEEEcccCee-ecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCC--cceeeeeccCCCccee
Confidence 4678899999999999832 2333 235778899999987788899999999999955543 33333332 1211111
Q ss_pred EEeeccceeeeecCCC-cceeeee-eeeeeeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCCceeee
Q 032092 79 TCSVISFTSILAGDAP-KYSSFYK-VKRLHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLK 145 (147)
Q Consensus 79 ~~~v~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~ 145 (147)
.+.-.+ .+++..-++ .+.++.. ..++.+.|.|| +.++|||||++|++++.|++|++||+-++.++-
T Consensus 541 v~hr~s-~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID 612 (910)
T KOG1539|consen 541 VYHRVS-DLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLID 612 (910)
T ss_pred eeeehh-hhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceee
Confidence 110011 122222233 3444432 23556667777 569999999999999999999999999988764
No 113
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.38 E-value=2.3e-12 Score=99.27 Aligned_cols=108 Identities=14% Similarity=0.158 Sum_probs=91.0
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeE-EEeccCCceE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFT-FKCHRDGSET 79 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~-~~~h~~~~~~ 79 (147)
+|+++.-+.+|+||.+.+.+|+..+... ..++.+++..|+|+.+++|..-|.+.. ||.+.++.... |++- .
T Consensus 219 fat~T~~hqvR~YDt~~qRRPV~~fd~~-E~~is~~~l~p~gn~Iy~gn~~g~l~~--FD~r~~kl~g~~~kg~-----t 290 (412)
T KOG3881|consen 219 FATITRYHQVRLYDTRHQRRPVAQFDFL-ENPISSTGLTPSGNFIYTGNTKGQLAK--FDLRGGKLLGCGLKGI-----T 290 (412)
T ss_pred EEEEecceeEEEecCcccCcceeEeccc-cCcceeeeecCCCcEEEEecccchhhe--ecccCceeeccccCCc-----c
Confidence 5788999999999999998898887643 468999999999999999999999999 99987665543 3332 2
Q ss_pred EeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092 80 CSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146 (147)
Q Consensus 80 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~ 146 (147)
.++.++ ..||.++++|+||-|..+||+|++++++++.
T Consensus 291 Gsirsi------------------------------h~hp~~~~las~GLDRyvRIhD~ktrkll~k 327 (412)
T KOG3881|consen 291 GSIRSI------------------------------HCHPTHPVLASCGLDRYVRIHDIKTRKLLHK 327 (412)
T ss_pred CCcceE------------------------------EEcCCCceEEeeccceeEEEeecccchhhhh
Confidence 356666 8899999999999999999999999887753
No 114
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.38 E-value=1.2e-11 Score=92.45 Aligned_cols=105 Identities=13% Similarity=0.081 Sum_probs=75.8
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEE-EEEeeCCeEEEEeecCCCCcceeEEEeccCCceE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGF-WVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSET 79 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l-~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~ 79 (147)
+++++.|+.|++||+.+++. ...+... ..+++++|+|+++.+ ++++.++.|++ ||..+++....+..+..
T Consensus 4 ~~s~~~d~~v~~~d~~t~~~-~~~~~~~--~~~~~l~~~~dg~~l~~~~~~~~~v~~--~d~~~~~~~~~~~~~~~---- 74 (300)
T TIGR03866 4 YVSNEKDNTISVIDTATLEV-TRTFPVG--QRPRGITLSKDGKLLYVCASDSDTIQV--IDLATGEVIGTLPSGPD---- 74 (300)
T ss_pred EEEecCCCEEEEEECCCCce-EEEEECC--CCCCceEECCCCCEEEEEECCCCeEEE--EECCCCcEEEeccCCCC----
Confidence 36788999999999998753 4444322 246789999999876 67788999999 77766665544443221
Q ss_pred EeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEE-EeCCCCcEEEeecCCceeeec
Q 032092 80 CSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFA-TAGSDGAFNFWDKDSKQRLKV 146 (147)
Q Consensus 80 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~la-tg~~Dg~i~iWd~~~~~~~~~ 146 (147)
+..+ +|+|+++.++ +++.|+.+++||+++++.+.+
T Consensus 75 --~~~~------------------------------~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~ 110 (300)
T TIGR03866 75 --PELF------------------------------ALHPNGKILYIANEDDNLVTVIDIETRKVLAE 110 (300)
T ss_pred --ccEE------------------------------EECCCCCEEEEEcCCCCeEEEEECCCCeEEeE
Confidence 2233 8999998665 555689999999998776653
No 115
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.38 E-value=9.2e-12 Score=95.76 Aligned_cols=140 Identities=14% Similarity=0.189 Sum_probs=99.0
Q ss_pred CeEeecCCeEEEEECCCCccceeEe--cCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCC----------------
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRI--NSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDS---------------- 62 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~--~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~---------------- 62 (147)
+++|+.|.++++|-+..++...+.. ..+|+.+|.+|+..++|..|++|+.|.++.||+....
T Consensus 162 fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~ 241 (423)
T KOG0313|consen 162 FVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQ 241 (423)
T ss_pred EEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhh
Confidence 5789999999999998876422222 2267788999999999999999999999999651111
Q ss_pred -------CCcceeEEEeccCCce--EEeeccceeeeecCCCcceeee-eeeeeeeee---eceEEEEEecCCCeEEEeCC
Q 032092 63 -------QQSKNFTFKCHRDGSE--TCSVISFTSILAGDAPKYSSFY-KVKRLHLFV---KSHVIVLFVQIHHTFATAGS 129 (147)
Q Consensus 63 -------~~~~~~~~~~h~~~~~--~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~fspdg~~latg~~ 129 (147)
++.++.++.||+.... .++. +--..++|=|++++.+. ++.+....+ +.-+.++++|..++||+|++
T Consensus 242 ~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gss 320 (423)
T KOG0313|consen 242 KREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSS 320 (423)
T ss_pred hhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCC
Confidence 1235567788886432 3332 21234556666777666 333333322 33467899999999999999
Q ss_pred CCcEEEeecCCc
Q 032092 130 DGAFNFWDKDSK 141 (147)
Q Consensus 130 Dg~i~iWd~~~~ 141 (147)
|..+++||-+++
T Consensus 321 dr~irl~DPR~~ 332 (423)
T KOG0313|consen 321 DRHIRLWDPRTG 332 (423)
T ss_pred CCceeecCCCCC
Confidence 999999998764
No 116
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.37 E-value=2.1e-11 Score=92.07 Aligned_cols=137 Identities=15% Similarity=0.214 Sum_probs=88.1
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEE-eccC----
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFK-CHRD---- 75 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~-~h~~---- 75 (147)
|++|++||.|.+|++..-+ .++.+. +|+.+|+.|+++|.|+.-++-+.|+.+++ ||+-+|+.-+.++ .|..
T Consensus 100 LlS~sdDG~i~iw~~~~W~-~~~slK-~H~~~Vt~lsiHPS~KLALsVg~D~~lr~--WNLV~Gr~a~v~~L~~~at~v~ 175 (362)
T KOG0294|consen 100 LLSGSDDGHIIIWRVGSWE-LLKSLK-AHKGQVTDLSIHPSGKLALSVGGDQVLRT--WNLVRGRVAFVLNLKNKATLVS 175 (362)
T ss_pred eeeecCCCcEEEEEcCCeE-Eeeeec-ccccccceeEecCCCceEEEEcCCceeee--ehhhcCccceeeccCCcceeeE
Confidence 6899999999999999874 455554 56778999999999999888899999999 6665544322211 0000
Q ss_pred ---Cce-------------------------------EEeeccceeeeecCCCcceeeeeee--eeeeeeeceE----EE
Q 032092 76 ---GSE-------------------------------TCSVISFTSILAGDAPKYSSFYKVK--RLHLFVKSHV----IV 115 (147)
Q Consensus 76 ---~~~-------------------------------~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~----~~ 115 (147)
.+. +.....-..++.|+|++...+++.. ...-.+.+|- .+
T Consensus 176 w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i 255 (362)
T KOG0294|consen 176 WSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDI 255 (362)
T ss_pred EcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeee
Confidence 000 0000111124445555444333332 2233456772 12
Q ss_pred --EEecCCCeEEEeCCCCcEEEeecCCc
Q 032092 116 --LFVQIHHTFATAGSDGAFNFWDKDSK 141 (147)
Q Consensus 116 --~fspdg~~latg~~Dg~i~iWd~~~~ 141 (147)
--.|++.+|+|+|+||.|++||++..
T Consensus 256 ~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 256 ASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred EEEecCCceEEEEeccCceEEEEEcccc
Confidence 23578899999999999999998765
No 117
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.37 E-value=4.1e-12 Score=97.21 Aligned_cols=98 Identities=12% Similarity=0.205 Sum_probs=83.5
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC 80 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~ 80 (147)
.|+|+-||+|-|||+...+ +.+.. +|..+|..+.|-+ ..+|++++.||.|++ ||.|+|+.+.++.||..
T Consensus 301 ~A~G~vdG~i~iyD~a~~~-~R~~c--~he~~V~~l~w~~-t~~l~t~c~~g~v~~--wDaRtG~l~~~y~GH~~----- 369 (399)
T KOG0296|consen 301 AACGSVDGTIAIYDLAAST-LRHIC--EHEDGVTKLKWLN-TDYLLTACANGKVRQ--WDARTGQLKFTYTGHQM----- 369 (399)
T ss_pred hhcccccceEEEEecccch-hheec--cCCCceEEEEEcC-cchheeeccCceEEe--eeccccceEEEEecCch-----
Confidence 3788999999999999874 33322 4566799999988 789999999999999 99999999999999985
Q ss_pred eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecC
Q 032092 81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKD 139 (147)
Q Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~ 139 (147)
.+... +.+|+.++++|+|.|++.+|++..
T Consensus 370 ~Il~f------------------------------~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 370 GILDF------------------------------ALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred heeEE------------------------------EEcCCCcEEEEecCCCeEEEEecC
Confidence 35555 999999999999999999999763
No 118
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.36 E-value=4.2e-12 Score=103.49 Aligned_cols=136 Identities=17% Similarity=0.229 Sum_probs=100.0
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceE-
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSET- 79 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~- 79 (147)
|++|+.|.+|.+|.+.+.+ |+..+. +|+..|-|++...++. +++||+|.++++ |-. ++..+.+.+|.....+
T Consensus 74 l~~g~~D~~i~v~~~~~~~-P~~~Lk-gH~snVC~ls~~~~~~-~iSgSWD~Takv--W~~--~~l~~~l~gH~asVWAv 146 (745)
T KOG0301|consen 74 LVVGGMDTTIIVFKLSQAE-PLYTLK-GHKSNVCSLSIGEDGT-LISGSWDSTAKV--WRI--GELVYSLQGHTASVWAV 146 (745)
T ss_pred eEeecccceEEEEecCCCC-chhhhh-ccccceeeeecCCcCc-eEecccccceEE--ecc--hhhhcccCCcchheeee
Confidence 5689999999999999875 655543 5777899999888887 999999999999 644 5667778899864211
Q ss_pred EeeccceeeeecCCCcceeeeeeeeeeeeeeceE----EEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092 80 CSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHV----IVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146 (147)
Q Consensus 80 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~ 146 (147)
........+++|.|..++.|+. .+....|+||+ .+++-|++ .|++|+.||.|++|++ ++.++.+
T Consensus 147 ~~l~e~~~vTgsaDKtIklWk~-~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~ 214 (745)
T KOG0301|consen 147 ASLPENTYVTGSADKTIKLWKG-GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLE 214 (745)
T ss_pred eecCCCcEEeccCcceeeeccC-CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeee
Confidence 1122333344455555555554 77778899996 47887874 5899999999999998 6665543
No 119
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.36 E-value=1e-10 Score=87.41 Aligned_cols=139 Identities=12% Similarity=0.111 Sum_probs=83.5
Q ss_pred eEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEE-EeeCCeEEEEeecCCCCcceeEEEecc-CCceE
Q 032092 2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWV-GSIEGRVGVHHLDDSQQSKNFTFKCHR-DGSET 79 (147)
Q Consensus 2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~-g~~dg~i~i~~~d~~~~~~~~~~~~h~-~~~~~ 79 (147)
++++.++.|++||+.+++. ...+... ..+..++++|+++.+++ +..|+++++ ||+++++.+..+..+. .....
T Consensus 47 ~~~~~~~~v~~~d~~~~~~-~~~~~~~--~~~~~~~~~~~g~~l~~~~~~~~~l~~--~d~~~~~~~~~~~~~~~~~~~~ 121 (300)
T TIGR03866 47 VCASDSDTIQVIDLATGEV-IGTLPSG--PDPELFALHPNGKILYIANEDDNLVTV--IDIETRKVLAEIPVGVEPEGMA 121 (300)
T ss_pred EEECCCCeEEEEECCCCcE-EEeccCC--CCccEEEECCCCCEEEEEcCCCCeEEE--EECCCCeEEeEeeCCCCcceEE
Confidence 4567889999999998753 3333222 23578899999997755 456899999 7776666655554221 11223
Q ss_pred EeeccceeeeecCCCcceeeeeeeee--eeee---eceEEEEEecCCCeEE-EeCCCCcEEEeecCCceeee
Q 032092 80 CSVISFTSILAGDAPKYSSFYKVKRL--HLFV---KSHVIVLFVQIHHTFA-TAGSDGAFNFWDKDSKQRLK 145 (147)
Q Consensus 80 ~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~fspdg~~la-tg~~Dg~i~iWd~~~~~~~~ 145 (147)
+..+...+++++.+.....+++.+.. ...+ .....++|+|+|++|+ ++..|+.|++||+++++.++
T Consensus 122 ~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~ 193 (300)
T TIGR03866 122 VSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIK 193 (300)
T ss_pred ECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeee
Confidence 33333323333333332223232211 1111 1123579999998774 55569999999999887654
No 120
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.35 E-value=3.6e-12 Score=103.91 Aligned_cols=142 Identities=19% Similarity=0.321 Sum_probs=99.7
Q ss_pred CeEeecCCeEEEEECCCCcc-ceeEecCCCCcceEEEEEcc-CCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCce
Q 032092 1 MVVGTADRNLVVFNLQNPQT-EFKRINSPLKYQMRCVAAFP-DQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE 78 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~-~~~~~~~~~~~~i~~la~sp-dg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~ 78 (147)
++++|.||++++|+-+..+- +.+.+..+...-..++++-+ ++..+.+|+.|++|.+ |.+.+..+.+++++|.....
T Consensus 28 i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v--~~~~~~~P~~~LkgH~snVC 105 (745)
T KOG0301|consen 28 IISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIV--FKLSQAEPLYTLKGHKSNVC 105 (745)
T ss_pred EeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEE--EecCCCCchhhhhcccccee
Confidence 46788999999999876542 11223333332233377776 4556999999999999 88888899999999998766
Q ss_pred EEeeccceeeeecCCCcceeeeeeeeeeeeeeceEE----EEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092 79 TCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVI----VLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF 147 (147)
Q Consensus 79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~ 147 (147)
+..+.....+++|+=|.....|..........||.+ +++-|++ .++|||+|++|++|+. ++++++|
T Consensus 106 ~ls~~~~~~~iSgSWD~TakvW~~~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf 175 (745)
T KOG0301|consen 106 SLSIGEDGTLISGSWDSTAKVWRIGELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTF 175 (745)
T ss_pred eeecCCcCceEecccccceEEecchhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhh
Confidence 555554445566666644444444455556888864 5666776 8999999999999986 5555554
No 121
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.35 E-value=2.7e-12 Score=97.29 Aligned_cols=102 Identities=21% Similarity=0.218 Sum_probs=82.4
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccC-CCEEEEEeeCCeEEEEeecCCCCcceeEE---EeccCC
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPD-QQGFWVGSIEGRVGVHHLDDSQQSKNFTF---KCHRDG 76 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spd-g~~l~~g~~dg~i~i~~~d~~~~~~~~~~---~~h~~~ 76 (147)
||+|+.-|.|+|.|+.+++. .+.+. +|...|+.|.+.|+ .++++++|.|.+|+| |++++..-+..| .||+.+
T Consensus 108 la~~G~~GvIrVid~~~~~~-~~~~~-ghG~sINeik~~p~~~qlvls~SkD~svRl--wnI~~~~Cv~VfGG~egHrde 183 (385)
T KOG1034|consen 108 LAAGGYLGVIRVIDVVSGQC-SKNYR-GHGGSINEIKFHPDRPQLVLSASKDHSVRL--WNIQTDVCVAVFGGVEGHRDE 183 (385)
T ss_pred EEeecceeEEEEEecchhhh-cccee-ccCccchhhhcCCCCCcEEEEecCCceEEE--EeccCCeEEEEecccccccCc
Confidence 57788899999999999864 33333 46678999999997 578999999999999 788777766655 456653
Q ss_pred ceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCc
Q 032092 77 SETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSK 141 (147)
Q Consensus 77 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~ 141 (147)
|-++ .|+++|.+||+||+|-.+++|++..+
T Consensus 184 -----VLSv------------------------------D~~~~gd~i~ScGmDhslk~W~l~~~ 213 (385)
T KOG1034|consen 184 -----VLSV------------------------------DFSLDGDRIASCGMDHSLKLWRLNVK 213 (385)
T ss_pred -----EEEE------------------------------EEcCCCCeeeccCCcceEEEEecChh
Confidence 3343 99999999999999999999999754
No 122
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.34 E-value=1.6e-12 Score=105.61 Aligned_cols=103 Identities=16% Similarity=0.200 Sum_probs=84.0
Q ss_pred CeEeecCCeEEEEECCCCcc------ceeEecCCCCcceEEEEEccC-CCEEEEEeeCCeEEEEeecCCCCcceeEEEec
Q 032092 1 MVVGTADRNLVVFNLQNPQT------EFKRINSPLKYQMRCVAAFPD-QQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCH 73 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~------~~~~~~~~~~~~i~~la~spd-g~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h 73 (147)
||+|++||.|+||-+..+.. |-+.+ ..|...|.+|.|+|= .+.|++++.|-+|+| ||+++++....|.+|
T Consensus 643 LAVa~ddg~i~lWr~~a~gl~e~~~tPe~~l-t~h~eKI~slRfHPLAadvLa~asyd~Ti~l--WDl~~~~~~~~l~gH 719 (1012)
T KOG1445|consen 643 LAVATDDGQINLWRLTANGLPENEMTPEKIL-TIHGEKITSLRFHPLAADVLAVASYDSTIEL--WDLANAKLYSRLVGH 719 (1012)
T ss_pred eeecccCceEEEEEeccCCCCcccCCcceee-ecccceEEEEEecchhhhHhhhhhccceeee--eehhhhhhhheeccC
Confidence 68999999999999876432 11112 234456999999995 789999999999999 888888888889999
Q ss_pred cCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCc
Q 032092 74 RDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSK 141 (147)
Q Consensus 74 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~ 141 (147)
... +-++ +|||||+.+||-+-||+|++++-+++
T Consensus 720 tdq-----If~~------------------------------AWSpdGr~~AtVcKDg~~rVy~Prs~ 752 (1012)
T KOG1445|consen 720 TDQ-----IFGI------------------------------AWSPDGRRIATVCKDGTLRVYEPRSR 752 (1012)
T ss_pred cCc-----eeEE------------------------------EECCCCcceeeeecCceEEEeCCCCC
Confidence 863 4454 99999999999999999999997664
No 123
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.34 E-value=2.8e-12 Score=94.41 Aligned_cols=107 Identities=21% Similarity=0.281 Sum_probs=87.8
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC 80 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~ 80 (147)
|++|+.++.+||||+++++.|-+.+. .+...|+.+-|-...++|++++.|++||+ ||.++++..+++.-..
T Consensus 115 lltgg~ekllrvfdln~p~App~E~~-ghtg~Ir~v~wc~eD~~iLSSadd~tVRL--WD~rTgt~v~sL~~~s------ 185 (334)
T KOG0278|consen 115 LLTGGQEKLLRVFDLNRPKAPPKEIS-GHTGGIRTVLWCHEDKCILSSADDKTVRL--WDHRTGTEVQSLEFNS------ 185 (334)
T ss_pred hhccchHHHhhhhhccCCCCCchhhc-CCCCcceeEEEeccCceEEeeccCCceEE--EEeccCcEEEEEecCC------
Confidence 57899999999999999887655554 34567999999888889999999999999 8889998888775322
Q ss_pred eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092 81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF 147 (147)
Q Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~ 147 (147)
+++++ ..++||++|.++. -+.|++||.++..+++.|
T Consensus 186 ~VtSl------------------------------Evs~dG~ilTia~-gssV~Fwdaksf~~lKs~ 221 (334)
T KOG0278|consen 186 PVTSL------------------------------EVSQDGRILTIAY-GSSVKFWDAKSFGLLKSY 221 (334)
T ss_pred CCcce------------------------------eeccCCCEEEEec-CceeEEeccccccceeec
Confidence 47777 9999999877764 467999999999888765
No 124
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=7.9e-12 Score=104.44 Aligned_cols=107 Identities=16% Similarity=0.270 Sum_probs=89.9
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC 80 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~ 80 (147)
+++|+.+++|.+|.+.+++. ..+..+...|+++++|+-+|+++|.|++|-.|++ .+.........+++|..
T Consensus 69 f~~~s~~~tv~~y~fps~~~--~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~--~~~~D~s~~~~lrgh~a----- 139 (933)
T KOG1274|consen 69 FLTGSEQNTVLRYKFPSGEE--DTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKL--LNLDDSSQEKVLRGHDA----- 139 (933)
T ss_pred eEEeeccceEEEeeCCCCCc--cceeeeeeccceEEEEecCCcEEEeecCceeEEE--EeccccchheeecccCC-----
Confidence 57899999999999999864 2222234468999999999999999999999999 66666666778888876
Q ss_pred eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092 81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146 (147)
Q Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~ 146 (147)
++..+ .|+|.+++||+.+.||.|+|||++++.+.++
T Consensus 140 pVl~l------------------------------~~~p~~~fLAvss~dG~v~iw~~~~~~~~~t 175 (933)
T KOG1274|consen 140 PVLQL------------------------------SYDPKGNFLAVSSCDGKVQIWDLQDGILSKT 175 (933)
T ss_pred ceeee------------------------------eEcCCCCEEEEEecCceEEEEEcccchhhhh
Confidence 46666 9999999999999999999999999987765
No 125
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.33 E-value=5.9e-12 Score=100.64 Aligned_cols=107 Identities=18% Similarity=0.350 Sum_probs=78.0
Q ss_pred CeEeecCCeEEEEECCCCc-------cceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeec----CCCC----c
Q 032092 1 MVVGTADRNLVVFNLQNPQ-------TEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLD----DSQQ----S 65 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~-------~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d----~~~~----~ 65 (147)
|++|+.||++++|+++... +|+.++. .|+.||.|++++++++.+.+|+.||+|++|.+- +... .
T Consensus 309 lit~sed~~lk~WnLqk~~~s~~~~~epi~tfr-aH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~v 387 (577)
T KOG0642|consen 309 LITASEDGTLKLWNLQKAKKSAEKDVEPILTFR-AHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSV 387 (577)
T ss_pred EEEeccccchhhhhhcccCCccccceeeeEEEe-cccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcch
Confidence 6899999999999993321 1333333 578899999999999999999999999995322 1111 1
Q ss_pred ceeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCcee
Q 032092 66 KNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQR 143 (147)
Q Consensus 66 ~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~ 143 (147)
....+.||... +..+ ++|+....|++|++||++++|+..+...
T Consensus 388 l~~~l~Ghtda-----vw~l------------------------------~~s~~~~~Llscs~DgTvr~w~~~~~~~ 430 (577)
T KOG0642|consen 388 LSGTLLGHTDA-----VWLL------------------------------ALSSTKDRLLSCSSDGTVRLWEPTEESP 430 (577)
T ss_pred hccceeccccc-----eeee------------------------------eecccccceeeecCCceEEeeccCCcCc
Confidence 22344555542 3344 8999888899999999999999866544
No 126
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.33 E-value=7.1e-12 Score=98.27 Aligned_cols=111 Identities=21% Similarity=0.221 Sum_probs=82.4
Q ss_pred eEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeec-C------CCCcceeEEEecc
Q 032092 2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLD-D------SQQSKNFTFKCHR 74 (147)
Q Consensus 2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d-~------~~~~~~~~~~~h~ 74 (147)
+.|+..|.+++|.+.+|.. ...+ ..|..+|+||.|+-||.+|++|+.||.|.+|..- . .+-++...|..|+
T Consensus 97 ~ag~i~g~lYlWelssG~L-L~v~-~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Ht 174 (476)
T KOG0646|consen 97 LAGTISGNLYLWELSSGIL-LNVL-SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHT 174 (476)
T ss_pred EeecccCcEEEEEeccccH-HHHH-HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCc
Confidence 3445899999999999964 3444 4566689999999999999999999999996431 1 1223445555565
Q ss_pred CCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092 75 DGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF 147 (147)
Q Consensus 75 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~ 147 (147)
. ++.++ .+.+.+...+|+|+|.|.+|++||+..+.+|.++
T Consensus 175 l-----sITDl----------------------------~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti 214 (476)
T KOG0646|consen 175 L-----SITDL----------------------------QIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI 214 (476)
T ss_pred c-----eeEEE----------------------------EecCCCccceEEEecCCceEEEEEeccceeeEEE
Confidence 4 45554 1244545578999999999999999999887653
No 127
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=1.3e-11 Score=95.63 Aligned_cols=140 Identities=17% Similarity=0.109 Sum_probs=88.7
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEe-ccCC---
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKC-HRDG--- 76 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~-h~~~--- 76 (147)
|++|+.||++|||+..+.+.... +..+..+|.+|.|||||+.|++-+.| ..+| |+..++..+.+... .++.
T Consensus 159 latgg~dg~lRv~~~Ps~~t~l~--e~~~~~eV~DL~FS~dgk~lasig~d-~~~V--W~~~~g~~~a~~t~~~k~~~~~ 233 (398)
T KOG0771|consen 159 LATGGTDGTLRVWEWPSMLTILE--EIAHHAEVKDLDFSPDGKFLASIGAD-SARV--WSVNTGAALARKTPFSKDEMFS 233 (398)
T ss_pred eeeccccceEEEEecCcchhhhh--hHhhcCccccceeCCCCcEEEEecCC-ceEE--EEeccCchhhhcCCcccchhhh
Confidence 68999999999999887754322 22344679999999999999999998 8999 67766644433321 1110
Q ss_pred ceEEeecc---ceeeeecCCC--cceeee----------eeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCc
Q 032092 77 SETCSVIS---FTSILAGDAP--KYSSFY----------KVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSK 141 (147)
Q Consensus 77 ~~~~~v~~---~~~~~~~~~~--~~~~~~----------~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~ 141 (147)
..-+.... ...+++.-.+ .++..+ .+.+...-+++..+++-++||+++|-|+.||.|-|++..+-
T Consensus 234 ~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~l 313 (398)
T KOG0771|consen 234 SCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSL 313 (398)
T ss_pred hceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEecee
Confidence 01111111 1122222222 111111 00111112345567899999999999999999999999988
Q ss_pred eeee
Q 032092 142 QRLK 145 (147)
Q Consensus 142 ~~~~ 145 (147)
++++
T Consensus 314 q~~~ 317 (398)
T KOG0771|consen 314 QRLQ 317 (398)
T ss_pred eeeE
Confidence 8775
No 128
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.33 E-value=1.3e-11 Score=94.62 Aligned_cols=107 Identities=15% Similarity=0.219 Sum_probs=79.9
Q ss_pred eEeecCCeEEEEECCCCccceeEecCC--CCcceEEEEEccCCCEEEE--EeeCCeEEEEeecCCCCcceeEEEeccCCc
Q 032092 2 VVGTADRNLVVFNLQNPQTEFKRINSP--LKYQMRCVAAFPDQQGFWV--GSIEGRVGVHHLDDSQQSKNFTFKCHRDGS 77 (147)
Q Consensus 2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~--~~~~i~~la~spdg~~l~~--g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~ 77 (147)
+++-+ ..|+|||+++++ +.++++.- +...+.++++++.+.++|. ....|.|.| ||..+-++..++.+|+.
T Consensus 101 vV~Le-e~IyIydI~~Mk-lLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l--~d~~nl~~v~~I~aH~~-- 174 (391)
T KOG2110|consen 101 VVCLE-ESIYIYDIKDMK-LLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVL--FDTINLQPVNTINAHKG-- 174 (391)
T ss_pred EEEEc-ccEEEEecccce-eehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEE--EEcccceeeeEEEecCC--
Confidence 34434 459999999995 56776542 2222444444444568875 445789999 78777788888889986
Q ss_pred eEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCc-EEEeecCCceeeecC
Q 032092 78 ETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGA-FNFWDKDSKQRLKVF 147 (147)
Q Consensus 78 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~-i~iWd~~~~~~~~~~ 147 (147)
++-.+ +|+|+|.+||||+..|+ |||+.+.+|+++++|
T Consensus 175 ---~lAal------------------------------afs~~G~llATASeKGTVIRVf~v~~G~kl~eF 212 (391)
T KOG2110|consen 175 ---PLAAL------------------------------AFSPDGTLLATASEKGTVIRVFSVPEGQKLYEF 212 (391)
T ss_pred ---ceeEE------------------------------EECCCCCEEEEeccCceEEEEEEcCCccEeeee
Confidence 35555 99999999999999996 789999999999987
No 129
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.32 E-value=1.3e-10 Score=94.72 Aligned_cols=142 Identities=16% Similarity=0.213 Sum_probs=92.9
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC 80 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~ 80 (147)
||++=.||.|.||+++..=-....+..+....|.+|+|++.+ .|-+.+.+|.|.- ||+.++++.+.+.+-...-..-
T Consensus 40 lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~-RLFS~g~sg~i~E--wDl~~lk~~~~~d~~gg~IWsi 116 (691)
T KOG2048|consen 40 LAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG-RLFSSGLSGSITE--WDLHTLKQKYNIDSNGGAIWSI 116 (691)
T ss_pred eeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC-eEEeecCCceEEE--EecccCceeEEecCCCcceeEE
Confidence 577888999999999985221223444445679999999655 5556677899987 8888887777665432211111
Q ss_pred eecc-ceeeeecCCCcceeeeeee--ee--eeee---ec-eEEEEEecCCCeEEEeCCCCcEEEeecCCceeee
Q 032092 81 SVIS-FTSILAGDAPKYSSFYKVK--RL--HLFV---KS-HVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLK 145 (147)
Q Consensus 81 ~v~~-~~~~~~~~~~~~~~~~~~~--~~--~~~~---~~-~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~ 145 (147)
.++. -+.++.|.|++...+.... .. -..+ .+ .++++|+|++..+++|+.||.|++||++++.-++
T Consensus 117 ai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~ 190 (691)
T KOG2048|consen 117 AINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLH 190 (691)
T ss_pred EeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEE
Confidence 1111 1334557677643333211 11 1112 22 2579999999999999999999999999887665
No 130
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.32 E-value=8.2e-12 Score=97.11 Aligned_cols=103 Identities=14% Similarity=0.166 Sum_probs=80.3
Q ss_pred CeEeecCCeEEEEECCCCcc--ceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCce
Q 032092 1 MVVGTADRNLVVFNLQNPQT--EFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE 78 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~--~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~ 78 (147)
||+|+.|.+.-||++-.... ..++.. +|..+|.-|.||||.+++++++-|..+.+ ||..+|.....+.. . +
T Consensus 239 LAsaSkD~Taiiw~v~~d~~~kl~~tlv-gh~~~V~yi~wSPDdryLlaCg~~e~~~l--wDv~tgd~~~~y~~-~---~ 311 (519)
T KOG0293|consen 239 LASASKDSTAIIWIVVYDVHFKLKKTLV-GHSQPVSYIMWSPDDRYLLACGFDEVLSL--WDVDTGDLRHLYPS-G---L 311 (519)
T ss_pred EeeccCCceEEEEEEecCcceeeeeeee-cccCceEEEEECCCCCeEEecCchHheee--ccCCcchhhhhccc-C---c
Confidence 68999999999999876532 233443 45568999999999999999999999988 77777776555531 1 1
Q ss_pred EEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCC
Q 032092 79 TCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDS 140 (147)
Q Consensus 79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~ 140 (147)
.+++.+. +|.|||..|++|+.|+.|..||++.
T Consensus 312 ~~S~~sc------------------------------~W~pDg~~~V~Gs~dr~i~~wdlDg 343 (519)
T KOG0293|consen 312 GFSVSSC------------------------------AWCPDGFRFVTGSPDRTIIMWDLDG 343 (519)
T ss_pred CCCccee------------------------------EEccCCceeEecCCCCcEEEecCCc
Confidence 2234444 9999999999999999999999854
No 131
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.32 E-value=6.5e-12 Score=103.23 Aligned_cols=115 Identities=17% Similarity=0.229 Sum_probs=74.4
Q ss_pred cceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceE----EeeccceeeeecCCCc-ceeee-----
Q 032092 31 YQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSET----CSVISFTSILAGDAPK-YSSFY----- 100 (147)
Q Consensus 31 ~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~----~~v~~~~~~~~~~~~~-~~~~~----- 100 (147)
..+++|++||||+.||+|.--|.+++ +|+.+-+.......|..+..+ +++....++++++.+. +.++.
T Consensus 460 ~G~R~~~vSp~gqhLAsGDr~GnlrV--y~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny 537 (1080)
T KOG1408|consen 460 FGFRALAVSPDGQHLASGDRGGNLRV--YDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY 537 (1080)
T ss_pred cceEEEEECCCcceecccCccCceEE--EEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc
Confidence 45999999999999999999999999 776554444445556544321 1222223344433332 11111
Q ss_pred ------------------------------------------eeeeeeeeeece--------EEEEEecCCCeEEEeCCC
Q 032092 101 ------------------------------------------KVKRLHLFVKSH--------VIVLFVQIHHTFATAGSD 130 (147)
Q Consensus 101 ------------------------------------------~~~~~~~~~~~~--------~~~~fspdg~~latg~~D 130 (147)
+-.....+..+| .-++.-|.-+++++++.|
T Consensus 538 ~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQD 617 (1080)
T KOG1408|consen 538 DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQD 617 (1080)
T ss_pred chhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecc
Confidence 111111112222 127888989999999999
Q ss_pred CcEEEeecCCceeeecC
Q 032092 131 GAFNFWDKDSKQRLKVF 147 (147)
Q Consensus 131 g~i~iWd~~~~~~~~~~ 147 (147)
..|+|+|++++|..++|
T Consensus 618 rnirif~i~sgKq~k~F 634 (1080)
T KOG1408|consen 618 RNIRIFDIESGKQVKSF 634 (1080)
T ss_pred cceEEEeccccceeeee
Confidence 99999999999998887
No 132
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.32 E-value=6.8e-12 Score=95.04 Aligned_cols=99 Identities=21% Similarity=0.366 Sum_probs=74.7
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCC---CC-----cceeEEEe
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDS---QQ-----SKNFTFKC 72 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~---~~-----~~~~~~~~ 72 (147)
|++|+.|.+|.|||++ |+. ...+.. .+......+.||+|+++|+++-.-.+++ |++- .| ...+.++|
T Consensus 202 imsas~dt~i~lw~lk-Gq~-L~~idt-nq~~n~~aavSP~GRFia~~gFTpDVkV--wE~~f~kdG~fqev~rvf~LkG 276 (420)
T KOG2096|consen 202 IMSASLDTKICLWDLK-GQL-LQSIDT-NQSSNYDAAVSPDGRFIAVSGFTPDVKV--WEPIFTKDGTFQEVKRVFSLKG 276 (420)
T ss_pred EEEecCCCcEEEEecC-Cce-eeeecc-ccccccceeeCCCCcEEEEecCCCCceE--EEEEeccCcchhhhhhhheecc
Confidence 5799999999999999 543 444542 2223466799999999999998888999 5432 11 23345666
Q ss_pred ccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecC
Q 032092 73 HRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKD 139 (147)
Q Consensus 73 h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~ 139 (147)
|.. .|..+ +|||+.+.++|.+-||+++|||++
T Consensus 277 H~s-----aV~~~------------------------------aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 277 HQS-----AVLAA------------------------------AFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred chh-----heeee------------------------------eeCCCcceeEEEecCCcEEEeecc
Confidence 664 34454 999999999999999999999985
No 133
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.31 E-value=1.2e-11 Score=98.22 Aligned_cols=102 Identities=10% Similarity=0.163 Sum_probs=81.6
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccC-CCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPD-QQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSET 79 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spd-g~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~ 79 (147)
|.+++++|.|.|||++.+. |.......|..|.+.|+|+|. ...|++-+.|.+|.+ +|.+..+....+....
T Consensus 180 L~~asd~G~VtlwDv~g~s-p~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~--yD~~s~~s~~~l~y~~----- 251 (673)
T KOG4378|consen 180 LSIASDKGAVTLWDVQGMS-PIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINI--YDIRSQASTDRLTYSH----- 251 (673)
T ss_pred eEeeccCCeEEEEeccCCC-cccchhhhccCCcCcceecCCccceEEEecccceEEE--eecccccccceeeecC-----
Confidence 5688999999999999874 444455567778899999996 557888899999999 8887666555544211
Q ss_pred EeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCc
Q 032092 80 CSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSK 141 (147)
Q Consensus 80 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~ 141 (147)
|..++ +|+|+|.+|+.|.+.|.|..||++..
T Consensus 252 -Plstv------------------------------af~~~G~~L~aG~s~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 252 -PLSTV------------------------------AFSECGTYLCAGNSKGELIAYDMRST 282 (673)
T ss_pred -Cccee------------------------------eecCCceEEEeecCCceEEEEecccC
Confidence 34455 99999999999999999999999864
No 134
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.29 E-value=3.7e-11 Score=99.81 Aligned_cols=106 Identities=20% Similarity=0.324 Sum_probs=89.3
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC 80 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~ 80 (147)
++.|+.+|.++|||+++++ .+.++.. ....|+++.-+|-=+.+|+|..+|+|.| ++++.++.+.+|+....
T Consensus 175 IvvGs~~G~lql~Nvrt~K-~v~~f~~-~~s~IT~ieqsPaLDVVaiG~~~G~Vii--fNlK~dkil~sFk~d~g----- 245 (910)
T KOG1539|consen 175 IVVGSSQGRLQLWNVRTGK-VVYTFQE-FFSRITAIEQSPALDVVAIGLENGTVII--FNLKFDKILMSFKQDWG----- 245 (910)
T ss_pred EEEeecCCcEEEEEeccCc-EEEEecc-cccceeEeccCCcceEEEEeccCceEEE--EEcccCcEEEEEEcccc-----
Confidence 4789999999999999986 4566543 3357999999999999999999999999 88888899999984322
Q ss_pred eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCC-CeEEEeCCCCcEEEeecCCceeee
Q 032092 81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIH-HTFATAGSDGAFNFWDKDSKQRLK 145 (147)
Q Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg-~~latg~~Dg~i~iWd~~~~~~~~ 145 (147)
.|.++ +|..|| ..+|+|+..|.+.+||++.++++.
T Consensus 246 ~Vtsl------------------------------SFrtDG~p~las~~~~G~m~~wDLe~kkl~~ 281 (910)
T KOG1539|consen 246 RVTSL------------------------------SFRTDGNPLLASGRSNGDMAFWDLEKKKLIN 281 (910)
T ss_pred ceeEE------------------------------EeccCCCeeEEeccCCceEEEEEcCCCeeee
Confidence 46676 999999 678999999999999999988764
No 135
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.29 E-value=4.6e-11 Score=90.71 Aligned_cols=139 Identities=11% Similarity=0.171 Sum_probs=104.3
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC 80 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~ 80 (147)
+++|+.|.+-.+||+.+++ +++.+ .+|....+-++-+|..+.+++++.|-+.++|||.. .-..+..|+||.......
T Consensus 287 ~vTaSWDRTAnlwDVEtge-~v~~L-tGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRe-aI~sV~VFQGHtdtVTS~ 363 (481)
T KOG0300|consen 287 MVTASWDRTANLWDVETGE-VVNIL-TGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE-AIQSVAVFQGHTDTVTSV 363 (481)
T ss_pred eeeeeccccceeeeeccCc-eeccc-cCcchhccccccCCcceEEEEeccCceeEeccchh-hcceeeeecccccceeEE
Confidence 5789999999999999996 45544 45666788888999999999999999999966642 245667899998864333
Q ss_pred eeccceeeeecCCCcceeee---eeeeeeeee---eceEEEEEecCCCeEEEeCCCCcEEEeecCCce
Q 032092 81 SVISFTSILAGDAPKYSSFY---KVKRLHLFV---KSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQ 142 (147)
Q Consensus 81 ~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~---~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~ 142 (147)
..+..+.+.+|+||.....| ++......+ ...++++.+.-++.+|---.+..|+++|+...+
T Consensus 364 vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R 431 (481)
T KOG0300|consen 364 VFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR 431 (481)
T ss_pred EEecCCceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCc
Confidence 33444678888888544434 444444444 556788999888899998888899999986544
No 136
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.29 E-value=9.7e-12 Score=97.42 Aligned_cols=108 Identities=17% Similarity=0.221 Sum_probs=85.1
Q ss_pred eEeecCCeEEEEECCCCccceeEecC----------------CCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCc
Q 032092 2 VVGTADRNLVVFNLQNPQTEFKRINS----------------PLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQS 65 (147)
Q Consensus 2 ~~gs~dg~v~iwdi~~~~~~~~~~~~----------------~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~ 65 (147)
.+++.||+|.=|++-+++.....+.. .|...+.++|+||||++||+|+.|..|.| ||.++.+
T Consensus 158 fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~I--w~~~t~e 235 (479)
T KOG0299|consen 158 FSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQI--WDCDTLE 235 (479)
T ss_pred eecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEE--ecCcccc
Confidence 57888999999999888632111111 23346899999999999999999999999 7777788
Q ss_pred ceeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeee
Q 032092 66 KNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLK 145 (147)
Q Consensus 66 ~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~ 145 (147)
.++.|++|+. .|.++ +|--.-..|.+++.|++|++|+++....+.
T Consensus 236 hv~~~~ghr~-----~V~~L------------------------------~fr~gt~~lys~s~Drsvkvw~~~~~s~ve 280 (479)
T KOG0299|consen 236 HVKVFKGHRG-----AVSSL------------------------------AFRKGTSELYSASADRSVKVWSIDQLSYVE 280 (479)
T ss_pred hhhccccccc-----ceeee------------------------------eeecCccceeeeecCCceEEEehhHhHHHH
Confidence 8889999997 36666 887766789999999999999998765543
Q ss_pred c
Q 032092 146 V 146 (147)
Q Consensus 146 ~ 146 (147)
+
T Consensus 281 t 281 (479)
T KOG0299|consen 281 T 281 (479)
T ss_pred H
Confidence 3
No 137
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.28 E-value=3.4e-11 Score=87.85 Aligned_cols=101 Identities=16% Similarity=0.185 Sum_probs=83.0
Q ss_pred CeEeecCCeEEEEECCCCccceeEecC-----CC-CcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEecc
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINS-----PL-KYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHR 74 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~-----~~-~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~ 74 (147)
+++|+.|.+|+.||+|-... +.++.. .. ...|.++++.|.|+.|++|-.|....+ +|++-+++++.|..|.
T Consensus 197 ~~sgsqdktirfwdlrv~~~-v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~l--ydirg~r~iq~f~phs 273 (350)
T KOG0641|consen 197 FASGSQDKTIRFWDLRVNSC-VNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCML--YDIRGGRMIQRFHPHS 273 (350)
T ss_pred EEccCCCceEEEEeeeccce-eeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEE--EEeeCCceeeeeCCCc
Confidence 47899999999999997643 333321 11 135889999999999999999999999 8999899999997776
Q ss_pred CCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecC
Q 032092 75 DGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKD 139 (147)
Q Consensus 75 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~ 139 (147)
.. +.++ -|+|.-.++.||+.|.+|++=|++
T Consensus 274 ad-----ir~v------------------------------rfsp~a~yllt~syd~~ikltdlq 303 (350)
T KOG0641|consen 274 AD-----IRCV------------------------------RFSPGAHYLLTCSYDMKIKLTDLQ 303 (350)
T ss_pred cc-----eeEE------------------------------EeCCCceEEEEecccceEEEeecc
Confidence 53 5555 999999999999999999999985
No 138
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.28 E-value=6.7e-13 Score=102.83 Aligned_cols=143 Identities=13% Similarity=0.189 Sum_probs=95.9
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC 80 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~ 80 (147)
|++|+.|..|++|++...+........+...+|+++.|.++++.+++.+.|+.+++ |+..+.+...+|.+|+.+..+.
T Consensus 190 latgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~--Wnvd~~r~~~TLsGHtdkVt~a 267 (459)
T KOG0288|consen 190 LATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRL--WNVDSLRLRHTLSGHTDKVTAA 267 (459)
T ss_pred hhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceee--eeccchhhhhhhcccccceeee
Confidence 67899999999999987653222222223357999999999999999999999999 6666778888999998863211
Q ss_pred --eeccceeeeecCCCcceeeeeeee--eee-eeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092 81 --SVISFTSILAGDAPKYSSFYKVKR--LHL-FVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146 (147)
Q Consensus 81 --~v~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~ 146 (147)
.... ..+.+|+.+.....|++.+ ... .+++-.-....-....+++|-.|++|++||.++..+.++
T Consensus 268 k~~~~~-~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~s 337 (459)
T KOG0288|consen 268 KFKLSH-SRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRS 337 (459)
T ss_pred hhhccc-cceeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccccceEEEeccCCceeeE
Confidence 1111 1256677774433333322 111 111111123344457789999999999999999887654
No 139
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.28 E-value=2.3e-11 Score=89.91 Aligned_cols=103 Identities=15% Similarity=0.146 Sum_probs=77.6
Q ss_pred ecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeecc
Q 032092 5 TADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVIS 84 (147)
Q Consensus 5 s~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~ 84 (147)
+..|+|.|-....-+ |+..+. +|...-.||+|+|+|++||+|+.|-.+.| ||+.+---...+.- +.+||..
T Consensus 166 ~GlG~v~ILsypsLk-pv~si~-AH~snCicI~f~p~GryfA~GsADAlvSL--WD~~ELiC~R~isR-----ldwpVRT 236 (313)
T KOG1407|consen 166 NGLGCVEILSYPSLK-PVQSIK-AHPSNCICIEFDPDGRYFATGSADALVSL--WDVDELICERCISR-----LDWPVRT 236 (313)
T ss_pred cCCceEEEEeccccc-cccccc-cCCcceEEEEECCCCceEeeccccceeec--cChhHhhhheeecc-----ccCceEE
Confidence 445788887777653 555554 34334567889999999999999999999 77653222233322 2367777
Q ss_pred ceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092 85 FTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146 (147)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~ 146 (147)
+ +||.||++||+|+.|-.|-|=++++|..+++
T Consensus 237 l------------------------------SFS~dg~~lASaSEDh~IDIA~vetGd~~~e 268 (313)
T KOG1407|consen 237 L------------------------------SFSHDGRMLASASEDHFIDIAEVETGDRVWE 268 (313)
T ss_pred E------------------------------EeccCcceeeccCccceEEeEecccCCeEEE
Confidence 7 9999999999999999999999999988764
No 140
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.27 E-value=1.6e-11 Score=97.57 Aligned_cols=136 Identities=18% Similarity=0.242 Sum_probs=93.2
Q ss_pred eEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCC----c
Q 032092 2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDG----S 77 (147)
Q Consensus 2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~----~ 77 (147)
.+|+.||.|.|||++++. .+..+. +|...+.||.+++||..|.+|+.|++++. ||.++++.+.. |.-. .
T Consensus 525 FsccsdGnI~vwDLhnq~-~Vrqfq-GhtDGascIdis~dGtklWTGGlDntvRc--WDlregrqlqq---hdF~SQIfS 597 (705)
T KOG0639|consen 525 FSCCSDGNIAVWDLHNQT-LVRQFQ-GHTDGASCIDISKDGTKLWTGGLDNTVRC--WDLREGRQLQQ---HDFSSQIFS 597 (705)
T ss_pred eeeccCCcEEEEEcccce-eeeccc-CCCCCceeEEecCCCceeecCCCccceee--hhhhhhhhhhh---hhhhhhhee
Confidence 468899999999999974 455554 34456899999999999999999999999 88888765432 2211 1
Q ss_pred eEEeeccceeeeecCCC-cceeeeeeee----eeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeee
Q 032092 78 ETCSVISFTSILAGDAP-KYSSFYKVKR----LHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLK 145 (147)
Q Consensus 78 ~~~~v~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~ 145 (147)
..+..+.. -++.|.+. .+++..--+. ++++-.=.+++.|.+-|++|++-|.|..+..|-+--|..++
T Consensus 598 Lg~cP~~d-WlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiF 669 (705)
T KOG0639|consen 598 LGYCPTGD-WLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF 669 (705)
T ss_pred cccCCCcc-ceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCcccccee
Confidence 11122332 24455555 4444442221 12222334678999999999999999999999875554443
No 141
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.27 E-value=2e-11 Score=93.91 Aligned_cols=103 Identities=16% Similarity=0.249 Sum_probs=75.1
Q ss_pred CeEeecCCeEEEEECCCCcccee--EecCCCCcceEEEEEccC-CCEEEEEeeCCeEEEEeecCCCCcce--eEEEeccC
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFK--RINSPLKYQMRCVAAFPD-QQGFWVGSIEGRVGVHHLDDSQQSKN--FTFKCHRD 75 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~--~~~~~~~~~i~~la~spd-g~~l~~g~~dg~i~i~~~d~~~~~~~--~~~~~h~~ 75 (147)
|++|.--+.|++|-..++.=.+. .+. .|...|-.|+|||. ...|++||.||+|+| ||+|.+... ...+.|..
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~-gH~~SVEDLqWSptE~~vfaScS~DgsIrI--WDiRs~~~~~~~~~kAh~s 303 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKVDQRPFT-GHTKSVEDLQWSPTEDGVFASCSCDGSIRI--WDIRSGPKKAAVSTKAHNS 303 (440)
T ss_pred cccCccccceEeeeeccCceeecCcccc-ccccchhhhccCCccCceEEeeecCceEEE--EEecCCCccceeEeeccCC
Confidence 35555667899999888641111 111 35567999999997 458999999999999 788876332 22245543
Q ss_pred CceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCc
Q 032092 76 GSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSK 141 (147)
Q Consensus 76 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~ 141 (147)
.||-+ +|+..-.+||+|+.||+++|||++..
T Consensus 304 -----DVNVI------------------------------SWnr~~~lLasG~DdGt~~iwDLR~~ 334 (440)
T KOG0302|consen 304 -----DVNVI------------------------------SWNRREPLLASGGDDGTLSIWDLRQF 334 (440)
T ss_pred -----ceeeE------------------------------EccCCcceeeecCCCceEEEEEhhhc
Confidence 35555 99998889999999999999999764
No 142
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.27 E-value=9.1e-11 Score=89.33 Aligned_cols=136 Identities=13% Similarity=0.150 Sum_probs=83.5
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEcc--CCCEEEEEeeCCeEEEEeecCCCCc--ceeEEEeccCC
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFP--DQQGFWVGSIEGRVGVHHLDDSQQS--KNFTFKCHRDG 76 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~sp--dg~~l~~g~~dg~i~i~~~d~~~~~--~~~~~~~h~~~ 76 (147)
+|++...|.|+|||..+++. ...+.. +...++.+.|.. .+..+.+++.||+|++ ||+|... ....++.|...
T Consensus 43 vav~lSngsv~lyd~~tg~~-l~~fk~-~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~--wD~Rs~~e~a~~~~~~~~~~ 118 (376)
T KOG1188|consen 43 VAVSLSNGSVRLYDKGTGQL-LEEFKG-PPATTNGVRFISCDSPHGVISCSSDGTVRL--WDIRSQAESARISWTQQSGT 118 (376)
T ss_pred EEEEecCCeEEEEeccchhh-hheecC-CCCcccceEEecCCCCCeeEEeccCCeEEE--EEeecchhhhheeccCCCCC
Confidence 57889999999999999764 333332 223466777766 3678999999999999 6666533 33344455422
Q ss_pred c-eEEeeccc-eeeeec-----CCCcc--eeeeeeeeeee-----eeeceEEEEEecCC-CeEEEeCCCCcEEEeecCC
Q 032092 77 S-ETCSVISF-TSILAG-----DAPKY--SSFYKVKRLHL-----FVKSHVIVLFVQIH-HTFATAGSDGAFNFWDKDS 140 (147)
Q Consensus 77 ~-~~~~v~~~-~~~~~~-----~~~~~--~~~~~~~~~~~-----~~~~~~~~~fspdg-~~latg~~Dg~i~iWd~~~ 140 (147)
. .++..+.- -++..| +++.+ +.++.-.+... |....+.+.|||.. ++|+|||.||-|.|+|++.
T Consensus 119 ~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~ 197 (376)
T KOG1188|consen 119 PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKK 197 (376)
T ss_pred cceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCC
Confidence 1 12222211 112222 22221 22222223222 23333689999976 8999999999999999864
No 143
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.26 E-value=1.6e-11 Score=92.00 Aligned_cols=100 Identities=21% Similarity=0.219 Sum_probs=79.4
Q ss_pred EeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCC-EEEEEeeCCeEEEEeecCCC-CcceeEEEeccCCceEE
Q 032092 3 VGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQ-GFWVGSIEGRVGVHHLDDSQ-QSKNFTFKCHRDGSETC 80 (147)
Q Consensus 3 ~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~-~l~~g~~dg~i~i~~~d~~~-~~~~~~~~~h~~~~~~~ 80 (147)
....|++++-||+|++++ ...++.+|...|++|.|+|+.+ .|++|+.||.|+| ||.|. ..+++++.+|..-
T Consensus 188 ~tt~d~tl~~~D~RT~~~-~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvri--WD~R~tk~pv~el~~HsHW---- 260 (370)
T KOG1007|consen 188 ATTSDSTLQFWDLRTMKK-NNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRI--WDTRKTKFPVQELPGHSHW---- 260 (370)
T ss_pred EEeCCCcEEEEEccchhh-hcchhhhhcceeeeccCCCCceEEEEEcCCCccEEE--EeccCCCccccccCCCceE----
Confidence 346789999999999865 3456666766799999999966 5789999999999 88875 3456677777642
Q ss_pred eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCC-CeEEEeCCCCcEEEeecCC
Q 032092 81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIH-HTFATAGSDGAFNFWDKDS 140 (147)
Q Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg-~~latg~~Dg~i~iWd~~~ 140 (147)
+.++ -|+|.. ++++|||+|..|.+|.+.+
T Consensus 261 -vW~V------------------------------Rfn~~hdqLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 261 -VWAV------------------------------RFNPEHDQLILSGGSDSAVNLSCASS 290 (370)
T ss_pred -EEEE------------------------------EecCccceEEEecCCCceeEEEeccc
Confidence 4444 899976 8999999999999999754
No 144
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.24 E-value=5.8e-11 Score=96.53 Aligned_cols=101 Identities=18% Similarity=0.245 Sum_probs=85.2
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC 80 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~ 80 (147)
+++|+..+.+++||-++.++. ..+. +|...|++|-.++||++++++++||+|++ ||+..++-+.++..|+..
T Consensus 186 ivsGgtek~lr~wDprt~~ki-mkLr-GHTdNVr~ll~~dDGt~~ls~sSDgtIrl--WdLgqQrCl~T~~vH~e~---- 257 (735)
T KOG0308|consen 186 IVSGGTEKDLRLWDPRTCKKI-MKLR-GHTDNVRVLLVNDDGTRLLSASSDGTIRL--WDLGQQRCLATYIVHKEG---- 257 (735)
T ss_pred EEecCcccceEEeccccccce-eeee-ccccceEEEEEcCCCCeEeecCCCceEEe--eeccccceeeeEEeccCc----
Confidence 477889999999999998764 3344 56677999999999999999999999999 888888899999989863
Q ss_pred eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCC
Q 032092 81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDS 140 (147)
Q Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~ 140 (147)
+.++ .-+|+-..+.+|+.||.|..=|+.+
T Consensus 258 -VWaL------------------------------~~~~sf~~vYsG~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 258 -VWAL------------------------------QSSPSFTHVYSGGRDGNIYRTDLRN 286 (735)
T ss_pred -eEEE------------------------------eeCCCcceEEecCCCCcEEecccCC
Confidence 4454 6677778999999999998888776
No 145
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.24 E-value=8.2e-12 Score=95.73 Aligned_cols=103 Identities=17% Similarity=0.267 Sum_probs=78.4
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC 80 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~ 80 (147)
+++|++|-.++.||++..+.|++... .|...|.++.|||.|+-|++||-|.+|+| +..+.++.--.+ |+... .
T Consensus 244 F~~a~ED~nlY~~DmR~l~~p~~v~~-dhvsAV~dVdfsptG~EfvsgsyDksIRI--f~~~~~~SRdiY--htkRM--q 316 (433)
T KOG0268|consen 244 FVAANEDHNLYTYDMRNLSRPLNVHK-DHVSAVMDVDFSPTGQEFVSGSYDKSIRI--FPVNHGHSRDIY--HTKRM--Q 316 (433)
T ss_pred eeeccccccceehhhhhhcccchhhc-ccceeEEEeccCCCcchhccccccceEEE--eecCCCcchhhh--hHhhh--h
Confidence 36889999999999999877765443 34457999999999999999999999999 766654432222 22110 0
Q ss_pred eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCC
Q 032092 81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDS 140 (147)
Q Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~ 140 (147)
.|.+ +.||.|.+++.+||.|+.|++|...-
T Consensus 317 ~V~~------------------------------Vk~S~Dskyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 317 HVFC------------------------------VKYSMDSKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred eeeE------------------------------EEEeccccEEEecCCCcceeeeecch
Confidence 1223 39999999999999999999998753
No 146
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.21 E-value=1e-10 Score=93.01 Aligned_cols=140 Identities=14% Similarity=0.128 Sum_probs=99.3
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCc---
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGS--- 77 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~--- 77 (147)
+++|+..+.|+|||++. +.+++....|+..|+++.++....+||+++..|.|.| ..+.++....+|+...+..
T Consensus 94 ~~sgG~~~~Vkiwdl~~--kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiii--h~~~t~~~tt~f~~~sgqsvRl 169 (673)
T KOG4378|consen 94 EISGGQSGCVKIWDLRA--KLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIII--HGTKTKQKTTTFTIDSGQSVRL 169 (673)
T ss_pred eeccCcCceeeehhhHH--HHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEE--EecccCccccceecCCCCeEEE
Confidence 46788999999999995 3455554456678999999999999999999999999 6777666666665322221
Q ss_pred eEEeeccceeeeecCCCcceeeeeeeee--eee-eeceE----EEEEecCC-CeEEEeCCCCcEEEeecCCceee
Q 032092 78 ETCSVISFTSILAGDAPKYSSFYKVKRL--HLF-VKSHV----IVLFVQIH-HTFATAGSDGAFNFWDKDSKQRL 144 (147)
Q Consensus 78 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~----~~~fspdg-~~latg~~Dg~i~iWd~~~~~~~ 144 (147)
..|....--++..-+|+++..+|+.... ..+ ..+|. .++|+|.+ .+|++-|.|++|.+||...++..
T Consensus 170 l~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~ 244 (673)
T KOG4378|consen 170 LRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAST 244 (673)
T ss_pred eecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccc
Confidence 1233333334555566666666655432 222 25564 48999977 88999999999999999876543
No 147
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.18 E-value=3.6e-10 Score=95.79 Aligned_cols=139 Identities=9% Similarity=0.078 Sum_probs=94.7
Q ss_pred CeEeecCCeEEEEECCC------C-----cc------ceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCC
Q 032092 1 MVVGTADRNLVVFNLQN------P-----QT------EFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQ 63 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~------~-----~~------~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~ 63 (147)
||+|++|+.|.||+-.. + .+ .+..+ ..|...|..++|+|++.+||+++.|++|.| ||.++
T Consensus 84 lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l-~~H~~DV~Dv~Wsp~~~~lvS~s~DnsVii--wn~~t 160 (942)
T KOG0973|consen 84 LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSIL-RGHDSDVLDVNWSPDDSLLVSVSLDNSVII--WNAKT 160 (942)
T ss_pred EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEE-ecCCCccceeccCCCccEEEEecccceEEE--Ecccc
Confidence 68999999999999883 1 11 11222 246667999999999999999999999999 88888
Q ss_pred CcceeEEEeccCC--ceEEeeccceeeeecCCCcceeeee----ee-eeeeee------eceEEEEEecCCCeEEEeCC-
Q 032092 64 QSKNFTFKCHRDG--SETCSVISFTSILAGDAPKYSSFYK----VK-RLHLFV------KSHVIVLFVQIHHTFATAGS- 129 (147)
Q Consensus 64 ~~~~~~~~~h~~~--~~~~~v~~~~~~~~~~~~~~~~~~~----~~-~~~~~~------~~~~~~~fspdg~~latg~~- 129 (147)
.+.+.++.+|..- +..+.+...++-+-++|-.+.+|+- ++ ++...+ .-+.+++|||||++||+..+
T Consensus 161 F~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~ 240 (942)
T KOG0973|consen 161 FELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAV 240 (942)
T ss_pred ceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhc
Confidence 8888999999764 3334333332233355556666552 22 222222 12357999999999999855
Q ss_pred C---CcEEEeecCCce
Q 032092 130 D---GAFNFWDKDSKQ 142 (147)
Q Consensus 130 D---g~i~iWd~~~~~ 142 (147)
+ .++.|-+-++-+
T Consensus 241 n~~~~~~~IieR~tWk 256 (942)
T KOG0973|consen 241 NGGKSTIAIIERGTWK 256 (942)
T ss_pred cCCcceeEEEecCCce
Confidence 2 256676654433
No 148
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.18 E-value=2e-09 Score=78.64 Aligned_cols=145 Identities=11% Similarity=0.109 Sum_probs=98.1
Q ss_pred CeEeecCCeEEEEECCCC--ccceeEec-CCCCcceEEEEEccC----CCEEEEEe-eCCeEEEEeecCCCCcceeEEEe
Q 032092 1 MVVGTADRNLVVFNLQNP--QTEFKRIN-SPLKYQMRCVAAFPD----QQGFWVGS-IEGRVGVHHLDDSQQSKNFTFKC 72 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~--~~~~~~~~-~~~~~~i~~la~spd----g~~l~~g~-~dg~i~i~~~d~~~~~~~~~~~~ 72 (147)
||+|+.|++|++.-.+.. +..-+.++ ..|...|+.++|-.+ |..|++++ .|..|++ -|-.+|+....+.+
T Consensus 104 iatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~--tdc~~g~~~~a~sg 181 (350)
T KOG0641|consen 104 IATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYI--TDCGRGQGFHALSG 181 (350)
T ss_pred EEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEE--eecCCCCcceeecC
Confidence 689999999998655433 21111111 135567999999654 34555443 3445554 77778888888888
Q ss_pred ccCCceEEeeccceeeeecCCCcceeeeeee--eeeeee-----------eceEEEEEecCCCeEEEeCCCCcEEEeecC
Q 032092 73 HRDGSETCSVISFTSILAGDAPKYSSFYKVK--RLHLFV-----------KSHVIVLFVQIHHTFATAGSDGAFNFWDKD 139 (147)
Q Consensus 73 h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----------~~~~~~~fspdg~~latg~~Dg~i~iWd~~ 139 (147)
|+.-....-..+-.++++|+.+....||+|. ..+..+ .+..+++.-|.|++|++|-.|...-+||++
T Consensus 182 htghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydir 261 (350)
T KOG0641|consen 182 HTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIR 261 (350)
T ss_pred CcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEee
Confidence 8754333223344688999999776677653 112221 223468999999999999999999999999
Q ss_pred CceeeecC
Q 032092 140 SKQRLKVF 147 (147)
Q Consensus 140 ~~~~~~~~ 147 (147)
.++.++.|
T Consensus 262 g~r~iq~f 269 (350)
T KOG0641|consen 262 GGRMIQRF 269 (350)
T ss_pred CCceeeee
Confidence 99988765
No 149
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.18 E-value=6.2e-10 Score=87.63 Aligned_cols=144 Identities=14% Similarity=0.154 Sum_probs=93.5
Q ss_pred CeEeecCCeEEEEECCCCccc-eeEecCCCCcceEEEEEccCCC-EEEEEeeCCeEEEEeecCCCCcc--eeEEEeccCC
Q 032092 1 MVVGTADRNLVVFNLQNPQTE-FKRINSPLKYQMRCVAAFPDQQ-GFWVGSIEGRVGVHHLDDSQQSK--NFTFKCHRDG 76 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~-~~~~~~~~~~~i~~la~spdg~-~l~~g~~dg~i~i~~~d~~~~~~--~~~~~~h~~~ 76 (147)
|++|+-||+++||-+.....+ ++.+. -.++||.+.+|.|+|. .+++++--...+. ||..+.+. +....++...
T Consensus 228 llvaG~d~~lrifqvDGk~N~~lqS~~-l~~fPi~~a~f~p~G~~~i~~s~rrky~ys--yDle~ak~~k~~~~~g~e~~ 304 (514)
T KOG2055|consen 228 LLVAGLDGTLRIFQVDGKVNPKLQSIH-LEKFPIQKAEFAPNGHSVIFTSGRRKYLYS--YDLETAKVTKLKPPYGVEEK 304 (514)
T ss_pred EEEecCCCcEEEEEecCccChhheeee-eccCccceeeecCCCceEEEecccceEEEE--eeccccccccccCCCCcccc
Confidence 578999999999999765333 12221 2357999999999999 7888887777777 66554332 2223333321
Q ss_pred c-eEEeeccc--eeeeecCCCcceeeeeeeee---eeeeeceE-EEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092 77 S-ETCSVISF--TSILAGDAPKYSSFYKVKRL---HLFVKSHV-IVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF 147 (147)
Q Consensus 77 ~-~~~~v~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~ 147 (147)
. +.+.|... .+.+.|.+..+.++.-.... ...++|.+ .+.|+.|++.|..++++|.|.+||++..++++.|
T Consensus 305 ~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf 382 (514)
T KOG2055|consen 305 SMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRF 382 (514)
T ss_pred hhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEE
Confidence 1 22323222 23344555544444322111 22345654 4799999999999999999999999999999876
No 150
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.16 E-value=3.5e-10 Score=91.87 Aligned_cols=139 Identities=11% Similarity=0.092 Sum_probs=88.7
Q ss_pred CeEeec-CCeEEEEECCCCccceeE-------ecCCC--CcceEEEEEccCCCEEEEEeeCCeEEEEeecCCC--Cccee
Q 032092 1 MVVGTA-DRNLVVFNLQNPQTEFKR-------INSPL--KYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQ--QSKNF 68 (147)
Q Consensus 1 l~~gs~-dg~v~iwdi~~~~~~~~~-------~~~~~--~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~--~~~~~ 68 (147)
||+++. |+.|++|||++....... +..+. ...+.++....-|.+|.+.+.|++|++ |+.++ ..+..
T Consensus 232 laSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~--ynm~s~s~sP~~ 309 (720)
T KOG0321|consen 232 LASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYF--YNMRSLSISPVA 309 (720)
T ss_pred eeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEE--EeccccCcCchh
Confidence 577777 999999999987542211 10010 123556666666898888888999999 56553 34455
Q ss_pred EEEeccCCc----eEEeeccceeeeecCCC--cceeeeeeeeeeeeeece----EEEEEecCC-CeEEEeCCCCcEEEee
Q 032092 69 TFKCHRDGS----ETCSVISFTSILAGDAP--KYSSFYKVKRLHLFVKSH----VIVLFVQIH-HTFATAGSDGAFNFWD 137 (147)
Q Consensus 69 ~~~~h~~~~----~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~fspdg-~~latg~~Dg~i~iWd 137 (147)
.|.+|.+.. ......+..+++++++. .+|.....+..+..+.|| +.+.|.|.. .-+||++.|-.++||+
T Consensus 310 ~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~ 389 (720)
T KOG0321|consen 310 EFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWR 389 (720)
T ss_pred hccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEe
Confidence 555554431 23344555555555555 345555555555566676 358999865 5678889999999999
Q ss_pred cCCc
Q 032092 138 KDSK 141 (147)
Q Consensus 138 ~~~~ 141 (147)
+..+
T Consensus 390 l~~~ 393 (720)
T KOG0321|consen 390 LSNG 393 (720)
T ss_pred ccCc
Confidence 8543
No 151
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.16 E-value=3.7e-10 Score=92.05 Aligned_cols=113 Identities=23% Similarity=0.302 Sum_probs=77.1
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEec--cCC-c
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCH--RDG-S 77 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h--~~~-~ 77 (147)
|++|++||.+..+++..++...++.....+..|.+|+|+|++..++.|+.||.|++ ||...+...+..... +.. .
T Consensus 125 l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iri--wd~~~~~t~~~~~~~~d~l~k~ 202 (691)
T KOG2048|consen 125 LAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRI--WDVKSGQTLHIITMQLDRLSKR 202 (691)
T ss_pred EEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEE--EEcCCCceEEEeeecccccccC
Confidence 57899999888888877654333332233456999999999999999999999999 787766554421110 000 0
Q ss_pred eEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092 78 ETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146 (147)
Q Consensus 78 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~ 146 (147)
...-+.++ .|-.| ..||+|.+-|+|.+||.+.+.++..
T Consensus 203 ~~~iVWSv------------------------------~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS 240 (691)
T KOG2048|consen 203 EPTIVWSV------------------------------LFLRD-STIASGDSAGTVTFWDSIFGTLIQS 240 (691)
T ss_pred CceEEEEE------------------------------EEeec-CcEEEecCCceEEEEcccCcchhhh
Confidence 11112222 44445 4689999999999999998877654
No 152
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.15 E-value=4.1e-11 Score=88.76 Aligned_cols=99 Identities=20% Similarity=0.282 Sum_probs=76.2
Q ss_pred eEeecCCeEEEEECCCC--cccee-EecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCce
Q 032092 2 VVGTADRNLVVFNLQNP--QTEFK-RINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE 78 (147)
Q Consensus 2 ~~gs~dg~v~iwdi~~~--~~~~~-~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~ 78 (147)
++|+.+.++..|+++.. ..++. .+.. ..-.+.-+.+-||++.+|++++||+|+++.| ++.+++..++-|+.
T Consensus 221 isgga~dkl~~~Sl~~s~gslq~~~e~~l-knpGv~gvrIRpD~KIlATAGWD~RiRVysw--rtl~pLAVLkyHsa--- 294 (323)
T KOG0322|consen 221 ISGGADDKLVMYSLNHSTGSLQIRKEITL-KNPGVSGVRIRPDGKILATAGWDHRIRVYSW--RTLNPLAVLKYHSA--- 294 (323)
T ss_pred cCCCccccceeeeeccccCcccccceEEe-cCCCccceEEccCCcEEeecccCCcEEEEEe--ccCCchhhhhhhhc---
Confidence 45677788888988754 21111 1110 1123788899999999999999999999666 56778888888885
Q ss_pred EEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeec
Q 032092 79 TCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDK 138 (147)
Q Consensus 79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~ 138 (147)
.++++ +|+||-+.+|+||.|+.|-+|++
T Consensus 295 --gvn~v------------------------------Afspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 295 --GVNAV------------------------------AFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred --ceeEE------------------------------EeCCCCchhhhccCCceEEeeec
Confidence 47777 99999999999999999999985
No 153
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=1.3e-10 Score=93.96 Aligned_cols=129 Identities=14% Similarity=0.249 Sum_probs=88.9
Q ss_pred ecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEe-ec
Q 032092 5 TADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCS-VI 83 (147)
Q Consensus 5 s~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~-v~ 83 (147)
+....|+|||+..++ +++.+.. ....|.+++++|.|+.|++|+.|+.+-.+|.|.. .++.++++-|......-. --
T Consensus 584 aTq~~vRiYdL~kqe-lvKkL~t-g~kwiS~msihp~GDnli~gs~d~k~~WfDldls-skPyk~lr~H~~avr~Va~H~ 660 (733)
T KOG0650|consen 584 ATQRSVRIYDLSKQE-LVKKLLT-GSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLS-SKPYKTLRLHEKAVRSVAFHK 660 (733)
T ss_pred EeccceEEEehhHHH-HHHHHhc-CCeeeeeeeecCCCCeEEEecCCCeeEEEEcccC-cchhHHhhhhhhhhhhhhhcc
Confidence 455789999999864 4444433 2347999999999999999999999987566654 355556666765321100 12
Q ss_pred cceeeeecCCC-cceeee-----ee-----eeeeeeeece--------EEEEEecCCCeEEEeCCCCcEEEe
Q 032092 84 SFTSILAGDAP-KYSSFY-----KV-----KRLHLFVKSH--------VIVLFVQIHHTFATAGSDGAFNFW 136 (147)
Q Consensus 84 ~~~~~~~~~~~-~~~~~~-----~~-----~~~~~~~~~~--------~~~~fspdg~~latg~~Dg~i~iW 136 (147)
...+++++++| .+.+++ +| .-.+..+.|| +.+.|||...+|.|+|+||+|++|
T Consensus 661 ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 661 RYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 34567777776 455444 22 1113345666 357899999999999999999998
No 154
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.15 E-value=3e-10 Score=83.52 Aligned_cols=105 Identities=12% Similarity=0.239 Sum_probs=76.1
Q ss_pred ecCCeEEEEECCCCcccee-----EecCCC------CcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEec
Q 032092 5 TADRNLVVFNLQNPQTEFK-----RINSPL------KYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCH 73 (147)
Q Consensus 5 s~dg~v~iwdi~~~~~~~~-----~~~~~~------~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h 73 (147)
+.||.|+=|-.++..+... ....|. --.|++|-..|..+.++.++.|+.++- ||+.+|+...+|+||
T Consensus 78 ~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~--~dlE~G~i~r~~rGH 155 (325)
T KOG0649|consen 78 GGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQ--VDLEDGRIQREYRGH 155 (325)
T ss_pred ccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEE--EEecCCEEEEEEcCC
Confidence 4569999998877643111 001111 124899999999888887778999988 888889999999999
Q ss_pred cCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092 74 RDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146 (147)
Q Consensus 74 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~ 146 (147)
++. +.++ +--.....+.||+.||++|+||.++++++++
T Consensus 156 tDY-----vH~v------------------------------v~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ 193 (325)
T KOG0649|consen 156 TDY-----VHSV------------------------------VGRNANGQILSGAEDGTVRVWDTKTQKHVSM 193 (325)
T ss_pred cce-----eeee------------------------------eecccCcceeecCCCccEEEEeccccceeEE
Confidence 974 3332 2212224589999999999999999988764
No 155
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.15 E-value=4.4e-10 Score=84.34 Aligned_cols=138 Identities=10% Similarity=0.084 Sum_probs=85.2
Q ss_pred CeEeecCCeEEEEECCCCcc-ceeEecCCCCcceEEEEEccCC-CEEEEEeeCCeEEEEeecCCCCcc-eeEEEecc-CC
Q 032092 1 MVVGTADRNLVVFNLQNPQT-EFKRINSPLKYQMRCVAAFPDQ-QGFWVGSIEGRVGVHHLDDSQQSK-NFTFKCHR-DG 76 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~-~~~~~~~~~~~~i~~la~spdg-~~l~~g~~dg~i~i~~~d~~~~~~-~~~~~~h~-~~ 76 (147)
|.+.|-|.++.|||+.++.. -+++-..+|..+|..|+|...+ +.||+.+.||.+++ ||+|.-.. ...+.... ..
T Consensus 166 igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRm--FDLR~leHSTIIYE~p~~~~ 243 (364)
T KOG0290|consen 166 IGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRM--FDLRSLEHSTIIYEDPSPST 243 (364)
T ss_pred eEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEE--EEecccccceEEecCCCCCC
Confidence 45778899999999999731 1222223577789999999875 57999999999999 88875322 11222111 00
Q ss_pred c---e---EEeeccceeeeecCCCcc-eeeeeeeeeeeeeece----EEEEEecCC-CeEEEeCCCCcEEEeecCC
Q 032092 77 S---E---TCSVISFTSILAGDAPKY-SSFYKVKRLHLFVKSH----VIVLFVQIH-HTFATAGSDGAFNFWDKDS 140 (147)
Q Consensus 77 ~---~---~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~fspdg-~~latg~~Dg~i~iWd~~~ 140 (147)
. . ...++-+..+...+...+ -..+.......-+.+| +.++|.|.. ..|+|||.|..+-|||+++
T Consensus 244 pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 244 PLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred cceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence 0 0 011222222333332221 1122222223445666 569999965 8999999999999999975
No 156
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.14 E-value=6.3e-10 Score=84.14 Aligned_cols=102 Identities=12% Similarity=0.176 Sum_probs=79.3
Q ss_pred ecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCe-EEEEeecCCCCcceeEEEeccCCceEEeec
Q 032092 5 TADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGR-VGVHHLDDSQQSKNFTFKCHRDGSETCSVI 83 (147)
Q Consensus 5 s~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~-i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~ 83 (147)
-..|.|+|-|+..-+.--..+-.+|+..|.|++.+-+|..+|++|..|+ ||| ||+.+|+.+++++--.... .+.
T Consensus 156 ~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRI--Fdt~~g~~l~E~RRG~d~A---~iy 230 (346)
T KOG2111|consen 156 FKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRI--FDTEDGTLLQELRRGVDRA---DIY 230 (346)
T ss_pred CccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEE--EEcCCCcEeeeeecCCchh---eEE
Confidence 3468999999987543001222367788999999999999999999999 677 9999999998885211111 244
Q ss_pred cceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCc
Q 032092 84 SFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSK 141 (147)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~ 141 (147)
.+ +|||+..+||.+|..|+++|+.++..
T Consensus 231 ~i------------------------------aFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 231 CI------------------------------AFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EE------------------------------EeCCCccEEEEEcCCCeEEEEEeecC
Confidence 45 99999999999999999999998763
No 157
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.11 E-value=8.6e-10 Score=86.71 Aligned_cols=113 Identities=10% Similarity=0.125 Sum_probs=80.9
Q ss_pred CeEeecCCeEEEEECCCCcccee-Ee-cCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCC----CCcceeEEEecc
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFK-RI-NSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDS----QQSKNFTFKCHR 74 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~-~~-~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~----~~~~~~~~~~h~ 74 (147)
||||+.|++.+|||+|+...... .+ .-+|+.+|.+..|||.+-.|++-+.|..|+| ||.. ...+..++. |.
T Consensus 338 laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv--~dss~~sa~~~p~~~I~-Hn 414 (498)
T KOG4328|consen 338 LATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRV--FDSSCISAKDEPLGTIP-HN 414 (498)
T ss_pred eeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEE--eecccccccCCccceee-cc
Confidence 68999999999999998532110 12 2256778999999999888999999999999 7763 223333333 43
Q ss_pred CCc-eEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092 75 DGS-ETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146 (147)
Q Consensus 75 ~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~ 146 (147)
+.. .-...- ..+|.|+-++++.|-.-..|-|+|.+.++.+.+
T Consensus 415 ~~t~RwlT~f------------------------------KA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~e 457 (498)
T KOG4328|consen 415 NRTGRWLTPF------------------------------KAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCE 457 (498)
T ss_pred Ccccccccch------------------------------hheeCCCccEEEEeccCcceeEEcCCCCEEeee
Confidence 321 101111 139999999999999999999999988886654
No 158
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.11 E-value=8.2e-11 Score=92.67 Aligned_cols=107 Identities=18% Similarity=0.237 Sum_probs=90.3
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC 80 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~ 80 (147)
|++++..|-++--|+.+|+. +..+... ...+..|+-+|-.-.+-+|...|+|.+ |.+....++..+.||+.
T Consensus 224 L~~~~~~G~L~Y~DVS~Gkl-Va~~~t~-~G~~~vm~qNP~NaVih~GhsnGtVSl--WSP~skePLvKiLcH~g----- 294 (545)
T KOG1272|consen 224 LVAASEAGFLKYQDVSTGKL-VASIRTG-AGRTDVMKQNPYNAVIHLGHSNGTVSL--WSPNSKEPLVKILCHRG----- 294 (545)
T ss_pred eeecccCCceEEEeechhhh-hHHHHcc-CCccchhhcCCccceEEEcCCCceEEe--cCCCCcchHHHHHhcCC-----
Confidence 67889999999999999964 4444322 246788999998888999999999999 89888888888889986
Q ss_pred eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092 81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146 (147)
Q Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~ 146 (147)
+|.++ ++.|+|+++||.|.|..++|||++....+++
T Consensus 295 ~V~si------------------------------Av~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t 330 (545)
T KOG1272|consen 295 PVSSI------------------------------AVDRGGRYMATTGLDRKVKIWDLRNFYQLHT 330 (545)
T ss_pred CcceE------------------------------EECCCCcEEeecccccceeEeeeccccccce
Confidence 58887 9999999999999999999999998766654
No 159
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=2.2e-09 Score=81.10 Aligned_cols=105 Identities=16% Similarity=0.217 Sum_probs=70.6
Q ss_pred CeEeecCCeEEEEECCCCccceeEecC--CCCcceEEEEEc-cC-CCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCC
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINS--PLKYQMRCVAAF-PD-QQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDG 76 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~--~~~~~i~~la~s-pd-g~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~ 76 (147)
||+|+.|++|+|||.+...-......+ .|...|-.|.|- |. |+.+|+++.|+++.| |.-. ...+.+|...
T Consensus 28 mAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i--WEE~----~~~~~~~~~~ 101 (361)
T KOG2445|consen 28 MATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI--WEEQ----EKSEEAHGRR 101 (361)
T ss_pred eeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee--eeec----ccccccccce
Confidence 689999999999998765433332211 355678888884 44 999999999999999 6432 1112222210
Q ss_pred -ce-------EEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecC--CCeEEEeCCCCcEEEeecCCc
Q 032092 77 -SE-------TCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQI--HHTFATAGSDGAFNFWDKDSK 141 (147)
Q Consensus 77 -~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspd--g~~latg~~Dg~i~iWd~~~~ 141 (147)
.. ...+.+ +.|.|. |-.||+++.||.+|||++-+-
T Consensus 102 Wv~~ttl~DsrssV~D------------------------------V~FaP~hlGLklA~~~aDG~lRIYEA~dp 146 (361)
T KOG2445|consen 102 WVRRTTLVDSRSSVTD------------------------------VKFAPKHLGLKLAAASADGILRIYEAPDP 146 (361)
T ss_pred eEEEEEeecCCcceeE------------------------------EEecchhcceEEEEeccCcEEEEEecCCc
Confidence 00 012223 499996 578999999999999997553
No 160
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.08 E-value=1.1e-09 Score=82.50 Aligned_cols=135 Identities=11% Similarity=0.111 Sum_probs=83.4
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCce--
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE-- 78 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~-- 78 (147)
|++++.||.+++||+...+.. ..+ .++.|+.+.+|.+ ...+++|+.||.|+. +|+.++.. ..+..|.....
T Consensus 28 LLvssWDgslrlYdv~~~~l~-~~~--~~~~plL~c~F~d-~~~~~~G~~dg~vr~--~Dln~~~~-~~igth~~~i~ci 100 (323)
T KOG1036|consen 28 LLVSSWDGSLRLYDVPANSLK-LKF--KHGAPLLDCAFAD-ESTIVTGGLDGQVRR--YDLNTGNE-DQIGTHDEGIRCI 100 (323)
T ss_pred EEEEeccCcEEEEeccchhhh-hhe--ecCCceeeeeccC-CceEEEeccCceEEE--EEecCCcc-eeeccCCCceEEE
Confidence 578899999999999987432 222 2456899999987 557889999999999 55544433 22334544321
Q ss_pred EEeeccceeeeecC-CCcceeeeeee-eeeeeeeceEE-EEEecCCCeEEEeCCCCcEEEeecCCcee
Q 032092 79 TCSVISFTSILAGD-APKYSSFYKVK-RLHLFVKSHVI-VLFVQIHHTFATAGSDGAFNFWDKDSKQR 143 (147)
Q Consensus 79 ~~~v~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~-~~fspdg~~latg~~Dg~i~iWd~~~~~~ 143 (147)
++. .....+++|+ |..++.+..-. .....+..-.. -+.+-.|+.|+.|..|..+.+||+++.+.
T Consensus 101 ~~~-~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~ 167 (323)
T KOG1036|consen 101 EYS-YEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDE 167 (323)
T ss_pred Eee-ccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccccc
Confidence 222 1223444444 44555544321 12222211112 24455678899999999999999987543
No 161
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.07 E-value=8.6e-10 Score=85.57 Aligned_cols=70 Identities=10% Similarity=0.124 Sum_probs=59.9
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccC
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRD 75 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~ 75 (147)
|++++.|++|.|||+.+++..+. +. |...|.++.|+.||.+|++.+.|..|+| ||+++++.+..-.+|..
T Consensus 147 Llsag~Dn~v~iWnv~tgeali~-l~--hpd~i~S~sfn~dGs~l~TtckDKkvRv--~dpr~~~~v~e~~~heG 216 (472)
T KOG0303|consen 147 LLSAGSDNTVSIWNVGTGEALIT-LD--HPDMVYSMSFNRDGSLLCTTCKDKKVRV--IDPRRGTVVSEGVAHEG 216 (472)
T ss_pred HhhccCCceEEEEeccCCceeee-cC--CCCeEEEEEeccCCceeeeecccceeEE--EcCCCCcEeeecccccC
Confidence 57889999999999999976433 33 5567999999999999999999999999 99999988877767764
No 162
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.07 E-value=5.3e-10 Score=91.51 Aligned_cols=112 Identities=13% Similarity=0.086 Sum_probs=85.6
Q ss_pred CCCcceEEEEEccCCCEEEEEeeCCe-----EEEEeecCCCCcceeEEEeccCCc--eEEeeccceeeeecCCCcceeee
Q 032092 28 PLKYQMRCVAAFPDQQGFWVGSIEGR-----VGVHHLDDSQQSKNFTFKCHRDGS--ETCSVISFTSILAGDAPKYSSFY 100 (147)
Q Consensus 28 ~~~~~i~~la~spdg~~l~~g~~dg~-----i~i~~~d~~~~~~~~~~~~h~~~~--~~~~v~~~~~~~~~~~~~~~~~~ 100 (147)
+|.+.|.+++.+|+|+.+|+++.... |+| |++.+-...+.+.+|.... ..++.+.-.++++|+|-.+.++.
T Consensus 523 GHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~l--w~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~ 600 (764)
T KOG1063|consen 523 GHGYEVYALAISPTGNLIASACKSSLKEHAVIRL--WNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYE 600 (764)
T ss_pred cCceeEEEEEecCCCCEEeehhhhCCccceEEEE--EeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeee
Confidence 45678999999999999999875443 666 8888777777888998753 46777776677778877665555
Q ss_pred eeeee-----eeeeeceEE----EEEecCCCeEEEeCCCCcEEEeecCCc
Q 032092 101 KVKRL-----HLFVKSHVI----VLFVQIHHTFATAGSDGAFNFWDKDSK 141 (147)
Q Consensus 101 ~~~~~-----~~~~~~~~~----~~fspdg~~latg~~Dg~i~iWd~~~~ 141 (147)
.-+.. -...++|.+ |+|+||+.+|||||.|++|++|...+.
T Consensus 601 ~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 601 VQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred eecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 32221 113577864 899999999999999999999998876
No 163
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.07 E-value=8.1e-10 Score=91.18 Aligned_cols=102 Identities=15% Similarity=0.195 Sum_probs=85.0
Q ss_pred CeEeecCCeEEEEECCCCccceeEecC--CCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCce
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINS--PLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE 78 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~--~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~ 78 (147)
+++++.|++|+|||+.++++ ++.+.. .+++..-.+...|.|-|+|+...|.++.+ +|-.+|+.+.+..||..
T Consensus 611 v~t~cQDrnirif~i~sgKq-~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~--~Df~sgEcvA~m~GHsE--- 684 (1080)
T KOG1408|consen 611 VVTVCQDRNIRIFDIESGKQ-VKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCF--VDFVSGECVAQMTGHSE--- 684 (1080)
T ss_pred EEEEecccceEEEeccccce-eeeecccccCCCceEEEEECCCccEEEEeecCCceEE--EEeccchhhhhhcCcch---
Confidence 47899999999999999975 344432 23345667888999999999999999999 77777888888889976
Q ss_pred EEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCC
Q 032092 79 TCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDS 140 (147)
Q Consensus 79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~ 140 (147)
.|+.+ .|.||-+.|++.++||.|.||.+-.
T Consensus 685 --~VTG~------------------------------kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 685 --AVTGV------------------------------KFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred --heeee------------------------------eecccchhheeecCCceEEEEECch
Confidence 46777 9999999999999999999998743
No 164
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.05 E-value=6.2e-10 Score=87.49 Aligned_cols=99 Identities=22% Similarity=0.240 Sum_probs=72.5
Q ss_pred EeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccC-CCEEEEEeeCCeEEEEeecCCC--Ccce--eEEEeccCCc
Q 032092 3 VGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPD-QQGFWVGSIEGRVGVHHLDDSQ--QSKN--FTFKCHRDGS 77 (147)
Q Consensus 3 ~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spd-g~~l~~g~~dg~i~i~~~d~~~--~~~~--~~~~~h~~~~ 77 (147)
.|..=|...+||+|++......+. .|+..|++|+++|. ..+||+++.|++.+| ||+|+ ++.. .....|+.
T Consensus 296 ~~~~~G~f~~iD~R~~~s~~~~~~-lh~kKI~sv~~NP~~p~~laT~s~D~T~kI--WD~R~l~~K~sp~lst~~Hrr-- 370 (498)
T KOG4328|consen 296 FGDNVGNFNVIDLRTDGSEYENLR-LHKKKITSVALNPVCPWFLATASLDQTAKI--WDLRQLRGKASPFLSTLPHRR-- 370 (498)
T ss_pred EeecccceEEEEeecCCccchhhh-hhhcccceeecCCCCchheeecccCcceee--eehhhhcCCCCcceecccccc--
Confidence 444456789999999765333332 24447999999997 467999999999999 78775 2221 12223554
Q ss_pred eEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecC
Q 032092 78 ETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKD 139 (147)
Q Consensus 78 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~ 139 (147)
+|++. .|||++-.|+|-+.|..|+|||..
T Consensus 371 ---sV~sA------------------------------yFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 371 ---SVNSA------------------------------YFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred ---eeeee------------------------------EEcCCCCceEeeccCCceEEeecc
Confidence 57777 999988669999999999999983
No 165
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.02 E-value=4.2e-09 Score=84.00 Aligned_cols=98 Identities=19% Similarity=0.291 Sum_probs=72.8
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC 80 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~ 80 (147)
++|++.|+.++||+ .-+....++ ...+..|++|+|.| .+|+|+..|...+ +|..+...+ + -|... -
T Consensus 383 ~~T~gqdk~v~lW~--~~k~~wt~~---~~d~~~~~~fhpsg-~va~Gt~~G~w~V--~d~e~~~lv-~--~~~d~---~ 448 (626)
T KOG2106|consen 383 LLTCGQDKHVRLWN--DHKLEWTKI---IEDPAECADFHPSG-VVAVGTATGRWFV--LDTETQDLV-T--IHTDN---E 448 (626)
T ss_pred eeeccCcceEEEcc--CCceeEEEE---ecCceeEeeccCcc-eEEEeeccceEEE--EecccceeE-E--EEecC---C
Confidence 58999999999999 222222222 23578999999999 9999999999988 888763332 2 23321 1
Q ss_pred eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCce
Q 032092 81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQ 142 (147)
Q Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~ 142 (147)
+++.+ .|+|||.+||.|+-|+.|+||-+....
T Consensus 449 ~ls~v------------------------------~ysp~G~~lAvgs~d~~iyiy~Vs~~g 480 (626)
T KOG2106|consen 449 QLSVV------------------------------RYSPDGAFLAVGSHDNHIYIYRVSANG 480 (626)
T ss_pred ceEEE------------------------------EEcCCCCEEEEecCCCeEEEEEECCCC
Confidence 34444 999999999999999999999886543
No 166
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.02 E-value=8.3e-10 Score=89.77 Aligned_cols=104 Identities=18% Similarity=0.214 Sum_probs=79.0
Q ss_pred CeEeecCCeEEEEECCCCccc--eeEecC--CCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeE--EEecc
Q 032092 1 MVVGTADRNLVVFNLQNPQTE--FKRINS--PLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFT--FKCHR 74 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~--~~~~~~--~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~--~~~h~ 74 (147)
|+++.+||.|.|+|.+..+-. -.++.. .|...|..++|-|-...|++.+.|.++++ ||+.+.+.... +.||.
T Consensus 67 LavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~--Wdvk~s~l~G~~~~~GH~ 144 (720)
T KOG0321|consen 67 LAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRP--WDVKTSRLVGGRLNLGHT 144 (720)
T ss_pred EEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeee--eeeccceeecceeecccc
Confidence 688999999999999875311 001111 35567999999995567899999999999 67665555444 66776
Q ss_pred CCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCC-CeEEEeCCCCcEEEeecCCc
Q 032092 75 DGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIH-HTFATAGSDGAFNFWDKDSK 141 (147)
Q Consensus 75 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg-~~latg~~Dg~i~iWd~~~~ 141 (147)
. .+-++ +|.|+. ..|+||+.||.|.|||++-.
T Consensus 145 ~-----SvkS~------------------------------cf~~~n~~vF~tGgRDg~illWD~R~n 177 (720)
T KOG0321|consen 145 G-----SVKSE------------------------------CFMPTNPAVFCTGGRDGEILLWDCRCN 177 (720)
T ss_pred c-----ccchh------------------------------hhccCCCcceeeccCCCcEEEEEEecc
Confidence 4 57777 999977 78999999999999998654
No 167
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.01 E-value=5.6e-10 Score=87.36 Aligned_cols=103 Identities=14% Similarity=0.177 Sum_probs=76.7
Q ss_pred CeEeecCCeEEEEECCCCcc--ceeEec-----------------CCCCcceEEEEEccC-CCEEEEEeeCCeEEEEeec
Q 032092 1 MVVGTADRNLVVFNLQNPQT--EFKRIN-----------------SPLKYQMRCVAAFPD-QQGFWVGSIEGRVGVHHLD 60 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~--~~~~~~-----------------~~~~~~i~~la~spd-g~~l~~g~~dg~i~i~~~d 60 (147)
+|+|+-|..|.|||+.-... |.-++- +.|...|.+|+|+.+ -+.||+|+.|.+|.+ ||
T Consensus 195 vAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l--WD 272 (463)
T KOG0270|consen 195 VAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL--WD 272 (463)
T ss_pred EEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE--EE
Confidence 48899999999999864432 111110 122233567777776 467999999999999 67
Q ss_pred CCCCcceeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCC-CeEEEeCCCCcEEEeecC
Q 032092 61 DSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIH-HTFATAGSDGAFNFWDKD 139 (147)
Q Consensus 61 ~~~~~~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg-~~latg~~Dg~i~iWd~~ 139 (147)
+.++++..++..|.. .|.++ +|+|.. .+|++|+.|++|++.|.+
T Consensus 273 ~~~g~p~~s~~~~~k-----~Vq~l------------------------------~wh~~~p~~LLsGs~D~~V~l~D~R 317 (463)
T KOG0270|consen 273 VDTGKPKSSITHHGK-----KVQTL------------------------------EWHPYEPSVLLSGSYDGTVALKDCR 317 (463)
T ss_pred cCCCCcceehhhcCC-----ceeEE------------------------------EecCCCceEEEeccccceEEeeecc
Confidence 777888888876654 36666 999975 899999999999999988
Q ss_pred C
Q 032092 140 S 140 (147)
Q Consensus 140 ~ 140 (147)
.
T Consensus 318 ~ 318 (463)
T KOG0270|consen 318 D 318 (463)
T ss_pred C
Confidence 4
No 168
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.01 E-value=2.4e-09 Score=84.33 Aligned_cols=138 Identities=11% Similarity=0.034 Sum_probs=78.8
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCC----CCcceeEEEeccCC
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDS----QQSKNFTFKCHRDG 76 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~----~~~~~~~~~~h~~~ 76 (147)
|++.+.+|.|.+||+++... .++........=+++|.|++|.+||+|+..|.|.|++.+.. +.+++.++-.-+..
T Consensus 359 l~~~~~~GeV~v~nl~~~~~-~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~ 437 (514)
T KOG2055|consen 359 LLASGGTGEVYVWNLRQNSC-LHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTA 437 (514)
T ss_pred EEEEcCCceEEEEecCCcce-EEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhhee
Confidence 35667889999999999854 44443322223478999999999999999999999433221 12333322111110
Q ss_pred --ceEEeecccee-eee-cCCCcceeeeeeeeeeee-e------ece-EEEEEecCCCeEEEeCCCCcEEEeecC
Q 032092 77 --SETCSVISFTS-ILA-GDAPKYSSFYKVKRLHLF-V------KSH-VIVLFVQIHHTFATAGSDGAFNFWDKD 139 (147)
Q Consensus 77 --~~~~~v~~~~~-~~~-~~~~~~~~~~~~~~~~~~-~------~~~-~~~~fspdg~~latg~~Dg~i~iWd~~ 139 (147)
...+..++..+ +.+ .-.+..+..+-..-.+.. + -+| ..++|||.|.+||-|..+|.+.+|.+.
T Consensus 438 Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 438 ITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 01111111111 111 112223333211111111 1 223 358999999999999999999999763
No 169
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.00 E-value=8.2e-09 Score=78.08 Aligned_cols=102 Identities=22% Similarity=0.317 Sum_probs=77.3
Q ss_pred ecCCeEEEEECCC-CccceeEecCCCCcceEEEEEccCCCEEEEEee-CCeEEEEeecCCCCcceeEEEeccCCceEEee
Q 032092 5 TADRNLVVFNLQN-PQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSI-EGRVGVHHLDDSQQSKNFTFKCHRDGSETCSV 82 (147)
Q Consensus 5 s~dg~v~iwdi~~-~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~-dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v 82 (147)
..|+.+++||+.. .. ....+. .+...++.++|+|+++.+++++. |+.+++ |+...+.....+.+|.. .+
T Consensus 131 ~~d~~~~~~~~~~~~~-~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-----~v 201 (466)
T COG2319 131 SLDGTVKLWDLSTPGK-LIRTLE-GHSESVTSLAFSPDGKLLASGSSLDGTIKL--WDLRTGKPLSTLAGHTD-----PV 201 (466)
T ss_pred CCCccEEEEEecCCCe-EEEEEe-cCcccEEEEEECCCCCEEEecCCCCCceEE--EEcCCCceEEeeccCCC-----ce
Confidence 3489999999997 32 223333 34457899999999999988886 999999 77766666667766654 34
Q ss_pred ccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCC-eEEEeCCCCcEEEeecCCceeee
Q 032092 83 ISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHH-TFATAGSDGAFNFWDKDSKQRLK 145 (147)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~-~latg~~Dg~i~iWd~~~~~~~~ 145 (147)
..+ +|+|+++ .+++++.|+.|++||...++.+.
T Consensus 202 ~~~------------------------------~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~ 235 (466)
T COG2319 202 SSL------------------------------AFSPDGGLLIASGSSDGTIRLWDLSTGKLLR 235 (466)
T ss_pred EEE------------------------------EEcCCcceEEEEecCCCcEEEEECCCCcEEe
Confidence 555 9999997 66666999999999988766654
No 170
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=98.99 E-value=6.9e-09 Score=79.00 Aligned_cols=138 Identities=17% Similarity=0.200 Sum_probs=88.3
Q ss_pred EeecCCeEEEEECCC-Ccc-cee-EecC---CCCcceEEEEEcc-CCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccC
Q 032092 3 VGTADRNLVVFNLQN-PQT-EFK-RINS---PLKYQMRCVAAFP-DQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRD 75 (147)
Q Consensus 3 ~gs~dg~v~iwdi~~-~~~-~~~-~~~~---~~~~~i~~la~sp-dg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~ 75 (147)
-|+..+.|++||+.+ +.. ++. +... ..+.-+.+++|+| +.+++|+|+--.++-|+.+|- +.+++.+-+|..
T Consensus 174 faGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~--~~pl~llggh~g 251 (406)
T KOG2919|consen 174 FAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG--RRPLQLLGGHGG 251 (406)
T ss_pred eecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC--CCceeeecccCC
Confidence 467788999999944 421 211 1111 1223478999999 467999999999999955554 578888888876
Q ss_pred Cc--eEEeeccceeeeecCCC-c--ceeeeeeeeeeeeeece-------EEEEEecCCCeEEEeCCCCcEEEeecCC-ce
Q 032092 76 GS--ETCSVISFTSILAGDAP-K--YSSFYKVKRLHLFVKSH-------VIVLFVQIHHTFATAGSDGAFNFWDKDS-KQ 142 (147)
Q Consensus 76 ~~--~~~~v~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~-------~~~~fspdg~~latg~~Dg~i~iWd~~~-~~ 142 (147)
.. ..+....-.++++.+-+ . +|..+....+++.+..| +-+..-|++++||+|+.||.|++||+++ +.
T Consensus 252 GvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn 331 (406)
T KOG2919|consen 252 GVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN 331 (406)
T ss_pred CeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC
Confidence 53 22333333344554444 2 23322222333333333 3457789999999999999999999987 44
No 171
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.96 E-value=8.4e-10 Score=88.38 Aligned_cols=77 Identities=16% Similarity=0.181 Sum_probs=58.7
Q ss_pred ceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeec
Q 032092 32 QMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKS 111 (147)
Q Consensus 32 ~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (147)
.|+..+|||||++||+-+.||.++|+++|.. +.+..++. + ...+
T Consensus 292 ~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~--eLlg~mkS------Y--FGGL-------------------------- 335 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQDGFLRIFDFDTQ--ELLGVMKS------Y--FGGL-------------------------- 335 (636)
T ss_pred cccceeEcCCCceEEEEecCceEEEeeccHH--HHHHHHHh------h--ccce--------------------------
Confidence 5788999999999999999999999777653 22211110 0 1111
Q ss_pred eEEEEEecCCCeEEEeCCCCcEEEeecCCceeee
Q 032092 112 HVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLK 145 (147)
Q Consensus 112 ~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~ 145 (147)
+=|+|||||++++|||.|.-|.||.+.+++.+-
T Consensus 336 -LCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVA 368 (636)
T KOG2394|consen 336 -LCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVA 368 (636)
T ss_pred -EEEEEcCCccEEEecCCcceEEEEEeccceEEE
Confidence 113999999999999999999999999988763
No 172
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.94 E-value=4.1e-09 Score=86.21 Aligned_cols=103 Identities=17% Similarity=0.243 Sum_probs=82.6
Q ss_pred CeEeecCCeEEEEECCCCccc-e---eEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCC
Q 032092 1 MVVGTADRNLVVFNLQNPQTE-F---KRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDG 76 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~-~---~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~ 76 (147)
||+||.|..|+||-+..+-.. . ..+-++.+..+.++.|+|..+.+...+..|+++| ||+.+++....+.+|...
T Consensus 95 LAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~i--~D~stqk~~~el~~h~d~ 172 (1012)
T KOG1445|consen 95 LATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSVYI--TDISTQKTAVELSGHTDK 172 (1012)
T ss_pred hhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCceEEE--EEcccCceeecccCCchh
Confidence 689999999999999865221 1 0111223346889999999888888888899999 888889998888888763
Q ss_pred ceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCC
Q 032092 77 SETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDS 140 (147)
Q Consensus 77 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~ 140 (147)
+-+. .|+.||.+||+++-|+.|+|+|-+.
T Consensus 173 -----vQSa------------------------------~WseDG~llatscKdkqirifDPRa 201 (1012)
T KOG1445|consen 173 -----VQSA------------------------------DWSEDGKLLATSCKDKQIRIFDPRA 201 (1012)
T ss_pred -----hhcc------------------------------ccccCCceEeeecCCcceEEeCCcc
Confidence 5566 9999999999999999999999764
No 173
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=98.94 E-value=7e-08 Score=72.98 Aligned_cols=139 Identities=19% Similarity=0.243 Sum_probs=90.4
Q ss_pred eEeec-CCeEEEEECCCCccceeEecCCCCcceEEEEEccCCC-EEEEEeeCCeEEEEeecCCCCccee-EEEeccCCc-
Q 032092 2 VVGTA-DRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQ-GFWVGSIEGRVGVHHLDDSQQSKNF-TFKCHRDGS- 77 (147)
Q Consensus 2 ~~gs~-dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~-~l~~g~~dg~i~i~~~d~~~~~~~~-~~~~h~~~~- 77 (147)
++++. |+.+++|++.... ....+. .+...+.+++++|++. .+++++.|+.|++ ||...+.... .+.+|....
T Consensus 171 ~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~--wd~~~~~~~~~~~~~~~~~~~ 246 (466)
T COG2319 171 ASGSSLDGTIKLWDLRTGK-PLSTLA-GHTDPVSSLAFSPDGGLLIASGSSDGTIRL--WDLSTGKLLRSTLSGHSDSVV 246 (466)
T ss_pred EecCCCCCceEEEEcCCCc-eEEeec-cCCCceEEEEEcCCcceEEEEecCCCcEEE--EECCCCcEEeeecCCCCccee
Confidence 45554 9999999999853 333343 3556799999999998 4555599999999 5766555555 567776542
Q ss_pred eEEeeccceeeee-cCCCcceeeeee--eeeeeeeece----EEEEEecCCCeEEEeCCCCcEEEeecCCceeee
Q 032092 78 ETCSVISFTSILA-GDAPKYSSFYKV--KRLHLFVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLK 145 (147)
Q Consensus 78 ~~~~v~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~ 145 (147)
..+.... ..++. +.+..++++... ........+| ..+.|+|++..+++++.|+.+++||.++.....
T Consensus 247 ~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 320 (466)
T COG2319 247 SSFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLS 320 (466)
T ss_pred EeECCCC-CEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEE
Confidence 1233333 23334 444445554421 1211222333 457999988888889999999999988776543
No 174
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.94 E-value=2.5e-08 Score=78.63 Aligned_cols=104 Identities=16% Similarity=0.139 Sum_probs=72.6
Q ss_pred EeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEee
Q 032092 3 VGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSV 82 (147)
Q Consensus 3 ~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v 82 (147)
+-..+|.|.+.|..+.+ .+.++..... .--.++++|||+++.+.+.||.|.+ +|+.+++.+.+++.-. ..
T Consensus 11 ~~~~~~~v~viD~~t~~-~~~~i~~~~~-~h~~~~~s~Dgr~~yv~~rdg~vsv--iD~~~~~~v~~i~~G~------~~ 80 (369)
T PF02239_consen 11 VERGSGSVAVIDGATNK-VVARIPTGGA-PHAGLKFSPDGRYLYVANRDGTVSV--IDLATGKVVATIKVGG------NP 80 (369)
T ss_dssp EEGGGTEEEEEETTT-S-EEEEEE-STT-EEEEEE-TT-SSEEEEEETTSEEEE--EETTSSSEEEEEE-SS------EE
T ss_pred EecCCCEEEEEECCCCe-EEEEEcCCCC-ceeEEEecCCCCEEEEEcCCCeEEE--EECCcccEEEEEecCC------Cc
Confidence 44678999999999975 4566654322 2345789999999999999999999 8988888777765322 12
Q ss_pred ccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCC-CCcEEEeecCCceeeec
Q 032092 83 ISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGS-DGAFNFWDKDSKQRLKV 146 (147)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~-Dg~i~iWd~~~~~~~~~ 146 (147)
..+ ++||||++++.+.. ++.+.++|.++.+.+++
T Consensus 81 ~~i------------------------------~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~ 115 (369)
T PF02239_consen 81 RGI------------------------------AVSPDGKYVYVANYEPGTVSVIDAETLEPVKT 115 (369)
T ss_dssp EEE------------------------------EE--TTTEEEEEEEETTEEEEEETTT--EEEE
T ss_pred ceE------------------------------EEcCCCCEEEEEecCCCceeEeccccccceee
Confidence 334 99999999887764 88999999999888764
No 175
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.93 E-value=3.7e-09 Score=81.88 Aligned_cols=81 Identities=17% Similarity=0.179 Sum_probs=59.5
Q ss_pred CCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEE-EeccCCceEEeeccceeeeecCCCcceeeeeeeeeee
Q 032092 29 LKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTF-KCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHL 107 (147)
Q Consensus 29 ~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~-~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (147)
|-..+..|+++||++.+++++-|+.|++-.+.. . ..+..| .||+.. |..+
T Consensus 150 hvSml~dVavS~D~~~IitaDRDEkIRvs~ypa-~-f~IesfclGH~eF-----VS~i---------------------- 200 (390)
T KOG3914|consen 150 HVSMLLDVAVSPDDQFIITADRDEKIRVSRYPA-T-FVIESFCLGHKEF-----VSTI---------------------- 200 (390)
T ss_pred hhhhhheeeecCCCCEEEEecCCceEEEEecCc-c-cchhhhccccHhh-----eeee----------------------
Confidence 344689999999999999999999999843322 1 122222 356642 3333
Q ss_pred eeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092 108 FVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF 147 (147)
Q Consensus 108 ~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~ 147 (147)
+.-|+ +.|++||+|+++++||..+++.+++|
T Consensus 201 --------sl~~~-~~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 201 --------SLTDN-YLLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred --------eeccC-ceeeecCCCCcEEEEecccCCccccc
Confidence 44444 66999999999999999999999876
No 176
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.91 E-value=2.7e-09 Score=85.56 Aligned_cols=71 Identities=17% Similarity=0.221 Sum_probs=53.9
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccC
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRD 75 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~ 75 (147)
||+.+.||.+||||..+++. .-...+ .-....|++|||||+++++|+.|.-|.||.+. ..+.+..-++|+.
T Consensus 305 LA~VSqDGfLRvF~fdt~eL-lg~mkS-YFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~--erRVVARGqGHkS 375 (636)
T KOG2394|consen 305 LATVSQDGFLRIFDFDTQEL-LGVMKS-YFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFE--ERRVVARGQGHKS 375 (636)
T ss_pred EEEEecCceEEEeeccHHHH-HHHHHh-hccceEEEEEcCCccEEEecCCcceEEEEEec--cceEEEecccccc
Confidence 68899999999999998753 211111 11358999999999999999999999996554 4566666667765
No 177
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=98.91 E-value=1.6e-08 Score=76.92 Aligned_cols=117 Identities=15% Similarity=0.127 Sum_probs=66.3
Q ss_pred CCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEE-----eccCCceEEeeccceeeee-cCCCcceeeee
Q 032092 28 PLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFK-----CHRDGSETCSVISFTSILA-GDAPKYSSFYK 101 (147)
Q Consensus 28 ~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~-----~h~~~~~~~~v~~~~~~~~-~~~~~~~~~~~ 101 (147)
.|+..|++|+|+.||++||+.+.|++|+||+.+..+.+...-++ +|.. ...++.+.-..+.+ -+.+...+|..
T Consensus 84 gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT-~V~FapDc~s~vv~~~~g~~l~vyk~ 162 (420)
T KOG2096|consen 84 GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPT-RVVFAPDCKSVVVSVKRGNKLCVYKL 162 (420)
T ss_pred ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCce-EEEECCCcceEEEEEccCCEEEEEEe
Confidence 35567999999999999999999999999544332221110000 1111 12333333333322 33334444444
Q ss_pred eeee----eee--------e-ece----EEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092 102 VKRL----HLF--------V-KSH----VIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146 (147)
Q Consensus 102 ~~~~----~~~--------~-~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~ 146 (147)
.++. ..+ + .-| .++-.--.+++|+|++.|.+|.||+++ |+.|.+
T Consensus 163 ~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~ 223 (420)
T KOG2096|consen 163 VKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQS 223 (420)
T ss_pred eecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeee
Confidence 3322 110 1 011 122333445899999999999999998 776653
No 178
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.90 E-value=2.3e-09 Score=57.22 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=21.6
Q ss_pred EEecCCCeEEEeCCCCcEEEee
Q 032092 116 LFVQIHHTFATAGSDGAFNFWD 137 (147)
Q Consensus 116 ~fspdg~~latg~~Dg~i~iWd 137 (147)
+|+|++++|+||+.|+.|++||
T Consensus 18 ~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 18 AWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEETTSSEEEEEETTSEEEEEE
T ss_pred EEecccccceeeCCCCEEEEEC
Confidence 9999999999999999999997
No 179
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=98.89 E-value=2.5e-08 Score=76.00 Aligned_cols=105 Identities=12% Similarity=0.176 Sum_probs=81.3
Q ss_pred cCCeEEEEECCCCc--cceeEecCC-CCcceEEEEEccCC----CEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCce
Q 032092 6 ADRNLVVFNLQNPQ--TEFKRINSP-LKYQMRCVAAFPDQ----QGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE 78 (147)
Q Consensus 6 ~dg~v~iwdi~~~~--~~~~~~~~~-~~~~i~~la~spdg----~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~ 78 (147)
..+.+.+|.....- +.++.+..+ +......++|+-|- -++|+|+.-|-|+| +|+.+++....+.+|..
T Consensus 62 G~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrV--id~~~~~~~~~~~ghG~--- 136 (385)
T KOG1034|consen 62 GGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRV--IDVVSGQCSKNYRGHGG--- 136 (385)
T ss_pred CCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEE--EecchhhhccceeccCc---
Confidence 34578888876543 344555433 33456777887652 36888999999999 89888888888888876
Q ss_pred EEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCC-CeEEEeCCCCcEEEeecCCceeeecC
Q 032092 79 TCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIH-HTFATAGSDGAFNFWDKDSKQRLKVF 147 (147)
Q Consensus 79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg-~~latg~~Dg~i~iWd~~~~~~~~~~ 147 (147)
+++.+ .|+|+. +++++||.|-.||+||+++..++-.|
T Consensus 137 --sINei------------------------------k~~p~~~qlvls~SkD~svRlwnI~~~~Cv~Vf 174 (385)
T KOG1034|consen 137 --SINEI------------------------------KFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVF 174 (385)
T ss_pred --cchhh------------------------------hcCCCCCcEEEEecCCceEEEEeccCCeEEEEe
Confidence 58888 999987 89999999999999999999987654
No 180
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=98.89 E-value=3.4e-09 Score=82.35 Aligned_cols=107 Identities=15% Similarity=0.130 Sum_probs=80.2
Q ss_pred CeEeecCCeEEEEECC--------CC-----c-cceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcc
Q 032092 1 MVVGTADRNLVVFNLQ--------NP-----Q-TEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSK 66 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~--------~~-----~-~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~ 66 (147)
||+|+++|.|.+|-.. +. + -.++.....|...|..++|+||+..+++|+.|+.+++ ||+..|..
T Consensus 80 LASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l--~Dv~~G~l 157 (434)
T KOG1009|consen 80 LASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRL--WDVHAGQL 157 (434)
T ss_pred eeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEE--EEecccee
Confidence 6899999999999776 20 0 1223333345567899999999999999999999999 88888888
Q ss_pred eeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceee
Q 032092 67 NFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRL 144 (147)
Q Consensus 67 ~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~ 144 (147)
...+..|... +... +|-|-++++++=+.|...+...++..+++
T Consensus 158 ~~~~~dh~~y-----vqgv------------------------------awDpl~qyv~s~s~dr~~~~~~~~~~~~~ 200 (434)
T KOG1009|consen 158 LAILDDHEHY-----VQGV------------------------------AWDPLNQYVASKSSDRHPEGFSAKLKQVI 200 (434)
T ss_pred Eeeccccccc-----ccee------------------------------ecchhhhhhhhhccCcccceeeeeeeeee
Confidence 8888778763 3444 77777777887777777777666655544
No 181
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=98.86 E-value=1.2e-08 Score=76.69 Aligned_cols=100 Identities=21% Similarity=0.315 Sum_probs=69.5
Q ss_pred eecCCeEEEEECCCCccceeEecC----CCCcceEEEEEcc--CCCEEEEEeeCCeEEEEeecCCCCcceeEEE-eccCC
Q 032092 4 GTADRNLVVFNLQNPQTEFKRINS----PLKYQMRCVAAFP--DQQGFWVGSIEGRVGVHHLDDSQQSKNFTFK-CHRDG 76 (147)
Q Consensus 4 gs~dg~v~iwdi~~~~~~~~~~~~----~~~~~i~~la~sp--dg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~-~h~~~ 76 (147)
+-.|..|.+|++.+..+.+....+ .++...++-+||| ||+.+++. .|+++.. ||.|+.+....+. .|..
T Consensus 140 sm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~--~D~RT~~~~~sI~dAHgq- 215 (370)
T KOG1007|consen 140 SMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQF--WDLRTMKKNNSIEDAHGQ- 215 (370)
T ss_pred EeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEE--EEccchhhhcchhhhhcc-
Confidence 345899999999987542222211 1234578889999 68888874 4688877 8888655444332 2322
Q ss_pred ceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCC-CeEEEeCCCCcEEEeecCCc
Q 032092 77 SETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIH-HTFATAGSDGAFNFWDKDSK 141 (147)
Q Consensus 77 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg-~~latg~~Dg~i~iWd~~~~ 141 (147)
.+.++ .|+|.- .+|+|||.||.|+|||++.-
T Consensus 216 ----~vrdl------------------------------DfNpnkq~~lvt~gDdgyvriWD~R~t 247 (370)
T KOG1007|consen 216 ----RVRDL------------------------------DFNPNKQHILVTCGDDGYVRIWDTRKT 247 (370)
T ss_pred ----eeeec------------------------------cCCCCceEEEEEcCCCccEEEEeccCC
Confidence 35555 999986 57999999999999999753
No 182
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.85 E-value=5.3e-07 Score=69.50 Aligned_cols=138 Identities=12% Similarity=0.065 Sum_probs=76.3
Q ss_pred eEeecCCeEEEEECCCCccce----eEecCCCCcceEEEEEccCCCEEEEEee-CCeEEEEeecCCCCc--ceeEEEecc
Q 032092 2 VVGTADRNLVVFNLQNPQTEF----KRINSPLKYQMRCVAAFPDQQGFWVGSI-EGRVGVHHLDDSQQS--KNFTFKCHR 74 (147)
Q Consensus 2 ~~gs~dg~v~iwdi~~~~~~~----~~~~~~~~~~i~~la~spdg~~l~~g~~-dg~i~i~~~d~~~~~--~~~~~~~h~ 74 (147)
++...++.|.+||+.+..... .....+.....+.++|+|||+++++.+. +++|.+|+++..+++ ...++..+.
T Consensus 142 v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p 221 (330)
T PRK11028 142 VPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMP 221 (330)
T ss_pred EeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCC
Confidence 345567999999998743211 0111111224678999999999887766 999999777643332 223332221
Q ss_pred CC--------ceEEeeccceeeeecCCCcceeeeeee------eeeeeee---ceEEEEEecCCCeEEEeCC-CCcEEEe
Q 032092 75 DG--------SETCSVISFTSILAGDAPKYSSFYKVK------RLHLFVK---SHVIVLFVQIHHTFATAGS-DGAFNFW 136 (147)
Q Consensus 75 ~~--------~~~~~v~~~~~~~~~~~~~~~~~~~~~------~~~~~~~---~~~~~~fspdg~~latg~~-Dg~i~iW 136 (147)
.. ...+..+.-.+.++.+.+.....+.+. +...+.+ ....++|+|||++|++++. +++|.+|
T Consensus 222 ~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~ 301 (330)
T PRK11028 222 ADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVY 301 (330)
T ss_pred CcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEE
Confidence 10 011223333334443433322222221 1111111 1235799999988887765 8999999
Q ss_pred ecC
Q 032092 137 DKD 139 (147)
Q Consensus 137 d~~ 139 (147)
+++
T Consensus 302 ~~~ 304 (330)
T PRK11028 302 EID 304 (330)
T ss_pred EEc
Confidence 874
No 183
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=5.3e-09 Score=81.31 Aligned_cols=73 Identities=21% Similarity=0.249 Sum_probs=58.1
Q ss_pred EEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceE
Q 032092 34 RCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHV 113 (147)
Q Consensus 34 ~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (147)
.++||+++|..+++|+.||++|+|+|- + -..+.....|.. .|.++
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~P-s-~~t~l~e~~~~~-----eV~DL---------------------------- 192 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWP-S-MLTILEEIAHHA-----EVKDL---------------------------- 192 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecC-c-chhhhhhHhhcC-----ccccc----------------------------
Confidence 789999999999999999999995552 2 223333334443 47888
Q ss_pred EEEEecCCCeEEEeCCCCcEEEeecCCceee
Q 032092 114 IVLFVQIHHTFATAGSDGAFNFWDKDSKQRL 144 (147)
Q Consensus 114 ~~~fspdg~~latg~~Dg~i~iWd~~~~~~~ 144 (147)
.|+|||+.|++-+.| ..+||+++++-.+
T Consensus 193 --~FS~dgk~lasig~d-~~~VW~~~~g~~~ 220 (398)
T KOG0771|consen 193 --DFSPDGKFLASIGAD-SARVWSVNTGAAL 220 (398)
T ss_pred --eeCCCCcEEEEecCC-ceEEEEeccCchh
Confidence 999999999999999 8999999988443
No 184
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=1.9e-09 Score=92.13 Aligned_cols=108 Identities=17% Similarity=0.203 Sum_probs=73.9
Q ss_pred CeEeecCCeEEEEECCCC---cc--ceeEecCCCCcceEEEEEccCC-CEEEEEeeCCeEEEEeecCCCCcceeEEEecc
Q 032092 1 MVVGTADRNLVVFNLQNP---QT--EFKRINSPLKYQMRCVAAFPDQ-QGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHR 74 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~---~~--~~~~~~~~~~~~i~~la~spdg-~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~ 74 (147)
||.|.+||.|.+||...- +. .+.+. ..|.++|+.|.|+|.+ +.||+|+.||.|.| ||..+-+..+++....
T Consensus 83 IaGG~edG~I~ly~p~~~~~~~~~~~la~~-~~h~G~V~gLDfN~~q~nlLASGa~~geI~i--WDlnn~~tP~~~~~~~ 159 (1049)
T KOG0307|consen 83 IAGGLEDGNIVLYDPASIIANASEEVLATK-SKHTGPVLGLDFNPFQGNLLASGADDGEILI--WDLNKPETPFTPGSQA 159 (1049)
T ss_pred eeccccCCceEEecchhhccCcchHHHhhh-cccCCceeeeeccccCCceeeccCCCCcEEE--eccCCcCCCCCCCCCC
Confidence 467899999999998762 11 11122 2466789999999975 59999999999999 6665432222221110
Q ss_pred CCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCC-CeEEEeCCCCcEEEeecCCceee
Q 032092 75 DGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIH-HTFATAGSDGAFNFWDKDSKQRL 144 (147)
Q Consensus 75 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg-~~latg~~Dg~i~iWd~~~~~~~ 144 (147)
....+ ..++|+..- ..||+++.+|++.|||++.++.+
T Consensus 160 ------~~~eI---------------------------~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pi 197 (1049)
T KOG0307|consen 160 ------PPSEI---------------------------KCLSWNRKVSHILASGSPSGRAVIWDLRKKKPI 197 (1049)
T ss_pred ------Ccccc---------------------------eEeccchhhhHHhhccCCCCCceeccccCCCcc
Confidence 11111 112888754 78999999999999999887554
No 185
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.82 E-value=1.3e-08 Score=90.75 Aligned_cols=141 Identities=13% Similarity=0.200 Sum_probs=97.6
Q ss_pred eEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEe
Q 032092 2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCS 81 (147)
Q Consensus 2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~ 81 (147)
+||+.||.|++|....+++. -.........++.+.|+.+|+.+.++..||.+.+ |-+. .++....++|....+.+.
T Consensus 2224 ltgs~dgsv~~~~w~~~~~v-~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l--~q~~-pk~~~s~qchnk~~~Df~ 2299 (2439)
T KOG1064|consen 2224 LTGSQDGSVRMFEWGHGQQV-VCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSL--WQAS-PKPYTSWQCHNKALSDFR 2299 (2439)
T ss_pred EecCCCceEEEEeccCCCeE-EEeeccCcchhhhhhhcccCCceeeeccCCceee--cccC-CcceeccccCCcccccee
Confidence 68999999999999988653 3343333356888999999999999999999999 4443 456667788876432221
Q ss_pred -eccceeeeecCCC---cceeeeeeeee---ee---eeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092 82 -VISFTSILAGDAP---KYSSFYKVKRL---HL---FVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF 147 (147)
Q Consensus 82 -v~~~~~~~~~~~~---~~~~~~~~~~~---~~---~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~ 147 (147)
+.++ +.++|+.. .+-.+..+... .. +..|-+-+++-|..++|+|||.+|.|++||++.++++|+|
T Consensus 2300 Fi~s~-~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~ 2374 (2439)
T KOG1064|consen 2300 FIGSL-LATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTF 2374 (2439)
T ss_pred eeehh-hhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHh
Confidence 2233 22333222 23334433221 11 2233356899999999999999999999999999988876
No 186
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=98.82 E-value=8.5e-08 Score=70.80 Aligned_cols=133 Identities=13% Similarity=0.111 Sum_probs=89.6
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCc---
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGS--- 77 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~--- 77 (147)
++.++.|+.++-||+.+++ +++...+|..-+.+++--.-...+.+|+.||+++| ||.++++...++...++..
T Consensus 129 i~~AgGD~~~y~~dlE~G~--i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRv--Wd~kt~k~v~~ie~yk~~~~lR 204 (325)
T KOG0649|consen 129 ILFAGGDGVIYQVDLEDGR--IQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRV--WDTKTQKHVSMIEPYKNPNLLR 204 (325)
T ss_pred EEEecCCeEEEEEEecCCE--EEEEEcCCcceeeeeeecccCcceeecCCCccEEE--EeccccceeEEeccccChhhcC
Confidence 4567899999999999995 33333356556899987444557889999999999 8888888777664433221
Q ss_pred -------eEEeeccceeeeecCCC-cceeeeeeeee-eeeeeceEE-EEEecCCCeEEEeCCCCcEEEeecC
Q 032092 78 -------ETCSVISFTSILAGDAP-KYSSFYKVKRL-HLFVKSHVI-VLFVQIHHTFATAGSDGAFNFWDKD 139 (147)
Q Consensus 78 -------~~~~v~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~-~~fspdg~~latg~~Dg~i~iWd~~ 139 (147)
.+..+++.+++-+|+.. ..+.+...+.. ..-+++|.. +.|-.| .+.++|.-..|.-|-+.
T Consensus 205 p~~g~wigala~~edWlvCGgGp~lslwhLrsse~t~vfpipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 205 PDWGKWIGALAVNEDWLVCGGGPKLSLWHLRSSESTCVFPIPARVHLVDFVDD--CVLIGGEGNHVQSYTLN 274 (325)
T ss_pred cccCceeEEEeccCceEEecCCCceeEEeccCCCceEEEecccceeEeeeecc--eEEEeccccceeeeeec
Confidence 24556666666665544 45555544433 445678765 677555 56666767788888653
No 187
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.80 E-value=4.5e-08 Score=83.22 Aligned_cols=137 Identities=12% Similarity=0.068 Sum_probs=94.4
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCccee-EEEeccCCceE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNF-TFKCHRDGSET 79 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~-~~~~h~~~~~~ 79 (147)
+++|+.-+.|.+|+....+++. ....|+..+.++.++-||.++++.|+|.++++|.+|.+ +... +.-+|+.....
T Consensus 148 i~~gsv~~~iivW~~~~dn~p~--~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~--~~~~~~~fgHsaRvw~ 223 (967)
T KOG0974|consen 148 IASGSVFGEIIVWKPHEDNKPI--RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSR--EVLGCTGFGHSARVWA 223 (967)
T ss_pred EEeccccccEEEEeccccCCcc--eecccCCceEEEEEccCCcEEEEEecCcceeeeecccc--cccCcccccccceeEE
Confidence 3678888999999999665554 23467788999999999999999999999999666554 3332 44567765322
Q ss_pred EeeccceeeeecCCCcceeeeeeeeeeeeeece-----EEEEEecCCCeEEEeCCCCcEEEeecCCc
Q 032092 80 CSVISFTSILAGDAPKYSSFYKVKRLHLFVKSH-----VIVLFVQIHHTFATAGSDGAFNFWDKDSK 141 (147)
Q Consensus 80 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~fspdg~~latg~~Dg~i~iWd~~~~ 141 (147)
.......++++|.|=++++|...-.......+| =+++..+..-...|++.||.+++||+..+
T Consensus 224 ~~~~~n~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 224 CCFLPNRIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred EEeccceeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 222222345556555766663111111133333 36888888889999999999999998653
No 188
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.80 E-value=4.3e-08 Score=82.01 Aligned_cols=101 Identities=18% Similarity=0.326 Sum_probs=71.3
Q ss_pred cCCeEEEEECCCCcccee--EecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCC-CCc-c-eeEEEeccCCceEE
Q 032092 6 ADRNLVVFNLQNPQTEFK--RINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDS-QQS-K-NFTFKCHRDGSETC 80 (147)
Q Consensus 6 ~dg~v~iwdi~~~~~~~~--~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~-~~~-~-~~~~~~h~~~~~~~ 80 (147)
.+..+.+|++.+..+-+- .+...|.+.+++.++||+++++|+|..||+|.+| .|.. +.. . ...+.=|..
T Consensus 179 ~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw-~d~~~~~~~~t~t~lHWH~~----- 252 (792)
T KOG1963|consen 179 HMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVW-RDFGSSDDSETCTLLHWHHD----- 252 (792)
T ss_pred EeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEE-eccccccccccceEEEeccc-----
Confidence 455688899987542111 1112344568999999999999999999999995 3443 111 1 112222332
Q ss_pred eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCce
Q 032092 81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQ 142 (147)
Q Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~ 142 (147)
.|+++ +|++||.+|.|||..|.+.+|-+++++
T Consensus 253 ~V~~L------------------------------~fS~~G~~LlSGG~E~VLv~Wq~~T~~ 284 (792)
T KOG1963|consen 253 EVNSL------------------------------SFSSDGAYLLSGGREGVLVLWQLETGK 284 (792)
T ss_pred cccee------------------------------EEecCCceEeecccceEEEEEeecCCC
Confidence 35666 999999999999999999999999876
No 189
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=98.79 E-value=1.3e-07 Score=75.61 Aligned_cols=100 Identities=15% Similarity=0.178 Sum_probs=75.6
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC 80 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~ 80 (147)
||+|+..|.-.+.|..+.. .+.... . ..|+++++|+|+|.+||+|+-|+.|.|+-.+.. ++......-|+. .
T Consensus 421 va~Gt~~G~w~V~d~e~~~-lv~~~~-d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~-g~~y~r~~k~~g----s 492 (626)
T KOG2106|consen 421 VAVGTATGRWFVLDTETQD-LVTIHT-D-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN-GRKYSRVGKCSG----S 492 (626)
T ss_pred EEEeeccceEEEEecccce-eEEEEe-c-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCC-CcEEEEeeeecC----c
Confidence 5789999999999999954 333222 2 468999999999999999999999999555543 333333322322 2
Q ss_pred eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeec
Q 032092 81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDK 138 (147)
Q Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~ 138 (147)
++..+ .||+|+++|.+-+.|-.|-.|..
T Consensus 493 ~ithL------------------------------DwS~Ds~~~~~~S~d~eiLyW~~ 520 (626)
T KOG2106|consen 493 PITHL------------------------------DWSSDSQFLVSNSGDYEILYWKP 520 (626)
T ss_pred eeEEe------------------------------eecCCCceEEeccCceEEEEEcc
Confidence 45555 99999999999999999999954
No 190
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.79 E-value=1.5e-08 Score=83.48 Aligned_cols=70 Identities=21% Similarity=0.313 Sum_probs=61.0
Q ss_pred ceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeec
Q 032092 32 QMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKS 111 (147)
Q Consensus 32 ~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (147)
.|..+||-|||..|+.+.. .++.+ +|+..|..+.++++|+. .|+.+
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlli--yD~ndG~llqtLKgHKD-----tVycV-------------------------- 59 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLV--YDTSDGTLLQPLKGHKD-----TVYCV-------------------------- 59 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEE--EeCCCcccccccccccc-----eEEEE--------------------------
Confidence 5899999999998887664 56777 89999999999999997 36666
Q ss_pred eEEEEEecCCCeEEEeCCCCcEEEeecC
Q 032092 112 HVIVLFVQIHHTFATAGSDGAFNFWDKD 139 (147)
Q Consensus 112 ~~~~~fspdg~~latg~~Dg~i~iWd~~ 139 (147)
+|+.||+.||+|++|+.|.+|+-+
T Consensus 60 ----Ays~dGkrFASG~aDK~VI~W~~k 83 (1081)
T KOG1538|consen 60 ----AYAKDGKRFASGSADKSVIIWTSK 83 (1081)
T ss_pred ----EEccCCceeccCCCceeEEEeccc
Confidence 999999999999999999999865
No 191
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=5.6e-08 Score=73.57 Aligned_cols=117 Identities=13% Similarity=0.224 Sum_probs=68.1
Q ss_pred CeEeecC-----CeEEEEECCCCccceeEecC--CCCcceEEEEEccC-C---CEEEEEeeCCeEEEEeecCCCCcceeE
Q 032092 1 MVVGTAD-----RNLVVFNLQNPQTEFKRINS--PLKYQMRCVAAFPD-Q---QGFWVGSIEGRVGVHHLDDSQQSKNFT 69 (147)
Q Consensus 1 l~~gs~d-----g~v~iwdi~~~~~~~~~~~~--~~~~~i~~la~spd-g---~~l~~g~~dg~i~i~~~d~~~~~~~~~ 69 (147)
||+|+.+ +.++||.-.+.......+.. .+..+|++|+|.|+ | ..||+++.|| |+| |.+.......
T Consensus 187 iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I--~~v~~~~s~i- 262 (361)
T KOG2445|consen 187 IAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRI--FKVKVARSAI- 262 (361)
T ss_pred EEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEE--EEEeeccchh-
Confidence 4566555 58899987765321222222 35578999999998 4 4689999999 999 5443211100
Q ss_pred EEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceE----EEEEecCCCeEEEeCCCCcEEEeecC
Q 032092 70 FKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHV----IVLFVQIHHTFATAGSDGAFNFWDKD 139 (147)
Q Consensus 70 ~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~fspdg~~latg~~Dg~i~iWd~~ 139 (147)
+..... ..+.+. . .++ ..+..+..|+ ++.|+-.|..|++.|.||.||+|...
T Consensus 263 ~~ee~~-----~~~~~~--------~----l~v-~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 263 EEEEVL-----APDLMT--------D----LPV-EKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred hhhccc-----CCCCcc--------c----cce-EEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 000000 000000 0 000 0011233343 46999999999999999999999753
No 192
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.75 E-value=8.8e-08 Score=79.01 Aligned_cols=128 Identities=18% Similarity=0.170 Sum_probs=78.1
Q ss_pred ecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEE-eccCCceEEeec
Q 032092 5 TADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFK-CHRDGSETCSVI 83 (147)
Q Consensus 5 s~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~-~h~~~~~~~~v~ 83 (147)
..+..+.+||...|.. .+++. +|+..|.++|++.||+.||+|+.|..+.+ |... ....++ .|.....+-+.+
T Consensus 30 AAg~rlliyD~ndG~l-lqtLK-gHKDtVycVAys~dGkrFASG~aDK~VI~--W~~k---lEG~LkYSH~D~IQCMsFN 102 (1081)
T KOG1538|consen 30 AAGSRLLVYDTSDGTL-LQPLK-GHKDTVYCVAYAKDGKRFASGSADKSVII--WTSK---LEGILKYSHNDAIQCMSFN 102 (1081)
T ss_pred ecCCEEEEEeCCCccc-ccccc-cccceEEEEEEccCCceeccCCCceeEEE--eccc---ccceeeeccCCeeeEeecC
Confidence 3456799999999864 34443 57778999999999999999999999999 7653 222222 254432222222
Q ss_pred cceee-eec--CCCcceeeeeeeee--eeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCC
Q 032092 84 SFTSI-LAG--DAPKYSSFYKVKRL--HLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDS 140 (147)
Q Consensus 84 ~~~~~-~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~ 140 (147)
.+.-+ ++- +|-+.|.-.+ +.+ ..+..-...|+|+.||++||-|-.||+|.|-|...
T Consensus 103 P~~h~LasCsLsdFglWS~~q-K~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~g 163 (1081)
T KOG1538|consen 103 PITHQLASCSLSDFGLWSPEQ-KSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNG 163 (1081)
T ss_pred chHHHhhhcchhhccccChhh-hhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCC
Confidence 22111 110 1111111000 000 00111124689999999999999999999998644
No 193
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.74 E-value=5.2e-08 Score=74.86 Aligned_cols=109 Identities=15% Similarity=0.237 Sum_probs=79.8
Q ss_pred CeEeecCCeEEEEECCCCcc----ceeEecCCCCcceEEEEEcc-CCCEEEEEeeCCeEEEEeecCCC---CcceeEEEe
Q 032092 1 MVVGTADRNLVVFNLQNPQT----EFKRINSPLKYQMRCVAAFP-DQQGFWVGSIEGRVGVHHLDDSQ---QSKNFTFKC 72 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~----~~~~~~~~~~~~i~~la~sp-dg~~l~~g~~dg~i~i~~~d~~~---~~~~~~~~~ 72 (147)
+..|+..|.|..+|+|...+ +.+.+. |...|++|..=. ++++|.+++++|+|.+ ||.|- ++.+.++.|
T Consensus 267 v~~GcRngeI~~iDLR~rnqG~~~~a~rly--h~Ssvtslq~Lq~s~q~LmaS~M~gkikL--yD~R~~K~~~~V~qYeG 342 (425)
T KOG2695|consen 267 VFNGCRNGEIFVIDLRCRNQGNGWCAQRLY--HDSSVTSLQILQFSQQKLMASDMTGKIKL--YDLRATKCKKSVMQYEG 342 (425)
T ss_pred eEecccCCcEEEEEeeecccCCCcceEEEE--cCcchhhhhhhccccceEeeccCcCceeE--eeehhhhcccceeeeec
Confidence 35688899999999998632 333443 334577776654 5889999999999999 66663 445888999
Q ss_pred ccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092 73 HRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146 (147)
Q Consensus 73 h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~ 146 (147)
|.+... ...+ -.+|....++++|.|...|||.++++.++.+
T Consensus 343 HvN~~a---~l~~------------------------------~v~~eeg~I~s~GdDcytRiWsl~~ghLl~t 383 (425)
T KOG2695|consen 343 HVNLSA---YLPA------------------------------HVKEEEGSIFSVGDDCYTRIWSLDSGHLLCT 383 (425)
T ss_pred cccccc---cccc------------------------------ccccccceEEEccCeeEEEEEecccCceeec
Confidence 976421 1112 3456667888899999999999999988765
No 194
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=98.73 E-value=4e-08 Score=75.14 Aligned_cols=103 Identities=13% Similarity=0.263 Sum_probs=72.1
Q ss_pred CCeEEEEECCCCccceeEecCCCCcceEEEEEccC-CCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeeccc
Q 032092 7 DRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPD-QQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISF 85 (147)
Q Consensus 7 dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spd-g~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~ 85 (147)
|-.|.+||+|..++++..+...|...|++|.|+|+ .+.|++||.||-|.| +|+......-.+. |.- .+..++..
T Consensus 142 ~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnl--fD~~~d~EeDaL~-~vi-N~~sSI~~- 216 (376)
T KOG1188|consen 142 DASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNL--FDTKKDNEEDALL-HVI-NHGSSIHL- 216 (376)
T ss_pred ceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEe--eecCCCcchhhHH-Hhh-cccceeee-
Confidence 55789999999877666565556667999999995 789999999999999 7775321111110 000 01112333
Q ss_pred eeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCC-CeEEEeCCCCcEEEeecCCcee
Q 032092 86 TSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIH-HTFATAGSDGAFNFWDKDSKQR 143 (147)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg-~~latg~~Dg~i~iWd~~~~~~ 143 (147)
+.|+.++ +.+.+=+-+.+..+|+++.+..
T Consensus 217 -----------------------------igw~~~~ykrI~clTH~Etf~~~ele~~~~ 246 (376)
T KOG1188|consen 217 -----------------------------IGWLSKKYKRIMCLTHMETFAIYELEDGSE 246 (376)
T ss_pred -----------------------------eeeecCCcceEEEEEccCceeEEEccCCCh
Confidence 3899888 5677778899999999988764
No 195
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=98.73 E-value=9.9e-08 Score=74.54 Aligned_cols=107 Identities=13% Similarity=0.123 Sum_probs=81.7
Q ss_pred CeEeecCCeEEEEECCCC-----ccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccC
Q 032092 1 MVVGTADRNLVVFNLQNP-----QTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRD 75 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~-----~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~ 75 (147)
||+|+.|..+++|++.+- .+|+.....+|...|.||+|....+.+.+|..+|+|.+ -|+.+.+.++.+....+
T Consensus 71 L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~--HDiEt~qsi~V~~~~~~ 148 (609)
T KOG4227|consen 71 LASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIK--HDIETKQSIYVANENNN 148 (609)
T ss_pred EeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEe--eecccceeeeeecccCc
Confidence 689999999999998532 13555455566667999999988888999999999999 56655566666542222
Q ss_pred CceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCce
Q 032092 76 GSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQ 142 (147)
Q Consensus 76 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~ 142 (147)
. ..|+.+ .-||..+.||+.+.||.|.|||.++.+
T Consensus 149 ~---~~VY~m------------------------------~~~P~DN~~~~~t~~~~V~~~D~Rd~~ 182 (609)
T KOG4227|consen 149 R---GDVYHM------------------------------DQHPTDNTLIVVTRAKLVSFIDNRDRQ 182 (609)
T ss_pred c---cceeec------------------------------ccCCCCceEEEEecCceEEEEeccCCC
Confidence 2 235555 789988999999999999999998765
No 196
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.72 E-value=2.1e-07 Score=74.62 Aligned_cols=93 Identities=12% Similarity=0.120 Sum_probs=60.7
Q ss_pred CeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEe-eCCeEEEEeecCCCCcceeEEEeccCCceEEeeccce
Q 032092 8 RNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGS-IEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFT 86 (147)
Q Consensus 8 g~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~-~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~~ 86 (147)
..|++||+.+++.. .+.. ......+++|+|||+.|+.++ .+|.+.||.+|..+++ ...+..+.. .+.+.
T Consensus 228 ~~i~i~dl~tg~~~--~l~~-~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~-----~~~~~- 297 (429)
T PRK01742 228 SQLVVHDLRSGARK--VVAS-FRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAG-----NNTEP- 297 (429)
T ss_pred cEEEEEeCCCCceE--EEec-CCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCC-----CcCCE-
Confidence 47999999887531 2221 122345789999999988765 6898888878876543 334443321 12333
Q ss_pred eeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEe-CCCCcEEEeecC
Q 032092 87 SILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATA-GSDGAFNFWDKD 139 (147)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg-~~Dg~i~iWd~~ 139 (147)
+|+|||+.|+.+ ..+|...||++.
T Consensus 298 -----------------------------~wSpDG~~i~f~s~~~g~~~I~~~~ 322 (429)
T PRK01742 298 -----------------------------SWSPDGQSILFTSDRSGSPQVYRMS 322 (429)
T ss_pred -----------------------------EECCCCCEEEEEECCCCCceEEEEE
Confidence 899999766544 457778888764
No 197
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.70 E-value=5.6e-08 Score=78.49 Aligned_cols=104 Identities=21% Similarity=0.320 Sum_probs=77.7
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccC--CCEEEEEeeCCeEEEEeecCCCCc--------ceeEE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPD--QQGFWVGSIEGRVGVHHLDDSQQS--------KNFTF 70 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spd--g~~l~~g~~dg~i~i~~~d~~~~~--------~~~~~ 70 (147)
|++||+|-.+-|||.-.. ++.+.+..+|...|.|+.|-|. .+.+++|..|..|+++|.+...+. ...-+
T Consensus 65 L~SGSDD~r~ivWd~~~~-KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~ 143 (758)
T KOG1310|consen 65 LASGSDDTRLIVWDPFEY-KLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCW 143 (758)
T ss_pred EeecCCcceEEeecchhc-ceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhh
Confidence 689999999999999976 4677887777778999999995 567889999999999544432111 11122
Q ss_pred EeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCC-CeEEEeCCCCcEEEeecCC
Q 032092 71 KCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIH-HTFATAGSDGAFNFWDKDS 140 (147)
Q Consensus 71 ~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg-~~latg~~Dg~i~iWd~~~ 140 (147)
.+|... +-. ++-.|++ +.|-+++.||+|+.+|+++
T Consensus 144 ~cht~r-----VKr------------------------------ia~~p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 144 SCHTDR-----VKR------------------------------IATAPNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred hhhhhh-----hhh------------------------------eecCCCCCceEEEecCCcceeeecccC
Confidence 334321 222 2778888 8999999999999999986
No 198
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.69 E-value=6.6e-09 Score=86.98 Aligned_cols=96 Identities=14% Similarity=0.232 Sum_probs=81.0
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC 80 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~ 80 (147)
+++|+.|..|+||...+..++ ... .+|...|+.+|.+.+..++|+++.|..|++ |-...+.++..+.+|+.
T Consensus 205 Iitgsdd~lvKiwS~et~~~l-As~-rGhs~ditdlavs~~n~~iaaaS~D~vIrv--Wrl~~~~pvsvLrghtg----- 275 (1113)
T KOG0644|consen 205 IITGSDDRLVKIWSMETARCL-ASC-RGHSGDITDLAVSSNNTMIAAASNDKVIRV--WRLPDGAPVSVLRGHTG----- 275 (1113)
T ss_pred EeecCccceeeeeeccchhhh-ccC-CCCccccchhccchhhhhhhhcccCceEEE--EecCCCchHHHHhcccc-----
Confidence 579999999999998887543 222 256677999999999999999999999999 88888889888999986
Q ss_pred eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecC
Q 032092 81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKD 139 (147)
Q Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~ 139 (147)
+|+++ +|+|-. +.+.||++++||.+
T Consensus 276 avtai------------------------------afsP~~----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 276 AVTAI------------------------------AFSPRA----SSSDDGTCRIWDAR 300 (1113)
T ss_pred ceeee------------------------------ccCccc----cCCCCCceEecccc
Confidence 57777 999974 66789999999987
No 199
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=98.68 E-value=3.5e-07 Score=75.38 Aligned_cols=136 Identities=10% Similarity=0.099 Sum_probs=88.8
Q ss_pred CeEeecCCeEEEEECCCCc----------------cce-------e------EecCCCCcceEEEEEccCCCEEEEEeeC
Q 032092 1 MVVGTADRNLVVFNLQNPQ----------------TEF-------K------RINSPLKYQMRCVAAFPDQQGFWVGSIE 51 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~----------------~~~-------~------~~~~~~~~~i~~la~spdg~~l~~g~~d 51 (147)
||++|.|..||||.+.-.. +++ . .+.-+|...|.++.|+|.+..|++++.|
T Consensus 209 laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaD 288 (764)
T KOG1063|consen 209 LASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASAD 288 (764)
T ss_pred EEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccC
Confidence 6899999999999875432 000 0 1111455679999999999999999999
Q ss_pred CeEEEEeecCCCCcceeE--EE----eccCC---ceEEeeccceeeeecCCCcceeeeeeeee----eeeeeceE----E
Q 032092 52 GRVGVHHLDDSQQSKNFT--FK----CHRDG---SETCSVISFTSILAGDAPKYSSFYKVKRL----HLFVKSHV----I 114 (147)
Q Consensus 52 g~i~i~~~d~~~~~~~~~--~~----~h~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~----~ 114 (147)
.++.+ |.+.+..-+.. .+ ++... +..+..++...++.|.-.+...++..+.. ...+.||+ .
T Consensus 289 ksmii--W~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~d 366 (764)
T KOG1063|consen 289 KSMII--WKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKD 366 (764)
T ss_pred cceEE--EecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeecccccccccccee
Confidence 99999 65543322221 11 12211 12344555444555666666666622211 22456775 6
Q ss_pred EEEecCCCeEEEeCCCCcEEEeec
Q 032092 115 VLFVQIHHTFATAGSDGAFNFWDK 138 (147)
Q Consensus 115 ~~fspdg~~latg~~Dg~i~iWd~ 138 (147)
++|+|.|.+|+|.|.|.+-|++-.
T Consensus 367 v~W~psGeflLsvs~DQTTRlFa~ 390 (764)
T KOG1063|consen 367 VDWDPSGEFLLSVSLDQTTRLFAR 390 (764)
T ss_pred eeecCCCCEEEEeccccceeeecc
Confidence 999999999999999999998754
No 200
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.68 E-value=3.4e-07 Score=75.34 Aligned_cols=143 Identities=14% Similarity=0.169 Sum_probs=83.5
Q ss_pred CeEeecCCeEEEEECCCCccc-ee---EecCCCCcceEEEEEccCCC--EEEEEeeCCeEEEEeecCCCCcc-eeEE--E
Q 032092 1 MVVGTADRNLVVFNLQNPQTE-FK---RINSPLKYQMRCVAAFPDQQ--GFWVGSIEGRVGVHHLDDSQQSK-NFTF--K 71 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~-~~---~~~~~~~~~i~~la~spdg~--~l~~g~~dg~i~i~~~d~~~~~~-~~~~--~ 71 (147)
||.|+.+|.|.+||++.+..+ .. .....|..++..+.|-.+.. -|++++.||+|..|+.|...... .... .
T Consensus 258 l~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~ 337 (555)
T KOG1587|consen 258 LAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESK 337 (555)
T ss_pred EEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccc
Confidence 578899999999999987541 11 12234566788888876644 49999999999996444332100 0000 1
Q ss_pred eccC---------CceEEeeccceeeeecCCCcceee---eeee-------eee----eeeeceEEEEEecCC-CeEEEe
Q 032092 72 CHRD---------GSETCSVISFTSILAGDAPKYSSF---YKVK-------RLH----LFVKSHVIVLFVQIH-HTFATA 127 (147)
Q Consensus 72 ~h~~---------~~~~~~v~~~~~~~~~~~~~~~~~---~~~~-------~~~----~~~~~~~~~~fspdg-~~latg 127 (147)
.|.. ....+....-..+..|.|.+.... +... +.+ .+...|..+.++|-+ +.|+|+
T Consensus 338 ~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~ 417 (555)
T KOG1587|consen 338 KHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSV 417 (555)
T ss_pred cccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeee
Confidence 1110 012333333344666777653321 1111 111 123445679999988 566666
Q ss_pred CCCCcEEEeecC-Cceee
Q 032092 128 GSDGAFNFWDKD-SKQRL 144 (147)
Q Consensus 128 ~~Dg~i~iWd~~-~~~~~ 144 (147)
+ |-+|+||... ....+
T Consensus 418 g-DW~vriWs~~~~~~Pl 434 (555)
T KOG1587|consen 418 G-DWTVRIWSEDVIASPL 434 (555)
T ss_pred c-cceeEeccccCCCCcc
Confidence 6 9999999977 44444
No 201
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.67 E-value=4.6e-07 Score=69.87 Aligned_cols=102 Identities=14% Similarity=0.102 Sum_probs=63.2
Q ss_pred eEeecCCeEEEEECCCCcc--ceeEecCCCCcceEEEEEccCCCEEEEEe-eCCeEEEEeecCCCCcceeEEEeccCCce
Q 032092 2 VVGTADRNLVVFNLQNPQT--EFKRINSPLKYQMRCVAAFPDQQGFWVGS-IEGRVGVHHLDDSQQSKNFTFKCHRDGSE 78 (147)
Q Consensus 2 ~~gs~dg~v~iwdi~~~~~--~~~~~~~~~~~~i~~la~spdg~~l~~g~-~dg~i~i~~~d~~~~~~~~~~~~h~~~~~ 78 (147)
++...++.|++||+.+..+ ..+.+.. ......|+++||+++|++++ .++.|.+|+++ .+++.. .........
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~~--~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~-~~g~l~-~~~~~~~~~- 80 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVDV--PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIA-DDGALT-FAAESPLPG- 80 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEec--CCCCccEEECCCCCEEEEEECCCCcEEEEEEC-CCCceE-EeeeecCCC-
Confidence 3446789999999974322 2233322 23467899999999887654 58888885554 233221 111111000
Q ss_pred EEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCC-CCcEEEeecCC
Q 032092 79 TCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGS-DGAFNFWDKDS 140 (147)
Q Consensus 79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~-Dg~i~iWd~~~ 140 (147)
.+.. ++|+|+|++|++++. ++.|.+||+++
T Consensus 81 --~p~~------------------------------i~~~~~g~~l~v~~~~~~~v~v~~~~~ 111 (330)
T PRK11028 81 --SPTH------------------------------ISTDHQGRFLFSASYNANCVSVSPLDK 111 (330)
T ss_pred --CceE------------------------------EEECCCCCEEEEEEcCCCeEEEEEECC
Confidence 1122 399999988777664 88999999864
No 202
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.67 E-value=1.4e-06 Score=69.86 Aligned_cols=132 Identities=11% Similarity=0.009 Sum_probs=76.8
Q ss_pred CeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEE-EEeeCCeEEEEeecCCCCcceeEEEeccC--CceEEeecc
Q 032092 8 RNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFW-VGSIEGRVGVHHLDDSQQSKNFTFKCHRD--GSETCSVIS 84 (147)
Q Consensus 8 g~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~-~g~~dg~i~i~~~d~~~~~~~~~~~~h~~--~~~~~~v~~ 84 (147)
..|.+||+.+++. ..+.. ....+.+.+|||||+.++ +.+.+|...||.+|...+. ...+..+.. ....+..+.
T Consensus 220 ~~I~~~dl~~g~~--~~l~~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG 295 (427)
T PRK02889 220 PVVYVHDLATGRR--RVVAN-FKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDG 295 (427)
T ss_pred cEEEEEECCCCCE--EEeec-CCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCC
Confidence 4699999998853 22321 223466899999999887 4677888888778876443 334433321 122344444
Q ss_pred ceeeeecCCC-cceeee-eee--ee-eeeeec--eEEEEEecCCCeEEEeCCCC---cEEEeecCCcee
Q 032092 85 FTSILAGDAP-KYSSFY-KVK--RL-HLFVKS--HVIVLFVQIHHTFATAGSDG---AFNFWDKDSKQR 143 (147)
Q Consensus 85 ~~~~~~~~~~-~~~~~~-~~~--~~-~~~~~~--~~~~~fspdg~~latg~~Dg---~i~iWd~~~~~~ 143 (147)
-.++..+... ...++. ++. .. ...+.+ ....+|+|||++|+..+.++ .|.+||+.+++.
T Consensus 296 ~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~ 364 (427)
T PRK02889 296 RSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV 364 (427)
T ss_pred CEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCe
Confidence 3333333322 222222 111 11 112222 23579999999988766554 699999987653
No 203
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.66 E-value=2.2e-07 Score=75.41 Aligned_cols=90 Identities=13% Similarity=0.232 Sum_probs=64.7
Q ss_pred EEEECCCCcc-ceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeeccceeee
Q 032092 11 VVFNLQNPQT-EFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFTSIL 89 (147)
Q Consensus 11 ~iwdi~~~~~-~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~~~~~ 89 (147)
.+|++.+.+. .+.....+.+.++.|.|++|+.+.|+.|+.||+|.+ ||...+. .++... .+.++-+
T Consensus 239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiL--yD~~~~~--t~~~ka-----~~~P~~i---- 305 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIIL--YDTTRGV--TLLAKA-----EFIPTLI---- 305 (545)
T ss_pred EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEE--EEcCCCe--eeeeee-----cccceEE----
Confidence 4677765431 122223356667999999999999999999999999 7765432 222211 1234444
Q ss_pred ecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecC
Q 032092 90 AGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKD 139 (147)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~ 139 (147)
+|||+|..|+.|+.-|.+.+||+.
T Consensus 306 --------------------------aWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 306 --------------------------AWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred --------------------------EEcCCCcEEEEEcCCceEEEEEee
Confidence 999999999999999999999974
No 204
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.66 E-value=1.8e-07 Score=80.25 Aligned_cols=105 Identities=15% Similarity=0.197 Sum_probs=70.3
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEcc-CCCEEEEEeeCCeEEEEeecCCCC---cceeEEEeccCC
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFP-DQQGFWVGSIEGRVGVHHLDDSQQ---SKNFTFKCHRDG 76 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~sp-dg~~l~~g~~dg~i~i~~~d~~~~---~~~~~~~~h~~~ 76 (147)
|+++++-..|+|||+.+.++ .+.+-.....-++++.-+- .|+.+++|..||.+++ +|.|-. ..+..++.|...
T Consensus 1180 Ll~tGd~r~IRIWDa~~E~~-~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRv--yD~R~a~~ds~v~~~R~h~~~ 1256 (1387)
T KOG1517|consen 1180 LLVTGDVRSIRIWDAHKEQV-VADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRV--YDRRMAPPDSLVCVYREHNDV 1256 (1387)
T ss_pred EEecCCeeEEEEEeccccee-EeecccCCCccceeecccccCCceEEEeecCCceEE--eecccCCccccceeecccCCc
Confidence 35566688999999998643 3333222223466665433 3799999999999999 776632 234445555432
Q ss_pred ceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCC-CeEEEeCCCCcEEEeecCCc
Q 032092 77 SETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIH-HTFATAGSDGAFNFWDKDSK 141 (147)
Q Consensus 77 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg-~~latg~~Dg~i~iWd~~~~ 141 (147)
. ++.. +.+.+.| ..|++|+.||.|++||++..
T Consensus 1257 ~---~Iv~------------------------------~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1257 E---PIVH------------------------------LSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred c---ccee------------------------------EEeecCCCcceeeeccCCeEEEEecccC
Confidence 1 1222 3788877 56999999999999999863
No 205
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.66 E-value=9.8e-08 Score=76.94 Aligned_cols=126 Identities=15% Similarity=0.189 Sum_probs=81.8
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC 80 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~ 80 (147)
++.++.||++.|-+-... . ...-++|...+.+-.|+|||.-|++.+.||.|+| |.. +|-..-++. .
T Consensus 78 ~~i~s~DGkf~il~k~~r-V--E~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKi--WSr-sGMLRStl~-Q------- 143 (737)
T KOG1524|consen 78 LLICSNDGRFVILNKSAR-V--ERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKI--WSR-SGMLRSTVV-Q------- 143 (737)
T ss_pred EEEEcCCceEEEecccch-h--hhhhhhhhhhhhhcccCCCCceeeeecCCceEEE--Eec-cchHHHHHh-h-------
Confidence 467899999998875542 2 2222356667889999999999999999999999 543 232211111 0
Q ss_pred eeccceeeeecCCCcceee--------eeeeeeee--eeece----EEEEEecCCCeEEEeCCCCcEEEeecCC
Q 032092 81 SVISFTSILAGDAPKYSSF--------YKVKRLHL--FVKSH----VIVLFVQIHHTFATAGSDGAFNFWDKDS 140 (147)
Q Consensus 81 ~v~~~~~~~~~~~~~~~~~--------~~~~~~~~--~~~~~----~~~~fspdg~~latg~~Dg~i~iWd~~~ 140 (147)
.-.++..+..++++.-.+| ++|..... .-++| ++|.|+|....++|||.|-..+|||...
T Consensus 144 ~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G 217 (737)
T KOG1524|consen 144 NEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG 217 (737)
T ss_pred cCceeEEEEECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC
Confidence 1123333444555532221 22322222 22555 5799999999999999999999999753
No 206
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.66 E-value=1.7e-07 Score=72.40 Aligned_cols=110 Identities=17% Similarity=0.250 Sum_probs=72.2
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccC-CCEEEEEeeCCeEEEEeecCCC--CcceeEEEeccCC-
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPD-QQGFWVGSIEGRVGVHHLDDSQ--QSKNFTFKCHRDG- 76 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spd-g~~l~~g~~dg~i~i~~~d~~~--~~~~~~~~~h~~~- 76 (147)
+|++..|-.|++||-... .+ ..+.+..+..|.||||-|. +..|++|+..|.+ ||..|.+- ++.+.....|...
T Consensus 113 fava~nddvVriy~ksst-~p-t~Lks~sQrnvtclawRPlsaselavgCr~gIc-iW~~s~tln~~r~~~~~s~~~~qv 189 (445)
T KOG2139|consen 113 FAVATNDDVVRIYDKSST-CP-TKLKSVSQRNVTCLAWRPLSASELAVGCRAGIC-IWSDSRTLNANRNIRMMSTHHLQV 189 (445)
T ss_pred hhhhccCcEEEEeccCCC-CC-ceecchhhcceeEEEeccCCcceeeeeecceeE-EEEcCcccccccccccccccchhh
Confidence 477889999999999873 33 2344444557999999997 5678999887755 65444321 1111101111110
Q ss_pred ----ceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCC-CCcEEEeecCCceee
Q 032092 77 ----SETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGS-DGAFNFWDKDSKQRL 144 (147)
Q Consensus 77 ----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~-Dg~i~iWd~~~~~~~ 144 (147)
++ .+|++ +.|++||..|++++. |..|.|||..++.++
T Consensus 190 l~~pgh-~pVts------------------------------mqwn~dgt~l~tAS~gsssi~iWdpdtg~~~ 231 (445)
T KOG2139|consen 190 LQDPGH-NPVTS------------------------------MQWNEDGTILVTASFGSSSIMIWDPDTGQKI 231 (445)
T ss_pred eeCCCC-ceeeE------------------------------EEEcCCCCEEeecccCcceEEEEcCCCCCcc
Confidence 01 13444 499999999999987 678999999887653
No 207
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.65 E-value=3.2e-07 Score=74.12 Aligned_cols=107 Identities=11% Similarity=0.134 Sum_probs=85.3
Q ss_pred CeEeecCCeEEEEECCCCccceeEec-CCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRIN-SPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSET 79 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~-~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~ 79 (147)
||-|...|.|.+|++..++. ..++. ..|...|.++.++.+-.+|.+++.|+.+-. |+..+.+....+++.+.
T Consensus 73 lvlgt~~g~v~~ys~~~g~i-t~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~--~~~~~~~~~~~~~~~~~---- 145 (541)
T KOG4547|consen 73 LVLGTPQGSVLLYSVAGGEI-TAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVY--ILEKEKVIIRIWKEQKP---- 145 (541)
T ss_pred EEeecCCccEEEEEecCCeE-EEEEecCCCCCcceeeecccccCceEecCCceeEEE--EecccceeeeeeccCCC----
Confidence 46678899999999999864 23343 345667999999999899999999999988 77776666666665443
Q ss_pred EeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092 80 CSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF 147 (147)
Q Consensus 80 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~ 147 (147)
.+.++ +.+|||++|++|+ +.|++||+++++.+.+|
T Consensus 146 -~~~sl------------------------------~is~D~~~l~~as--~~ik~~~~~~kevv~~f 180 (541)
T KOG4547|consen 146 -LVSSL------------------------------CISPDGKILLTAS--RQIKVLDIETKEVVITF 180 (541)
T ss_pred -ccceE------------------------------EEcCCCCEEEecc--ceEEEEEccCceEEEEe
Confidence 24455 9999999999987 68999999999999887
No 208
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.65 E-value=3.7e-07 Score=68.86 Aligned_cols=102 Identities=18% Similarity=0.236 Sum_probs=71.2
Q ss_pred eecCCeEEEEECCCCccceeE-------ecCCCCcceEEEEEcc-CCCEEEEEeeCCeEEEEeecCCCC---cceeEEEe
Q 032092 4 GTADRNLVVFNLQNPQTEFKR-------INSPLKYQMRCVAAFP-DQQGFWVGSIEGRVGVHHLDDSQQ---SKNFTFKC 72 (147)
Q Consensus 4 gs~dg~v~iwdi~~~~~~~~~-------~~~~~~~~i~~la~sp-dg~~l~~g~~dg~i~i~~~d~~~~---~~~~~~~~ 72 (147)
++.+-.+|||-+...+..+.. ..+....|+++..|+. |.+++.+++.|-++.| ||+.++ .....+-.
T Consensus 117 ATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTi--Wdie~~~~~~vkTQLIA 194 (364)
T KOG0290|consen 117 ATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTI--WDIETGVSGTVKTQLIA 194 (364)
T ss_pred hcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEE--EEEeeccccceeeEEEe
Confidence 345567999999853322210 1122334688888876 5789999999999999 555443 23444556
Q ss_pred ccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCC-CeEEEeCCCCcEEEeecCCce
Q 032092 73 HRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIH-HTFATAGSDGAFNFWDKDSKQ 142 (147)
Q Consensus 73 h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg-~~latg~~Dg~i~iWd~~~~~ 142 (147)
|..+ |..+ +|...+ ++||+.|.||.||++|++...
T Consensus 195 HDKE-----V~DI------------------------------af~~~s~~~FASvgaDGSvRmFDLR~le 230 (364)
T KOG0290|consen 195 HDKE-----VYDI------------------------------AFLKGSRDVFASVGADGSVRMFDLRSLE 230 (364)
T ss_pred cCcc-----eeEE------------------------------EeccCccceEEEecCCCcEEEEEecccc
Confidence 6653 5565 999977 899999999999999998653
No 209
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.64 E-value=5e-07 Score=68.79 Aligned_cols=136 Identities=9% Similarity=0.079 Sum_probs=88.3
Q ss_pred CeEeecCCeEEEEECCCCc--cceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEee-cCCCCcceeEEEeccCCc
Q 032092 1 MVVGTADRNLVVFNLQNPQ--TEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHL-DDSQQSKNFTFKCHRDGS 77 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~--~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~-d~~~~~~~~~~~~h~~~~ 77 (147)
+|++.....|.||.....+ ++.+++. .|...|+.|.|+|..+.|++++.|..-++|.. +-.+-++...+.-|....
T Consensus 25 iAv~~~~~evhiy~~~~~~~w~~~htls-~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAA 103 (361)
T KOG1523|consen 25 IAVSPNNHEVHIYSMLGADLWEPAHTLS-EHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAA 103 (361)
T ss_pred EEeccCCceEEEEEecCCCCceeceehh-hhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccce
Confidence 4677778899999988764 2344443 45667999999999999999999999999443 222334444444343322
Q ss_pred --eEEeeccceeeeecCCC-cceeeeeeeeeee----ee-----eceEEEEEecCCCeEEEeCCCCcEEEeec
Q 032092 78 --ETCSVISFTSILAGDAP-KYSSFYKVKRLHL----FV-----KSHVIVLFVQIHHTFATAGSDGAFNFWDK 138 (147)
Q Consensus 78 --~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~----~~-----~~~~~~~fspdg~~latg~~Dg~i~iWd~ 138 (147)
..+++.+- +++.|+-+ .+-+.|......+ ++ ...++++|||.+-+||+|+.|+++|++..
T Consensus 104 t~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSa 175 (361)
T KOG1523|consen 104 TCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSA 175 (361)
T ss_pred eeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEE
Confidence 23555554 45554444 4444332222222 22 12357999999999999999999999864
No 210
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.62 E-value=6.9e-07 Score=77.67 Aligned_cols=144 Identities=17% Similarity=0.228 Sum_probs=78.8
Q ss_pred CeEeecCCeEEEEECCCCccc--e-e---EecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEE---
Q 032092 1 MVVGTADRNLVVFNLQNPQTE--F-K---RINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFK--- 71 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~--~-~---~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~--- 71 (147)
+++||.||+|++||.++-... . . ++ ++....+.++..-+.+++||+|+.||.|++..+|....+......
T Consensus 1064 FvsgS~DGtVKvW~~~k~~~~~~s~rS~lty-s~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri 1142 (1431)
T KOG1240|consen 1064 FVSGSDDGTVKVWNLRKLEGEGGSARSELTY-SPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRI 1142 (1431)
T ss_pred EEEecCCceEEEeeehhhhcCcceeeeeEEE-eccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeec
Confidence 489999999999999874321 1 1 11 122346888999999999999999999999555542221111000
Q ss_pred --eccCCc----eEEeeccce-eeeecCCCcceeeeeee--eeeeee---ec---eEEEEEecCCCeEEEeCCCCcEEEe
Q 032092 72 --CHRDGS----ETCSVISFT-SILAGDAPKYSSFYKVK--RLHLFV---KS---HVIVLFVQIHHTFATAGSDGAFNFW 136 (147)
Q Consensus 72 --~h~~~~----~~~~v~~~~-~~~~~~~~~~~~~~~~~--~~~~~~---~~---~~~~~fspdg~~latg~~Dg~i~iW 136 (147)
.+.... +++.-.... .+..+-+-.-.+.+... +..+.+ .. .++++.+|-+++++.|.+-|.+.+|
T Consensus 1143 ~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lW 1222 (1431)
T KOG1240|consen 1143 PNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLW 1222 (1431)
T ss_pred ccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEE
Confidence 010000 000000000 00000000000011100 001111 11 2578999999999999999999999
Q ss_pred ecCCceeee
Q 032092 137 DKDSKQRLK 145 (147)
Q Consensus 137 d~~~~~~~~ 145 (147)
|++=+..+.
T Consensus 1223 DLRF~~~i~ 1231 (1431)
T KOG1240|consen 1223 DLRFRVPIL 1231 (1431)
T ss_pred EeecCceee
Confidence 997555443
No 211
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=98.62 E-value=3.7e-07 Score=69.74 Aligned_cols=135 Identities=10% Similarity=0.140 Sum_probs=79.1
Q ss_pred eEeecCCeEEEEECCCCccceeEecC-CCC---cceEEEEEccCCCEEEEEeeCCeEEEEeecC-CCCcc--eeEEEecc
Q 032092 2 VVGTADRNLVVFNLQNPQTEFKRINS-PLK---YQMRCVAAFPDQQGFWVGSIEGRVGVHHLDD-SQQSK--NFTFKCHR 74 (147)
Q Consensus 2 ~~gs~dg~v~iwdi~~~~~~~~~~~~-~~~---~~i~~la~spdg~~l~~g~~dg~i~i~~~d~-~~~~~--~~~~~~h~ 74 (147)
|+.+.+.-|++||.-+++. ...+.. .+. ....||+|+|||++|.+|. ...|++ ||+ |.|+. .++-..|.
T Consensus 127 a~ssr~~PIh~wdaftG~l-raSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirv--Fdt~RpGr~c~vy~t~~~~ 202 (406)
T KOG2919|consen 127 AVSSRDQPIHLWDAFTGKL-RASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRV--FDTSRPGRDCPVYTTVTKG 202 (406)
T ss_pred eeccccCceeeeecccccc-ccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEE--eeccCCCCCCcchhhhhcc
Confidence 5567889999999999863 222210 111 1367999999999998876 478999 887 43432 22211121
Q ss_pred CCc-----e--EEeeccceeeeecCCCc-ceeeeeee-eeeeeeec----eEEEEEecCCCeEEEeCC-CCcEEEeecCC
Q 032092 75 DGS-----E--TCSVISFTSILAGDAPK-YSSFYKVK-RLHLFVKS----HVIVLFVQIHHTFATAGS-DGAFNFWDKDS 140 (147)
Q Consensus 75 ~~~-----~--~~~v~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~----~~~~~fspdg~~latg~~-Dg~i~iWd~~~ 140 (147)
..+ . ++.+....+.+.|+=.. +-++.... +....+.| ++.+.|+|||+.|.+|.. |-+|-.||++.
T Consensus 203 k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~ 282 (406)
T KOG2919|consen 203 KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRY 282 (406)
T ss_pred cccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehh
Confidence 111 1 11122222333343331 11222222 22333444 478999999999999887 77899999974
No 212
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.61 E-value=3.9e-07 Score=73.06 Aligned_cols=93 Identities=18% Similarity=0.116 Sum_probs=59.7
Q ss_pred CCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeC---CeEEEEeecCCCCcc--eeEEEeccCCceEEe
Q 032092 7 DRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIE---GRVGVHHLDDSQQSK--NFTFKCHRDGSETCS 81 (147)
Q Consensus 7 dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~d---g~i~i~~~d~~~~~~--~~~~~~h~~~~~~~~ 81 (147)
+..|.+||...... +.+. .+...+.+.+|||||+.++..+.+ ..|.+ ||+.+++. +..+.+|
T Consensus 183 ~~~i~i~d~dg~~~--~~lt-~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i--~dl~tg~~~~l~~~~g~-------- 249 (429)
T PRK01742 183 PYEVRVADYDGFNQ--FIVN-RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVV--HDLRSGARKVVASFRGH-------- 249 (429)
T ss_pred eEEEEEECCCCCCc--eEec-cCCCccccceEcCCCCEEEEEEecCCCcEEEE--EeCCCCceEEEecCCCc--------
Confidence 57899999876542 2333 234468999999999999987654 35777 67665533 1112221
Q ss_pred eccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeC-CCCcEEE--eecCCce
Q 032092 82 VISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAG-SDGAFNF--WDKDSKQ 142 (147)
Q Consensus 82 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~-~Dg~i~i--Wd~~~~~ 142 (147)
.... +|+|||+.|+.++ .||.+.| ||+.+++
T Consensus 250 ~~~~------------------------------~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~ 283 (429)
T PRK01742 250 NGAP------------------------------AFSPDGSRLAFASSKDGVLNIYVMGANGGT 283 (429)
T ss_pred cCce------------------------------eECCCCCEEEEEEecCCcEEEEEEECCCCC
Confidence 1123 9999998887764 5776555 4665554
No 213
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.57 E-value=1.6e-07 Score=80.59 Aligned_cols=108 Identities=14% Similarity=0.173 Sum_probs=75.4
Q ss_pred CeEeecCCeEEEEECCCC-ccceeEecCCCC-c-ceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCC-
Q 032092 1 MVVGTADRNLVVFNLQNP-QTEFKRINSPLK-Y-QMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDG- 76 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~-~~~~~~~~~~~~-~-~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~- 76 (147)
|++|+.||.|++||+|.. ...+-++..+-+ + .+++|..+++...+|+|+. +.|+| |++. |+.+..++-+...
T Consensus 1272 lvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikI--y~~~-G~~l~~~k~n~~F~ 1347 (1387)
T KOG1517|consen 1272 LVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKI--YSLS-GEQLNIIKYNPGFM 1347 (1387)
T ss_pred eeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEE--EecC-hhhhcccccCcccc
Confidence 689999999999999984 222222322211 2 3899999999999999998 99999 6654 4555444433211
Q ss_pred -ceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCce
Q 032092 77 -SETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQ 142 (147)
Q Consensus 77 -~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~ 142 (147)
....++.++ +|||-.-+||.|+.|.+|.||--.+.+
T Consensus 1348 ~q~~gs~scL------------------------------~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1348 GQRIGSVSCL------------------------------AFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred cCcCCCccee------------------------------eecchhHhhhhccCCceEEEeecCCcC
Confidence 011223333 999998899999999999999866543
No 214
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.57 E-value=2.6e-07 Score=49.02 Aligned_cols=34 Identities=21% Similarity=0.254 Sum_probs=29.1
Q ss_pred eEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEE
Q 032092 23 KRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVH 57 (147)
Q Consensus 23 ~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~ 57 (147)
..+. .|..+|++|+|+|++++|++|+.|++|++|
T Consensus 5 ~~~~-~h~~~i~~i~~~~~~~~~~s~~~D~~i~vw 38 (39)
T PF00400_consen 5 RTFR-GHSSSINSIAWSPDGNFLASGSSDGTIRVW 38 (39)
T ss_dssp EEEE-SSSSSEEEEEEETTSSEEEEEETTSEEEEE
T ss_pred EEEc-CCCCcEEEEEEecccccceeeCCCCEEEEE
Confidence 3443 466789999999999999999999999994
No 215
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.56 E-value=1.2e-05 Score=63.46 Aligned_cols=139 Identities=17% Similarity=0.074 Sum_probs=77.6
Q ss_pred eEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEe-eCCeEEEEeecCCCCcceeEEEeccCC----
Q 032092 2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGS-IEGRVGVHHLDDSQQSKNFTFKCHRDG---- 76 (147)
Q Consensus 2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~-~dg~i~i~~~d~~~~~~~~~~~~h~~~---- 76 (147)
.+++.||.|.++|+.+.+ .+.++... ...+.+++||||++++++. .++.+.+ +|.++.+.+.++......
T Consensus 52 yv~~rdg~vsviD~~~~~-~v~~i~~G--~~~~~i~~s~DG~~~~v~n~~~~~v~v--~D~~tle~v~~I~~~~~~~~~~ 126 (369)
T PF02239_consen 52 YVANRDGTVSVIDLATGK-VVATIKVG--GNPRGIAVSPDGKYVYVANYEPGTVSV--IDAETLEPVKTIPTGGMPVDGP 126 (369)
T ss_dssp EEEETTSEEEEEETTSSS-EEEEEE-S--SEEEEEEE--TTTEEEEEEEETTEEEE--EETTT--EEEEEE--EE-TTTS
T ss_pred EEEcCCCeEEEEECCccc-EEEEEecC--CCcceEEEcCCCCEEEEEecCCCceeE--eccccccceeeccccccccccc
Confidence 456789999999999986 45566432 3468999999999988664 6999999 898888777766532110
Q ss_pred -ceE----EeeccceeeeecCC-Ccceeee--eeeeee-eee---eceEEEEEecCCCeEEEe-CCCCcEEEeecCCcee
Q 032092 77 -SET----CSVISFTSILAGDA-PKYSSFY--KVKRLH-LFV---KSHVIVLFVQIHHTFATA-GSDGAFNFWDKDSKQR 143 (147)
Q Consensus 77 -~~~----~~v~~~~~~~~~~~-~~~~~~~--~~~~~~-~~~---~~~~~~~fspdg~~latg-~~Dg~i~iWd~~~~~~ 143 (147)
... .+...-..+..-.| +.++... +.+... ..+ ..-.-..|.|++++|+.+ ..+..|-++|.++++.
T Consensus 127 ~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~ 206 (369)
T PF02239_consen 127 ESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL 206 (369)
T ss_dssp ---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE
T ss_pred CCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceE
Confidence 000 00011111211111 1222221 111111 111 111236999999886554 5567899999999876
Q ss_pred ee
Q 032092 144 LK 145 (147)
Q Consensus 144 ~~ 145 (147)
+.
T Consensus 207 v~ 208 (369)
T PF02239_consen 207 VA 208 (369)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 216
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.55 E-value=1.5e-06 Score=66.11 Aligned_cols=58 Identities=14% Similarity=0.263 Sum_probs=46.2
Q ss_pred CeEeecCC-eEEEEECCCCccceeEecC-CCCcceEEEEEccCCCEEEEEeeCCeEEEEee
Q 032092 1 MVVGTADR-NLVVFNLQNPQTEFKRINS-PLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHL 59 (147)
Q Consensus 1 l~~gs~dg-~v~iwdi~~~~~~~~~~~~-~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~ 59 (147)
|||||..| .|||||..+++.. ..+.. .....|.+|+||||+.+||++|..|+++|+.+
T Consensus 196 vATaStkGTLIRIFdt~~g~~l-~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l 255 (346)
T KOG2111|consen 196 VATASTKGTLIRIFDTEDGTLL-QELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSL 255 (346)
T ss_pred EEEeccCcEEEEEEEcCCCcEe-eeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEe
Confidence 58999988 4699999999753 33332 23346999999999999999999999999443
No 217
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.53 E-value=2.1e-07 Score=73.82 Aligned_cols=64 Identities=9% Similarity=0.122 Sum_probs=51.3
Q ss_pred EeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEE
Q 032092 3 VGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTF 70 (147)
Q Consensus 3 ~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~ 70 (147)
+|...|+|.+|.-...+-+++.+ .|..+|++||+.|+|+++|+.+.|..++| ||+|....+.++
T Consensus 268 ~GhsnGtVSlWSP~skePLvKiL--cH~g~V~siAv~~~G~YMaTtG~Dr~~kI--WDlR~~~ql~t~ 331 (545)
T KOG1272|consen 268 LGHSNGTVSLWSPNSKEPLVKIL--CHRGPVSSIAVDRGGRYMATTGLDRKVKI--WDLRNFYQLHTY 331 (545)
T ss_pred EcCCCceEEecCCCCcchHHHHH--hcCCCcceEEECCCCcEEeecccccceeE--eeecccccccee
Confidence 67889999999998876444433 25678999999999999999999999999 787765544443
No 218
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.52 E-value=7.2e-07 Score=72.45 Aligned_cols=116 Identities=16% Similarity=0.156 Sum_probs=78.5
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC 80 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~ 80 (147)
|..++....|+-+|+.+|.-+ ..+.. ....++++.++|....|++|+.+|.+.. ||++......++..-..
T Consensus 148 ly~~gsg~evYRlNLEqGrfL-~P~~~-~~~~lN~v~in~~hgLla~Gt~~g~VEf--wDpR~ksrv~~l~~~~~----- 218 (703)
T KOG2321|consen 148 LYLVGSGSEVYRLNLEQGRFL-NPFET-DSGELNVVSINEEHGLLACGTEDGVVEF--WDPRDKSRVGTLDAASS----- 218 (703)
T ss_pred EEEeecCcceEEEEccccccc-ccccc-ccccceeeeecCccceEEecccCceEEE--ecchhhhhheeeecccc-----
Confidence 345666778999999988521 11211 1246899999999999999999999998 89886555444432111
Q ss_pred eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceee
Q 032092 81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRL 144 (147)
Q Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~ 144 (147)
|++. .|.+ ..+..++++|+-+|-.++.|.++|.|.|+|++..+.+
T Consensus 219 -v~s~----pg~~--------------~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl 263 (703)
T KOG2321|consen 219 -VNSH----PGGD--------------AAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPL 263 (703)
T ss_pred -cCCC----cccc--------------ccCcceEEEecCCceeEEeeccCCcEEEEEcccCCce
Confidence 1110 0000 0111234499999999999999999999999987665
No 219
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.51 E-value=3.4e-07 Score=74.09 Aligned_cols=75 Identities=20% Similarity=0.222 Sum_probs=59.1
Q ss_pred CCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEE-EeccCCceEEeeccceeeeecCCCcceeeeeeeeeee
Q 032092 29 LKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTF-KCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHL 107 (147)
Q Consensus 29 ~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~-~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (147)
|.+=|++|+|+.||..|++|+.|-.+.| ||+...+++..+ ++|.. .+-+.
T Consensus 49 H~GCVN~LeWn~dG~lL~SGSDD~r~iv--Wd~~~~KllhsI~TgHta-----NIFsv---------------------- 99 (758)
T KOG1310|consen 49 HTGCVNCLEWNADGELLASGSDDTRLIV--WDPFEYKLLHSISTGHTA-----NIFSV---------------------- 99 (758)
T ss_pred ccceecceeecCCCCEEeecCCcceEEe--ecchhcceeeeeeccccc-----ceeEE----------------------
Confidence 4455999999999999999999999999 888766665444 34543 23333
Q ss_pred eeeceEEEEEecC--CCeEEEeCCCCcEEEeecCC
Q 032092 108 FVKSHVIVLFVQI--HHTFATAGSDGAFNFWDKDS 140 (147)
Q Consensus 108 ~~~~~~~~~fspd--g~~latg~~Dg~i~iWd~~~ 140 (147)
.|-|- .+.++||.+|..|+++|+..
T Consensus 100 --------KFvP~tnnriv~sgAgDk~i~lfdl~~ 126 (758)
T KOG1310|consen 100 --------KFVPYTNNRIVLSGAGDKLIKLFDLDS 126 (758)
T ss_pred --------eeeccCCCeEEEeccCcceEEEEeccc
Confidence 88883 37899999999999999974
No 220
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.51 E-value=4.9e-07 Score=67.41 Aligned_cols=110 Identities=15% Similarity=0.165 Sum_probs=75.3
Q ss_pred CeEeecCCeEEEEECCCCcccee-----Ee---cCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeE-EE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFK-----RI---NSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFT-FK 71 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~-----~~---~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~-~~ 71 (147)
|++|-++|.|.+||+.++.+.+. .. ...++.+|.++.+.+.-+.=++|+.+..+..|.++-.++..... +.
T Consensus 168 llaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~ 247 (323)
T KOG0322|consen 168 LLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEI 247 (323)
T ss_pred EEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceE
Confidence 46788899999999999743111 00 11245679999998876666888888888886666554432211 10
Q ss_pred eccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceee
Q 032092 72 CHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRL 144 (147)
Q Consensus 72 ~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~ 144 (147)
.-++. .+..+ ..-||++.|||+|=|+.||||.-++.+.+
T Consensus 248 ~lknp----Gv~gv------------------------------rIRpD~KIlATAGWD~RiRVyswrtl~pL 286 (323)
T KOG0322|consen 248 TLKNP----GVSGV------------------------------RIRPDGKILATAGWDHRIRVYSWRTLNPL 286 (323)
T ss_pred EecCC----Cccce------------------------------EEccCCcEEeecccCCcEEEEEeccCCch
Confidence 00110 13333 89999999999999999999999988765
No 221
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.48 E-value=2e-06 Score=62.09 Aligned_cols=84 Identities=12% Similarity=0.128 Sum_probs=54.6
Q ss_pred eEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEee---CCeEEEEeecCCCCcceeEEEeccCCce
Q 032092 2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSI---EGRVGVHHLDDSQQSKNFTFKCHRDGSE 78 (147)
Q Consensus 2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~---dg~i~i~~~d~~~~~~~~~~~~h~~~~~ 78 (147)
++|..++.|.+||++ ++ ++..+. ..+++.|.|||+|+++++|+. .|.+.+ ||.++.+.+.++........
T Consensus 77 i~g~~~~~v~lyd~~-~~-~i~~~~---~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~--wd~~~~~~i~~~~~~~~t~~ 149 (194)
T PF08662_consen 77 IYGSMPAKVTLYDVK-GK-KIFSFG---TQPRNTISWSPDGRFLVLAGFGNLNGDLEF--WDVRKKKKISTFEHSDATDV 149 (194)
T ss_pred EEccCCcccEEEcCc-cc-EeEeec---CCCceEEEECCCCCEEEEEEccCCCcEEEE--EECCCCEEeeccccCcEEEE
Confidence 345567899999997 33 333332 246789999999999998864 467999 77776666655542221223
Q ss_pred EEeeccceeeeecC
Q 032092 79 TCSVISFTSILAGD 92 (147)
Q Consensus 79 ~~~v~~~~~~~~~~ 92 (147)
.++++.-.++++..
T Consensus 150 ~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 150 EWSPDGRYLATATT 163 (194)
T ss_pred EEcCCCCEEEEEEe
Confidence 56666655555544
No 222
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.47 E-value=2.1e-06 Score=69.42 Aligned_cols=90 Identities=13% Similarity=0.024 Sum_probs=56.7
Q ss_pred cceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeeccc-----eeeeecCCCcceeeeeeeee
Q 032092 31 YQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISF-----TSILAGDAPKYSSFYKVKRL 105 (147)
Q Consensus 31 ~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~-----~~~~~~~~~~~~~~~~~~~~ 105 (147)
+-|.++.|+|..+.+++|+.|-+.+| ||.. |+.+++-..|. ++++++ ...+.|+-. ..|.
T Consensus 187 GiiL~~~W~~~s~lI~sgGED~kfKv--WD~~-G~~Lf~S~~~e-----y~ITSva~npd~~~~v~S~n-------t~R~ 251 (737)
T KOG1524|consen 187 GLVLSLSWSTQSNIIASGGEDFRFKI--WDAQ-GANLFTSAAEE-----YAITSVAFNPEKDYLLWSYN-------TARF 251 (737)
T ss_pred cEEEEeecCccccceeecCCceeEEe--eccc-CcccccCChhc-----cceeeeeeccccceeeeeee-------eeee
Confidence 34788889999999999999999998 7764 66665443333 344433 112222211 1121
Q ss_pred ee-eeeceEEEEEecCCCeEEEeCCCCcEEE
Q 032092 106 HL-FVKSHVIVLFVQIHHTFATAGSDGAFNF 135 (147)
Q Consensus 106 ~~-~~~~~~~~~fspdg~~latg~~Dg~i~i 135 (147)
.. ..-..+.++|||||..++.|.+.|.+.+
T Consensus 252 ~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 252 SSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred cCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 11 1122456899999999999999997654
No 223
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.44 E-value=2.7e-07 Score=77.58 Aligned_cols=54 Identities=13% Similarity=0.197 Sum_probs=44.4
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeec
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLD 60 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d 60 (147)
+|++|.|..|++|-++.+. |+..+. +|.+.|++|+|+|-. +.+.||++++|||+
T Consensus 247 iaaaS~D~vIrvWrl~~~~-pvsvLr-ghtgavtaiafsP~~----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 247 IAAASNDKVIRVWRLPDGA-PVSVLR-GHTGAVTAIAFSPRA----SSSDDGTCRIWDAR 300 (1113)
T ss_pred hhhcccCceEEEEecCCCc-hHHHHh-ccccceeeeccCccc----cCCCCCceEecccc
Confidence 4678999999999999985 555443 567789999999954 77899999997776
No 224
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.44 E-value=9.1e-07 Score=72.87 Aligned_cols=98 Identities=13% Similarity=0.117 Sum_probs=67.3
Q ss_pred ecCCeEEEEECCCCccceeEecCCCCcceEEEEEccC-CCEEEEEeeCCeEEEEeecCCC--CcceeEEEeccCCceEEe
Q 032092 5 TADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPD-QQGFWVGSIEGRVGVHHLDDSQ--QSKNFTFKCHRDGSETCS 81 (147)
Q Consensus 5 s~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spd-g~~l~~g~~dg~i~i~~~d~~~--~~~~~~~~~h~~~~~~~~ 81 (147)
+.|-+|+||.-.-...|....... ...+.++||||- ...|+++..||.+.| ||+.. ..+..+.+-+. ..
T Consensus 417 ~gDW~vriWs~~~~~~Pl~~~~~~-~~~v~~vaWSptrpavF~~~d~~G~l~i--WDLl~~~~~Pv~s~~~~~-----~~ 488 (555)
T KOG1587|consen 417 VGDWTVRIWSEDVIASPLLSLDSS-PDYVTDVAWSPTRPAVFATVDGDGNLDI--WDLLQDDEEPVLSQKVCS-----PA 488 (555)
T ss_pred eccceeEeccccCCCCcchhhhhc-cceeeeeEEcCcCceEEEEEcCCCceeh--hhhhccccCCcccccccc-----cc
Confidence 339999999987434454433322 235999999996 568999999999999 55542 23332222111 01
Q ss_pred eccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCC
Q 032092 82 VISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDS 140 (147)
Q Consensus 82 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~ 140 (147)
.+. +.|+|.|+.|+.|...|++++|++.+
T Consensus 489 l~~------------------------------~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 489 LTR------------------------------VRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cce------------------------------eecCCCCcEEEEecCCCcEEEEEcCc
Confidence 122 27888999999999999999999853
No 225
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=98.44 E-value=1.3e-06 Score=70.46 Aligned_cols=76 Identities=17% Similarity=0.279 Sum_probs=52.8
Q ss_pred eEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeece
Q 032092 33 MRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSH 112 (147)
Q Consensus 33 i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (147)
+.-+..+|.+....++..|+.|++ +|..+++++.....|.. .++++
T Consensus 492 in~vVs~~~~~~~~~~hed~~Ir~--~dn~~~~~l~s~~a~~~-----svtsl--------------------------- 537 (577)
T KOG0642|consen 492 INKVVSHPTADITFTAHEDRSIRF--FDNKTGKILHSMVAHKD-----SVTSL--------------------------- 537 (577)
T ss_pred cceEEecCCCCeeEecccCCceec--ccccccccchheeeccc-----eecce---------------------------
Confidence 344555555556666666666666 55555555555554543 24444
Q ss_pred EEEEEecCCCeEEEeCCCCcEEEeecCCceeee
Q 032092 113 VIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLK 145 (147)
Q Consensus 113 ~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~ 145 (147)
++-|.|.+|++|+.|+.+++|.+..+.++.
T Consensus 538 ---ai~~ng~~l~s~s~d~sv~l~kld~k~~~~ 567 (577)
T KOG0642|consen 538 ---AIDPNGPYLMSGSHDGSVRLWKLDVKTCVL 567 (577)
T ss_pred ---eecCCCceEEeecCCceeehhhccchheee
Confidence 999999999999999999999998777654
No 226
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.43 E-value=1.9e-06 Score=66.74 Aligned_cols=100 Identities=12% Similarity=0.170 Sum_probs=63.4
Q ss_pred CeEeecCCeEEEEECCCCc---cc--------eeEecCCCCcceEEEEEccCCCEEEEEee-CCeEEEEeecCCCCccee
Q 032092 1 MVVGTADRNLVVFNLQNPQ---TE--------FKRINSPLKYQMRCVAAFPDQQGFWVGSI-EGRVGVHHLDDSQQSKNF 68 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~---~~--------~~~~~~~~~~~i~~la~spdg~~l~~g~~-dg~i~i~~~d~~~~~~~~ 68 (147)
|++|+..| |.||.....- .+ .+....+...+|++|+|.+||..+++++- |..|+| ||+.++..+.
T Consensus 156 lavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~i--Wdpdtg~~~p 232 (445)
T KOG2139|consen 156 LAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMI--WDPDTGQKIP 232 (445)
T ss_pred eeeeecce-eEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEE--EcCCCCCccc
Confidence 46666644 8899864321 11 01112222357999999999999998765 677999 6665544321
Q ss_pred EEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeec
Q 032092 69 TFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDK 138 (147)
Q Consensus 69 ~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~ 138 (147)
+.--... .+.- +.|||||.+|.++.-|+..++|+.
T Consensus 233 -L~~~glg----g~sl------------------------------LkwSPdgd~lfaAt~davfrlw~e 267 (445)
T KOG2139|consen 233 -LIPKGLG----GFSL------------------------------LKWSPDGDVLFAATCDAVFRLWQE 267 (445)
T ss_pred -ccccCCC----ceee------------------------------EEEcCCCCEEEEecccceeeeehh
Confidence 1100000 1222 399999999999999999999953
No 227
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=7.9e-06 Score=66.10 Aligned_cols=130 Identities=17% Similarity=0.177 Sum_probs=80.4
Q ss_pred CeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEE--EeeCCeEEEEeecCCCCcceeEEE-eccCCceEEeecc
Q 032092 8 RNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWV--GSIEGRVGVHHLDDSQQSKNFTFK-CHRDGSETCSVIS 84 (147)
Q Consensus 8 g~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~--g~~dg~i~i~~~d~~~~~~~~~~~-~h~~~~~~~~v~~ 84 (147)
.++++.+++.....+ .-...+||.++.|+|+|+-|++ |-+=-.+.| +|.+ +..++.|. +-++. ..+....
T Consensus 251 q~Lyll~t~g~s~~V---~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvti--fnlr-~~~v~df~egpRN~-~~fnp~g 323 (566)
T KOG2315|consen 251 QTLYLLATQGESVSV---PLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTI--FNLR-GKPVFDFPEGPRNT-AFFNPHG 323 (566)
T ss_pred ceEEEEEecCceEEE---ecCCCCCceEEEECCCCCEEEEEEecccceEEE--EcCC-CCEeEeCCCCCccc-eEECCCC
Confidence 467778887332222 1123468999999999987764 677788888 7775 66666663 33332 2333444
Q ss_pred ceeeeecCCC--c-ceeeeeee-eeeeeeece--EEEEEecCCCeEEEeCC------CCcEEEeecCCceeee
Q 032092 85 FTSILAGDAP--K-YSSFYKVK-RLHLFVKSH--VIVLFVQIHHTFATAGS------DGAFNFWDKDSKQRLK 145 (147)
Q Consensus 85 ~~~~~~~~~~--~-~~~~~~~~-~~~~~~~~~--~~~~fspdg~~latg~~------Dg~i~iWd~~~~~~~~ 145 (147)
-.++++|-.. + +.+|+-.+ +....+.+- +-+.|+|||++|.|+.. |..++||+. +|++++
T Consensus 324 ~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~ 395 (566)
T KOG2315|consen 324 NIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLH 395 (566)
T ss_pred CEEEEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCceee
Confidence 3455554443 3 44444222 222233222 34799999999999876 788999997 555554
No 228
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.41 E-value=1.4e-05 Score=63.32 Aligned_cols=131 Identities=14% Similarity=0.075 Sum_probs=71.8
Q ss_pred CeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEE-EeeCCeEEEEeecCCCCcceeEEEeccCC--ceEEeecc
Q 032092 8 RNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWV-GSIEGRVGVHHLDDSQQSKNFTFKCHRDG--SETCSVIS 84 (147)
Q Consensus 8 g~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~-g~~dg~i~i~~~d~~~~~~~~~~~~h~~~--~~~~~v~~ 84 (147)
..|++||+.+++. ..+.. ....+.+++|+|||+.|+. .+.++...||.+|..++.. ..+..+... ...+..+.
T Consensus 214 ~~i~v~d~~~g~~--~~~~~-~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg 289 (417)
T TIGR02800 214 PEIYVQDLATGQR--EKVAS-FPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDG 289 (417)
T ss_pred cEEEEEECCCCCE--EEeec-CCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCC
Confidence 4799999998743 12221 2234667899999998764 4555654444477765433 233333211 12333333
Q ss_pred ceeeeecCCCcc-eeee-eeee--e-eeeeec--eEEEEEecCCCeEEEeCCCC---cEEEeecCCce
Q 032092 85 FTSILAGDAPKY-SSFY-KVKR--L-HLFVKS--HVIVLFVQIHHTFATAGSDG---AFNFWDKDSKQ 142 (147)
Q Consensus 85 ~~~~~~~~~~~~-~~~~-~~~~--~-~~~~~~--~~~~~fspdg~~latg~~Dg---~i~iWd~~~~~ 142 (147)
-.++..+..... .++. ++.. . .....+ ...++|+|||++|+.++.++ .|.+||+.++.
T Consensus 290 ~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~ 357 (417)
T TIGR02800 290 KSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG 357 (417)
T ss_pred CEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCC
Confidence 333333333221 2211 2211 1 111122 24679999999888887776 79999987753
No 229
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.39 E-value=9.5e-07 Score=71.77 Aligned_cols=106 Identities=12% Similarity=0.191 Sum_probs=74.3
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCC-----C-----CcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSP-----L-----KYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTF 70 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~-----~-----~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~ 70 (147)
|++|+.+|.|..||.|..+. +.++..+ + ...|++++|+.||-.+++|+.+|.+.| +|+++.+++. .
T Consensus 190 la~Gt~~g~VEfwDpR~ksr-v~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~i--yDLRa~~pl~-~ 265 (703)
T KOG2321|consen 190 LACGTEDGVVEFWDPRDKSR-VGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLI--YDLRASKPLL-V 265 (703)
T ss_pred EEecccCceEEEecchhhhh-heeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEE--EEcccCCcee-e
Confidence 57788899999999998643 2222211 1 123899999999999999999999999 7887666643 2
Q ss_pred EeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecC--CCeEEEeCCCCcEEEeecCCceee
Q 032092 71 KCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQI--HHTFATAGSDGAFNFWDKDSKQRL 144 (147)
Q Consensus 71 ~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspd--g~~latg~~Dg~i~iWd~~~~~~~ 144 (147)
+.|... .++..+ .|-+. ++.++|.. ...++|||-.+++..
T Consensus 266 kdh~~e---~pi~~l------------------------------~~~~~~~q~~v~S~D-k~~~kiWd~~~Gk~~ 307 (703)
T KOG2321|consen 266 KDHGYE---LPIKKL------------------------------DWQDTDQQNKVVSMD-KRILKIWDECTGKPM 307 (703)
T ss_pred cccCCc---cceeee------------------------------cccccCCCceEEecc-hHHhhhcccccCCce
Confidence 345432 345444 78775 46677642 357899999888764
No 230
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.37 E-value=1e-05 Score=64.78 Aligned_cols=104 Identities=23% Similarity=0.256 Sum_probs=76.2
Q ss_pred CeEeecCC-eEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceE
Q 032092 1 MVVGTADR-NLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSET 79 (147)
Q Consensus 1 l~~gs~dg-~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~ 79 (147)
++.|..|| .+-|||.++++ +++++.+. ..|.+++.+|||+.++++.....+.+ +|+.+++....-+ ...
T Consensus 374 ~vigt~dgD~l~iyd~~~~e--~kr~e~~l-g~I~av~vs~dGK~~vvaNdr~el~v--ididngnv~~idk-----S~~ 443 (668)
T COG4946 374 DVIGTNDGDKLGIYDKDGGE--VKRIEKDL-GNIEAVKVSPDGKKVVVANDRFELWV--IDIDNGNVRLIDK-----SEY 443 (668)
T ss_pred eEEeccCCceEEEEecCCce--EEEeeCCc-cceEEEEEcCCCcEEEEEcCceEEEE--EEecCCCeeEecc-----ccc
Confidence 46788899 99999999985 34555433 46999999999999999998877766 7776665432111 111
Q ss_pred EeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCC----cEEEeecCCceee
Q 032092 80 CSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDG----AFNFWDKDSKQRL 144 (147)
Q Consensus 80 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg----~i~iWd~~~~~~~ 144 (147)
.-+... +|||++++||-+--+| .|+++|+..++..
T Consensus 444 ~lItdf------------------------------~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy 482 (668)
T COG4946 444 GLITDF------------------------------DWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIY 482 (668)
T ss_pred ceeEEE------------------------------EEcCCceeEEEecCcceeeeeEEEEecCCCeEE
Confidence 123344 9999999999887665 7999999887754
No 231
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.37 E-value=8.2e-06 Score=62.76 Aligned_cols=140 Identities=13% Similarity=0.137 Sum_probs=79.1
Q ss_pred EeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCE-EEEEeeCCeEEEEeecCCCCccee-------EEEecc
Q 032092 3 VGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQG-FWVGSIEGRVGVHHLDDSQQSKNF-------TFKCHR 74 (147)
Q Consensus 3 ~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~-l~~g~~dg~i~i~~~d~~~~~~~~-------~~~~h~ 74 (147)
.+..++.|++|++.+++= .-.++. ...++.++.|||||+. |.+..-|-+|.+|......+-.+. .+.-|+
T Consensus 66 ~~yk~~~vqvwsl~Qpew-~ckIde-g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~ 143 (447)
T KOG4497|consen 66 VAYKDPKVQVWSLVQPEW-YCKIDE-GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHP 143 (447)
T ss_pred eeeccceEEEEEeeccee-EEEecc-CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECC
Confidence 456789999999998753 223443 2346899999999965 556677999999766654321111 111122
Q ss_pred CCce-------------------------EEeecccee--eeecCCCcceeee--eeeeeee--e-eeceEEEEEecCCC
Q 032092 75 DGSE-------------------------TCSVISFTS--ILAGDAPKYSSFY--KVKRLHL--F-VKSHVIVLFVQIHH 122 (147)
Q Consensus 75 ~~~~-------------------------~~~v~~~~~--~~~~~~~~~~~~~--~~~~~~~--~-~~~~~~~~fspdg~ 122 (147)
.... .+.+..+++ +-.+.|+.....+ .|+.... . .-|...++|+|.++
T Consensus 144 dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~q 223 (447)
T KOG4497|consen 144 DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQ 223 (447)
T ss_pred CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccc
Confidence 1100 001111100 2223333222222 1221111 1 13455689999999
Q ss_pred eEEEeCCCCcEEEeecCCceee
Q 032092 123 TFATAGSDGAFNFWDKDSKQRL 144 (147)
Q Consensus 123 ~latg~~Dg~i~iWd~~~~~~~ 144 (147)
+||.|++|+.+|+-|--+-+.+
T Consensus 224 flavGsyD~~lrvlnh~tWk~f 245 (447)
T KOG4497|consen 224 FLAVGSYDQMLRVLNHFTWKPF 245 (447)
T ss_pred eEEeeccchhhhhhceeeeeeh
Confidence 9999999999999876554443
No 232
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.34 E-value=7.5e-06 Score=65.72 Aligned_cols=97 Identities=10% Similarity=0.050 Sum_probs=62.0
Q ss_pred CCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEE-EEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeeccc
Q 032092 7 DRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFW-VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISF 85 (147)
Q Consensus 7 dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~-~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~ 85 (147)
+..|.+||+.+++. ..+. .....+.+.+|||||+.|+ +.+.+|...||.+|..++.. ..+..+.. ...+.
T Consensus 225 ~~~i~~~dl~~g~~--~~l~-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~-----~~~~~ 295 (435)
T PRK05137 225 RPRVYLLDLETGQR--ELVG-NFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPA-----IDTSP 295 (435)
T ss_pred CCEEEEEECCCCcE--EEee-cCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCC-----ccCce
Confidence 46899999998753 2232 2233567889999999876 55667776666578765433 33433221 12223
Q ss_pred eeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCC-CC--cEEEeecCCce
Q 032092 86 TSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGS-DG--AFNFWDKDSKQ 142 (147)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~-Dg--~i~iWd~~~~~ 142 (147)
+|+|||+.|+..+. +| .|++||+.+++
T Consensus 296 ------------------------------~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~ 325 (435)
T PRK05137 296 ------------------------------SYSPDGSQIVFESDRSGSPQLYVMNADGSN 325 (435)
T ss_pred ------------------------------eEcCCCCEEEEEECCCCCCeEEEEECCCCC
Confidence 89999987776553 33 68888876653
No 233
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.34 E-value=1.2e-05 Score=64.46 Aligned_cols=101 Identities=15% Similarity=0.073 Sum_probs=61.7
Q ss_pred eecCC--eEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEee-CCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092 4 GTADR--NLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSI-EGRVGVHHLDDSQQSKNFTFKCHRDGSETC 80 (147)
Q Consensus 4 gs~dg--~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~-dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~ 80 (147)
.+.+| .|++||+.+++. ..+.. +.....+.+|+|||+.|+..+. +|...||.+|..+++. ..+..+..
T Consensus 266 ~s~~g~~~Iy~~d~~~g~~--~~lt~-~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~-~~lt~~g~----- 336 (433)
T PRK04922 266 LSRDGNPEIYVMDLGSRQL--TRLTN-HFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA-ERLTFQGN----- 336 (433)
T ss_pred EeCCCCceEEEEECCCCCe--EECcc-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEeecCCC-----
Confidence 34444 699999988753 23322 2223467899999999887664 5665565577654432 22221111
Q ss_pred eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCC---cEEEeecCCcee
Q 032092 81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDG---AFNFWDKDSKQR 143 (147)
Q Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg---~i~iWd~~~~~~ 143 (147)
..... +|||||+.|+..+.++ .|.+||+.+++.
T Consensus 337 ~~~~~------------------------------~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~ 372 (433)
T PRK04922 337 YNARA------------------------------SVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV 372 (433)
T ss_pred CccCE------------------------------EECCCCCEEEEEECCCCceeEEEEECCCCCe
Confidence 01123 9999998887654433 699999977654
No 234
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.34 E-value=1.4e-05 Score=64.12 Aligned_cols=95 Identities=13% Similarity=0.049 Sum_probs=61.0
Q ss_pred CeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEee---CCeEEEEeecCCCCcceeEEEeccCCceEEeecc
Q 032092 8 RNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSI---EGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVIS 84 (147)
Q Consensus 8 g~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~---dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~ 84 (147)
..|.++|..... + +.+. .+...+.+.+|||||+.|+..+. +..|.+ ||+.+++. ..+..+.. .+..
T Consensus 182 ~~l~~~d~dg~~-~-~~lt-~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~--~dl~~g~~-~~l~~~~g-----~~~~ 250 (435)
T PRK05137 182 KRLAIMDQDGAN-V-RYLT-DGSSLVLTPRFSPNRQEITYMSYANGRPRVYL--LDLETGQR-ELVGNFPG-----MTFA 250 (435)
T ss_pred eEEEEECCCCCC-c-EEEe-cCCCCeEeeEECCCCCEEEEEEecCCCCEEEE--EECCCCcE-EEeecCCC-----cccC
Confidence 478899986543 2 2333 23457899999999999887664 356777 77765543 22332221 1223
Q ss_pred ceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEE-EeCCCCc--EEEeecCCcee
Q 032092 85 FTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFA-TAGSDGA--FNFWDKDSKQR 143 (147)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~la-tg~~Dg~--i~iWd~~~~~~ 143 (147)
. +|+|||+.|+ +.+.++. |++||+++++.
T Consensus 251 ~------------------------------~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~ 282 (435)
T PRK05137 251 P------------------------------RFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT 282 (435)
T ss_pred c------------------------------EECCCCCEEEEEEecCCCceEEEEECCCCce
Confidence 3 9999997665 5555554 88889877654
No 235
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.32 E-value=1e-05 Score=64.98 Aligned_cols=57 Identities=19% Similarity=0.199 Sum_probs=36.4
Q ss_pred CCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEE-eeCCeEEEEeecCCCCcc
Q 032092 7 DRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVG-SIEGRVGVHHLDDSQQSK 66 (147)
Q Consensus 7 dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g-~~dg~i~i~~~d~~~~~~ 66 (147)
+..|.+||+.+++. ..+.. ....+.+.+|||||+.|+.. +.+|...||-||..+++.
T Consensus 222 ~~~i~i~dl~~G~~--~~l~~-~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~ 279 (429)
T PRK03629 222 RSALVIQTLANGAV--RQVAS-FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI 279 (429)
T ss_pred CcEEEEEECCCCCe--EEccC-CCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCE
Confidence 45799999988753 22221 12235678999999988864 456654444478765543
No 236
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.32 E-value=4.4e-06 Score=67.66 Aligned_cols=69 Identities=19% Similarity=0.160 Sum_probs=55.1
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccC
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRD 75 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~ 75 (147)
|-+++.|+.+..|+.+..+. +.... ..+..+.+++++|||+.+++++ ++|.+ ||..+.+.+.+|+||..
T Consensus 117 iyS~~ad~~v~~~~~~~~~~-~~~~~-~~~~~~~sl~is~D~~~l~~as--~~ik~--~~~~~kevv~~ftgh~s 185 (541)
T KOG4547|consen 117 IYSVGADLKVVYILEKEKVI-IRIWK-EQKPLVSSLCISPDGKILLTAS--RQIKV--LDIETKEVVITFTGHGS 185 (541)
T ss_pred eEecCCceeEEEEeccccee-eeeec-cCCCccceEEEcCCCCEEEecc--ceEEE--EEccCceEEEEecCCCc
Confidence 35788999999999998742 22222 2233578999999999999988 78999 88888999999999986
No 237
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.30 E-value=1.6e-05 Score=63.84 Aligned_cols=96 Identities=16% Similarity=0.072 Sum_probs=61.3
Q ss_pred eEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEee-CCeEEEEeecCCCCcceeEEEeccCCceEEeecccee
Q 032092 9 NLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSI-EGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFTS 87 (147)
Q Consensus 9 ~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~-dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~~~ 87 (147)
.|++||+.+++. ..+.. ....+...+|+|||+.|+..+. +|...||.+|...+.. ..+..+.. .....
T Consensus 268 ~I~~~d~~tg~~--~~lt~-~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~-----~~~~~-- 336 (429)
T PRK03629 268 NLYVMDLASGQI--RQVTD-GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGS-----QNQDA-- 336 (429)
T ss_pred EEEEEECCCCCE--EEccC-CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCC-----CccCE--
Confidence 588999988742 23332 2234678999999999887665 4566776677765432 22321111 11223
Q ss_pred eeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCC---CcEEEeecCCcee
Q 032092 88 ILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSD---GAFNFWDKDSKQR 143 (147)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~D---g~i~iWd~~~~~~ 143 (147)
+|+|||++|+..+.+ ..|.+||+++++.
T Consensus 337 ----------------------------~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~ 367 (429)
T PRK03629 337 ----------------------------DVSSDGKFMVMVSSNGGQQHIAKQDLATGGV 367 (429)
T ss_pred ----------------------------EECCCCCEEEEEEccCCCceEEEEECCCCCe
Confidence 899999888776543 3588999887653
No 238
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.27 E-value=6.5e-07 Score=80.31 Aligned_cols=95 Identities=21% Similarity=0.330 Sum_probs=72.6
Q ss_pred ecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeecc
Q 032092 5 TADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVIS 84 (147)
Q Consensus 5 s~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~ 84 (147)
++++.+.+||..-.... ..+...|...++++++-|..+.|++|+.+|.|.+ ||+++.+...+++
T Consensus 2312 ~d~~n~~lwDtl~~~~~-s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l--~D~rqrql~h~~~------------- 2375 (2439)
T KOG1064|consen 2312 SDNRNVCLWDTLLPPMN-SLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCL--FDIRQRQLRHTFQ------------- 2375 (2439)
T ss_pred CCCCcccchhcccCccc-ceeeeecCCCceEEEEcCcceEEEecCCcCcEEE--eehHHHHHHHHhh-------------
Confidence 56789999997653221 1122345567999999999999999999999999 8888666654443
Q ss_pred ceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092 85 FTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF 147 (147)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~ 147 (147)
++. ...+|.+|++.|.|+||++.+..++++|
T Consensus 2376 -------------------------------~~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2376 -------------------------------ALD-TREYFVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred -------------------------------hhh-hhheeeccCcccceEEEEccccchhhcC
Confidence 222 3368999999999999999998888876
No 239
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.24 E-value=8e-06 Score=69.91 Aligned_cols=106 Identities=18% Similarity=0.261 Sum_probs=75.9
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCc---ceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCc
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKY---QMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGS 77 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~---~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~ 77 (147)
++.++.++.+-|||....... ..+....+. +..-+.++++.-++++|+.-|.|.+|.+.. +..+ ..+.+|..
T Consensus 102 i~l~~~~ns~~i~d~~~~~~~-~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~-dn~p-~~l~GHeG-- 176 (967)
T KOG0974|consen 102 IALVTSRNSLLIRDSKNSSVL-SKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHE-DNKP-IRLKGHEG-- 176 (967)
T ss_pred EEEEEcCceEEEEecccCcee-hhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccc-cCCc-ceecccCC--
Confidence 467788899999999987532 223222222 233355688888999999999999965552 2223 25677765
Q ss_pred eEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceee
Q 032092 78 ETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRL 144 (147)
Q Consensus 78 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~ 144 (147)
.+-++ .|+-||++++|.|.|.++|+|++++++.+
T Consensus 177 ---~iF~i------------------------------~~s~dg~~i~s~SdDRsiRlW~i~s~~~~ 210 (967)
T KOG0974|consen 177 ---SIFSI------------------------------VTSLDGRYIASVSDDRSIRLWPIDSREVL 210 (967)
T ss_pred ---ceEEE------------------------------EEccCCcEEEEEecCcceeeeeccccccc
Confidence 23344 99999999999999999999999988754
No 240
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.22 E-value=8.5e-06 Score=68.60 Aligned_cols=102 Identities=13% Similarity=0.158 Sum_probs=69.6
Q ss_pred CeEeecCCeEEEEECCC--CccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCce
Q 032092 1 MVVGTADRNLVVFNLQN--PQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE 78 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~--~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~ 78 (147)
+|+|..||.|.+|.--. ......+.-.=|..+|.+++|++||.+|.+|+.+|-+.+ |-..++++ +|. .+..
T Consensus 220 ~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~--Wq~~T~~k--qfL-PRLg-- 292 (792)
T KOG1963|consen 220 LAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVL--WQLETGKK--QFL-PRLG-- 292 (792)
T ss_pred EEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEE--EeecCCCc--ccc-cccC--
Confidence 57888999999996443 222111221112247999999999999999999999999 44444442 221 1111
Q ss_pred EEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCC
Q 032092 79 TCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDS 140 (147)
Q Consensus 79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~ 140 (147)
.++..+ ++|||+.+.+....|..|.+-.+-+
T Consensus 293 -s~I~~i------------------------------~vS~ds~~~sl~~~DNqI~li~~~d 323 (792)
T KOG1963|consen 293 -SPILHI------------------------------VVSPDSDLYSLVLEDNQIHLIKASD 323 (792)
T ss_pred -CeeEEE------------------------------EEcCCCCeEEEEecCceEEEEeccc
Confidence 134444 9999999989888999999887643
No 241
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.19 E-value=1.4e-05 Score=62.33 Aligned_cols=108 Identities=14% Similarity=0.154 Sum_probs=77.8
Q ss_pred eEeecC--CeEEEEECCCCccceeEecCCC-----C--cceEEEEEccC--CCEEEEEeeCCeEEEEeecCCCCc-ceeE
Q 032092 2 VVGTAD--RNLVVFNLQNPQTEFKRINSPL-----K--YQMRCVAAFPD--QQGFWVGSIEGRVGVHHLDDSQQS-KNFT 69 (147)
Q Consensus 2 ~~gs~d--g~v~iwdi~~~~~~~~~~~~~~-----~--~~i~~la~spd--g~~l~~g~~dg~i~i~~~d~~~~~-~~~~ 69 (147)
|+|+.. ..++|||+.+.++.+.-..-+. . ..++++.|-|. ...||+++--+++++ +|++.++ +...
T Consensus 165 a~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~--YDt~~qRRPV~~ 242 (412)
T KOG3881|consen 165 ATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRL--YDTRHQRRPVAQ 242 (412)
T ss_pred ecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEE--ecCcccCcceeE
Confidence 567777 7899999998854322111111 1 23678889887 789999999999999 8998654 4444
Q ss_pred EEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092 70 FKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146 (147)
Q Consensus 70 ~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~ 146 (147)
|.--. .++.++ ...|+|+.+++|..-|.+..+|++.++.+..
T Consensus 243 fd~~E-----~~is~~------------------------------~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~ 284 (412)
T KOG3881|consen 243 FDFLE-----NPISST------------------------------GLTPSGNFIYTGNTKGQLAKFDLRGGKLLGC 284 (412)
T ss_pred ecccc-----Ccceee------------------------------eecCCCcEEEEecccchhheecccCceeecc
Confidence 42111 134444 8889999999999999999999999887643
No 242
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.18 E-value=2.3e-06 Score=63.83 Aligned_cols=72 Identities=19% Similarity=0.348 Sum_probs=54.4
Q ss_pred ceEEEEEccCC-CEEEEEeeCCeEEEEeecCCCCcc-eeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeee
Q 032092 32 QMRCVAAFPDQ-QGFWVGSIEGRVGVHHLDDSQQSK-NFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFV 109 (147)
Q Consensus 32 ~i~~la~spdg-~~l~~g~~dg~i~i~~~d~~~~~~-~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (147)
.|.+++-+|.. ..+++|+.||.+.+||+ ++... .-.++.|+. +++.+
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~--rn~~~p~S~l~ahk~-----~i~eV------------------------ 229 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDA--RNVAMPVSLLKAHKA-----EIWEV------------------------ 229 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEc--ccccchHHHHHHhhh-----hhhhe------------------------
Confidence 48899999964 56789999999999555 44332 234556664 46666
Q ss_pred eceEEEEEecC-CCeEEEeCCCCcEEEeecCC
Q 032092 110 KSHVIVLFVQI-HHTFATAGSDGAFNFWDKDS 140 (147)
Q Consensus 110 ~~~~~~~fspd-g~~latg~~Dg~i~iWd~~~ 140 (147)
-|||. +..|.|++.||.+.-||..+
T Consensus 230 ------~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 230 ------HFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ------eccCCCchheeEecCCCcEEEEcCCC
Confidence 89995 47899999999999999864
No 243
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.18 E-value=1.3e-05 Score=60.74 Aligned_cols=108 Identities=15% Similarity=0.117 Sum_probs=66.1
Q ss_pred eEeecCCeEEEEECCCCccc-eeEecCCCCcceEEEEEccC-CCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceE
Q 032092 2 VVGTADRNLVVFNLQNPQTE-FKRINSPLKYQMRCVAAFPD-QQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSET 79 (147)
Q Consensus 2 ~~gs~dg~v~iwdi~~~~~~-~~~~~~~~~~~i~~la~spd-g~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~ 79 (147)
+++-.+|.+.+-+...+... ++.. .+|+++....+|+.. .+.+.+|+.||.++. ||.|-.+ ++--|....+.
T Consensus 137 ~vs~s~G~~~~v~~t~~~le~vq~w-k~He~E~Wta~f~~~~pnlvytGgDD~~l~~--~D~R~p~---~~i~~n~kvH~ 210 (339)
T KOG0280|consen 137 FVSDSRGSISGVYETEMVLEKVQTW-KVHEFEAWTAKFSDKEPNLVYTGGDDGSLSC--WDIRIPK---TFIWHNSKVHT 210 (339)
T ss_pred EEEcCCCcEEEEecceeeeeecccc-cccceeeeeeecccCCCceEEecCCCceEEE--EEecCCc---ceeeecceeee
Confidence 45556677775554443211 1122 256677888888764 578889999999999 7776211 22112221111
Q ss_pred EeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEec-CCCeEEEeCCCCcEEEeecCC-ceeee
Q 032092 80 CSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQ-IHHTFATAGSDGAFNFWDKDS-KQRLK 145 (147)
Q Consensus 80 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsp-dg~~latg~~Dg~i~iWd~~~-~~~~~ 145 (147)
..|.++ .-+| .+.++|||+.|-.|++||++. ++.++
T Consensus 211 ~GV~SI------------------------------~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~ 248 (339)
T KOG0280|consen 211 SGVVSI------------------------------YSSPPKPTYIATGSYDECIRVLDTRNMGKPLF 248 (339)
T ss_pred cceEEE------------------------------ecCCCCCceEEEeccccceeeeehhcccCccc
Confidence 123333 4444 678999999999999999984 55553
No 244
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.17 E-value=1.6e-05 Score=63.86 Aligned_cols=95 Identities=20% Similarity=0.086 Sum_probs=59.6
Q ss_pred CeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeC---CeEEEEeecCCCCcceeEEEeccCCceEEeecc
Q 032092 8 RNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIE---GRVGVHHLDDSQQSKNFTFKCHRDGSETCSVIS 84 (147)
Q Consensus 8 g~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~d---g~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~ 84 (147)
..|.+||....+ + +.+.. +...+.+.+|+|||+.|+..+.+ ..|.+ +|..+++.. .+..+.. ....
T Consensus 184 ~~l~i~D~~g~~-~-~~lt~-~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~--~dl~~g~~~-~l~~~~g-----~~~~ 252 (433)
T PRK04922 184 YALQVADSDGYN-P-QTILR-SAEPILSPAWSPDGKKLAYVSFERGRSAIYV--QDLATGQRE-LVASFRG-----INGA 252 (433)
T ss_pred EEEEEECCCCCC-c-eEeec-CCCccccccCCCCCCEEEEEecCCCCcEEEE--EECCCCCEE-EeccCCC-----CccC
Confidence 468899986543 2 23332 33468899999999999987643 35766 666554432 2221111 1122
Q ss_pred ceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEE-EeCCCC--cEEEeecCCcee
Q 032092 85 FTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFA-TAGSDG--AFNFWDKDSKQR 143 (147)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~la-tg~~Dg--~i~iWd~~~~~~ 143 (147)
. +|+|||+.|+ +.+.+| .|++||+.+++.
T Consensus 253 ~------------------------------~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~ 284 (433)
T PRK04922 253 P------------------------------SFSPDGRRLALTLSRDGNPEIYVMDLGSRQL 284 (433)
T ss_pred c------------------------------eECCCCCEEEEEEeCCCCceEEEEECCCCCe
Confidence 3 9999997664 545555 599999987754
No 245
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.17 E-value=1.1e-05 Score=65.99 Aligned_cols=42 Identities=17% Similarity=0.105 Sum_probs=37.4
Q ss_pred CCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEE
Q 032092 28 PLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFK 71 (147)
Q Consensus 28 ~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~ 71 (147)
.|...|++|+..|.|..||+|+.||+++| |.+.+|+.+.++.
T Consensus 398 GHtg~Vr~iSvdp~G~wlasGsdDGtvri--WEi~TgRcvr~~~ 439 (733)
T KOG0650|consen 398 GHTGLVRSISVDPSGEWLASGSDDGTVRI--WEIATGRCVRTVQ 439 (733)
T ss_pred ccCCeEEEEEecCCcceeeecCCCCcEEE--EEeecceEEEEEe
Confidence 56677999999999999999999999999 8888888887764
No 246
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.06 E-value=0.00048 Score=50.18 Aligned_cols=142 Identities=14% Similarity=0.111 Sum_probs=80.6
Q ss_pred eEeecCCeEEEEECCCCccceeEecCC--CCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCc--
Q 032092 2 VVGTADRNLVVFNLQNPQTEFKRINSP--LKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGS-- 77 (147)
Q Consensus 2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~--~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~-- 77 (147)
++++.++.++.+|.++++..-+..... ...-....+...+++.++++..+|.+.. +|+++|+.+..+.......
T Consensus 80 ~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~--~d~~tG~~~w~~~~~~~~~~~ 157 (238)
T PF13360_consen 80 YVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVA--LDPKTGKLLWKYPVGEPRGSS 157 (238)
T ss_dssp EEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEE--EETTTTEEEEEEESSTT-SS-
T ss_pred ccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEE--EecCCCcEEEEeecCCCCCCc
Confidence 456788899999999997543312211 1011223333344889999998999998 9999999988876643211
Q ss_pred --------eEEeecc-ceeeeecCCCcceeeeeee--eeeeeeece-EEEEEecCCCeEEEeCCCCcEEEeecCCceeee
Q 032092 78 --------ETCSVIS-FTSILAGDAPKYSSFYKVK--RLHLFVKSH-VIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLK 145 (147)
Q Consensus 78 --------~~~~v~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~ 145 (147)
...++.. -.++.++.+..+..+ +++ +..+..+-+ ......+++..|+.++.|+.+..||+++++.+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~~~w~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 158 PISSFSDINGSPVISDGRVYVSSGDGRVVAV-DLATGEKLWSKPISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp -EEEETTEEEEEECCTTEEEEECCTSSEEEE-ETTTTEEEEEECSS-ECECEECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred ceeeecccccceEEECCEEEEEcCCCeEEEE-ECCCCCEEEEecCCCccCCceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 0111111 112222222221111 211 111222211 111256777777777799999999999999987
Q ss_pred c
Q 032092 146 V 146 (147)
Q Consensus 146 ~ 146 (147)
+
T Consensus 237 ~ 237 (238)
T PF13360_consen 237 Q 237 (238)
T ss_dssp E
T ss_pred E
Confidence 5
No 247
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.05 E-value=0.00012 Score=55.11 Aligned_cols=104 Identities=13% Similarity=0.064 Sum_probs=68.1
Q ss_pred eEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEe
Q 032092 2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCS 81 (147)
Q Consensus 2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~ 81 (147)
..++.|.++++.++.-+...+. ...+. ..+.+++++||++.+++-+...+|..+.+|...-..+.+....+
T Consensus 132 ~i~sndht~k~~~~~~~s~~~~-~h~~~-~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t------- 202 (344)
T KOG4532|consen 132 NIASNDHTGKTMVVSGDSNKFA-VHNQN-LTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPT------- 202 (344)
T ss_pred eeccCCcceeEEEEecCcccce-eeccc-cceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEeccc-------
Confidence 4567788888888765532111 11111 23789999999999999888899988666654322222222111
Q ss_pred eccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCc
Q 032092 82 VISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSK 141 (147)
Q Consensus 82 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~ 141 (147)
+. . =+..+|+.....||++..||++.|||++..
T Consensus 203 --~D--------~-----------------gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~ 235 (344)
T KOG4532|consen 203 --SD--------H-----------------GFYNSFSENDLQFAVVFQDGTCAIYDVRNM 235 (344)
T ss_pred --CC--------C-----------------ceeeeeccCcceEEEEecCCcEEEEEeccc
Confidence 11 0 012388888889999999999999998753
No 248
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.04 E-value=0.00014 Score=57.16 Aligned_cols=103 Identities=12% Similarity=0.008 Sum_probs=70.4
Q ss_pred CeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEee----------CCeEEEEeecCCCCcceeEEEeccC-C
Q 032092 8 RNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSI----------EGRVGVHHLDDSQQSKNFTFKCHRD-G 76 (147)
Q Consensus 8 g~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~----------dg~i~i~~~d~~~~~~~~~~~~h~~-~ 76 (147)
++|.+.|..+++. ..++..+. .+ +-+ +||||+.+.++.. ++.|.+ ||+.+.+...++..-.. +
T Consensus 27 ~~v~ViD~~~~~v-~g~i~~G~-~P-~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v--~D~~t~~~~~~i~~p~~p~ 100 (352)
T TIGR02658 27 TQVYTIDGEAGRV-LGMTDGGF-LP-NPV-VASDGSFFAHASTVYSRIARGKRTDYVEV--IDPQTHLPIADIELPEGPR 100 (352)
T ss_pred ceEEEEECCCCEE-EEEEEccC-CC-cee-ECCCCCEEEEEeccccccccCCCCCEEEE--EECccCcEEeEEccCCCch
Confidence 8999999999853 34554322 22 345 9999998776655 888999 89988877766642111 0
Q ss_pred ceEE-eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeC-C-CCcEEEeecCCceeeec
Q 032092 77 SETC-SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAG-S-DGAFNFWDKDSKQRLKV 146 (147)
Q Consensus 77 ~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~-~-Dg~i~iWd~~~~~~~~~ 146 (147)
.... .... ++++|||++|+... . +..|-+.|+.+++.+.+
T Consensus 101 ~~~~~~~~~------------------------------~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~e 143 (352)
T TIGR02658 101 FLVGTYPWM------------------------------TSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRM 143 (352)
T ss_pred hhccCccce------------------------------EEECCCCCEEEEecCCCCCEEEEEECCCCcEEEE
Confidence 0000 0111 29999999888766 3 78999999999998865
No 249
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.04 E-value=6.5e-06 Score=65.82 Aligned_cols=111 Identities=14% Similarity=0.221 Sum_probs=75.3
Q ss_pred CeEeecCCeEEEEECCCCccc-----eeEecC-----CCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCC--CC----
Q 032092 1 MVVGTADRNLVVFNLQNPQTE-----FKRINS-----PLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDS--QQ---- 64 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~-----~~~~~~-----~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~--~~---- 64 (147)
+++|+.|--+++||.++-.+. ++.+.. .....|++++++.++.-|.++..|-.|++ +... .|
T Consensus 297 faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYL--F~~~~~~G~~p~ 374 (559)
T KOG1334|consen 297 FAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYL--FNKSMGDGSEPD 374 (559)
T ss_pred cccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEE--eccccccCCCCC
Confidence 478899999999999875431 111111 11235999999988887888888989988 5432 22
Q ss_pred ------ccee-EEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEee
Q 032092 65 ------SKNF-TFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWD 137 (147)
Q Consensus 65 ------~~~~-~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd 137 (147)
.... .|+||++....-.++ =|-|...++.+|+.=|.|.||+
T Consensus 375 ~~s~~~~~~k~vYKGHrN~~TVKgVN--------------------------------FfGPrsEyVvSGSDCGhIFiW~ 422 (559)
T KOG1334|consen 375 PSSPREQYVKRVYKGHRNSRTVKGVN--------------------------------FFGPRSEYVVSGSDCGHIFIWD 422 (559)
T ss_pred CCcchhhccchhhcccccccccceee--------------------------------eccCccceEEecCccceEEEEe
Confidence 1222 267887642211111 4678889999998889999999
Q ss_pred cCCceeee
Q 032092 138 KDSKQRLK 145 (147)
Q Consensus 138 ~~~~~~~~ 145 (147)
-+++++|.
T Consensus 423 K~t~eii~ 430 (559)
T KOG1334|consen 423 KKTGEIIR 430 (559)
T ss_pred cchhHHHH
Confidence 98887653
No 250
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.03 E-value=0.00012 Score=59.11 Aligned_cols=95 Identities=12% Similarity=0.064 Sum_probs=57.0
Q ss_pred eEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEE-EeeCCeEEEEeecCCCCcceeEEEeccCCceEEeecccee
Q 032092 9 NLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWV-GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFTS 87 (147)
Q Consensus 9 ~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~-g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~~~ 87 (147)
.|.+||+.+++. ..+.. ........+|||||+.|+. .+.+|...||.+|..+++. ..+..+.. .....
T Consensus 243 ~L~~~dl~tg~~--~~lt~-~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~-----~~~~p-- 311 (448)
T PRK04792 243 EIFVQDIYTQVR--EKVTS-FPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRA-----IDTEP-- 311 (448)
T ss_pred EEEEEECCCCCe--EEecC-CCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCC-----Cccce--
Confidence 688999988753 22321 1223457899999998875 5667876666688765543 22322221 11222
Q ss_pred eeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCC-CC--cEEEeecCCce
Q 032092 88 ILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGS-DG--AFNFWDKDSKQ 142 (147)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~-Dg--~i~iWd~~~~~ 142 (147)
+|+|||+.|+..+. ++ .|+++|+++++
T Consensus 312 ----------------------------~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~ 341 (448)
T PRK04792 312 ----------------------------SWHPDGKSLIFTSERGGKPQIYRVNLASGK 341 (448)
T ss_pred ----------------------------EECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 89999977655433 33 46667776654
No 251
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=98.02 E-value=3.9e-05 Score=60.34 Aligned_cols=106 Identities=10% Similarity=0.156 Sum_probs=74.4
Q ss_pred CeEeecCCeEEEEECCCCccceeEecC-CCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINS-PLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSET 79 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~-~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~ 79 (147)
|.+|..+++|-+.|+.+.+. +..... .....|.-+..+|..+.||+.+.+|.|.+ ||.+.......+.+..+...
T Consensus 120 ~~SG~~~~~VI~HDiEt~qs-i~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~--~D~Rd~~~~~~~~~~AN~~~- 195 (609)
T KOG4227|consen 120 LYSGERWGTVIKHDIETKQS-IYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSF--IDNRDRQNPISLVLPANSGK- 195 (609)
T ss_pred EecCCCcceeEeeeccccee-eeeecccCcccceeecccCCCCceEEEEecCceEEE--EeccCCCCCCceeeecCCCc-
Confidence 46788999999999998753 222221 12346899999999999999999999999 77765332222222222111
Q ss_pred EeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCC-CeEEEeCCCCcEEEeecCCc
Q 032092 80 CSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIH-HTFATAGSDGAFNFWDKDSK 141 (147)
Q Consensus 80 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg-~~latg~~Dg~i~iWd~~~~ 141 (147)
... ++-|+|.. .+|++.+.-+-+.+||.+..
T Consensus 196 -~F~------------------------------t~~F~P~~P~Li~~~~~~~G~~~~D~R~~ 227 (609)
T KOG4227|consen 196 -NFY------------------------------TAEFHPETPALILVNSETGGPNVFDRRMQ 227 (609)
T ss_pred -cce------------------------------eeeecCCCceeEEeccccCCCCceeeccc
Confidence 112 23899977 78999999999999998754
No 252
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.00 E-value=0.00012 Score=58.84 Aligned_cols=76 Identities=9% Similarity=-0.027 Sum_probs=47.3
Q ss_pred eEEEEEccCCCEEEEEe-eCCeEEEEeecCCC-CcceeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeee
Q 032092 33 MRCVAAFPDQQGFWVGS-IEGRVGVHHLDDSQ-QSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVK 110 (147)
Q Consensus 33 i~~la~spdg~~l~~g~-~dg~i~i~~~d~~~-~~~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (147)
....+|||||+.|+..+ .+|...||.++... +.....+..+.. .+...
T Consensus 283 ~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~-----~~~~p------------------------- 332 (428)
T PRK01029 283 QGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYR-----NSSCP------------------------- 332 (428)
T ss_pred cCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCC-----Cccce-------------------------
Confidence 35679999999888665 46766676565532 222222222211 12223
Q ss_pred ceEEEEEecCCCeEEEeCCC---CcEEEeecCCcee
Q 032092 111 SHVIVLFVQIHHTFATAGSD---GAFNFWDKDSKQR 143 (147)
Q Consensus 111 ~~~~~~fspdg~~latg~~D---g~i~iWd~~~~~~ 143 (147)
+|||||+.|+..+.+ ..|.+||+.+++.
T Consensus 333 -----~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~ 363 (428)
T PRK01029 333 -----AWSPDGKKIAFCSVIKGVRQICVYDLATGRD 363 (428)
T ss_pred -----eECCCCCEEEEEEcCCCCcEEEEEECCCCCe
Confidence 999999888765443 3699999987754
No 253
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.00 E-value=0.00015 Score=57.46 Aligned_cols=96 Identities=20% Similarity=0.127 Sum_probs=58.9
Q ss_pred CCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeC---CeEEEEeecCCCCcceeEEEeccCCceEEeec
Q 032092 7 DRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIE---GRVGVHHLDDSQQSKNFTFKCHRDGSETCSVI 83 (147)
Q Consensus 7 dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~d---g~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~ 83 (147)
...|.++|....+ + +.+.. +...+.+.+|+|||+.++..+.+ ..|.+ ||+.+++.. .+..+.. ...
T Consensus 169 ~~~l~~~d~~g~~-~-~~l~~-~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v--~d~~~g~~~-~~~~~~~-----~~~ 237 (417)
T TIGR02800 169 RYELQVADYDGAN-P-QTITR-SREPILSPAWSPDGQKLAYVSFESGKPEIYV--QDLATGQRE-KVASFPG-----MNG 237 (417)
T ss_pred cceEEEEcCCCCC-C-EEeec-CCCceecccCCCCCCEEEEEEcCCCCcEEEE--EECCCCCEE-EeecCCC-----Ccc
Confidence 3468888886443 2 23332 23357888999999999887654 36766 777655432 2222211 122
Q ss_pred cceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEE-EeCCCC--cEEEeecCCcee
Q 032092 84 SFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFA-TAGSDG--AFNFWDKDSKQR 143 (147)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~la-tg~~Dg--~i~iWd~~~~~~ 143 (147)
.. +|+|||+.|+ +.+.++ .|++||+.+++.
T Consensus 238 ~~------------------------------~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~ 270 (417)
T TIGR02800 238 AP------------------------------AFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL 270 (417)
T ss_pred ce------------------------------EECCCCCEEEEEECCCCCccEEEEECCCCCE
Confidence 23 9999997665 444444 599999877643
No 254
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.99 E-value=9.6e-05 Score=59.10 Aligned_cols=94 Identities=14% Similarity=0.046 Sum_probs=57.0
Q ss_pred eEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeC-C--eEEEEeecCCCCcceeEEEeccCCceEEeeccc
Q 032092 9 NLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIE-G--RVGVHHLDDSQQSKNFTFKCHRDGSETCSVISF 85 (147)
Q Consensus 9 ~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~d-g--~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~ 85 (147)
.|.++|....+ + +.+.. +..++.+.+|||||+.|+..+.+ + .|.+ +|+.+++.. .+..... .....
T Consensus 180 ~l~~~d~~g~~-~-~~l~~-~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~--~~l~~g~~~-~l~~~~g-----~~~~~ 248 (430)
T PRK00178 180 TLQRSDYDGAR-A-VTLLQ-SREPILSPRWSPDGKRIAYVSFEQKRPRIFV--QNLDTGRRE-QITNFEG-----LNGAP 248 (430)
T ss_pred EEEEECCCCCC-c-eEEec-CCCceeeeeECCCCCEEEEEEcCCCCCEEEE--EECCCCCEE-EccCCCC-----CcCCe
Confidence 47778887543 2 23322 23467899999999999876543 3 4555 676655432 1211110 11123
Q ss_pred eeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEE-EeCCCC--cEEEeecCCcee
Q 032092 86 TSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFA-TAGSDG--AFNFWDKDSKQR 143 (147)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~la-tg~~Dg--~i~iWd~~~~~~ 143 (147)
+|+|||+.|+ +...+| .|++||+++++.
T Consensus 249 ------------------------------~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~ 279 (430)
T PRK00178 249 ------------------------------AWSPDGSKLAFVLSKDGNPEIYVMDLASRQL 279 (430)
T ss_pred ------------------------------EECCCCCEEEEEEccCCCceEEEEECCCCCe
Confidence 9999998776 554455 688889987654
No 255
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.98 E-value=2.6e-05 Score=58.24 Aligned_cols=60 Identities=20% Similarity=0.257 Sum_probs=48.4
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccC-CCEEEEEeeCCeEEEEeecCCC
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPD-QQGFWVGSIEGRVGVHHLDDSQ 63 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spd-g~~l~~g~~dg~i~i~~~d~~~ 63 (147)
+++|++||.+-|||.|+...|... ...|+.+|..+-|+|. ++.|.+++.||.+ |.||..+
T Consensus 195 v~cgt~dg~~~l~d~rn~~~p~S~-l~ahk~~i~eV~FHpk~p~~Lft~sedGsl--w~wdas~ 255 (319)
T KOG4714|consen 195 VCCGTDDGIVGLWDARNVAMPVSL-LKAHKAEIWEVHFHPKNPEHLFTCSEDGSL--WHWDAST 255 (319)
T ss_pred EEEecCCCeEEEEEcccccchHHH-HHHhhhhhhheeccCCCchheeEecCCCcE--EEEcCCC
Confidence 368899999999999998655433 3357778999999994 8899999999998 5588763
No 256
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.98 E-value=0.00017 Score=57.71 Aligned_cols=97 Identities=13% Similarity=0.066 Sum_probs=57.0
Q ss_pred CeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEE-EeeCCeEEEEeecCCCCcceeEEEeccCCceEEeeccce
Q 032092 8 RNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWV-GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFT 86 (147)
Q Consensus 8 g~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~-g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~~ 86 (147)
..|.+||+.+++. +.+.. ....+...+|||||+.|+. .+.+|.-.||-+|..+++. ..+..+.. ...+.
T Consensus 223 ~~l~~~~l~~g~~--~~l~~-~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~-----~~~~~- 292 (430)
T PRK00178 223 PRIFVQNLDTGRR--EQITN-FEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQL-SRVTNHPA-----IDTEP- 292 (430)
T ss_pred CEEEEEECCCCCE--EEccC-CCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEcccCCC-----CcCCe-
Confidence 3688999988753 22221 2233557899999998874 4556654444478765543 23332221 11222
Q ss_pred eeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeC-CCC--cEEEeecCCcee
Q 032092 87 SILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAG-SDG--AFNFWDKDSKQR 143 (147)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~-~Dg--~i~iWd~~~~~~ 143 (147)
.|+|||+.|+-.+ .+| .|+++|+.+++.
T Consensus 293 -----------------------------~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~ 323 (430)
T PRK00178 293 -----------------------------FWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA 323 (430)
T ss_pred -----------------------------EECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 8999997665443 333 577778766643
No 257
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.97 E-value=0.00011 Score=55.82 Aligned_cols=64 Identities=19% Similarity=0.241 Sum_probs=46.2
Q ss_pred CeEeecCCeEEEEECCCCccceeEe-cCCCCcceEEEEEcc-CCCEEEEEeeCCeEEEEeecCCC-Ccce
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRI-NSPLKYQMRCVAAFP-DQQGFWVGSIEGRVGVHHLDDSQ-QSKN 67 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~-~~~~~~~i~~la~sp-dg~~l~~g~~dg~i~i~~~d~~~-~~~~ 67 (147)
+.+|++|+.+.-||+|.++. +-.. ..-|...|-||.-+| ++.++++|+-|..|++ ||+|+ ++++
T Consensus 181 vytGgDD~~l~~~D~R~p~~-~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~--~DtRnm~kPl 247 (339)
T KOG0280|consen 181 VYTGGDDGSLSCWDIRIPKT-FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRV--LDTRNMGKPL 247 (339)
T ss_pred EEecCCCceEEEEEecCCcc-eeeecceeeecceEEEecCCCCCceEEEeccccceee--eehhcccCcc
Confidence 46899999999999996542 1111 111334588888777 4789999999999999 88884 3443
No 258
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.94 E-value=0.00017 Score=63.98 Aligned_cols=117 Identities=10% Similarity=0.081 Sum_probs=70.8
Q ss_pred EeecCCeEEEEECCCCccceeE------------ecC-------CCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCC
Q 032092 3 VGTADRNLVVFNLQNPQTEFKR------------INS-------PLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQ 63 (147)
Q Consensus 3 ~gs~dg~v~iwdi~~~~~~~~~------------~~~-------~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~ 63 (147)
+-+.++.|++||+.++...... +.. ..-.....++++|+|+.+++-+.+++|++ ||..+
T Consensus 757 ADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrv--iD~~t 834 (1057)
T PLN02919 757 ADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKK--LDPAT 834 (1057)
T ss_pred EECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEE--EECCC
Confidence 3456789999999876421100 000 00012468999999999999999999999 77654
Q ss_pred CcceeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCcee
Q 032092 64 QSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQR 143 (147)
Q Consensus 64 ~~~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~ 143 (147)
+.. .++.+....+ + .+.. .....++....++++|+|+++++-+.++.|++||+++++.
T Consensus 835 g~v-~tiaG~G~~G--~-~dG~------------------~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 835 KRV-TTLAGTGKAG--F-KDGK------------------ALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CeE-EEEeccCCcC--C-CCCc------------------ccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 433 2332211000 0 0000 0000111122459999999999999999999999988765
No 259
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=97.93 E-value=4e-05 Score=58.59 Aligned_cols=73 Identities=15% Similarity=0.168 Sum_probs=59.3
Q ss_pred cceEEEEEccCCCEEEEEeeCCeEEEEeecCCC-CcceeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeee
Q 032092 31 YQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQ-QSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFV 109 (147)
Q Consensus 31 ~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~-~~~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (147)
.+|+|.||++|...+|++-....|.|+.++-.+ -+...+++.|.. .++.+
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~-----~vtgv------------------------ 61 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDK-----IVTGV------------------------ 61 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCc-----ceeEE------------------------
Confidence 579999999999999999999999995554433 344555555543 45556
Q ss_pred eceEEEEEecCCCeEEEeCCCCcEEEeec
Q 032092 110 KSHVIVLFVQIHHTFATAGSDGAFNFWDK 138 (147)
Q Consensus 110 ~~~~~~~fspdg~~latg~~Dg~i~iWd~ 138 (147)
.|+|..+.|.||+.|...++|-.
T Consensus 62 ------dWap~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 62 ------DWAPKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred ------eecCCCCceeEccCCCCcccccc
Confidence 99999999999999999999987
No 260
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.92 E-value=0.00033 Score=55.02 Aligned_cols=102 Identities=11% Similarity=0.088 Sum_probs=67.0
Q ss_pred cCCeEEEEECCCCcc----ceeEecCCC------CcceEEEEEccCCCEEEEEee----------CCeEEEEeecCCCCc
Q 032092 6 ADRNLVVFNLQNPQT----EFKRINSPL------KYQMRCVAAFPDQQGFWVGSI----------EGRVGVHHLDDSQQS 65 (147)
Q Consensus 6 ~dg~v~iwdi~~~~~----~~~~~~~~~------~~~i~~la~spdg~~l~~g~~----------dg~i~i~~~d~~~~~ 65 (147)
..|+|.+-|+...+. ++..+.... ...+.-++++|+++.+.+... .+.|.+ +|..+++
T Consensus 213 ~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~V--iD~~t~k 290 (352)
T TIGR02658 213 YTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFV--VDAKTGK 290 (352)
T ss_pred cCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEE--EECCCCe
Confidence 349999999755422 222211110 012345999999988777431 135655 8988887
Q ss_pred ceeEEE-eccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCC-eEEEeC-CCCcEEEeecCCce
Q 032092 66 KNFTFK-CHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHH-TFATAG-SDGAFNFWDKDSKQ 142 (147)
Q Consensus 66 ~~~~~~-~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~-~latg~-~Dg~i~iWd~~~~~ 142 (147)
.+.++. ++ .+..+ +++|||+ +|.+.. .++.|.+.|+.+++
T Consensus 291 vi~~i~vG~-------~~~~i------------------------------avS~Dgkp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 291 RLRKIELGH-------EIDSI------------------------------NVSQDAKPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred EEEEEeCCC-------ceeeE------------------------------EECCCCCeEEEEeCCCCCcEEEEECcCCe
Confidence 777664 22 23444 9999998 777655 58899999999998
Q ss_pred eeec
Q 032092 143 RLKV 146 (147)
Q Consensus 143 ~~~~ 146 (147)
.+++
T Consensus 334 ~i~~ 337 (352)
T TIGR02658 334 ELSS 337 (352)
T ss_pred EEee
Confidence 8875
No 261
>PRK02889 tolB translocation protein TolB; Provisional
Probab=97.91 E-value=0.00013 Score=58.62 Aligned_cols=90 Identities=17% Similarity=0.065 Sum_probs=53.7
Q ss_pred CeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeC-C--eEEEEeecCCCCcceeEEEeccCCceEEeecc
Q 032092 8 RNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIE-G--RVGVHHLDDSQQSKNFTFKCHRDGSETCSVIS 84 (147)
Q Consensus 8 g~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~d-g--~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~ 84 (147)
..|.++|..... + ..+.. +...+.+.+|||||+.|+..+.+ + .|.+ ||+.+++.. .+..... ....
T Consensus 176 ~~L~~~D~dG~~-~-~~l~~-~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~--~dl~~g~~~-~l~~~~g-----~~~~ 244 (427)
T PRK02889 176 YQLQISDADGQN-A-QSALS-SPEPIISPAWSPDGTKLAYVSFESKKPVVYV--HDLATGRRR-VVANFKG-----SNSA 244 (427)
T ss_pred cEEEEECCCCCC-c-eEecc-CCCCcccceEcCCCCEEEEEEccCCCcEEEE--EECCCCCEE-EeecCCC-----Cccc
Confidence 467777774432 2 22322 23468899999999999877643 3 3655 777655432 2221111 1122
Q ss_pred ceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEE-EeCCCCcEEEeec
Q 032092 85 FTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFA-TAGSDGAFNFWDK 138 (147)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~la-tg~~Dg~i~iWd~ 138 (147)
. +|+|||+.|+ +.+.||...||.+
T Consensus 245 ~------------------------------~~SPDG~~la~~~~~~g~~~Iy~~ 269 (427)
T PRK02889 245 P------------------------------AWSPDGRTLAVALSRDGNSQIYTV 269 (427)
T ss_pred e------------------------------EECCCCCEEEEEEccCCCceEEEE
Confidence 2 9999998776 5677887666653
No 262
>PRK04792 tolB translocation protein TolB; Provisional
Probab=97.91 E-value=0.00023 Score=57.60 Aligned_cols=96 Identities=14% Similarity=0.052 Sum_probs=57.3
Q ss_pred eEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEee-CCeEEEEeecCCCCcceeEEEeccCCceEEeecccee
Q 032092 9 NLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSI-EGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFTS 87 (147)
Q Consensus 9 ~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~-dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~~~ 87 (147)
.+.++|....+. +.+.. ...++.+.+|||||+.|+..+. ++...||-+|+.+++.. .+..... .....
T Consensus 199 ~l~i~d~dG~~~--~~l~~-~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~-~lt~~~g-----~~~~~-- 267 (448)
T PRK04792 199 QLMIADYDGYNE--QMLLR-SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE-KVTSFPG-----INGAP-- 267 (448)
T ss_pred EEEEEeCCCCCc--eEeec-CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE-EecCCCC-----CcCCe--
Confidence 567778765432 12221 2346788999999999887654 45545555787655432 1211110 01122
Q ss_pred eeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEE-eCCCCc--EEEeecCCcee
Q 032092 88 ILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFAT-AGSDGA--FNFWDKDSKQR 143 (147)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~lat-g~~Dg~--i~iWd~~~~~~ 143 (147)
+|+|||+.|+. .+.+|. |++||+++++.
T Consensus 268 ----------------------------~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~ 298 (448)
T PRK04792 268 ----------------------------RFSPDGKKLALVLSKDGQPEIYVVDIATKAL 298 (448)
T ss_pred ----------------------------eECCCCCEEEEEEeCCCCeEEEEEECCCCCe
Confidence 99999987764 455664 88889877654
No 263
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=0.00012 Score=61.78 Aligned_cols=103 Identities=18% Similarity=0.299 Sum_probs=68.2
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccC-----CCEEEEEeeCCeEEEEeecCCCCcceeEEEeccC
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPD-----QQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRD 75 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spd-----g~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~ 75 (147)
+++||.||+|.|-.+-+.+. .+++. .+.++.+|+++|| .+++++|+.-| +.+ ...+--....+...|..
T Consensus 86 ~asCS~DGkv~I~sl~~~~~-~~~~d--f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL--~er~wlgnk~~v~l~~~ 159 (846)
T KOG2066|consen 86 VASCSDDGKVVIGSLFTDDE-ITQYD--FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVL--SERNWLGNKDSVVLSEG 159 (846)
T ss_pred EEEecCCCcEEEeeccCCcc-ceeEe--cCCcceeEEeccchhhhhhhheeecCcce-EEE--ehhhhhcCccceeeecC
Confidence 58999999999999988753 34443 2357999999998 67899999999 666 43321111111122322
Q ss_pred CceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeee
Q 032092 76 GSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLK 145 (147)
Q Consensus 76 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~ 145 (147)
. +++.++ .| .|+++|=++.+| |+|+|+.+++.+-
T Consensus 160 e---G~I~~i------------------------------~W--~g~lIAWand~G-v~vyd~~~~~~l~ 193 (846)
T KOG2066|consen 160 E---GPIHSI------------------------------KW--RGNLIAWANDDG-VKVYDTPTRQRLT 193 (846)
T ss_pred c---cceEEE------------------------------Ee--cCcEEEEecCCC-cEEEeccccceee
Confidence 2 233333 44 566888887666 8999998887663
No 264
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.87 E-value=4.3e-05 Score=62.33 Aligned_cols=56 Identities=23% Similarity=0.375 Sum_probs=45.0
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCC
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDS 62 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~ 62 (147)
|+.|+.||.|.+||..++... ... .......++|+|+|..|++|+..|.+.+ ||..
T Consensus 274 LvlGC~DgSiiLyD~~~~~t~--~~k--a~~~P~~iaWHp~gai~~V~s~qGelQ~--FD~A 329 (545)
T PF11768_consen 274 LVLGCEDGSIILYDTTRGVTL--LAK--AEFIPTLIAWHPDGAIFVVGSEQGELQC--FDMA 329 (545)
T ss_pred EEEEecCCeEEEEEcCCCeee--eee--ecccceEEEEcCCCcEEEEEcCCceEEE--EEee
Confidence 578999999999999887422 222 2245789999999999999999999999 5554
No 265
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.87 E-value=0.00039 Score=56.17 Aligned_cols=128 Identities=16% Similarity=0.174 Sum_probs=81.9
Q ss_pred CCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEE--eeCCeEEEEeecCCCCcceeEEEeccCCceEEeecc
Q 032092 7 DRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVG--SIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVIS 84 (147)
Q Consensus 7 dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g--~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~ 84 (147)
..+++|++++....++.. ..+.+|...+|.|.++.|++. -.+-.+.+ +|++.+ ..+.+...+.....++...
T Consensus 254 esnLyl~~~~e~~i~V~~---~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~--~~lr~N-l~~~~Pe~~rNT~~fsp~~ 327 (561)
T COG5354 254 ESNLYLLRITERSIPVEK---DLKDPVHDFTWEPLSSRFAVISGYMPASVSV--FDLRGN-LRFYFPEQKRNTIFFSPHE 327 (561)
T ss_pred cceEEEEeecccccceec---cccccceeeeecccCCceeEEecccccceee--cccccc-eEEecCCcccccccccCcc
Confidence 357889999865544331 235689999999999988754 57888888 777633 3333332222222334455
Q ss_pred ceeeeecCCC---cceeeeeeeeeee--eeece--EEEEEecCCCeEEEeCC------CCcEEEeecCC
Q 032092 85 FTSILAGDAP---KYSSFYKVKRLHL--FVKSH--VIVLFVQIHHTFATAGS------DGAFNFWDKDS 140 (147)
Q Consensus 85 ~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~--~~~~fspdg~~latg~~------Dg~i~iWd~~~ 140 (147)
-..+.+|-+. .+..+....|... .+.|- ..|.|+|||+++.+.-. |..|+|||+-.
T Consensus 328 r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 328 RYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYG 396 (561)
T ss_pred cEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecC
Confidence 5666766666 3556666555433 23333 35899999998877643 78999999754
No 266
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.85 E-value=4.3e-05 Score=38.19 Aligned_cols=23 Identities=35% Similarity=0.657 Sum_probs=21.4
Q ss_pred EEEecCCCeEEEeCCCCcEEEee
Q 032092 115 VLFVQIHHTFATAGSDGAFNFWD 137 (147)
Q Consensus 115 ~~fspdg~~latg~~Dg~i~iWd 137 (147)
+.|+|.++++++++.|+.+++||
T Consensus 18 ~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 18 VAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEECCCCCEEEEecCCCeEEEcC
Confidence 49999999999999999999996
No 267
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.83 E-value=9.1e-05 Score=57.35 Aligned_cols=117 Identities=10% Similarity=0.085 Sum_probs=74.7
Q ss_pred eEeecCCeEEEEECCCCc------cceeEecCCCC--------cceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcce
Q 032092 2 VVGTADRNLVVFNLQNPQ------TEFKRINSPLK--------YQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKN 67 (147)
Q Consensus 2 ~~gs~dg~v~iwdi~~~~------~~~~~~~~~~~--------~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~ 67 (147)
+..+.-|+|+|-|+|... +.+.....|.. .+|..+.|+++|+++++=+- -+|+|||.+. ..+++
T Consensus 230 ~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nm-e~~pv 307 (433)
T KOG1354|consen 230 VYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNM-EAKPV 307 (433)
T ss_pred EEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccc-cCCcc
Confidence 456788999999999532 11111111111 24788999999999887543 7899955544 45777
Q ss_pred eEEEeccCCc-eEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCc
Q 032092 68 FTFKCHRDGS-ETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSK 141 (147)
Q Consensus 68 ~~~~~h~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~ 141 (147)
.+++.|..-. ..+.++.- -.+...+.|+|+-++.+++||+....++++++..+
T Consensus 308 ~t~~vh~~lr~kLc~lYEn---------------------D~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 308 ETYPVHEYLRSKLCSLYEN---------------------DAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred eEEeehHhHHHHHHHHhhc---------------------cchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 7887775310 00011100 01222345799999999999999999999996543
No 268
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.82 E-value=2.8e-05 Score=65.22 Aligned_cols=102 Identities=19% Similarity=0.228 Sum_probs=73.8
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCC-cceeEEEeccCCceE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQ-SKNFTFKCHRDGSET 79 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~-~~~~~~~~h~~~~~~ 79 (147)
|++++.|-.|..||++.+..++....+-+ .....|+|+-....+.+.+-...|++ ||.+.| .++..+++|..
T Consensus 130 latcsvdt~vh~wd~rSp~~p~ys~~~w~-s~asqVkwnyk~p~vlasshg~~i~v--wd~r~gs~pl~s~K~~vs---- 202 (1081)
T KOG0309|consen 130 LATCSVDTYVHAWDMRSPHRPFYSTSSWR-SAASQVKWNYKDPNVLASSHGNDIFV--WDLRKGSTPLCSLKGHVS---- 202 (1081)
T ss_pred eeeccccccceeeeccCCCcceeeeeccc-ccCceeeecccCcchhhhccCCceEE--EeccCCCcceEEecccce----
Confidence 68999999999999999988876554322 23577899875444444455577888 888764 56667777653
Q ss_pred EeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecC-CCeEEEeCCCCcEEEeecCC
Q 032092 80 CSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQI-HHTFATAGSDGAFNFWDKDS 140 (147)
Q Consensus 80 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspd-g~~latg~~Dg~i~iWd~~~ 140 (147)
.++++ +|+.- ...+.++++|++|++||.++
T Consensus 203 -~vn~~------------------------------~fnr~~~s~~~s~~~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 203 -SVNSI------------------------------DFNRFKYSEIMSSSNDGTVKFWDYSK 233 (1081)
T ss_pred -eeehH------------------------------HHhhhhhhhhcccCCCCceeeecccc
Confidence 46666 67653 35788999999999999753
No 269
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.81 E-value=0.00011 Score=64.39 Aligned_cols=66 Identities=12% Similarity=0.108 Sum_probs=47.7
Q ss_pred CeEeecCCeEEEEECCCCccceeEecC-CCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINS-PLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFT 69 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~-~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~ 69 (147)
|+.+..-+.|..||++..... -++.. +..+-|++++.+|-++.+++|+..|.+-+ ||+|=+.++..
T Consensus 1166 lvy~T~~~~iv~~D~r~~~~~-w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~l--WDLRF~~~i~s 1232 (1431)
T KOG1240|consen 1166 LVYATDLSRIVSWDTRMRHDA-WRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVL--WDLRFRVPILS 1232 (1431)
T ss_pred EEEEEeccceEEecchhhhhH-HhhhcCccccceeEEEecCCceEEEEecCCceEEE--EEeecCceeec
Confidence 456677888999999987532 12221 12246999999999999999999999999 67664444433
No 270
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.00012 Score=60.29 Aligned_cols=77 Identities=16% Similarity=0.172 Sum_probs=61.2
Q ss_pred ceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeec-cceeeeecCCCcceeeeeeeeeeeeee
Q 032092 32 QMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVI-SFTSILAGDAPKYSSFYKVKRLHLFVK 110 (147)
Q Consensus 32 ~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (147)
.+.-+.|+|.-+.+|.+..+|.+.|+ ... .+.+.++.-|.. ++. ++
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~--R~n-~qRlwtip~p~~-----~v~~sL------------------------- 68 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIH--RLN-WQRLWTIPIPGE-----NVTASL------------------------- 68 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEE--Eec-cceeEeccCCCC-----ccceee-------------------------
Confidence 37789999999999999999999883 332 455566654432 123 44
Q ss_pred ceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092 111 SHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146 (147)
Q Consensus 111 ~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~ 146 (147)
+|.|||+.||-|-.||+|++=|.+++..+..
T Consensus 69 -----~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 69 -----CWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred -----eecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 9999999999999999999999999988776
No 271
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.72 E-value=0.0001 Score=57.05 Aligned_cols=109 Identities=17% Similarity=0.226 Sum_probs=69.0
Q ss_pred ecCCeEEEEECCCCccceeEecC-CCC-----cceEEEEEccC-CCEEEEEeeCCeEEEEeecCCCCcce----eEEEec
Q 032092 5 TADRNLVVFNLQNPQTEFKRINS-PLK-----YQMRCVAAFPD-QQGFWVGSIEGRVGVHHLDDSQQSKN----FTFKCH 73 (147)
Q Consensus 5 s~dg~v~iwdi~~~~~~~~~~~~-~~~-----~~i~~la~spd-g~~l~~g~~dg~i~i~~~d~~~~~~~----~~~~~h 73 (147)
++|=.|.||++.-..+.+..... |.+ .-|++-.|+|. .+.|+.+++.|+|+| -|.|+...- ..|...
T Consensus 182 ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL--cDmR~~aLCd~hsKlfEep 259 (433)
T KOG1354|consen 182 ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL--CDMRQSALCDAHSKLFEEP 259 (433)
T ss_pred ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE--eechhhhhhcchhhhhccc
Confidence 56778999999876555554432 333 23889999997 678999999999999 777642111 111100
Q ss_pred cCC-ce------EEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeec-CCceeee
Q 032092 74 RDG-SE------TCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDK-DSKQRLK 145 (147)
Q Consensus 74 ~~~-~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~-~~~~~~~ 145 (147)
... .. ..++.. +.|+++|++++|-+. -+|++||+ .+.+.+.
T Consensus 260 edp~~rsffseiIsSISD------------------------------vKFs~sGryilsRDy-ltvk~wD~nme~~pv~ 308 (433)
T KOG1354|consen 260 EDPSSRSFFSEIISSISD------------------------------VKFSHSGRYILSRDY-LTVKLWDLNMEAKPVE 308 (433)
T ss_pred cCCcchhhHHHHhhhhhc------------------------------eEEccCCcEEEEecc-ceeEEEeccccCCcce
Confidence 000 00 011111 499999999999654 47999998 3455554
Q ss_pred c
Q 032092 146 V 146 (147)
Q Consensus 146 ~ 146 (147)
+
T Consensus 309 t 309 (433)
T KOG1354|consen 309 T 309 (433)
T ss_pred E
Confidence 4
No 272
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.71 E-value=0.0013 Score=47.86 Aligned_cols=107 Identities=16% Similarity=0.122 Sum_probs=67.7
Q ss_pred eEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEE-EeccCCceEE
Q 032092 2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTF-KCHRDGSETC 80 (147)
Q Consensus 2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~-~~h~~~~~~~ 80 (147)
++++.++.+..||+.+++.. -+...+. ++.... ..++..+++++.++.+.. +|..+|+.+.+. ........
T Consensus 40 ~~~~~~~~l~~~d~~tG~~~-W~~~~~~--~~~~~~-~~~~~~v~v~~~~~~l~~--~d~~tG~~~W~~~~~~~~~~~-- 111 (238)
T PF13360_consen 40 YVASGDGNLYALDAKTGKVL-WRFDLPG--PISGAP-VVDGGRVYVGTSDGSLYA--LDAKTGKVLWSIYLTSSPPAG-- 111 (238)
T ss_dssp EEEETTSEEEEEETTTSEEE-EEEECSS--CGGSGE-EEETTEEEEEETTSEEEE--EETTTSCEEEEEEE-SSCTCS--
T ss_pred EEEcCCCEEEEEECCCCCEE-EEeeccc--ccccee-eecccccccccceeeeEe--cccCCcceeeeeccccccccc--
Confidence 45678999999999999753 2232211 111111 233667777778888877 898899988773 32211000
Q ss_pred eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092 81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146 (147)
Q Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~ 146 (147)
..... +...++..++.+..++.|..+|.++|+.+.+
T Consensus 112 ~~~~~------------------------------~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~ 147 (238)
T PF13360_consen 112 VRSSS------------------------------SPAVDGDRLYVGTSSGKLVALDPKTGKLLWK 147 (238)
T ss_dssp TB--S------------------------------EEEEETTEEEEEETCSEEEEEETTTTEEEEE
T ss_pred ccccc------------------------------CceEecCEEEEEeccCcEEEEecCCCcEEEE
Confidence 00111 3344477788888899999999999998764
No 273
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.71 E-value=0.0015 Score=50.95 Aligned_cols=107 Identities=18% Similarity=0.243 Sum_probs=62.1
Q ss_pred EeecCCeEEEEECC--CCcc-ceeEecC-C--C--CcceEEEEEccCCCEEEEE-eeCCeEEEEeecCCCCccee--EEE
Q 032092 3 VGTADRNLVVFNLQ--NPQT-EFKRINS-P--L--KYQMRCVAAFPDQQGFWVG-SIEGRVGVHHLDDSQQSKNF--TFK 71 (147)
Q Consensus 3 ~gs~dg~v~iwdi~--~~~~-~~~~~~~-~--~--~~~i~~la~spdg~~l~~g-~~dg~i~i~~~d~~~~~~~~--~~~ 71 (147)
+.-.+++|.+|++. +++. ....+.. + . ......|+++|||++|.++ -.+++|.++++|..+++... .+.
T Consensus 209 ~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~ 288 (345)
T PF10282_consen 209 VNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVP 288 (345)
T ss_dssp EETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEE
T ss_pred ecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEe
Confidence 34457889999988 3321 1112211 1 1 1146789999999986654 46788999666655554321 111
Q ss_pred eccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCC-CCcEEEeec--CCceee
Q 032092 72 CHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGS-DGAFNFWDK--DSKQRL 144 (147)
Q Consensus 72 ~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~-Dg~i~iWd~--~~~~~~ 144 (147)
.... .+..+ +++|+|++|+.+.. ++.|.+|++ ++|++.
T Consensus 289 ~~G~-----~Pr~~------------------------------~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~ 329 (345)
T PF10282_consen 289 TGGK-----FPRHF------------------------------AFSPDGRYLYVANQDSNTVSVFDIDPDTGKLT 329 (345)
T ss_dssp ESSS-----SEEEE------------------------------EE-TTSSEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred CCCC-----CccEE------------------------------EEeCCCCEEEEEecCCCeEEEEEEeCCCCcEE
Confidence 1000 12233 99999998887765 568998866 466543
No 274
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.65 E-value=0.0013 Score=52.96 Aligned_cols=74 Identities=16% Similarity=0.151 Sum_probs=46.2
Q ss_pred ceEEEEEccCCCEEEEEeeC-C--eEEEEeecCCCCcceeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeee
Q 032092 32 QMRCVAAFPDQQGFWVGSIE-G--RVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLF 108 (147)
Q Consensus 32 ~i~~la~spdg~~l~~g~~d-g--~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (147)
.+...+|||||+.|+..+.+ | .|.+ +|+.+++.. .+..... .+...
T Consensus 328 ~~~~p~wSPDG~~Laf~~~~~g~~~I~v--~dl~~g~~~-~Lt~~~~-----~~~~p----------------------- 376 (428)
T PRK01029 328 NSSCPAWSPDGKKIAFCSVIKGVRQICV--YDLATGRDY-QLTTSPE-----NKESP----------------------- 376 (428)
T ss_pred CccceeECCCCCEEEEEEcCCCCcEEEE--EECCCCCeE-EccCCCC-----Cccce-----------------------
Confidence 46788999999998866543 3 4656 777655432 2221110 12223
Q ss_pred eeceEEEEEecCCCeEEE-eCC--CCcEEEeecCCcee
Q 032092 109 VKSHVIVLFVQIHHTFAT-AGS--DGAFNFWDKDSKQR 143 (147)
Q Consensus 109 ~~~~~~~~fspdg~~lat-g~~--Dg~i~iWd~~~~~~ 143 (147)
+|+|||+.|+- +.. ...|++||+.+++.
T Consensus 377 -------~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 377 -------SWAIDSLHLVYSAGNSNESELYLISLITKKT 407 (428)
T ss_pred -------EECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 99999987763 332 45799999877654
No 275
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.00022 Score=56.12 Aligned_cols=73 Identities=12% Similarity=0.110 Sum_probs=57.2
Q ss_pred cceEEEEEccCCC-EEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeee
Q 032092 31 YQMRCVAAFPDQQ-GFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFV 109 (147)
Q Consensus 31 ~~i~~la~spdg~-~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (147)
..|++|+|||..+ .+..++.+.+|+| +|+++......+..|+ ++.+.
T Consensus 194 ~~IrdlafSp~~~GLl~~asl~nkiki--~dlet~~~vssy~a~~------~~wSC------------------------ 241 (463)
T KOG1645|consen 194 SFIRDLAFSPFNEGLLGLASLGNKIKI--MDLETSCVVSSYIAYN------QIWSC------------------------ 241 (463)
T ss_pred hhhhhhccCccccceeeeeccCceEEE--EecccceeeeheeccC------Cceee------------------------
Confidence 4599999999877 6788999999999 8887655555555443 24444
Q ss_pred eceEEEEEecCC-CeEEEeCCCCcEEEeecCCc
Q 032092 110 KSHVIVLFVQIH-HTFATAGSDGAFNFWDKDSK 141 (147)
Q Consensus 110 ~~~~~~~fspdg-~~latg~~Dg~i~iWd~~~~ 141 (147)
+|.-|. +++.+|..+|.|.|+|++..
T Consensus 242 ------~wDlde~h~IYaGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 242 ------CWDLDERHVIYAGLQNGMVLVYDMRQP 268 (463)
T ss_pred ------eeccCCcceeEEeccCceEEEEEccCC
Confidence 888876 88999999999999999753
No 276
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.56 E-value=0.0018 Score=50.88 Aligned_cols=101 Identities=10% Similarity=0.115 Sum_probs=63.9
Q ss_pred eEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEe
Q 032092 2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCS 81 (147)
Q Consensus 2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~ 81 (147)
.+++.+|.++.||.++++.. -... .. .....+ .++..+.+++.||.+.. +|..+++.+..+...... .
T Consensus 245 y~~~~~g~l~a~d~~tG~~~-W~~~--~~-~~~~p~--~~~~~vyv~~~~G~l~~--~d~~tG~~~W~~~~~~~~----~ 312 (377)
T TIGR03300 245 YAVSYQGRVAALDLRSGRVL-WKRD--AS-SYQGPA--VDDNRLYVTDADGVVVA--LDRRSGSELWKNDELKYR----Q 312 (377)
T ss_pred EEEEcCCEEEEEECCCCcEE-Eeec--cC-CccCce--EeCCEEEEECCCCeEEE--EECCCCcEEEccccccCC----c
Confidence 45677899999999998642 2121 11 111222 34677888889999998 888778766544211100 0
Q ss_pred eccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092 82 VISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146 (147)
Q Consensus 82 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~ 146 (147)
..+. . ..+..++.++.||.++++|.++++.+.+
T Consensus 313 ~ssp------------------------------~--i~g~~l~~~~~~G~l~~~d~~tG~~~~~ 345 (377)
T TIGR03300 313 LTAP------------------------------A--VVGGYLVVGDFEGYLHWLSREDGSFVAR 345 (377)
T ss_pred cccC------------------------------E--EECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence 0111 1 1456888888999999999999888754
No 277
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.56 E-value=0.0021 Score=57.28 Aligned_cols=125 Identities=13% Similarity=0.119 Sum_probs=69.1
Q ss_pred eEeecCCeEEEEECCCCccceeEecCC--------------CCcceEEEEEccCCC-EEEEEeeCCeEEEEeecCCCCcc
Q 032092 2 VVGTADRNLVVFNLQNPQTEFKRINSP--------------LKYQMRCVAAFPDQQ-GFWVGSIEGRVGVHHLDDSQQSK 66 (147)
Q Consensus 2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~--------------~~~~i~~la~spdg~-~l~~g~~dg~i~i~~~d~~~~~~ 66 (147)
++.+.++.|++||..++.. ..+... .-.....|+++|+|+ .+++-+.+++|++ ||+.++..
T Consensus 699 Vad~~~~~I~v~d~~~g~v--~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv--~D~~tg~~ 774 (1057)
T PLN02919 699 IAMAGQHQIWEYNISDGVT--RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRA--LDLKTGGS 774 (1057)
T ss_pred EEECCCCeEEEEECCCCeE--EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEE--EECCCCcE
Confidence 3445678899999887632 111100 001346799999998 5566677899999 66654432
Q ss_pred eeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceee
Q 032092 67 NFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRL 144 (147)
Q Consensus 67 ~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~ 144 (147)
. .+.+ .. +..+..+...|..++.. ....+..-..++++|+|+++++-..++.|++||.+++...
T Consensus 775 ~-~~~g-g~-----~~~~~~l~~fG~~dG~g-------~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~ 838 (1057)
T PLN02919 775 R-LLAG-GD-----PTFSDNLFKFGDHDGVG-------SEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT 838 (1057)
T ss_pred E-EEEe-cc-----cccCcccccccCCCCch-------hhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE
Confidence 1 1111 00 00000000111111100 0001111235699999999999999999999999877653
No 278
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=97.56 E-value=0.00016 Score=58.05 Aligned_cols=105 Identities=15% Similarity=0.155 Sum_probs=68.8
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccC--CCEEEEEeeCCeEEEEeecCCCCcc-eeEEEeccCCc
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPD--QQGFWVGSIEGRVGVHHLDDSQQSK-NFTFKCHRDGS 77 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spd--g~~l~~g~~dg~i~i~~~d~~~~~~-~~~~~~h~~~~ 77 (147)
|++|+.|..|-+||...++. ...+.++|...|..-.|-|. ...+++++.||++++-.++...... ...+.-|..
T Consensus 157 l~SgSDD~~vv~WdW~~~~~-~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g-- 233 (559)
T KOG1334|consen 157 LASGSDDLQVVVWDWVSGSP-KLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEG-- 233 (559)
T ss_pred eeccCccceEEeehhhccCc-ccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccC--
Confidence 68999999999999998853 44566666555555567775 4679999999999984444332111 112222433
Q ss_pred eEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCC-CeEEEeCCCCcEEEeecCCc
Q 032092 78 ETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIH-HTFATAGSDGAFNFWDKDSK 141 (147)
Q Consensus 78 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg-~~latg~~Dg~i~iWd~~~~ 141 (147)
++..+ +.-|+. ..|.|+|.|+.+.=.|++..
T Consensus 234 ---~vhkl------------------------------av~p~sp~~f~S~geD~~v~~~Dlr~~ 265 (559)
T KOG1334|consen 234 ---PVHKL------------------------------AVEPDSPKPFLSCGEDAVVFHIDLRQD 265 (559)
T ss_pred ---cccee------------------------------eecCCCCCcccccccccceeeeeeccC
Confidence 34444 566655 56788888888777776554
No 279
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.55 E-value=0.00031 Score=58.57 Aligned_cols=108 Identities=17% Similarity=0.235 Sum_probs=72.6
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC 80 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~ 80 (147)
|+.|+.-|.+++|+-..++-. +.........+..+.+|++..+.|+|+..|.|.++-...+ +.....+..|-...+..
T Consensus 48 l~~GsS~G~lyl~~R~~~~~~-~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~-~p~~~~~~t~~d~~~~~ 125 (726)
T KOG3621|consen 48 LAMGSSAGSVYLYNRHTGEMR-KLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKE-LPRDLDYVTPCDKSHKC 125 (726)
T ss_pred EEEecccceEEEEecCchhhh-cccccCccceEEEEEecchhHhhhhhcCCceEEeehhhcc-CCCcceeeccccccCCc
Confidence 578999999999998877432 2112112234666788999999999999999998433332 22222222222222223
Q ss_pred eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCC
Q 032092 81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDS 140 (147)
Q Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~ 140 (147)
.|+++ +|++++..+.+|..-|+|..=-+.+
T Consensus 126 rVTal------------------------------~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 126 RVTAL------------------------------EWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred eEEEE------------------------------EecccccEEeecCCCceEEEEEech
Confidence 46665 9999999999999999998776655
No 280
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.53 E-value=0.00083 Score=52.08 Aligned_cols=85 Identities=18% Similarity=0.368 Sum_probs=60.4
Q ss_pred ceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeeccceeeeecCCCcceeee
Q 032092 21 EFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFY 100 (147)
Q Consensus 21 ~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~ 100 (147)
++.++. ++..++.+++|.|....+-+|..|..+.+|++-.+.+. .+.+.+|... +..+
T Consensus 189 ~i~~~~-~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~-~~el~gh~~k-----V~~l--------------- 246 (404)
T KOG1409|consen 189 LITTFN-GHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGT-AYELQGHNDK-----VQAL--------------- 246 (404)
T ss_pred eEEEEc-CcccceEEEEEcCCCcEEEeccccCceEEEeccCCcce-eeeeccchhh-----hhhh---------------
Confidence 344443 56678999999999999999999999999555444332 2455666543 3333
Q ss_pred eeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCce
Q 032092 101 KVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQ 142 (147)
Q Consensus 101 ~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~ 142 (147)
..-+--+.|.+++.||.|-+||.+-.+
T Consensus 247 ---------------~~~~~t~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 247 ---------------SYAQHTRQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred ---------------hhhhhheeeeeccCCCeEEEEecccee
Confidence 333344789999999999999987544
No 281
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.00082 Score=53.81 Aligned_cols=110 Identities=10% Similarity=-0.029 Sum_probs=74.1
Q ss_pred ecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCC------CcceeEEEeccCC--
Q 032092 5 TADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQ------QSKNFTFKCHRDG-- 76 (147)
Q Consensus 5 s~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~------~~~~~~~~~h~~~-- 76 (147)
..+|.+.++|-+...++......-|-.+|.++-++|-++.+++....|.|.- |.... .+....++....-
T Consensus 119 ~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEy--Ws~e~~~qfPr~~l~~~~K~eTdLy~ 196 (558)
T KOG0882|consen 119 FKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEY--WSAEGPFQFPRTNLNFELKHETDLYG 196 (558)
T ss_pred ccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEe--ecCCCcccCccccccccccccchhhc
Confidence 4578999999887543332233335568999999999999999999999987 55431 1111112111000
Q ss_pred --ceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092 77 --SETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146 (147)
Q Consensus 77 --~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~ 146 (147)
...... .++.|+|+|..+++=+.|.+|++++.+++++++.
T Consensus 197 f~K~Kt~p------------------------------ts~Efsp~g~qistl~~DrkVR~F~~KtGklvqe 238 (558)
T KOG0882|consen 197 FPKAKTEP------------------------------TSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQE 238 (558)
T ss_pred ccccccCc------------------------------cceEEccccCcccccCcccEEEEEEeccchhhhh
Confidence 000011 1349999999999999999999999999988764
No 282
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.43 E-value=0.0036 Score=55.04 Aligned_cols=132 Identities=9% Similarity=0.088 Sum_probs=74.0
Q ss_pred CeEeecCCeEEEE----ECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCC
Q 032092 1 MVVGTADRNLVVF----NLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDG 76 (147)
Q Consensus 1 l~~gs~dg~v~iw----di~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~ 76 (147)
|+.+..+|.|-++ |..+.+. ... ......|.+++||||++.+|..+.+|++.+ ++ ++..++....-+...
T Consensus 90 l~~~~~~Gdi~~~~~~~~~~~~~~--E~V-G~vd~GI~a~~WSPD~Ella~vT~~~~l~~--mt-~~fd~i~E~~l~~~~ 163 (928)
T PF04762_consen 90 LCIALASGDIILVREDPDPDEDEI--EIV-GSVDSGILAASWSPDEELLALVTGEGNLLL--MT-RDFDPISEVPLDSDD 163 (928)
T ss_pred EEEEECCceEEEEEccCCCCCcee--EEE-EEEcCcEEEEEECCCcCEEEEEeCCCEEEE--Ee-ccceEEEEeecCccc
Confidence 3567788989888 5555432 222 122346999999999999999999999987 64 334444433322211
Q ss_pred ceEEeeccceeee--ecCCCccee---eee------------eeeeee-eeeceEEEEEecCCCeEEEeCC---C---Cc
Q 032092 77 SETCSVISFTSIL--AGDAPKYSS---FYK------------VKRLHL-FVKSHVIVLFVQIHHTFATAGS---D---GA 132 (147)
Q Consensus 77 ~~~~~v~~~~~~~--~~~~~~~~~---~~~------------~~~~~~-~~~~~~~~~fspdg~~latg~~---D---g~ 132 (147)
......++ +|...+=.. .+. .+.... .-.+-.+++|-.||++||..+- + ..
T Consensus 164 -----~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~ 238 (928)
T PF04762_consen 164 -----FGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRV 238 (928)
T ss_pred -----cCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeE
Confidence 00000011 122111000 000 000001 1224467899999999999875 3 47
Q ss_pred EEEeecCCceee
Q 032092 133 FNFWDKDSKQRL 144 (147)
Q Consensus 133 i~iWd~~~~~~~ 144 (147)
+|||+-+ |.+.
T Consensus 239 iRVy~Re-G~L~ 249 (928)
T PF04762_consen 239 IRVYSRE-GELQ 249 (928)
T ss_pred EEEECCC-ceEE
Confidence 9999964 6544
No 283
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.42 E-value=0.00038 Score=57.19 Aligned_cols=112 Identities=13% Similarity=0.187 Sum_probs=71.1
Q ss_pred EeecCCeEEEEECCCCccceeEecC-CCCcceEEEEEccC--CCEEEEE-eeCCeEEEEeecCCCCcceeEEEeccCCce
Q 032092 3 VGTADRNLVVFNLQNPQTEFKRINS-PLKYQMRCVAAFPD--QQGFWVG-SIEGRVGVHHLDDSQQSKNFTFKCHRDGSE 78 (147)
Q Consensus 3 ~gs~dg~v~iwdi~~~~~~~~~~~~-~~~~~i~~la~spd--g~~l~~g-~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~ 78 (147)
+++.||.|.+||--.+.. ..+... +....+.-+..-|+ ...+++| +...++++ +|.|...-...++......
T Consensus 799 i~ScD~giHlWDPFigr~-Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl--~DaRsce~~~E~kVcna~~- 874 (1034)
T KOG4190|consen 799 IASCDGGIHLWDPFIGRL-LAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKL--FDARSCEWTCELKVCNAPG- 874 (1034)
T ss_pred eeeccCcceeecccccch-hHhhhcCcccCCCceeEecccCcchheeeeccchhhhee--eecccccceeeEEeccCCC-
Confidence 467899999999876642 222222 21122333333343 3444454 78999999 9998766655554321111
Q ss_pred EEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092 79 TCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF 147 (147)
Q Consensus 79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~ 147 (147)
++.+.. .++..|.|+.+|.|-++|.|.+-|.++|+.+..|
T Consensus 875 ---Pna~~R--------------------------~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINsw 914 (1034)
T KOG4190|consen 875 ---PNALTR--------------------------AIAVADKGNKLAAALSNGCIAILDARNGKVINSW 914 (1034)
T ss_pred ---Cchhee--------------------------EEEeccCcchhhHHhcCCcEEEEecCCCceeccC
Confidence 112100 1277899999999999999999999999988653
No 284
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=97.41 E-value=0.00066 Score=52.52 Aligned_cols=106 Identities=12% Similarity=0.059 Sum_probs=59.2
Q ss_pred EEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccC-CceEEeeccceee-eecCCCcceeeeeeeeeeee---e
Q 032092 35 CVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRD-GSETCSVISFTSI-LAGDAPKYSSFYKVKRLHLF---V 109 (147)
Q Consensus 35 ~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~-~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~---~ 109 (147)
-.+|||+|+++|+.+.- .+.| .|..+-+..+-|.+-.. .-..+..++...+ ...-++.++++. +.+..++ -
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlvi--Rd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvws-l~Qpew~ckId 88 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVI--RDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWS-LVQPEWYCKID 88 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEE--eccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEE-eecceeEEEec
Confidence 45899999999998865 6666 77765433322222110 0112333333222 223333333322 2222221 1
Q ss_pred ---eceEEEEEecCCC-eEEEeCCCCcEEEeecCCceee
Q 032092 110 ---KSHVIVLFVQIHH-TFATAGSDGAFNFWDKDSKQRL 144 (147)
Q Consensus 110 ---~~~~~~~fspdg~-~latg~~Dg~i~iWd~~~~~~~ 144 (147)
-|..+..|||||+ .|.+..-|-.|.+|.+.+.+..
T Consensus 89 eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~ 127 (447)
T KOG4497|consen 89 EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY 127 (447)
T ss_pred cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE
Confidence 2234679999995 5667777999999999887654
No 285
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.37 E-value=0.00048 Score=34.09 Aligned_cols=29 Identities=21% Similarity=0.156 Sum_probs=25.6
Q ss_pred CCcceEEEEEccCCCEEEEEeeCCeEEEE
Q 032092 29 LKYQMRCVAAFPDQQGFWVGSIEGRVGVH 57 (147)
Q Consensus 29 ~~~~i~~la~spdg~~l~~g~~dg~i~i~ 57 (147)
+...|.+++|+|+++.+++++.||.+++|
T Consensus 11 ~~~~i~~~~~~~~~~~~~~~~~d~~~~~~ 39 (40)
T smart00320 11 HTGPVTSVAFSPDGKYLASASDDGTIKLW 39 (40)
T ss_pred cCCceeEEEECCCCCEEEEecCCCeEEEc
Confidence 34579999999999999999999999993
No 286
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.32 E-value=0.00055 Score=52.67 Aligned_cols=115 Identities=18% Similarity=0.233 Sum_probs=69.4
Q ss_pred eecCCeEEEEECCCCccceeEecC-CCCc-----ceEEEEEccC-CCEEEEEeeCCeEEEEeecCCCCcc------eeEE
Q 032092 4 GTADRNLVVFNLQNPQTEFKRINS-PLKY-----QMRCVAAFPD-QQGFWVGSIEGRVGVHHLDDSQQSK------NFTF 70 (147)
Q Consensus 4 gs~dg~v~iwdi~~~~~~~~~~~~-~~~~-----~i~~la~spd-g~~l~~g~~dg~i~i~~~d~~~~~~------~~~~ 70 (147)
.+.|=.|.+|++......+..... |++. -|++-.|+|. ...|..+++.|.|+| -|.|+... +...
T Consensus 189 SaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl--~DlRq~alcdn~~klfe~ 266 (460)
T COG5170 189 SADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKL--NDLRQSALCDNSKKLFEL 266 (460)
T ss_pred eccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEe--hhhhhhhhccCchhhhhh
Confidence 356778999999876555554332 4432 3889999997 567888899999999 88874211 1111
Q ss_pred EeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCC-ceeeec
Q 032092 71 KCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDS-KQRLKV 146 (147)
Q Consensus 71 ~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~-~~~~~~ 146 (147)
.-.... ++-..-++ ..+.-+.|+|.|+++++-+. -+|+|||.+. +.+++|
T Consensus 267 ~~D~v~-----~~ff~eiv--------------------sSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikT 317 (460)
T COG5170 267 TIDGVD-----VDFFEEIV--------------------SSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKT 317 (460)
T ss_pred ccCccc-----chhHHHHh--------------------hhhcceEEcCCCcEEEEecc-ceEEEEecccccCCcee
Confidence 100000 00000000 00111499999999999765 4799999875 555554
No 287
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.32 E-value=0.0047 Score=48.49 Aligned_cols=62 Identities=18% Similarity=0.276 Sum_probs=39.3
Q ss_pred eEeecCCeEEEEECCCCccceeEecCCCCcce-EEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEE
Q 032092 2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQM-RCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTF 70 (147)
Q Consensus 2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i-~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~ 70 (147)
++++.+|.|.-+|..+++..-+ ...+ ..+ ...+ .+++.+++++.+|.+.. +|..+|+.+...
T Consensus 69 ~v~~~~g~v~a~d~~tG~~~W~-~~~~--~~~~~~p~--v~~~~v~v~~~~g~l~a--ld~~tG~~~W~~ 131 (377)
T TIGR03300 69 YAADADGTVVALDAETGKRLWR-VDLD--ERLSGGVG--ADGGLVFVGTEKGEVIA--LDAEDGKELWRA 131 (377)
T ss_pred EEECCCCeEEEEEccCCcEeee-ecCC--CCcccceE--EcCCEEEEEcCCCEEEE--EECCCCcEeeee
Confidence 5667788888899888864322 1111 111 1222 24677888888888887 788778776554
No 288
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.28 E-value=0.00095 Score=49.07 Aligned_cols=59 Identities=24% Similarity=0.235 Sum_probs=36.6
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEE-EEccCCCEEEEEeeCCeEEEEeecCC
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCV-AAFPDQQGFWVGSIEGRVGVHHLDDS 62 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~l-a~spdg~~l~~g~~dg~i~i~~~d~~ 62 (147)
|++|+.+|.|++|+............+ ...+|.++ ..-.++.+..++..||.|+. ++..
T Consensus 73 ~~vG~~dg~v~~~n~n~~g~~~d~~~s-~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~--~n~~ 132 (238)
T KOG2444|consen 73 LMVGTSDGAVYVFNWNLEGAHSDRVCS-GEESIDLGIPNGRDSSLGCVGAQDGRIRA--CNIK 132 (238)
T ss_pred EEeecccceEEEecCCccchHHHhhhc-ccccceeccccccccceeEEeccCCceee--eccc
Confidence 578999999999999854332111211 12234433 22234557789999999999 5553
No 289
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=0.00036 Score=60.71 Aligned_cols=105 Identities=17% Similarity=0.106 Sum_probs=66.9
Q ss_pred cCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeeccc
Q 032092 6 ADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISF 85 (147)
Q Consensus 6 ~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~ 85 (147)
.||....+.++.-.++........+.++..++.--.+..+++|++.|.+.. .|.+.. +.. -|.+....+++.++
T Consensus 63 s~~~~~~~~i~~H~q~~~l~~~~e~~~~~v~s~a~~~~~ivi~Ts~ghvl~--~d~~~n--L~~--~~~ne~v~~~Vtsv 136 (1206)
T KOG2079|consen 63 SDGISSQFFIRRHGQPQVLAVHLEDIAAGVISSAIVVVPIVIGTSHGHVLL--SDMTGN--LGP--LHQNERVQGPVTSV 136 (1206)
T ss_pred ccccccceeeccccchhhhHhhccCCCcceeeeeeeeeeEEEEcCchhhhh--hhhhcc--cch--hhcCCccCCcceee
Confidence 344455555555333221111111223444444344678999999999988 555421 111 25555444577777
Q ss_pred eeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092 86 TSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146 (147)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~ 146 (147)
+|+.||+.++.|-++|.|.+||+..++.++.
T Consensus 137 ------------------------------afn~dg~~l~~G~~~G~V~v~D~~~~k~l~~ 167 (1206)
T KOG2079|consen 137 ------------------------------AFNQDGSLLLAGLGDGHVTVWDMHRAKILKV 167 (1206)
T ss_pred ------------------------------EecCCCceeccccCCCcEEEEEccCCcceee
Confidence 9999999999999999999999999887764
No 290
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.27 E-value=0.0088 Score=48.15 Aligned_cols=56 Identities=14% Similarity=0.192 Sum_probs=34.9
Q ss_pred CCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEE-eeCCeEEEEeecCCCCc
Q 032092 7 DRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVG-SIEGRVGVHHLDDSQQS 65 (147)
Q Consensus 7 dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g-~~dg~i~i~~~d~~~~~ 65 (147)
+..|.++|+.+++. ..+.. ........+|||||+.++.. +.+|.-.||-+|...+.
T Consensus 212 ~~~Iyv~dl~tg~~--~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~ 268 (419)
T PRK04043 212 KPTLYKYNLYTGKK--EKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT 268 (419)
T ss_pred CCEEEEEECCCCcE--EEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence 45799999988753 23322 22345667899999877653 44554445547776543
No 291
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.26 E-value=0.0011 Score=57.86 Aligned_cols=71 Identities=17% Similarity=0.186 Sum_probs=52.3
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEecc
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHR 74 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~ 74 (147)
++.|++.|.|-+.|++..=.+++.-. ....+|+++||+.||..++.|-.+|-|.+ ||..+++....+..|.
T Consensus 102 ivi~Ts~ghvl~~d~~~nL~~~~~ne-~v~~~Vtsvafn~dg~~l~~G~~~G~V~v--~D~~~~k~l~~i~e~~ 172 (1206)
T KOG2079|consen 102 IVIGTSHGHVLLSDMTGNLGPLHQNE-RVQGPVTSVAFNQDGSLLLAGLGDGHVTV--WDMHRAKILKVITEHG 172 (1206)
T ss_pred EEEEcCchhhhhhhhhcccchhhcCC-ccCCcceeeEecCCCceeccccCCCcEEE--EEccCCcceeeeeecC
Confidence 46788889999988876322223222 23468999999999999999999999999 6666566666665444
No 292
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.26 E-value=0.0095 Score=45.89 Aligned_cols=33 Identities=18% Similarity=0.219 Sum_probs=26.6
Q ss_pred EEEEecCCCeEE-EeCCCCcEEEeecCCceeeec
Q 032092 114 IVLFVQIHHTFA-TAGSDGAFNFWDKDSKQRLKV 146 (147)
Q Consensus 114 ~~~fspdg~~la-tg~~Dg~i~iWd~~~~~~~~~ 146 (147)
+++++++|.++| |+-.-+.+.+||..+++++..
T Consensus 221 SIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~ 254 (305)
T PF07433_consen 221 SIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGS 254 (305)
T ss_pred EEEEeCCCCEEEEECCCCCEEEEEECCCCCEeec
Confidence 699999997764 444577899999999988754
No 293
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.24 E-value=0.0016 Score=52.70 Aligned_cols=100 Identities=18% Similarity=0.217 Sum_probs=63.2
Q ss_pred CCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeeccce
Q 032092 7 DRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFT 86 (147)
Q Consensus 7 dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~~ 86 (147)
+..|.++.......+-.+.+ ....++..+++||.|.+|++....| |.+ |+-.....+.++. |.. +..+
T Consensus 10 s~~i~~f~~~~s~~~~~~~~-~~~~p~~~~~~SP~G~~l~~~~~~~-V~~--~~g~~~~~l~~~~-~~~------V~~~- 77 (561)
T COG5354 10 SAVISVFWNSQSEVIHTRFE-SENWPVAYVSESPLGTYLFSEHAAG-VEC--WGGPSKAKLVRFR-HPD------VKYL- 77 (561)
T ss_pred cceEEEeecCcccccccccc-ccCcchhheeecCcchheehhhccc-eEE--ccccchhheeeee-cCC------ceec-
Confidence 34555544443322222232 2457899999999999999877765 556 6655444544554 332 3333
Q ss_pred eeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCC---------------CCcEEEeecCCceeeecC
Q 032092 87 SILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGS---------------DGAFNFWDKDSKQRLKVF 147 (147)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~---------------Dg~i~iWd~~~~~~~~~~ 147 (147)
.|||.+++|.|=+. +..+.+||..++.++.+|
T Consensus 78 -----------------------------~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf 124 (561)
T COG5354 78 -----------------------------DFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSF 124 (561)
T ss_pred -----------------------------ccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeec
Confidence 67777777766533 235999999999998876
No 294
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.20 E-value=0.0019 Score=55.62 Aligned_cols=100 Identities=17% Similarity=0.251 Sum_probs=70.8
Q ss_pred eEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEe
Q 032092 2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCS 81 (147)
Q Consensus 2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~ 81 (147)
+.|+-...+-.+|+++.+. .+...- ....+.-|. .+++.+-+|...|+|.+ .|+++.+.+.+|.+|...
T Consensus 151 i~Gg~Q~~li~~Dl~~~~e-~r~~~v-~a~~v~imR--~Nnr~lf~G~t~G~V~L--rD~~s~~~iht~~aHs~s----- 219 (1118)
T KOG1275|consen 151 IMGGLQEKLIHIDLNTEKE-TRTTNV-SASGVTIMR--YNNRNLFCGDTRGTVFL--RDPNSFETIHTFDAHSGS----- 219 (1118)
T ss_pred eecchhhheeeeeccccee-eeeeec-cCCceEEEE--ecCcEEEeecccceEEe--ecCCcCceeeeeeccccc-----
Confidence 3455566777889998743 222111 111244444 45899999999999999 999999999999999863
Q ss_pred eccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCC---------CCcEEEeecCCceee
Q 032092 82 VISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGS---------DGAFNFWDKDSKQRL 144 (147)
Q Consensus 82 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~---------Dg~i~iWd~~~~~~~ 144 (147)
+. +|.-.|+.|+|||. |..|+|||++.-+.|
T Consensus 220 iS--------------------------------DfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral 259 (1118)
T KOG1275|consen 220 IS--------------------------------DFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRAL 259 (1118)
T ss_pred ee--------------------------------eeeccCCeEEEeecccccccccccchhhhhhhhhhhcc
Confidence 21 67778888888865 667899999875543
No 295
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.16 E-value=0.0009 Score=52.00 Aligned_cols=98 Identities=13% Similarity=0.190 Sum_probs=65.3
Q ss_pred eecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCc-----ceeEEEeccCCce
Q 032092 4 GTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQS-----KNFTFKCHRDGSE 78 (147)
Q Consensus 4 gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~-----~~~~~~~h~~~~~ 78 (147)
.+.+-.|-|-|+.++-+ +.+. .+..|.++.|.-.++.+..|.-.|.|.. +|+|.+. ....+ -|..
T Consensus 230 ~G~sqqv~L~nvetg~~--qsf~--sksDVfAlQf~~s~nLv~~GcRngeI~~--iDLR~rnqG~~~~a~rl-yh~S--- 299 (425)
T KOG2695|consen 230 VGLSQQVLLTNVETGHQ--QSFQ--SKSDVFALQFAGSDNLVFNGCRNGEIFV--IDLRCRNQGNGWCAQRL-YHDS--- 299 (425)
T ss_pred ccccceeEEEEeecccc--cccc--cchhHHHHHhcccCCeeEecccCCcEEE--EEeeecccCCCcceEEE-EcCc---
Confidence 35566788889888743 1222 2345888899888899999999999988 7777431 11111 1222
Q ss_pred EEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEec-CCCeEEEeCCCCcEEEeecCCcee
Q 032092 79 TCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQ-IHHTFATAGSDGAFNFWDKDSKQR 143 (147)
Q Consensus 79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsp-dg~~latg~~Dg~i~iWd~~~~~~ 143 (147)
+++++ ..-. +++.|.+.+++|+|++||.+--++
T Consensus 300 --svtsl------------------------------q~Lq~s~q~LmaS~M~gkikLyD~R~~K~ 333 (425)
T KOG2695|consen 300 --SVTSL------------------------------QILQFSQQKLMASDMTGKIKLYDLRATKC 333 (425)
T ss_pred --chhhh------------------------------hhhccccceEeeccCcCceeEeeehhhhc
Confidence 34444 2222 567889999999999999876555
No 296
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.14 E-value=0.023 Score=37.38 Aligned_cols=53 Identities=23% Similarity=0.360 Sum_probs=40.0
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecC
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDD 61 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~ 61 (147)
|++||+|..||+|+=.+- +..+... ..+.+|+-.+. ..|+.+..+|+|.+ ++.
T Consensus 18 LlvGs~D~~IRvf~~~e~---~~Ei~e~--~~v~~L~~~~~-~~F~Y~l~NGTVGv--Y~~ 70 (111)
T PF14783_consen 18 LLVGSDDFEIRVFKGDEI---VAEITET--DKVTSLCSLGG-GRFAYALANGTVGV--YDR 70 (111)
T ss_pred EEEecCCcEEEEEeCCcE---EEEEecc--cceEEEEEcCC-CEEEEEecCCEEEE--EeC
Confidence 689999999999987653 3334332 35788877665 68999999999999 654
No 297
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.13 E-value=0.0018 Score=36.03 Aligned_cols=29 Identities=21% Similarity=0.304 Sum_probs=26.0
Q ss_pred cceEEEEEccCCCEEEEEeeCCeEEEEeecC
Q 032092 31 YQMRCVAAFPDQQGFWVGSIEGRVGVHHLDD 61 (147)
Q Consensus 31 ~~i~~la~spdg~~l~~g~~dg~i~i~~~d~ 61 (147)
.+|.+++|+|..+.+|.|+.+|.|.| +..
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v--~Rl 40 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLV--YRL 40 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEE--EEC
Confidence 46899999999999999999999999 544
No 298
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.0021 Score=53.26 Aligned_cols=64 Identities=17% Similarity=0.182 Sum_probs=47.1
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceE-EEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMR-CVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFT 69 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~-~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~ 69 (147)
+|++..+|.|-++-+.-+ +. -++..|. .+++ +++|.|||+.+|+|-.||+|+| .|..++..+..
T Consensus 35 iA~~t~~gelli~R~n~q-Rl-wtip~p~-~~v~~sL~W~~DGkllaVg~kdG~I~L--~Dve~~~~l~~ 99 (665)
T KOG4640|consen 35 IATRTEKGELLIHRLNWQ-RL-WTIPIPG-ENVTASLCWRPDGKLLAVGFKDGTIRL--HDVEKGGRLVS 99 (665)
T ss_pred hheeccCCcEEEEEeccc-ee-EeccCCC-CccceeeeecCCCCEEEEEecCCeEEE--EEccCCCceec
Confidence 578888998888887733 32 2333233 3455 9999999999999999999999 77776655443
No 299
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.04 E-value=0.0035 Score=53.21 Aligned_cols=49 Identities=14% Similarity=0.114 Sum_probs=33.6
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEee
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHL 59 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~ 59 (147)
++-|+.+|.|++++.+.- +...+. +. +. .-+|+++++|+.||+|.|-..
T Consensus 52 ~~~GtH~g~v~~~~~~~~--~~~~~~--~s----~~--~~~Gey~asCS~DGkv~I~sl 100 (846)
T KOG2066|consen 52 FALGTHRGAVYLTTCQGN--PKTNFD--HS----SS--ILEGEYVASCSDDGKVVIGSL 100 (846)
T ss_pred eeeccccceEEEEecCCc--cccccc--cc----cc--ccCCceEEEecCCCcEEEeec
Confidence 466889999999998753 211121 11 11 456999999999999999433
No 300
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.03 E-value=0.016 Score=45.31 Aligned_cols=107 Identities=16% Similarity=0.195 Sum_probs=63.0
Q ss_pred CeEeecC----CeEEEEECCCCccceeEecC-CCCcceEEEEEccCCCEEEEEee----CCeEEEEeecCCCCcceeEEE
Q 032092 1 MVVGTAD----RNLVVFNLQNPQTEFKRINS-PLKYQMRCVAAFPDQQGFWVGSI----EGRVGVHHLDDSQQSKNFTFK 71 (147)
Q Consensus 1 l~~gs~d----g~v~iwdi~~~~~~~~~~~~-~~~~~i~~la~spdg~~l~~g~~----dg~i~i~~~d~~~~~~~~~~~ 71 (147)
+.+|+.+ +.|++|++......+..... .......-|+++|++++|.+... +|.|..+.++..+++....-.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 3567666 79999988332211222211 11123567999999999888766 568888666654333221111
Q ss_pred eccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCC-CCcEEEeecCC
Q 032092 72 CHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGS-DGAFNFWDKDS 140 (147)
Q Consensus 72 ~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~-Dg~i~iWd~~~ 140 (147)
...... .+. .++++|++++|+.+.. +|.|.++++.+
T Consensus 82 ~~~~g~---~p~------------------------------~i~~~~~g~~l~vany~~g~v~v~~l~~ 118 (345)
T PF10282_consen 82 VPSGGS---SPC------------------------------HIAVDPDGRFLYVANYGGGSVSVFPLDD 118 (345)
T ss_dssp EEESSS---CEE------------------------------EEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred eccCCC---CcE------------------------------EEEEecCCCEEEEEEccCCeEEEEEccC
Confidence 000000 011 2389999988888764 89999999976
No 301
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.02 E-value=0.013 Score=44.46 Aligned_cols=60 Identities=10% Similarity=0.041 Sum_probs=40.4
Q ss_pred eEeecCCeEEEEECCCC-ccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCC
Q 032092 2 VVGTADRNLVVFNLQNP-QTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQ 63 (147)
Q Consensus 2 ~~gs~dg~v~iwdi~~~-~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~ 63 (147)
++.+....|-.|.+... +...+....+-...=.+.+|+.....||+++.||++.| ||+|.
T Consensus 174 ~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I--~DVR~ 234 (344)
T KOG4532|consen 174 SSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAI--YDVRN 234 (344)
T ss_pred EEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEE--EEecc
Confidence 34455667888888764 22222222222223467899999999999999999999 77775
No 302
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=96.99 E-value=0.044 Score=41.57 Aligned_cols=37 Identities=11% Similarity=0.145 Sum_probs=31.6
Q ss_pred eceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092 110 KSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146 (147)
Q Consensus 110 ~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~ 146 (147)
++.+.++.||||+.||+...+|.|.+|++-+.++.+.
T Consensus 230 d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~ 266 (282)
T PF15492_consen 230 DGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRS 266 (282)
T ss_pred CceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcc
Confidence 5567889999999999999999999999977665543
No 303
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=96.92 E-value=0.042 Score=42.91 Aligned_cols=140 Identities=13% Similarity=0.157 Sum_probs=79.9
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCC----CcceeEEEeccCC
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQ----QSKNFTFKCHRDG 76 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~----~~~~~~~~~h~~~ 76 (147)
+++.+.|.++|||=-+.-.+--..+....-.+.+++++.++...|.+|-..|++.= +.... -..+..+..|...
T Consensus 39 v~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvte--fs~sedfnkm~~~r~~~~h~~~ 116 (404)
T KOG1409|consen 39 VISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTE--FALSEDFNKMTFLKDYLAHQAR 116 (404)
T ss_pred eEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEE--EEhhhhhhhcchhhhhhhhhcc
Confidence 46789999999997665322111221111236899999999999999999999876 33321 1112223334321
Q ss_pred c--eEEeeccceeeeecCCCcce------------------------------------------eeeeeeeeeeeeece
Q 032092 77 S--ETCSVISFTSILAGDAPKYS------------------------------------------SFYKVKRLHLFVKSH 112 (147)
Q Consensus 77 ~--~~~~v~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~~~~~~~~ 112 (147)
. ..+....-..++.|.|..+. .+.+.-.....+.+|
T Consensus 117 v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h 196 (404)
T KOG1409|consen 117 VSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGH 196 (404)
T ss_pred eeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCc
Confidence 1 11111111122223222110 011111223355666
Q ss_pred E----EEEEecCCCeEEEeCCCCcEEEeecCCce
Q 032092 113 V----IVLFVQIHHTFATAGSDGAFNFWDKDSKQ 142 (147)
Q Consensus 113 ~----~~~fspdg~~latg~~Dg~i~iWd~~~~~ 142 (147)
. .++|-|..+.|.+|..|-.+.+||+--++
T Consensus 197 ~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~ 230 (404)
T KOG1409|consen 197 TGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK 230 (404)
T ss_pred ccceEEEEEcCCCcEEEeccccCceEEEeccCCc
Confidence 4 58999999999999999999999986443
No 304
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.90 E-value=0.0021 Score=52.70 Aligned_cols=78 Identities=14% Similarity=0.125 Sum_probs=54.8
Q ss_pred CcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeee
Q 032092 30 KYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFV 109 (147)
Q Consensus 30 ~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (147)
+..-+-+.|||.|.||++=...|.+ + |--.+...+..|. |.. +--+
T Consensus 210 nWTetyv~wSP~GTYL~t~Hk~GI~-l--WGG~~f~r~~RF~-Hp~------Vq~i------------------------ 255 (698)
T KOG2314|consen 210 NWTETYVRWSPKGTYLVTFHKQGIA-L--WGGESFDRIQRFY-HPG------VQFI------------------------ 255 (698)
T ss_pred cceeeeEEecCCceEEEEEecccee-e--ecCccHHHHHhcc-CCC------ceee------------------------
Confidence 3445678999999999998887754 6 6544434444443 442 2122
Q ss_pred eceEEEEEecCCCeEEEeCC----------C-CcEEEeecCCceeeecC
Q 032092 110 KSHVIVLFVQIHHTFATAGS----------D-GAFNFWDKDSKQRLKVF 147 (147)
Q Consensus 110 ~~~~~~~fspdg~~latg~~----------D-g~i~iWd~~~~~~~~~~ 147 (147)
.|||..++|+|=+. + ..++|||+.+|.+.++|
T Consensus 256 ------dfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF 298 (698)
T KOG2314|consen 256 ------DFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSF 298 (698)
T ss_pred ------ecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcce
Confidence 88998888888654 1 47999999999988776
No 305
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=96.89 E-value=0.01 Score=46.76 Aligned_cols=105 Identities=11% Similarity=-0.028 Sum_probs=57.1
Q ss_pred EEEEEccCCCEEEEEeeCCeEEEEeecCCCC--cceeEEEeccCCceEEeecccee-eee-cCCC--cceeeeeeeeeee
Q 032092 34 RCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQ--SKNFTFKCHRDGSETCSVISFTS-ILA-GDAP--KYSSFYKVKRLHL 107 (147)
Q Consensus 34 ~~la~spdg~~l~~g~~dg~i~i~~~d~~~~--~~~~~~~~h~~~~~~~~v~~~~~-~~~-~~~~--~~~~~~~~~~~~~ 107 (147)
..+..+|.++.+|++..+....+++++.+.. +....+..-+.......+..... +.+ +..| .+..+...+....
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~ 145 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCE 145 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcc
Confidence 3456788899999999999988855554321 12222211111100000111111 111 1111 1112222223344
Q ss_pred eeeceEE----EEEecCCCeEEEeCCCCcEEEeec
Q 032092 108 FVKSHVI----VLFVQIHHTFATAGSDGAFNFWDK 138 (147)
Q Consensus 108 ~~~~~~~----~~fspdg~~latg~~Dg~i~iWd~ 138 (147)
-+-||.+ ++|+||+++++|+.-|..|++=..
T Consensus 146 ~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~y 180 (390)
T KOG3914|consen 146 PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRY 180 (390)
T ss_pred hhhhhhhhhheeeecCCCCEEEEecCCceEEEEec
Confidence 5567754 899999999999999999998654
No 306
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.89 E-value=0.00081 Score=55.31 Aligned_cols=79 Identities=19% Similarity=0.376 Sum_probs=57.4
Q ss_pred CCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCC-----CcceeEEEeccCCceEEeeccceeeeecCCCcceeeeee
Q 032092 28 PLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQ-----QSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKV 102 (147)
Q Consensus 28 ~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~-----~~~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 102 (147)
+|+..|+.++--.+.+.|++++.|.++++|.+.+.- ..-.++++.|+. +++++
T Consensus 733 GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk-----~i~~i----------------- 790 (1034)
T KOG4190|consen 733 GHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKK-----PIHDI----------------- 790 (1034)
T ss_pred CcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccC-----cccce-----------------
Confidence 344568888766678899999999999997665431 123456677765 57777
Q ss_pred eeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCcee
Q 032092 103 KRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQR 143 (147)
Q Consensus 103 ~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~ 143 (147)
.|-.|.++++++ ||-|++||---+++
T Consensus 791 -------------gfL~~lr~i~Sc--D~giHlWDPFigr~ 816 (1034)
T KOG4190|consen 791 -------------GFLADLRSIASC--DGGIHLWDPFIGRL 816 (1034)
T ss_pred -------------eeeeccceeeec--cCcceeecccccch
Confidence 788888888875 88999999644443
No 307
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=96.86 E-value=0.0019 Score=49.84 Aligned_cols=80 Identities=18% Similarity=0.157 Sum_probs=51.4
Q ss_pred CCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcc-eeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeee
Q 032092 29 LKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSK-NFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHL 107 (147)
Q Consensus 29 ~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~-~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (147)
|.+.|++|+|+.|.+.++++ .|=+|.+|..+...+.. +...+.|.-+.....+++.
T Consensus 171 H~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSa---------------------- 227 (460)
T COG5170 171 HPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSA---------------------- 227 (460)
T ss_pred ceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhc----------------------
Confidence 34568999999998888774 57889995555433221 1122223221111223444
Q ss_pred eeeceEEEEEecCC-CeEEEeCCCCcEEEeecC
Q 032092 108 FVKSHVIVLFVQIH-HTFATAGSDGAFNFWDKD 139 (147)
Q Consensus 108 ~~~~~~~~~fspdg-~~latg~~Dg~i~iWd~~ 139 (147)
.|||.. +.|.-.++.|.|++=|++
T Consensus 228 --------eFhp~~cn~fmYSsSkG~Ikl~DlR 252 (460)
T COG5170 228 --------EFHPEMCNVFMYSSSKGEIKLNDLR 252 (460)
T ss_pred --------ccCHhHcceEEEecCCCcEEehhhh
Confidence 999975 778888889999999987
No 308
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.76 E-value=0.059 Score=39.74 Aligned_cols=94 Identities=15% Similarity=0.063 Sum_probs=51.9
Q ss_pred CCeEEEEECCCCccc-eeEec-CC-CCcceEEEEEccCCCEEEEEeeC--------CeEEEEeecCCCCcceeEEEeccC
Q 032092 7 DRNLVVFNLQNPQTE-FKRIN-SP-LKYQMRCVAAFPDQQGFWVGSIE--------GRVGVHHLDDSQQSKNFTFKCHRD 75 (147)
Q Consensus 7 dg~v~iwdi~~~~~~-~~~~~-~~-~~~~i~~la~spdg~~l~~g~~d--------g~i~i~~~d~~~~~~~~~~~~h~~ 75 (147)
.+.+.++|..+++.. +.... .. .....+.+++.|+|+.+++.... |.+.. ++.. ++.......-.
T Consensus 59 ~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~--~~~~-~~~~~~~~~~~- 134 (246)
T PF08450_consen 59 SGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR--IDPD-GKVTVVADGLG- 134 (246)
T ss_dssp TTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE--EETT-SEEEEEEEEES-
T ss_pred cCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE--ECCC-CeEEEEecCcc-
Confidence 355667799887431 11111 11 22357899999999977665543 33433 5554 22211111100
Q ss_pred CceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEE-EeCCCCcEEEeecC
Q 032092 76 GSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFA-TAGSDGAFNFWDKD 139 (147)
Q Consensus 76 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~la-tg~~Dg~i~iWd~~ 139 (147)
.++.+ +|+||++.|. +-+..+.|..++..
T Consensus 135 -----~pNGi------------------------------~~s~dg~~lyv~ds~~~~i~~~~~~ 164 (246)
T PF08450_consen 135 -----FPNGI------------------------------AFSPDGKTLYVADSFNGRIWRFDLD 164 (246)
T ss_dssp -----SEEEE------------------------------EEETTSSEEEEEETTTTEEEEEEEE
T ss_pred -----cccce------------------------------EECCcchheeecccccceeEEEecc
Confidence 13344 9999997654 66677888888875
No 309
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=96.75 E-value=0.014 Score=44.25 Aligned_cols=26 Identities=19% Similarity=0.192 Sum_probs=24.1
Q ss_pred EEEecCCCeEEEeCCCCcEEEeecCC
Q 032092 115 VLFVQIHHTFATAGSDGAFNFWDKDS 140 (147)
Q Consensus 115 ~~fspdg~~latg~~Dg~i~iWd~~~ 140 (147)
++||||+.+||-+.+.|+|+++|+..
T Consensus 49 l~WSpD~tlLa~a~S~G~i~vfdl~g 74 (282)
T PF15492_consen 49 LAWSPDCTLLAYAESTGTIRVFDLMG 74 (282)
T ss_pred EEECCCCcEEEEEcCCCeEEEEeccc
Confidence 39999999999999999999999864
No 310
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.69 E-value=0.0064 Score=51.55 Aligned_cols=102 Identities=18% Similarity=0.084 Sum_probs=66.5
Q ss_pred CeEeecCCeEEEEECCCCccc-------------eeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcce
Q 032092 1 MVVGTADRNLVVFNLQNPQTE-------------FKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKN 67 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~-------------~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~ 67 (147)
+|+|+.||.+++--+.+.... +.+...+|+..|..+.|+.+.+.|-+++.+|-|.+ |=...+.=.
T Consensus 29 IAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiV--WmlykgsW~ 106 (1189)
T KOG2041|consen 29 IACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIV--WMLYKGSWC 106 (1189)
T ss_pred EEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEE--EeeecccHH
Confidence 588999999999887664321 01111245667999999999999999999999999 443322111
Q ss_pred eEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEee
Q 032092 68 FTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWD 137 (147)
Q Consensus 68 ~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd 137 (147)
......++. ..|.++ +|+.||+.++-...||.|.+=.
T Consensus 107 EEMiNnRnK---SvV~Sm------------------------------sWn~dG~kIcIvYeDGavIVGs 143 (1189)
T KOG2041|consen 107 EEMINNRNK---SVVVSM------------------------------SWNLDGTKICIVYEDGAVIVGS 143 (1189)
T ss_pred HHHhhCcCc---cEEEEE------------------------------EEcCCCcEEEEEEccCCEEEEe
Confidence 111111221 123444 9999998888888888775543
No 311
>PRK04043 tolB translocation protein TolB; Provisional
Probab=96.66 E-value=0.03 Score=45.08 Aligned_cols=57 Identities=9% Similarity=-0.042 Sum_probs=33.5
Q ss_pred CCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEee-CCeEEEEeecCCCCcc
Q 032092 7 DRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSI-EGRVGVHHLDDSQQSK 66 (147)
Q Consensus 7 dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~-dg~i~i~~~d~~~~~~ 66 (147)
+..|.++|+..++. ..+... ...-..-.|+|||+.++..+. .|.-.||-+|+..++.
T Consensus 256 ~~~Iy~~dl~~g~~--~~LT~~-~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~ 313 (419)
T PRK04043 256 QPDIYLYDTNTKTL--TQITNY-PGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV 313 (419)
T ss_pred CcEEEEEECCCCcE--EEcccC-CCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence 45788889887742 233321 111234579999998776553 4544454477765443
No 312
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.60 E-value=0.0044 Score=34.43 Aligned_cols=30 Identities=17% Similarity=0.181 Sum_probs=26.7
Q ss_pred EEEecCCCeEEEeCCCCcEEEeecCCceeee
Q 032092 115 VLFVQIHHTFATAGSDGAFNFWDKDSKQRLK 145 (147)
Q Consensus 115 ~~fspdg~~latg~~Dg~i~iWd~~~~~~~~ 145 (147)
++|+|...+||.|..||.|.++.+ +++++.
T Consensus 17 ~~w~P~mdLiA~~t~~g~v~v~Rl-~~qriw 46 (47)
T PF12894_consen 17 MSWCPTMDLIALGTEDGEVLVYRL-NWQRIW 46 (47)
T ss_pred EEECCCCCEEEEEECCCeEEEEEC-CCcCcc
Confidence 499999999999999999999998 666654
No 313
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.56 E-value=0.013 Score=48.18 Aligned_cols=94 Identities=9% Similarity=0.080 Sum_probs=63.4
Q ss_pred eEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEee-----------CCeEEEEeecCCCCcceeEEEeccCCc
Q 032092 9 NLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSI-----------EGRVGVHHLDDSQQSKNFTFKCHRDGS 77 (147)
Q Consensus 9 ~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~-----------dg~i~i~~~d~~~~~~~~~~~~h~~~~ 77 (147)
-|.+|.=.+..+ .+++. |. .|.-+.|||+.+||++=+. -..+.| ||+++|.....|..-+...
T Consensus 232 GI~lWGG~~f~r-~~RF~--Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~I--WDI~tG~lkrsF~~~~~~~ 305 (698)
T KOG2314|consen 232 GIALWGGESFDR-IQRFY--HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLII--WDIATGLLKRSFPVIKSPY 305 (698)
T ss_pred ceeeecCccHHH-HHhcc--CC-CceeeecCCccceEEEecCCccccCcccCCCceEEE--EEccccchhcceeccCCCc
Confidence 466776555433 23332 22 3889999999999998432 245777 8999999988887543321
Q ss_pred eEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCc
Q 032092 78 ETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSK 141 (147)
Q Consensus 78 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~ 141 (147)
+..++ +-||.|++++|.-..|+ |.|++..+.
T Consensus 306 ---~~WP~-----------------------------frWS~DdKy~Arm~~~s-isIyEtpsf 336 (698)
T KOG2314|consen 306 ---LKWPI-----------------------------FRWSHDDKYFARMTGNS-ISIYETPSF 336 (698)
T ss_pred ---cccce-----------------------------EEeccCCceeEEeccce-EEEEecCce
Confidence 22222 28999999999887754 888887653
No 314
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.54 E-value=0.029 Score=43.26 Aligned_cols=80 Identities=16% Similarity=0.166 Sum_probs=54.3
Q ss_pred EEEEEcc-CCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeece
Q 032092 34 RCVAAFP-DQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSH 112 (147)
Q Consensus 34 ~~la~sp-dg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (147)
..++.+| .+..++.+---|+-.+ -||.++++....+..... .+|+||
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~-v~D~~~g~~~~~~~a~~g-------------------------------RHFyGH 55 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFAL-VFDCRTGQLLQRLWAPPG-------------------------------RHFYGH 55 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEE-EEEcCCCceeeEEcCCCC-------------------------------CEEecC
Confidence 3678888 4667777877787654 488888877665543211 122222
Q ss_pred EEEEEecCCCeEEEeCC-----CCcEEEeecC-CceeeecC
Q 032092 113 VIVLFVQIHHTFATAGS-----DGAFNFWDKD-SKQRLKVF 147 (147)
Q Consensus 113 ~~~~fspdg~~latg~~-----Dg~i~iWd~~-~~~~~~~~ 147 (147)
-+|||||++|.|.-+ .|.|-|||.. +-+++.+|
T Consensus 56 --g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~ 94 (305)
T PF07433_consen 56 --GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEF 94 (305)
T ss_pred --EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEe
Confidence 289999999888644 4799999998 55666554
No 315
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.52 E-value=0.043 Score=36.10 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=24.8
Q ss_pred eEEEEEcc-C--C-CEEEEEeeCCeEEEEeecCCCCcceeEEE
Q 032092 33 MRCVAAFP-D--Q-QGFWVGSIEGRVGVHHLDDSQQSKNFTFK 71 (147)
Q Consensus 33 i~~la~sp-d--g-~~l~~g~~dg~i~i~~~d~~~~~~~~~~~ 71 (147)
|++|++.+ | | +.|++|+.|..|++ |+-. ..+.+++
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRv--f~~~--e~~~Ei~ 40 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRV--FKGD--EIVAEIT 40 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEE--EeCC--cEEEEEe
Confidence 67787766 3 3 57999999999999 7543 3444444
No 316
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=96.46 E-value=0.064 Score=41.85 Aligned_cols=101 Identities=18% Similarity=0.184 Sum_probs=63.4
Q ss_pred CCeEEEEECCCCccceeEecC-CCCcceEEEEEccCCCEEEEEee---CCeEEEEeecCCCCcceeEEEeccCCceEEee
Q 032092 7 DRNLVVFNLQNPQTEFKRINS-PLKYQMRCVAAFPDQQGFWVGSI---EGRVGVHHLDDSQQSKNFTFKCHRDGSETCSV 82 (147)
Q Consensus 7 dg~v~iwdi~~~~~~~~~~~~-~~~~~i~~la~spdg~~l~~g~~---dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v 82 (147)
++-|++|++.+.+........ ......+-|+|+|+++.|.++.. +|.|.-+.||.++|+.. +..+.... .-+.
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt--~ln~~~~~-g~~p 91 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLT--FLNRQTLP-GSPP 91 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEE--EeeccccC-CCCC
Confidence 467999999853321111110 11234688999999988877654 57788888888766553 22221100 0011
Q ss_pred ccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCC-CCcEEEeecCC
Q 032092 83 ISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGS-DGAFNFWDKDS 140 (147)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~-Dg~i~iWd~~~ 140 (147)
. .++.+++|++++++.. -|.|.++.+++
T Consensus 92 ~------------------------------yvsvd~~g~~vf~AnY~~g~v~v~p~~~ 120 (346)
T COG2706 92 C------------------------------YVSVDEDGRFVFVANYHSGSVSVYPLQA 120 (346)
T ss_pred e------------------------------EEEECCCCCEEEEEEccCceEEEEEccc
Confidence 2 3499999999988877 57899999865
No 317
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.44 E-value=0.028 Score=48.60 Aligned_cols=98 Identities=14% Similarity=0.115 Sum_probs=60.9
Q ss_pred eEeecCCeEEEEECCCC-ccceeE--ecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCccee-EEEeccCCc
Q 032092 2 VVGTADRNLVVFNLQNP-QTEFKR--INSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNF-TFKCHRDGS 77 (147)
Q Consensus 2 ~~gs~dg~v~iwdi~~~-~~~~~~--~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~-~~~~h~~~~ 77 (147)
.+|-.++.+..||.|-. .+.+.. .....+...+|+|-+.+| +||+|+.+|.||| +|. .++.-. .|.+-.
T Consensus 546 flGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRL--yd~-~g~~AKT~lp~lG--- 618 (794)
T PF08553_consen 546 FLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRL--YDR-LGKRAKTALPGLG--- 618 (794)
T ss_pred EEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEe--ecc-cchhhhhcCCCCC---
Confidence 46778899999999974 332210 011122346788888776 8999999999999 663 232211 122211
Q ss_pred eEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecC
Q 032092 78 ETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKD 139 (147)
Q Consensus 78 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~ 139 (147)
-|+..+ .-+.||+++++- .+..+.|.++.
T Consensus 619 --~pI~~i------------------------------Dvt~DGkwilaT-c~tyLlLi~t~ 647 (794)
T PF08553_consen 619 --DPIIGI------------------------------DVTADGKWILAT-CKTYLLLIDTL 647 (794)
T ss_pred --CCeeEE------------------------------EecCCCcEEEEe-ecceEEEEEEe
Confidence 134444 889999875443 36788888863
No 318
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.37 E-value=0.033 Score=44.87 Aligned_cols=45 Identities=20% Similarity=0.101 Sum_probs=39.0
Q ss_pred ceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCce
Q 032092 32 QMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE 78 (147)
Q Consensus 32 ~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~ 78 (147)
.+.+|+.+|++++.|+.+.=|+|.| +|+.++..+..++|-++...
T Consensus 309 ~~~~i~~sP~~~laA~tDslGRV~L--iD~~~~~vvrmWKGYRdAqc 353 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVTDSLGRVLL--IDVARGIVVRMWKGYRDAQC 353 (415)
T ss_pred eEEEEEECCCCCEEEEEcCCCcEEE--EECCCChhhhhhccCccceE
Confidence 4788999999999999888999999 99988888888898887543
No 319
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.37 E-value=0.032 Score=46.88 Aligned_cols=106 Identities=15% Similarity=0.118 Sum_probs=63.8
Q ss_pred CCeEEEEECCC----CccceeEecCCCCcceEEEEEccCCCEEE-EEeeCCeEEEEeecCCCCcceeEEEeccCCceEEe
Q 032092 7 DRNLVVFNLQN----PQTEFKRINSPLKYQMRCVAAFPDQQGFW-VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCS 81 (147)
Q Consensus 7 dg~v~iwdi~~----~~~~~~~~~~~~~~~i~~la~spdg~~l~-~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~ 81 (147)
+++|.+.|.++ +.+....+..+ .....+++||||++++ ++..++++.+ +|.++.+.. |.+ +..
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPVG--KsPHGV~vSPDGkylyVanklS~tVSV--IDv~k~k~~--~~~-~~~----- 362 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPVP--KNPHGVNTSPDGKYFIANGKLSPTVTV--IDVRKLDDL--FDG-KIK----- 362 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEECC--CCccceEECCCCCEEEEeCCCCCcEEE--EEChhhhhh--hhc-cCC-----
Confidence 46799999998 32333333322 2357899999999865 5566999999 777643321 110 000
Q ss_pred eccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCC
Q 032092 82 VISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDS 140 (147)
Q Consensus 82 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~ 140 (147)
..+. +...+..-.+.+..+|.++|+...|---|..|..||+++
T Consensus 363 ~~~~----------------vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 363 PRDA----------------VVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ccce----------------EEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 0000 000011112223349999999888888899999999875
No 320
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=96.33 E-value=0.034 Score=48.30 Aligned_cols=131 Identities=8% Similarity=0.031 Sum_probs=73.5
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCe---------EEEEeecCCCCcceeEEE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGR---------VGVHHLDDSQQSKNFTFK 71 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~---------i~i~~~d~~~~~~~~~~~ 71 (147)
|.+|...|+|-+-|.++.+ +.+++. .|...|.++.. .|+.|++++-.++ |++ ||+|.-+.+..+.
T Consensus 190 lf~G~t~G~V~LrD~~s~~-~iht~~-aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkV--YDLRmmral~PI~ 263 (1118)
T KOG1275|consen 190 LFCGDTRGTVFLRDPNSFE-TIHTFD-AHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKV--YDLRMMRALSPIQ 263 (1118)
T ss_pred EEeecccceEEeecCCcCc-eeeeee-ccccceeeeec--cCCeEEEeecccccccccccchhhh--hhhhhhhccCCcc
Confidence 3578889999999999985 456664 45555665554 4999998775554 566 6666433332222
Q ss_pred eccCCce-EE--eeccceeeee--cCCCcce---eeeeeeeeeee---eeceEEEEEecCCCeEEEeCCCCcEEEee
Q 032092 72 CHRDGSE-TC--SVISFTSILA--GDAPKYS---SFYKVKRLHLF---VKSHVIVLFVQIHHTFATAGSDGAFNFWD 137 (147)
Q Consensus 72 ~h~~~~~-~~--~v~~~~~~~~--~~~~~~~---~~~~~~~~~~~---~~~~~~~~fspdg~~latg~~Dg~i~iWd 137 (147)
-+..... -+ ...+...|++ |....+. .-.+..+...+ -++...+.+|+.|+.+|-|..+|.|.+|-
T Consensus 264 ~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 264 FPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 2211100 00 0111112222 1111111 11111122111 13345679999999999999999999997
No 321
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.32 E-value=0.058 Score=42.76 Aligned_cols=60 Identities=22% Similarity=0.243 Sum_probs=37.9
Q ss_pred eEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeE
Q 032092 2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFT 69 (147)
Q Consensus 2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~ 69 (147)
.+++.+|.+.-+|+++++..-+. . .. ....++ .+++.+.+++.+|.+.. +|..+++.+..
T Consensus 260 y~~~~~g~l~ald~~tG~~~W~~-~--~~-~~~~~~--~~~~~vy~~~~~g~l~a--ld~~tG~~~W~ 319 (394)
T PRK11138 260 YALAYNGNLVALDLRSGQIVWKR-E--YG-SVNDFA--VDGGRIYLVDQNDRVYA--LDTRGGVELWS 319 (394)
T ss_pred EEEEcCCeEEEEECCCCCEEEee-c--CC-CccCcE--EECCEEEEEcCCCeEEE--EECCCCcEEEc
Confidence 35567888999999988643221 1 11 111222 23667777888999888 88887766543
No 322
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.19 E-value=0.015 Score=49.36 Aligned_cols=89 Identities=12% Similarity=0.220 Sum_probs=58.3
Q ss_pred CCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeee
Q 032092 27 SPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLH 106 (147)
Q Consensus 27 ~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 106 (147)
.|......|++|+.+..++|+|+.||.+++ +.+.+...-...++-.. +..+ .++
T Consensus 11 iPnnvkL~c~~WNke~gyIAcgG~dGlLKV--lKl~t~t~d~~~~glaa------~snL------------------smN 64 (1189)
T KOG2041|consen 11 IPNNVKLHCAEWNKESGYIACGGADGLLKV--LKLGTDTTDLNKSGLAA------ASNL------------------SMN 64 (1189)
T ss_pred CCCCceEEEEEEcccCCeEEeccccceeEE--EEccccCCccccccccc------cccc------------------chh
Confidence 344567899999999999999999999999 55443222111111000 0111 112
Q ss_pred eeeeceE----EEEEecCCCeEEEeCCCCcEEEeecCCc
Q 032092 107 LFVKSHV----IVLFVQIHHTFATAGSDGAFNFWDKDSK 141 (147)
Q Consensus 107 ~~~~~~~----~~~fspdg~~latg~~Dg~i~iWd~~~~ 141 (147)
+.+.||. .+.|+...+.|-|...+|.|.+|=+=++
T Consensus 65 QtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykg 103 (1189)
T KOG2041|consen 65 QTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKG 103 (1189)
T ss_pred hhhccCcceEEEEEeccccccccccCCCceEEEEeeecc
Confidence 3345553 2589999899999999999999976444
No 323
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.18 E-value=0.042 Score=44.40 Aligned_cols=55 Identities=15% Similarity=0.114 Sum_probs=38.2
Q ss_pred CeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEE-EEeeCCeEEEEeecCCCCc
Q 032092 8 RNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFW-VGSIEGRVGVHHLDDSQQS 65 (147)
Q Consensus 8 g~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~-~g~~dg~i~i~~~d~~~~~ 65 (147)
..+.++|+.+++.+. ..... ..-..-+|||||+.++ +...||...||-+|...+.
T Consensus 218 ~~i~~~~l~~g~~~~-i~~~~--g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~ 273 (425)
T COG0823 218 PRIYYLDLNTGKRPV-ILNFN--GNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN 273 (425)
T ss_pred ceEEEEeccCCccce-eeccC--CccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc
Confidence 358899999986542 22211 2234568999999876 5567899888888887544
No 324
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.10 E-value=0.1 Score=43.97 Aligned_cols=30 Identities=13% Similarity=-0.028 Sum_probs=23.7
Q ss_pred EEEEEecCCCeEEEeCC-CCcEEEeecCCce
Q 032092 113 VIVLFVQIHHTFATAGS-DGAFNFWDKDSKQ 142 (147)
Q Consensus 113 ~~~~fspdg~~latg~~-Dg~i~iWd~~~~~ 142 (147)
-.++++|||++++.++. +.+|-|.|+++.+
T Consensus 324 HGV~vSPDGkylyVanklS~tVSVIDv~k~k 354 (635)
T PRK02888 324 HGVNTSPDGKYFIANGKLSPTVTVIDVRKLD 354 (635)
T ss_pred cceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence 35799999987655554 8899999998755
No 325
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.06 E-value=0.051 Score=47.21 Aligned_cols=129 Identities=13% Similarity=0.048 Sum_probs=80.2
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCccee-EEEeccCCc--
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNF-TFKCHRDGS-- 77 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~-~~~~h~~~~-- 77 (147)
|+.|-+-|.+.+|..++.+ .++...+|..+|.-+.|||+|..+.++..-|.+.+|.+|.. |+... ++-.|....
T Consensus 74 La~gwe~g~~~v~~~~~~e--~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~-g~~q~~~~~~hel~~~l 150 (1416)
T KOG3617|consen 74 LAQGWEMGVSDVQKTNTTE--THTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVI-GEIQTSNIMQHELNDQL 150 (1416)
T ss_pred HhhccccceeEEEecCCce--eeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeec-cccccchhhhhHhhcee
Confidence 4677788999999988754 45666677788999999999999999999999999988865 22111 111122110
Q ss_pred --eEE--eec-----cceeeee-cCCCcce---eeee-e-eeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecC
Q 032092 78 --ETC--SVI-----SFTSILA-GDAPKYS---SFYK-V-KRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKD 139 (147)
Q Consensus 78 --~~~--~v~-----~~~~~~~-~~~~~~~---~~~~-~-~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~ 139 (147)
.++ ++. .+.+.+. |++.+.. .+++ + ++...+ .=.|+|..|..++.+|+|+--|-+
T Consensus 151 tl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~k-------sgv~~g~~F~~~~~~GtVyyvdq~ 220 (1416)
T KOG3617|consen 151 TLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEK-------SGVPKGTEFLFAGKSGTVYYVDQN 220 (1416)
T ss_pred eEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccccc-------cCCCCCcEEEEEcCCceEEEEcCC
Confidence 011 111 1122333 4443322 2331 1 010000 346899899999999999988843
No 326
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.02 E-value=0.19 Score=39.85 Aligned_cols=67 Identities=10% Similarity=0.084 Sum_probs=41.4
Q ss_pred eEeecCCeEEEEECCCCccceeEecCCCCcce-E-----EEEEcc--CCCEEEEEeeCCeEEEEeecCCCCcceeEEE
Q 032092 2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQM-R-----CVAAFP--DQQGFWVGSIEGRVGVHHLDDSQQSKNFTFK 71 (147)
Q Consensus 2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i-~-----~la~sp--dg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~ 71 (147)
.+++.+|.+.-+|.++++..-+. ........ . -+.-+| +++.+.+++.+|.+.. +|..+|+.+.+.+
T Consensus 73 y~~~~~g~l~ald~~tG~~~W~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~a--ld~~tG~~~W~~~ 147 (394)
T PRK11138 73 YAADRAGLVKALDADTGKEIWSV-DLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYA--LNAEDGEVAWQTK 147 (394)
T ss_pred EEECCCCeEEEEECCCCcEeeEE-cCCCcccccccccccccccccEEECCEEEEEcCCCEEEE--EECCCCCCccccc
Confidence 45677888999999998753221 11110000 0 011112 3667788889999988 8998898887664
No 327
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.00 E-value=0.095 Score=46.77 Aligned_cols=53 Identities=9% Similarity=0.072 Sum_probs=39.6
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGV 56 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i 56 (147)
+..+..+|.|-+-|..+... ... ......|.+++||||++.++..+.++++.+
T Consensus 83 i~v~~~~G~iilvd~et~~~--eiv-g~vd~GI~aaswS~Dee~l~liT~~~tll~ 135 (1265)
T KOG1920|consen 83 ICVITALGDIILVDPETLEL--EIV-GNVDNGISAASWSPDEELLALITGRQTLLF 135 (1265)
T ss_pred EEEEecCCcEEEEcccccce--eee-eeccCceEEEeecCCCcEEEEEeCCcEEEE
Confidence 35677889999998888642 222 112346999999999999999998888865
No 328
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=95.97 E-value=0.1 Score=38.48 Aligned_cols=80 Identities=18% Similarity=0.182 Sum_probs=47.7
Q ss_pred eEEEEEccCCCEEE-EEeeCCeEEEEeecCCCCcce--eEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeee
Q 032092 33 MRCVAAFPDQQGFW-VGSIEGRVGVHHLDDSQQSKN--FTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFV 109 (147)
Q Consensus 33 i~~la~spdg~~l~-~g~~dg~i~i~~~d~~~~~~~--~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (147)
.+.|+|+||++.|. +-+..+.|..++++....+.. ..+...... . ..+..+
T Consensus 136 pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~-g~pDG~------------------------ 189 (246)
T PF08450_consen 136 PNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGG-P-GYPDGL------------------------ 189 (246)
T ss_dssp EEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSS-S-CEEEEE------------------------
T ss_pred ccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCC-C-cCCCcc------------------------
Confidence 57899999998765 566788887755554332111 112111110 0 012333
Q ss_pred eceEEEEEecCCCeEEEeCCCCcEEEeecCCceeee
Q 032092 110 KSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLK 145 (147)
Q Consensus 110 ~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~ 145 (147)
++.++|++.++.-..+.|.++|-+ ++++.
T Consensus 190 ------~vD~~G~l~va~~~~~~I~~~~p~-G~~~~ 218 (246)
T PF08450_consen 190 ------AVDSDGNLWVADWGGGRIVVFDPD-GKLLR 218 (246)
T ss_dssp ------EEBTTS-EEEEEETTTEEEEEETT-SCEEE
T ss_pred ------eEcCCCCEEEEEcCCCEEEEECCC-ccEEE
Confidence 888888887777777888888876 66654
No 329
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.81 E-value=0.36 Score=37.17 Aligned_cols=101 Identities=18% Similarity=0.222 Sum_probs=58.7
Q ss_pred EeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEee
Q 032092 3 VGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSV 82 (147)
Q Consensus 3 ~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v 82 (147)
+++.+++|.+|++...+.....-.......+.++... ++++++|+.-..+.++.|+... ..+..+...... ..+
T Consensus 102 v~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~-~~l~~va~d~~~---~~v 175 (321)
T PF03178_consen 102 VVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEEN-NKLILVARDYQP---RWV 175 (321)
T ss_dssp EEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTT-E-EEEEEEESS----BEE
T ss_pred EEeecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccC-CEEEEEEecCCC---ccE
Confidence 4566799999999987622221111111245555544 7799999999999987677632 222222111100 012
Q ss_pred ccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecC
Q 032092 83 ISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKD 139 (147)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~ 139 (147)
.+ +.|-+|++.++.+..+|.+.++...
T Consensus 176 ~~------------------------------~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 176 TA------------------------------AEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EE------------------------------EEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EE------------------------------EEEecCCcEEEEEcCCCeEEEEEEC
Confidence 22 2677666788888889998888765
No 330
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.80 E-value=0.14 Score=39.67 Aligned_cols=29 Identities=24% Similarity=0.319 Sum_probs=22.7
Q ss_pred eEEEEEccCCCEEEEEee-CCeEEEEeecC
Q 032092 33 MRCVAAFPDQQGFWVGSI-EGRVGVHHLDD 61 (147)
Q Consensus 33 i~~la~spdg~~l~~g~~-dg~i~i~~~d~ 61 (147)
-+.||||||++.|....+ .+.|.-+++|.
T Consensus 165 ~NGla~SpDg~tly~aDT~~~~i~r~~~d~ 194 (307)
T COG3386 165 PNGLAFSPDGKTLYVADTPANRIHRYDLDP 194 (307)
T ss_pred cCceEECCCCCEEEEEeCCCCeEEEEecCc
Confidence 578999999988777665 47887766774
No 331
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=95.77 E-value=0.7 Score=36.21 Aligned_cols=101 Identities=11% Similarity=0.147 Sum_probs=61.3
Q ss_pred cCCeEEEEECCCCccceeEec---C-C----CCcceEEEEEccCCCEEEEEee-CCeEEEEeecCCCCcceeEEEeccCC
Q 032092 6 ADRNLVVFNLQNPQTEFKRIN---S-P----LKYQMRCVAAFPDQQGFWVGSI-EGRVGVHHLDDSQQSKNFTFKCHRDG 76 (147)
Q Consensus 6 ~dg~v~iwdi~~~~~~~~~~~---~-~----~~~~i~~la~spdg~~l~~g~~-dg~i~i~~~d~~~~~~~~~~~~h~~~ 76 (147)
-+++|-+|........+..++ . + .....-+|.++|||++|.++.- ...|.++.+|...++. ++.+....
T Consensus 211 L~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L--~~~~~~~t 288 (346)
T COG2706 211 LNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKL--ELVGITPT 288 (346)
T ss_pred cCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEE--EEEEEecc
Confidence 377888888876322222221 1 1 1234678999999999877643 4577776667665543 23222211
Q ss_pred ceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCC-cEEEeecC
Q 032092 77 SETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDG-AFNFWDKD 139 (147)
Q Consensus 77 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg-~i~iWd~~ 139 (147)
+...+... .|+|+|++|+.++.|+ .|.++-.+
T Consensus 289 -eg~~PR~F------------------------------~i~~~g~~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 289 -EGQFPRDF------------------------------NINPSGRFLIAANQKSDNITVFERD 321 (346)
T ss_pred -CCcCCccc------------------------------eeCCCCCEEEEEccCCCcEEEEEEc
Confidence 00113444 8999999999998875 57777653
No 332
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=95.77 E-value=0.013 Score=50.71 Aligned_cols=72 Identities=13% Similarity=0.191 Sum_probs=49.6
Q ss_pred ceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeec
Q 032092 32 QMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKS 111 (147)
Q Consensus 32 ~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (147)
.+.+++|+|..-.|+.|=.-|.+.+ |...+.+.......|+ .++..+
T Consensus 61 hatSLCWHpe~~vLa~gwe~g~~~v--~~~~~~e~htv~~th~-----a~i~~l-------------------------- 107 (1416)
T KOG3617|consen 61 HATSLCWHPEEFVLAQGWEMGVSDV--QKTNTTETHTVVETHP-----APIQGL-------------------------- 107 (1416)
T ss_pred ehhhhccChHHHHHhhccccceeEE--EecCCceeeeeccCCC-----CCceeE--------------------------
Confidence 3678999998778888888888888 5443211111111232 133333
Q ss_pred eEEEEEecCCCeEEEeCCCCcEEEeecCC
Q 032092 112 HVIVLFVQIHHTFATAGSDGAFNFWDKDS 140 (147)
Q Consensus 112 ~~~~~fspdg~~latg~~Dg~i~iWd~~~ 140 (147)
.|||+|+.|.|+..=|.+.+|-...
T Consensus 108 ----~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 108 ----DWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred ----EecCCCCeEEEcCCCceeEEEEeee
Confidence 9999999999999999999998753
No 333
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.76 E-value=0.25 Score=37.58 Aligned_cols=105 Identities=15% Similarity=0.112 Sum_probs=72.3
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETC 80 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~ 80 (147)
++.|+..+.+.--|.++++..-+.+. ...+.+-|+- -|++++.|.-.|.+++ ++..+|.....|+....
T Consensus 26 v~igSHs~~~~avd~~sG~~~We~il---g~RiE~sa~v-vgdfVV~GCy~g~lYf--l~~~tGs~~w~f~~~~~----- 94 (354)
T KOG4649|consen 26 VVIGSHSGIVIAVDPQSGNLIWEAIL---GVRIECSAIV-VGDFVVLGCYSGGLYF--LCVKTGSQIWNFVILET----- 94 (354)
T ss_pred EEEecCCceEEEecCCCCcEEeehhh---CceeeeeeEE-ECCEEEEEEccCcEEE--EEecchhheeeeeehhh-----
Confidence 35678888888889998864222221 1123332221 4889999999999987 88888877776653211
Q ss_pred eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092 81 SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146 (147)
Q Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~ 146 (147)
+-. +...-|++..+..|+-|++.+.-|.++..+++.
T Consensus 95 -vk~-----------------------------~a~~d~~~glIycgshd~~~yalD~~~~~cVyk 130 (354)
T KOG4649|consen 95 -VKV-----------------------------RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYK 130 (354)
T ss_pred -hcc-----------------------------ceEEcCCCceEEEecCCCcEEEecccccceEEe
Confidence 111 115668899999999999999999998887763
No 334
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.74 E-value=0.29 Score=40.16 Aligned_cols=68 Identities=18% Similarity=0.215 Sum_probs=39.8
Q ss_pred eEeecCCeEEEEECCCCccceeEecCCCCc-ceEEEEEcc--CCCEEEEEee---------CCeEEEEeecCCCCcceeE
Q 032092 2 VVGTADRNLVVFNLQNPQTEFKRINSPLKY-QMRCVAAFP--DQQGFWVGSI---------EGRVGVHHLDDSQQSKNFT 69 (147)
Q Consensus 2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~-~i~~la~sp--dg~~l~~g~~---------dg~i~i~~~d~~~~~~~~~ 69 (147)
+.++.+|.|+-+|.++++..-+ ....... .-..+.-+| .+..+++|+. +|.+.. +|..+|+.+..
T Consensus 114 ~v~~~~g~v~AlD~~TG~~~W~-~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~a--lD~~TG~~~W~ 190 (488)
T cd00216 114 FFGTFDGRLVALDAETGKQVWK-FGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRA--YDVETGKLLWR 190 (488)
T ss_pred EEecCCCeEEEEECCCCCEeee-ecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEE--EECCCCceeeE
Confidence 4567889999999999975322 2111110 000112222 1355556653 567766 89999998887
Q ss_pred EEe
Q 032092 70 FKC 72 (147)
Q Consensus 70 ~~~ 72 (147)
+..
T Consensus 191 ~~~ 193 (488)
T cd00216 191 FYT 193 (488)
T ss_pred eec
Confidence 754
No 335
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.71 E-value=0.36 Score=39.31 Aligned_cols=129 Identities=13% Similarity=0.092 Sum_probs=51.7
Q ss_pred CeEEEEECCCCc-----c----ceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCce
Q 032092 8 RNLVVFNLQNPQ-----T----EFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE 78 (147)
Q Consensus 8 g~v~iwdi~~~~-----~----~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~ 78 (147)
..|+.+|+++.. . +.+.+. ......++|+++|+|+.+++ ..||...| +.....+.... +... ..
T Consensus 2 ~~i~~~~~~~~~~~~dg~~~~l~~k~lg-~~~~~p~~ls~npngr~v~V-~g~geY~i--yt~~~~r~k~~--G~g~-~~ 74 (443)
T PF04053_consen 2 NEIRTANLKNISEIKDGERLPLSVKELG-SCEIYPQSLSHNPNGRFVLV-CGDGEYEI--YTALAWRNKAF--GSGL-SF 74 (443)
T ss_dssp TEEEEEE--S-----TTS-B----EEEE-E-SS--SEEEE-TTSSEEEE-EETTEEEE--EETTTTEEEEE--EE-S-EE
T ss_pred CceEEEECcCCCccCCCceeeEEeccCC-CCCcCCeeEEECCCCCEEEE-EcCCEEEE--EEccCCccccc--Ccee-EE
Confidence 468888888761 1 111111 11234689999999999999 55677777 44322222211 1111 11
Q ss_pred EEeeccceeeeecCCCcceeeeeeeeee-eeeeceEEE-EEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092 79 TCSVISFTSILAGDAPKYSSFYKVKRLH-LFVKSHVIV-LFVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146 (147)
Q Consensus 79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~fspdg~~latg~~Dg~i~iWd~~~~~~~~~ 146 (147)
+|.......+. .+...+.++++.+... ..+.-..++ ...+ |++|+..+.+ .|.+||.++++.+++
T Consensus 75 vw~~~n~yAv~-~~~~~I~I~kn~~~~~~k~i~~~~~~~~If~-G~LL~~~~~~-~i~~yDw~~~~~i~~ 141 (443)
T PF04053_consen 75 VWSSRNRYAVL-ESSSTIKIYKNFKNEVVKSIKLPFSVEKIFG-GNLLGVKSSD-FICFYDWETGKLIRR 141 (443)
T ss_dssp EE-TSSEEEEE--TTS-EEEEETTEE-TT-----SS-EEEEE--SSSEEEEETT-EEEEE-TTT--EEEE
T ss_pred EEecCccEEEE-ECCCeEEEEEcCccccceEEcCCcccceEEc-CcEEEEECCC-CEEEEEhhHcceeeE
Confidence 22221111111 1123344444332211 111111000 1111 7776666544 788888888877754
No 336
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.70 E-value=0.014 Score=50.65 Aligned_cols=43 Identities=23% Similarity=0.411 Sum_probs=38.0
Q ss_pred ceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCC
Q 032092 32 QMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDG 76 (147)
Q Consensus 32 ~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~ 76 (147)
.-+|++|+-+.+.|++|+-.|.|++ ++..+|.......||...
T Consensus 1103 ~fTc~afs~~~~hL~vG~~~Geik~--~nv~sG~~e~s~ncH~Sa 1145 (1516)
T KOG1832|consen 1103 LFTCIAFSGGTNHLAVGSHAGEIKI--FNVSSGSMEESVNCHQSA 1145 (1516)
T ss_pred ceeeEEeecCCceEEeeeccceEEE--EEccCccccccccccccc
Confidence 4689999999999999999999999 888888888888888753
No 337
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.69 E-value=0.041 Score=47.02 Aligned_cols=107 Identities=19% Similarity=0.291 Sum_probs=64.6
Q ss_pred EeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCC--CEEEEEeeCCeEEEEeecCCC-CcceeEEEeccCCceE
Q 032092 3 VGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQ--QGFWVGSIEGRVGVHHLDDSQ-QSKNFTFKCHRDGSET 79 (147)
Q Consensus 3 ~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg--~~l~~g~~dg~i~i~~~d~~~-~~~~~~~~~h~~~~~~ 79 (147)
.|+.-| +.+-|+..+-.|..-+..---.++-.+.|+|.. .+-++......-.+|++-..+ ......+.+|..
T Consensus 41 lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsr---- 115 (1081)
T KOG0309|consen 41 LASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSR---- 115 (1081)
T ss_pred hhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCcc----
Confidence 334434 456677664333332221111457788898863 455555555555575554333 333444556654
Q ss_pred EeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCC-CeEEEeCCCCcEEEeecCCc-eeee
Q 032092 80 CSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIH-HTFATAGSDGAFNFWDKDSK-QRLK 145 (147)
Q Consensus 80 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg-~~latg~~Dg~i~iWd~~~~-~~~~ 145 (147)
.+..+ .|+|.. -.+||++.|-.+..||+++. ..++
T Consensus 116 -aitd~------------------------------n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~y 152 (1081)
T KOG0309|consen 116 -AITDI------------------------------NFNPQHPDVLATCSVDTYVHAWDMRSPHRPFY 152 (1081)
T ss_pred -ceecc------------------------------ccCCCCCcceeeccccccceeeeccCCCccee
Confidence 46666 899987 57999999999999999874 3343
No 338
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=95.68 E-value=0.024 Score=48.94 Aligned_cols=56 Identities=11% Similarity=0.144 Sum_probs=40.6
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecC
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDD 61 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~ 61 (147)
||+|+.+|.|||||- .+.+. ++...+...||..|..+.||+++++ +.+..+.| +++
T Consensus 591 iavgs~~G~IRLyd~-~g~~A-KT~lp~lG~pI~~iDvt~DGkwila-Tc~tyLlL--i~t 646 (794)
T PF08553_consen 591 IAVGSNKGDIRLYDR-LGKRA-KTALPGLGDPIIGIDVTADGKWILA-TCKTYLLL--IDT 646 (794)
T ss_pred EEEEeCCCcEEeecc-cchhh-hhcCCCCCCCeeEEEecCCCcEEEE-eecceEEE--EEE
Confidence 689999999999994 44332 2332344579999999999998765 44577777 554
No 339
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.62 E-value=0.17 Score=41.58 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=22.7
Q ss_pred CCCeEEEeCCCCcEEEeecCCceeeec
Q 032092 120 IHHTFATAGSDGAFNFWDKDSKQRLKV 146 (147)
Q Consensus 120 dg~~latg~~Dg~i~iWd~~~~~~~~~ 146 (147)
.+..+..|+.||.++.+|.++|+.+.+
T Consensus 405 ~g~~v~~g~~dG~l~ald~~tG~~lW~ 431 (488)
T cd00216 405 AGNLVFAGAADGYFRAFDATTGKELWK 431 (488)
T ss_pred cCCeEEEECCCCeEEEEECCCCceeeE
Confidence 456788888999999999999988765
No 340
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=95.49 E-value=0.13 Score=44.25 Aligned_cols=104 Identities=15% Similarity=0.162 Sum_probs=65.7
Q ss_pred ecCCeEEEEECCCCccceeEecCCCCcceEEEEEccC------C------CEEEEEeeCCeEEEEeecCCCCcceeEEEe
Q 032092 5 TADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPD------Q------QGFWVGSIEGRVGVHHLDDSQQSKNFTFKC 72 (147)
Q Consensus 5 s~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spd------g------~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~ 72 (147)
+....|.+-|.++.+ .++.++ .|+..|+++.|.|- + -.+|+++..|.|.+ ||...+..+..+..
T Consensus 32 gshslV~VVDs~s~q-~iqsie-~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil--~d~~~~s~~~~l~~ 107 (1062)
T KOG1912|consen 32 GSHSLVSVVDSRSLQ-LIQSIE-LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL--VDFVLASVINWLSH 107 (1062)
T ss_pred ecCceEEEEehhhhh-hhhccc-cCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE--EEehhhhhhhhhcC
Confidence 334678899999875 345554 34456899998773 1 25788889999999 45444444444443
Q ss_pred ccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEec---CC-CeEEEeCCCCcEEEeecCCceeeecC
Q 032092 73 HRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQ---IH-HTFATAGSDGAFNFWDKDSKQRLKVF 147 (147)
Q Consensus 73 h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsp---dg-~~latg~~Dg~i~iWd~~~~~~~~~~ 147 (147)
|.. ++-.+ .|-| +. -.|+.=..-.++.+||+.+|+++..|
T Consensus 108 ~~~-----~~qdl------------------------------~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~ 151 (1062)
T KOG1912|consen 108 SND-----SVQDL------------------------------CWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKY 151 (1062)
T ss_pred CCc-----chhhe------------------------------eeeeccCcchheeEEecCCcEEEEEEccCCceeecc
Confidence 332 22222 3332 33 34555566779999999999887643
No 341
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.20 E-value=0.012 Score=51.17 Aligned_cols=66 Identities=17% Similarity=0.238 Sum_probs=45.4
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCe--EEEEeecCCC-CcceeEE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGR--VGVHHLDDSQ-QSKNFTF 70 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~--i~i~~~d~~~-~~~~~~~ 70 (147)
|++|+..|.|++|++.+|... ... ..|+.+|+-|.-+-||..+++.+.-.+ ..+ |+..+ +.+..+|
T Consensus 1116 L~vG~~~Geik~~nv~sG~~e-~s~-ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL--W~~~s~~~~~Hsf 1184 (1516)
T KOG1832|consen 1116 LAVGSHAGEIKIFNVSSGSME-ESV-NCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL--WDASSTGGPRHSF 1184 (1516)
T ss_pred EEeeeccceEEEEEccCcccc-ccc-cccccccccccccCCcceeeeeccccCchHHH--hccccccCccccc
Confidence 689999999999999998642 222 346667899998999988776654333 556 55542 3344444
No 342
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.20 E-value=0.25 Score=38.77 Aligned_cols=32 Identities=13% Similarity=0.291 Sum_probs=22.5
Q ss_pred EEEecCC-CeEEE-eCCCCcEEEeecCCceeeec
Q 032092 115 VLFVQIH-HTFAT-AGSDGAFNFWDKDSKQRLKV 146 (147)
Q Consensus 115 ~~fspdg-~~lat-g~~Dg~i~iWd~~~~~~~~~ 146 (147)
++.+.|. .+|.+ ...++.+.+||..+++.+++
T Consensus 294 i~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~ 327 (342)
T PF06433_consen 294 IAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRS 327 (342)
T ss_dssp EEEESSSS-EEEEEETTTTEEEEEETTT--EEEE
T ss_pred EEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEee
Confidence 3888877 45644 45689999999999998764
No 343
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.11 E-value=0.47 Score=41.24 Aligned_cols=60 Identities=12% Similarity=0.111 Sum_probs=38.4
Q ss_pred CeEeecCCeEEEE--ECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCC
Q 032092 1 MVVGTADRNLVVF--NLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDS 62 (147)
Q Consensus 1 l~~gs~dg~v~iw--di~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~ 62 (147)
+|+|-.+|.|..+ |+-+..-....+....+.||+.+++..+++..+-...-..|++ +.+.
T Consensus 140 Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~--y~l~ 201 (933)
T KOG2114|consen 140 IVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVML--YSLS 201 (933)
T ss_pred EEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEE--EEec
Confidence 4788899999887 3332211122344456679999999999887333333467888 5544
No 344
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.97 E-value=0.065 Score=45.25 Aligned_cols=61 Identities=20% Similarity=0.284 Sum_probs=46.1
Q ss_pred CeEeecCCeEEEEECCCCccceeEecC----CCCcceEEEEEccCCCEEEEEeeCCeEEEEeecC
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINS----PLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDD 61 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~----~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~ 61 (147)
+|.|+..|.|.++-++....+-..+.. .|+..|++++|++|+..+.+|...|+|.+.-+|.
T Consensus 91 vAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 91 VAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred hhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 366788899999998875432222211 2345799999999999999999999999866665
No 345
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=94.96 E-value=0.14 Score=42.49 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=24.2
Q ss_pred CCCeEEEeCCCCcEEEeecCCceeeec
Q 032092 120 IHHTFATAGSDGAFNFWDKDSKQRLKV 146 (147)
Q Consensus 120 dg~~latg~~Dg~i~iWd~~~~~~~~~ 146 (147)
+..+|++-+.|+++|+||+++++++++
T Consensus 229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~ 255 (547)
T PF11715_consen 229 DDTFLFTLSRDHTLRIWSLETGQCLAT 255 (547)
T ss_dssp TTTEEEEEETTSEEEEEETTTTCEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEE
Confidence 558899999999999999999999765
No 346
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=94.93 E-value=0.033 Score=47.72 Aligned_cols=108 Identities=12% Similarity=0.128 Sum_probs=68.1
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEE---------EEeeCCeEEEEeecCCCCcceeEEE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFW---------VGSIEGRVGVHHLDDSQQSKNFTFK 71 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~---------~g~~dg~i~i~~~d~~~~~~~~~~~ 71 (147)
+|+|...|+|-++|+.++.. .+.+ +-|...|+++.|--+...+- +|.--+.+.+ -|+++|.. ..|+
T Consensus 440 vAvGT~sGTV~vvdvst~~v-~~~f-svht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~v--tdLrtGls-k~fR 514 (1062)
T KOG1912|consen 440 VAVGTNSGTVDVVDVSTNAV-AASF-SVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVV--TDLRTGLS-KRFR 514 (1062)
T ss_pred EEeecCCceEEEEEecchhh-hhhh-cccccceeeeeeccceeEEEeeeccccccccceeeeEEE--EEcccccc-cccc
Confidence 47899999999999999752 1222 23445688888764433221 2233344555 67776644 3344
Q ss_pred eccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceee
Q 032092 72 CHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRL 144 (147)
Q Consensus 72 ~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~ 144 (147)
+.+. ....++..+ .-|..|++||-.=.|..+.+||+++..++
T Consensus 515 ~l~~-~despI~~i------------------------------rvS~~~~yLai~Fr~~plEiwd~kt~~~l 556 (1062)
T KOG1912|consen 515 GLQK-PDESPIRAI------------------------------RVSSSGRYLAILFRREPLEIWDLKTLRML 556 (1062)
T ss_pred cCCC-CCcCcceee------------------------------eecccCceEEEEecccchHHHhhccchHH
Confidence 3221 111234444 66778899999999999999999876654
No 347
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.88 E-value=0.24 Score=40.96 Aligned_cols=57 Identities=21% Similarity=0.367 Sum_probs=37.9
Q ss_pred eEeecCCeEEEEECCCCccc-eeEecC---CCCcceEEEEEccCCCEEEEEeeCCeEEEEeecC
Q 032092 2 VVGTADRNLVVFNLQNPQTE-FKRINS---PLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDD 61 (147)
Q Consensus 2 ~~gs~dg~v~iwdi~~~~~~-~~~~~~---~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~ 61 (147)
++|-.|+.|.-||.|-..+. ....++ ..+..-.|.+-..+| ++|+||.+|.|+| +|.
T Consensus 398 lvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRL--Ydr 458 (644)
T KOG2395|consen 398 LVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRL--YDR 458 (644)
T ss_pred EEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCc-eEEEeecCCcEEe--ehh
Confidence 46778999999999865431 111111 112235677766655 8999999999999 665
No 348
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.62 E-value=0.13 Score=27.93 Aligned_cols=30 Identities=23% Similarity=0.410 Sum_probs=25.3
Q ss_pred ceEEEEEccC-C--CEEEEEeeCCeEEEEeecCCC
Q 032092 32 QMRCVAAFPD-Q--QGFWVGSIEGRVGVHHLDDSQ 63 (147)
Q Consensus 32 ~i~~la~spd-g--~~l~~g~~dg~i~i~~~d~~~ 63 (147)
.++++.|||+ + +.|+..=..|.|.| +|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi--~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHI--VDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEE--EEccc
Confidence 4899999985 4 68888888899999 88874
No 349
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=94.43 E-value=0.19 Score=39.34 Aligned_cols=53 Identities=8% Similarity=0.130 Sum_probs=36.0
Q ss_pred cCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCC
Q 032092 6 ADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQ 64 (147)
Q Consensus 6 ~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~ 64 (147)
..+.+.|||+.+++. ..+... ...+....|||||+.+|... ++.|.+ .+..++
T Consensus 21 ~~~~y~i~d~~~~~~--~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~--~~~~~~ 73 (353)
T PF00930_consen 21 FKGDYYIYDIETGEI--TPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYL--RDLATG 73 (353)
T ss_dssp EEEEEEEEETTTTEE--EESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEE--ESSTTS
T ss_pred cceeEEEEecCCCce--EECcCC-ccccccceeecCCCeeEEEe-cCceEE--EECCCC
Confidence 346789999999752 233222 23578899999999998865 577877 776554
No 350
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=94.41 E-value=0.82 Score=37.54 Aligned_cols=94 Identities=13% Similarity=0.076 Sum_probs=59.7
Q ss_pred CeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCC-eEEEEeecCCCCcceeEEEeccCCceEEeeccce
Q 032092 8 RNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEG-RVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFT 86 (147)
Q Consensus 8 g~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg-~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~~ 86 (147)
|+..|.+.-.+- .+.-+++..|+=..+.-+++.++.|..|| .+-| +|...++. ..+...- ..+.++
T Consensus 341 GkaFi~~~~~~~----~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~i--yd~~~~e~-kr~e~~l-----g~I~av- 407 (668)
T COG4946 341 GKAFIMRPWDGY----SIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGI--YDKDGGEV-KRIEKDL-----GNIEAV- 407 (668)
T ss_pred CcEEEECCCCCe----eEEcCCCCceEEEEEccCCcceEEeccCCceEEE--EecCCceE-EEeeCCc-----cceEEE-
Confidence 555565555442 12223334577777888888899999999 7888 66654433 2222110 013333
Q ss_pred eeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCcee
Q 032092 87 SILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQR 143 (147)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~ 143 (147)
..+|||+.++.+.....+-+.|++++..
T Consensus 408 -----------------------------~vs~dGK~~vvaNdr~el~vididngnv 435 (668)
T COG4946 408 -----------------------------KVSPDGKKVVVANDRFELWVIDIDNGNV 435 (668)
T ss_pred -----------------------------EEcCCCcEEEEEcCceEEEEEEecCCCe
Confidence 8899999988887777888888887643
No 351
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.39 E-value=1.3 Score=36.97 Aligned_cols=65 Identities=18% Similarity=0.295 Sum_probs=41.2
Q ss_pred eEeecCCeEEEEECCCCccceeEecCCCCcce----------EEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEE
Q 032092 2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQM----------RCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFK 71 (147)
Q Consensus 2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i----------~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~ 71 (147)
.+++.++.|.-.|.++++..-+ ........+ +.+++. +..++.++.|+.+.- +|.++|+.+..+.
T Consensus 73 yv~s~~g~v~AlDa~TGk~lW~-~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~t~dg~l~A--LDa~TGk~~W~~~ 147 (527)
T TIGR03075 73 YVTTSYSRVYALDAKTGKELWK-YDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFGTLDARLVA--LDAKTGKVVWSKK 147 (527)
T ss_pred EEECCCCcEEEEECCCCceeeE-ecCCCCcccccccccccccccceEE--CCEEEEEcCCCEEEE--EECCCCCEEeecc
Confidence 4567788899999999975322 111110111 112332 456778888998877 8999998887654
No 352
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=94.39 E-value=1.5 Score=34.78 Aligned_cols=98 Identities=13% Similarity=0.127 Sum_probs=61.6
Q ss_pred cCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEee---CCeEEEEeecCCCCcceeEEEeccCCceEEee
Q 032092 6 ADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSI---EGRVGVHHLDDSQQSKNFTFKCHRDGSETCSV 82 (147)
Q Consensus 6 ~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~---dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v 82 (147)
.++.|.+.|...... .+.+..+ .....++++|+++.+.++.. ++++.+ +|..+++...+...-. ..
T Consensus 94 ~~~~v~vid~~~~~~-~~~~~vG--~~P~~~~~~~~~~~vYV~n~~~~~~~vsv--id~~t~~~~~~~~vG~------~P 162 (381)
T COG3391 94 DSNTVSVIDTATNTV-LGSIPVG--LGPVGLAVDPDGKYVYVANAGNGNNTVSV--IDAATNKVTATIPVGN------TP 162 (381)
T ss_pred CCCeEEEEcCcccce-eeEeeec--cCCceEEECCCCCEEEEEecccCCceEEE--EeCCCCeEEEEEecCC------Cc
Confidence 357888888666532 2333222 13578999999977666655 688877 8887766655432100 11
Q ss_pred ccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEE-EeCCCCcEEEeecCCceee
Q 032092 83 ISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFA-TAGSDGAFNFWDKDSKQRL 144 (147)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~la-tg~~Dg~i~iWd~~~~~~~ 144 (147)
..+ ++.|+|+.+. +-..++.|.+.|.+.....
T Consensus 163 ~~~------------------------------a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~ 195 (381)
T COG3391 163 TGV------------------------------AVDPDGNKVYVTNSDDNTVSVIDTSGNSVV 195 (381)
T ss_pred ceE------------------------------EECCCCCeEEEEecCCCeEEEEeCCCccee
Confidence 233 8999997444 4446788989887665443
No 353
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.19 E-value=1.1 Score=37.39 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=23.3
Q ss_pred CCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092 120 IHHTFATAGSDGAFNFWDKDSKQRLKVF 147 (147)
Q Consensus 120 dg~~latg~~Dg~i~iWd~~~~~~~~~~ 147 (147)
.|.++..++.||.++.+|.++|+.+.++
T Consensus 471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~ 498 (527)
T TIGR03075 471 AGDLVFYGTLEGYFKAFDAKTGEELWKF 498 (527)
T ss_pred CCcEEEEECCCCeEEEEECCCCCEeEEE
Confidence 4456777888999999999999998764
No 354
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.06 E-value=0.23 Score=36.75 Aligned_cols=52 Identities=13% Similarity=0.079 Sum_probs=31.6
Q ss_pred ecCCeEEEEECCCCccceeEecCCCCcceEEEEEcc-CCCEEEEEeeCCeEEEEeecC
Q 032092 5 TADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFP-DQQGFWVGSIEGRVGVHHLDD 61 (147)
Q Consensus 5 s~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~sp-dg~~l~~g~~dg~i~i~~~d~ 61 (147)
+.||.|+-++++.-+... ...+ .+.++.--| -+..+++|+.+|.|.+|.|+.
T Consensus 37 sa~~~v~~~~~~k~k~s~--rse~---~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~ 89 (238)
T KOG2444|consen 37 SADGLVRERKVRKHKESC--RSER---FIDEGQRVVTASAKLMVGTSDGAVYVFNWNL 89 (238)
T ss_pred cCCcccccchhhhhhhhh--hhhh---hhhcceeecccCceEEeecccceEEEecCCc
Confidence 677888888887643211 0000 122221112 257899999999999987774
No 355
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=93.92 E-value=2.7 Score=33.73 Aligned_cols=145 Identities=14% Similarity=0.123 Sum_probs=73.3
Q ss_pred CeEeecCCeEEEEECCCCccceeE-ecC-----CCCcceEEEEEcc-----CC---CEEEEEeeCCeEEEEeecCC-CCc
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKR-INS-----PLKYQMRCVAAFP-----DQ---QGFWVGSIEGRVGVHHLDDS-QQS 65 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~-~~~-----~~~~~i~~la~sp-----dg---~~l~~g~~dg~i~i~~~d~~-~~~ 65 (147)
+|+|.++|.+.|.|+|.+...++. +.. .....++++.|+. |+ -++.+|+..|.+.++.+.+. .+.
T Consensus 100 vaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~ 179 (395)
T PF08596_consen 100 VAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGR 179 (395)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-
T ss_pred EEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCc
Confidence 478899999999999887542221 111 1123478888863 33 46889999999999666543 232
Q ss_pred ceeEEEecc----CCce-EEeeccc----------------------eeeeecCCCcceeeeee--eeeeeeeeceE---
Q 032092 66 KNFTFKCHR----DGSE-TCSVISF----------------------TSILAGDAPKYSSFYKV--KRLHLFVKSHV--- 113 (147)
Q Consensus 66 ~~~~~~~h~----~~~~-~~~v~~~----------------------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--- 113 (147)
....+.+.. .... ..+++.. ..++.-++..++++... +..+.++..+.
T Consensus 180 f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~ 259 (395)
T PF08596_consen 180 FSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCS 259 (395)
T ss_dssp EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEE
T ss_pred eEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeeccccccc
Confidence 222232221 1100 0011000 11222333344444422 22333443322
Q ss_pred EEEE-----ecCCCeEEEeCCCCcEEEeecCCceeee
Q 032092 114 IVLF-----VQIHHTFATAGSDGAFNFWDKDSKQRLK 145 (147)
Q Consensus 114 ~~~f-----spdg~~latg~~Dg~i~iWd~~~~~~~~ 145 (147)
++.+ ...+..|++=..||.|+++-+=..+.+.
T Consensus 260 ~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~ 296 (395)
T PF08596_consen 260 SASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIK 296 (395)
T ss_dssp EEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEE
T ss_pred eEEEEeecccCCceEEEEEECCCcEEEEECCCchHhh
Confidence 2444 2355778888899999999887766554
No 356
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.76 E-value=3 Score=36.18 Aligned_cols=93 Identities=12% Similarity=0.074 Sum_probs=50.3
Q ss_pred CcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCc--eEEeeccceeeeecCCCcceeeeeeeeeee
Q 032092 30 KYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGS--ETCSVISFTSILAGDAPKYSSFYKVKRLHL 107 (147)
Q Consensus 30 ~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (147)
.+.|..|.+||+|+.+|..+..|-..+ .+-.+-|+. ..|.+-+... ...++... ++.++... .
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~-~~~~~g~~~i~Crt~~v~~~-~~~~~~~~------~------ 148 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKN-GEFEDGKKEINCRTVPVDER-FFTSNSSL------E------ 148 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEE-EeccccCcc-ccccCCCcceeEEEEEechh-hccCCCCc------e------
Confidence 356899999999999998888665544 121111211 1122111110 01122221 00000000 0
Q ss_pred eeeceEEEEEecCC---CeEEEeCCCCcEEEeecCCc
Q 032092 108 FVKSHVIVLFVQIH---HTFATAGSDGAFNFWDKDSK 141 (147)
Q Consensus 108 ~~~~~~~~~fspdg---~~latg~~Dg~i~iWd~~~~ 141 (147)
...+.|||.+ .+|+.=.+|+++|+||+.+.
T Consensus 149 ----i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 149 ----IKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred ----EEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 1235999974 77887789999999999753
No 357
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=93.60 E-value=0.015 Score=48.64 Aligned_cols=102 Identities=14% Similarity=0.234 Sum_probs=60.9
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEcc-CCCEEEEEeeCCeEEEEeecC-CCCc-ceeEEEeccCCc
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFP-DQQGFWVGSIEGRVGVHHLDD-SQQS-KNFTFKCHRDGS 77 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~sp-dg~~l~~g~~dg~i~i~~~d~-~~~~-~~~~~~~h~~~~ 77 (147)
+.+|...+.+.++|+|........+. ..-++-+.+.| .++++++-. ||.|.+ ||. ++-+ +........+
T Consensus 169 vlaGm~sr~~~ifdlRqs~~~~~svn---Tk~vqG~tVdp~~~nY~cs~~-dg~iAi--wD~~rnienpl~~i~~~~N-- 240 (783)
T KOG1008|consen 169 VLAGMTSRSVHIFDLRQSLDSVSSVN---TKYVQGITVDPFSPNYFCSNS-DGDIAI--WDTYRNIENPLQIILRNEN-- 240 (783)
T ss_pred hhcccccchhhhhhhhhhhhhhhhhh---hhhcccceecCCCCCceeccc-cCceee--ccchhhhccHHHHHhhCCC--
Confidence 35677778999999996422112221 12367788889 788888766 999999 773 2211 1111111111
Q ss_pred eEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCC-CeEEEeCCC-CcEEEeecC
Q 032092 78 ETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIH-HTFATAGSD-GAFNFWDKD 139 (147)
Q Consensus 78 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg-~~latg~~D-g~i~iWd~~ 139 (147)
.. -+.|+.++|+|.. .++|+...| ++|+++|+.
T Consensus 241 ------~~-----------------------~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 241 ------KK-----------------------PKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred ------Cc-----------------------ccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 00 0123345999965 567777776 589999975
No 358
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=93.35 E-value=0.034 Score=46.63 Aligned_cols=103 Identities=12% Similarity=0.171 Sum_probs=64.5
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEcc-CCCEEEEEee----CCeEEEEeecCCCC--cc--eeEEE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFP-DQQGFWVGSI----EGRVGVHHLDDSQQ--SK--NFTFK 71 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~sp-dg~~l~~g~~----dg~i~i~~~d~~~~--~~--~~~~~ 71 (147)
|++|..+|.|-+-.++...-.-+....++..+-+++||+| |.+.||+|-. |-.+.| ||..++ .+ ...|.
T Consensus 73 lavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~I--wdi~s~ltvPke~~~fs 150 (783)
T KOG1008|consen 73 LAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKI--WDINSLLTVPKESPLFS 150 (783)
T ss_pred hhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccc--eecccccCCCccccccc
Confidence 5788999999999998753211222223334678999998 5677888743 455778 454332 11 11111
Q ss_pred eccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecC
Q 032092 72 CHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKD 139 (147)
Q Consensus 72 ~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~ 139 (147)
+. .+.+.++++|-.+.+++.+|..-..+.+.|++
T Consensus 151 ~~----------------------------------~l~gqns~cwlrd~klvlaGm~sr~~~ifdlR 184 (783)
T KOG1008|consen 151 SS----------------------------------TLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLR 184 (783)
T ss_pred cc----------------------------------cccCccccccccCcchhhcccccchhhhhhhh
Confidence 10 11222344787788999999888899999986
No 359
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.13 E-value=0.5 Score=34.79 Aligned_cols=61 Identities=15% Similarity=0.071 Sum_probs=40.1
Q ss_pred CeEeecCCeEEEEECCCCccceeE------ecC------CCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCC
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKR------INS------PLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDS 62 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~------~~~------~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~ 62 (147)
|++-+.+|.+++||+.+++..++. +.. .....|.++.++.+|.-+++- .+|..+.|+-|..
T Consensus 25 Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y~y~~~L~ 97 (219)
T PF07569_consen 25 LLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDSYSYSPDLG 97 (219)
T ss_pred EEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCEEEeccccc
Confidence 345688999999999998653322 110 122357888899888777664 4578888544443
No 360
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=93.12 E-value=3 Score=31.69 Aligned_cols=59 Identities=12% Similarity=0.095 Sum_probs=35.6
Q ss_pred CCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEe
Q 032092 7 DRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKC 72 (147)
Q Consensus 7 dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~ 72 (147)
++...+||..+.++ ..++.-+.+. .-|+ .|++.|+.++...++.. +|+.+.+...+++.
T Consensus 109 ~~~~f~yd~~tl~~-~~~~~y~~EG--WGLt--~dg~~Li~SDGS~~L~~--~dP~~f~~~~~i~V 167 (264)
T PF05096_consen 109 EGTGFVYDPNTLKK-IGTFPYPGEG--WGLT--SDGKRLIMSDGSSRLYF--LDPETFKEVRTIQV 167 (264)
T ss_dssp SSEEEEEETTTTEE-EEEEE-SSS----EEE--ECSSCEEEE-SSSEEEE--E-TTT-SEEEEEE-
T ss_pred CCeEEEEccccceE-EEEEecCCcc--eEEE--cCCCEEEEECCccceEE--ECCcccceEEEEEE
Confidence 57788999998854 4444433222 3444 67888888776677766 99987766665543
No 361
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=93.11 E-value=1.1 Score=35.71 Aligned_cols=33 Identities=18% Similarity=0.120 Sum_probs=23.9
Q ss_pred eEEEEEccCCCEEEEE-eeCCe----EEEEeecCCCCcce
Q 032092 33 MRCVAAFPDQQGFWVG-SIEGR----VGVHHLDDSQQSKN 67 (147)
Q Consensus 33 i~~la~spdg~~l~~g-~~dg~----i~i~~~d~~~~~~~ 67 (147)
+...++||||+++|.+ +..|. +++ +|+.+++.+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v--~Dl~tg~~l 163 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRV--FDLETGKFL 163 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEE--EETTTTEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEE--EECCCCcCc
Confidence 4568899999999865 44454 666 888877543
No 362
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.93 E-value=3.4 Score=34.63 Aligned_cols=96 Identities=11% Similarity=0.139 Sum_probs=51.9
Q ss_pred cceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeeccc--eeeeecCCCcceeeeeeeeeeee
Q 032092 31 YQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISF--TSILAGDAPKYSSFYKVKRLHLF 108 (147)
Q Consensus 31 ~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~ 108 (147)
+.|..+..||.|..++..+.+|.+.+. .-.|-|+. ..|+..+. ...+.+.++ -+++++. .+ .+.
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMe-Lp~rwG~~-s~~eDgk~-~v~CRt~~i~~~~ftss~--~l----tl~----- 169 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVME-LPKRWGKN-SEFEDGKS-TVNCRTTPVAERFFTSST--SL----TLK----- 169 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEE-chhhcCcc-ceecCCCc-eEEEEeecccceeeccCC--ce----eee-----
Confidence 457788899999999999999987663 21121221 11221110 001111111 0011110 00 111
Q ss_pred eeceEEEEEecCC---CeEEEeCCCCcEEEeecCCceeee
Q 032092 109 VKSHVIVLFVQIH---HTFATAGSDGAFNFWDKDSKQRLK 145 (147)
Q Consensus 109 ~~~~~~~~fspdg---~~latg~~Dg~i~iWd~~~~~~~~ 145 (147)
.++|||+. ..|.-=.+|.+||+||+.+...++
T Consensus 170 -----Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tely 204 (741)
T KOG4460|consen 170 -----QAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELY 204 (741)
T ss_pred -----eccccCCccCCceEEEEecCcEEEEEecCCcchhh
Confidence 24999975 566666789999999987665543
No 363
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=92.82 E-value=0.77 Score=40.83 Aligned_cols=72 Identities=8% Similarity=0.117 Sum_probs=46.8
Q ss_pred ceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeec
Q 032092 32 QMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKS 111 (147)
Q Consensus 32 ~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (147)
.|.++.+-++...++.+..+|.|.+.-.|...........|. +. .|
T Consensus 77 ~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~--------vd--------------------------~G 122 (928)
T PF04762_consen 77 KIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGS--------VD--------------------------SG 122 (928)
T ss_pred cEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEE--------Ec--------------------------Cc
Confidence 588889999999999999999998832222111121222221 11 11
Q ss_pred eEEEEEecCCCeEEEeCCCCcEEEee
Q 032092 112 HVIVLFVQIHHTFATAGSDGAFNFWD 137 (147)
Q Consensus 112 ~~~~~fspdg~~latg~~Dg~i~iWd 137 (147)
...++||||+.+||-...++++.+=.
T Consensus 123 I~a~~WSPD~Ella~vT~~~~l~~mt 148 (928)
T PF04762_consen 123 ILAASWSPDEELLALVTGEGNLLLMT 148 (928)
T ss_pred EEEEEECCCcCEEEEEeCCCEEEEEe
Confidence 22339999999999888888887763
No 364
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.76 E-value=1.8 Score=33.13 Aligned_cols=67 Identities=16% Similarity=0.206 Sum_probs=48.0
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEE-EEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEe
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRC-VAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKC 72 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~-la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~ 72 (147)
++.|+..|.++.-+.+++++--+ +... ..|.+ -...+++..+..|+-|+..+. +|.++...++..++
T Consensus 66 VV~GCy~g~lYfl~~~tGs~~w~-f~~~--~~vk~~a~~d~~~glIycgshd~~~ya--lD~~~~~cVykskc 133 (354)
T KOG4649|consen 66 VVLGCYSGGLYFLCVKTGSQIWN-FVIL--ETVKVRAQCDFDGGLIYCGSHDGNFYA--LDPKTYGCVYKSKC 133 (354)
T ss_pred EEEEEccCcEEEEEecchhheee-eeeh--hhhccceEEcCCCceEEEecCCCcEEE--ecccccceEEeccc
Confidence 36789999999999999965222 1111 12222 245688999999999999988 99988777766554
No 365
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.45 E-value=2.1 Score=37.38 Aligned_cols=53 Identities=21% Similarity=0.186 Sum_probs=36.3
Q ss_pred eEEEEECCCCc--c-c--e--eEec---CC-CCcceEEEEEccCCCEEEEEeeCCeEEEEeecC
Q 032092 9 NLVVFNLQNPQ--T-E--F--KRIN---SP-LKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDD 61 (147)
Q Consensus 9 ~v~iwdi~~~~--~-~--~--~~~~---~~-~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~ 61 (147)
.++|||+..-+ . | . +++. .| ...|+.+|++|.+-+.+|+|-.+|.|.++-=|+
T Consensus 93 llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi 156 (933)
T KOG2114|consen 93 LLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDI 156 (933)
T ss_pred EEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcc
Confidence 68999997542 1 1 1 1111 12 235789999999999999999999998843244
No 366
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=92.42 E-value=1.7 Score=36.03 Aligned_cols=78 Identities=14% Similarity=0.066 Sum_probs=50.1
Q ss_pred cCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEE---eeCCeEEEEeecCCCCcceeEEEeccCCceEEee
Q 032092 6 ADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVG---SIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSV 82 (147)
Q Consensus 6 ~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g---~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v 82 (147)
.--++.|||++.. ++..+- ..+=+++-|+|.|++++.+ ...|.+-+ ||..+.+.+..+.+-......|..
T Consensus 292 MPAkvtifnlr~~--~v~df~---egpRN~~~fnp~g~ii~lAGFGNL~G~mEv--wDv~n~K~i~~~~a~~tt~~eW~P 364 (566)
T KOG2315|consen 292 MPAKVTIFNLRGK--PVFDFP---EGPRNTAFFNPHGNIILLAGFGNLPGDMEV--WDVPNRKLIAKFKAANTTVFEWSP 364 (566)
T ss_pred ccceEEEEcCCCC--EeEeCC---CCCccceEECCCCCEEEEeecCCCCCceEE--EeccchhhccccccCCceEEEEcC
Confidence 3457889999863 433332 2355789999999988764 45788999 777776666666543332334555
Q ss_pred ccceeeee
Q 032092 83 ISFTSILA 90 (147)
Q Consensus 83 ~~~~~~~~ 90 (147)
+.-.++++
T Consensus 365 dGe~flTA 372 (566)
T KOG2315|consen 365 DGEYFLTA 372 (566)
T ss_pred CCcEEEEE
Confidence 55555544
No 367
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=92.41 E-value=0.12 Score=45.17 Aligned_cols=103 Identities=19% Similarity=0.284 Sum_probs=58.9
Q ss_pred CeEEEEECCC--Ccc----ceeEecCCCCcceEEEEEcc---CCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCce
Q 032092 8 RNLVVFNLQN--PQT----EFKRINSPLKYQMRCVAAFP---DQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE 78 (147)
Q Consensus 8 g~v~iwdi~~--~~~----~~~~~~~~~~~~i~~la~sp---dg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~ 78 (147)
|...+||+.- |+. .++ +..+....+.-|.|.| +.-++-.+-.+|.|++-.||.... .-|++|...
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~-~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~---~l~rsHs~~-- 226 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVT-PITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR---SLFRSHSQR-- 226 (1283)
T ss_pred hhhheeehHhhccccccceEEe-ecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH---HHHHhcCCC--
Confidence 4567888753 321 122 2222222344455544 566777888899999966665432 224556542
Q ss_pred EEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeec
Q 032092 79 TCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDK 138 (147)
Q Consensus 79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~ 138 (147)
+.....+..| +..++ ..||||+.||++..||.+++|-+
T Consensus 227 ---~~d~a~~~~g-------~~~l~------------~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 227 ---VTDMAFFAEG-------VLKLA------------SLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred ---cccHHHHhhc-------hhhhe------------eeCCCCcEEEEeecCCccceeee
Confidence 1111000000 00111 68999999999999999999975
No 368
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=92.25 E-value=3.2 Score=35.43 Aligned_cols=51 Identities=14% Similarity=0.169 Sum_probs=34.9
Q ss_pred ecCCeEEEEECCCCccceeEecCCCCcceEEEEE--ccCCCEEEEEeeCCeEEE
Q 032092 5 TADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAA--FPDQQGFWVGSIEGRVGV 56 (147)
Q Consensus 5 s~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~--spdg~~l~~g~~dg~i~i 56 (147)
+...++.|||.+.+..+.+.. -....+|.++.| .|||+.+++-+-.+.|.+
T Consensus 48 ~~~~~LtIWD~~~~~lE~~~~-f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l 100 (631)
T PF12234_consen 48 SSRSELTIWDTRSGVLEYEES-FSEDDPIRDLDWTSTPDGQSILAVGFPHHVLL 100 (631)
T ss_pred CCCCEEEEEEcCCcEEEEeee-ecCCCceeeceeeecCCCCEEEEEEcCcEEEE
Confidence 334578999999875322211 122457999987 568888887777888888
No 369
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.07 E-value=5.8 Score=32.43 Aligned_cols=54 Identities=7% Similarity=0.075 Sum_probs=33.2
Q ss_pred eecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCC
Q 032092 4 GTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDS 62 (147)
Q Consensus 4 gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~ 62 (147)
...++.|.+||+.+++ .+.++.. .+|+.|.||++|+++|..+.+ .+.|..++..
T Consensus 122 ~~~~~~i~~yDw~~~~-~i~~i~v---~~vk~V~Ws~~g~~val~t~~-~i~il~~~~~ 175 (443)
T PF04053_consen 122 VKSSDFICFYDWETGK-LIRRIDV---SAVKYVIWSDDGELVALVTKD-SIYILKYNLE 175 (443)
T ss_dssp EEETTEEEEE-TTT---EEEEESS----E-EEEEE-TTSSEEEEE-S--SEEEEEE-HH
T ss_pred EECCCCEEEEEhhHcc-eeeEEec---CCCcEEEEECCCCEEEEEeCC-eEEEEEecch
Confidence 3455689999999985 4555642 248999999999999988765 5666555543
No 370
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=91.76 E-value=3.7 Score=35.86 Aligned_cols=68 Identities=15% Similarity=0.227 Sum_probs=43.4
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCC--c-----ceEEEEEc----------------cCCCEEEEEeeCCeEEEE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLK--Y-----QMRCVAAF----------------PDQQGFWVGSIEGRVGVH 57 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~--~-----~i~~la~s----------------pdg~~l~~g~~dg~i~i~ 57 (147)
|.+++.++.|.-.|.+++++.-+ +..... . .-+.+++. .+++.+..++.|+.+.-
T Consensus 197 lYv~t~~~~V~ALDa~TGk~lW~-~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiA- 274 (764)
T TIGR03074 197 LYLCTPHNKVIALDAATGKEKWK-FDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIA- 274 (764)
T ss_pred EEEECCCCeEEEEECCCCcEEEE-EcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEE-
Confidence 35677889999999999875322 211100 0 01223332 13458888999999877
Q ss_pred eecCCCCcceeEEE
Q 032092 58 HLDDSQQSKNFTFK 71 (147)
Q Consensus 58 ~~d~~~~~~~~~~~ 71 (147)
+|.++|+....|.
T Consensus 275 -LDA~TGk~~W~fg 287 (764)
T TIGR03074 275 -LDADTGKLCEDFG 287 (764)
T ss_pred -EECCCCCEEEEec
Confidence 8999999887764
No 371
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=91.67 E-value=3.2 Score=32.22 Aligned_cols=27 Identities=19% Similarity=0.142 Sum_probs=19.9
Q ss_pred EEEEEecCCCeEEEeCC-CCcEEEeecC
Q 032092 113 VIVLFVQIHHTFATAGS-DGAFNFWDKD 139 (147)
Q Consensus 113 ~~~~fspdg~~latg~~-Dg~i~iWd~~ 139 (147)
+.++||||++.|.-+.+ .+.|.-++..
T Consensus 166 NGla~SpDg~tly~aDT~~~~i~r~~~d 193 (307)
T COG3386 166 NGLAFSPDGKTLYVADTPANRIHRYDLD 193 (307)
T ss_pred CceEECCCCCEEEEEeCCCCeEEEEecC
Confidence 45699999977777666 4677777764
No 372
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=91.58 E-value=4.4 Score=32.21 Aligned_cols=52 Identities=23% Similarity=0.237 Sum_probs=33.9
Q ss_pred CCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEE-eeCCeEEEEeecCCC
Q 032092 7 DRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVG-SIEGRVGVHHLDDSQ 63 (147)
Q Consensus 7 dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g-~~dg~i~i~~~d~~~ 63 (147)
++++.+.|-.+.+. ..... ....+ ..++++|+|+.+.+. ..++++.+ +|...
T Consensus 139 ~~~vsvid~~t~~~-~~~~~-vG~~P-~~~a~~p~g~~vyv~~~~~~~v~v--i~~~~ 191 (381)
T COG3391 139 NNTVSVIDAATNKV-TATIP-VGNTP-TGVAVDPDGNKVYVTNSDDNTVSV--IDTSG 191 (381)
T ss_pred CceEEEEeCCCCeE-EEEEe-cCCCc-ceEEECCCCCeEEEEecCCCeEEE--EeCCC
Confidence 56777777777643 33321 12234 789999999965554 47899998 77543
No 373
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=91.53 E-value=0.48 Score=41.14 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=30.9
Q ss_pred ceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCccee
Q 032092 32 QMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNF 68 (147)
Q Consensus 32 ~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~ 68 (147)
-+.+++-+|.|+.++.++.||+|++++|-+++...+.
T Consensus 16 ~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~ 52 (1636)
T KOG3616|consen 16 FTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKIC 52 (1636)
T ss_pred eeeeeeecCCCceEEEEecCCcEEEEeecccchhhhh
Confidence 3678888999999999999999999988887654443
No 374
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=91.42 E-value=0.72 Score=36.11 Aligned_cols=27 Identities=15% Similarity=0.073 Sum_probs=21.4
Q ss_pred EEecCCCeEEEeCCCCcEEEeecCCcee
Q 032092 116 LFVQIHHTFATAGSDGAFNFWDKDSKQR 143 (147)
Q Consensus 116 ~fspdg~~latg~~Dg~i~iWd~~~~~~ 143 (147)
.|||+|+.+|-.. |+.|.+++..+++.
T Consensus 49 ~~sP~g~~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 49 KWSPDGKYIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp EE-SSSTEEEEEE-TTEEEEESSTTSEE
T ss_pred eeecCCCeeEEEe-cCceEEEECCCCCe
Confidence 9999999888874 68899999877644
No 375
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.21 E-value=0.44 Score=39.50 Aligned_cols=57 Identities=14% Similarity=0.180 Sum_probs=40.8
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCC
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDS 62 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~ 62 (147)
+|+||.+|.|||||- .+.+. ++...+...+|.-|..+.||+.+++ +.+.++.| +++.
T Consensus 444 IvvgS~~GdIRLYdr-i~~~A-KTAlPgLG~~I~hVdvtadGKwil~-Tc~tyLlL--i~t~ 500 (644)
T KOG2395|consen 444 IVVGSLKGDIRLYDR-IGRRA-KTALPGLGDAIKHVDVTADGKWILA-TCKTYLLL--IDTL 500 (644)
T ss_pred EEEeecCCcEEeehh-hhhhh-hhcccccCCceeeEEeeccCcEEEE-ecccEEEE--EEEe
Confidence 589999999999997 44322 2222234568999999999988754 55688888 6653
No 376
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.10 E-value=0.97 Score=36.23 Aligned_cols=58 Identities=16% Similarity=0.170 Sum_probs=43.9
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCC-CEEEEEeeCCeEEEEeecCCC
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQ-QGFWVGSIEGRVGVHHLDDSQ 63 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg-~~l~~g~~dg~i~i~~~d~~~ 63 (147)
|..++-+++|+|.|+++... +.... .+ .++.+.+|.-|. .++.+|...|.|.| +|.+.
T Consensus 209 l~~asl~nkiki~dlet~~~-vssy~-a~-~~~wSC~wDlde~h~IYaGl~nG~Vlv--yD~R~ 267 (463)
T KOG1645|consen 209 LGLASLGNKIKIMDLETSCV-VSSYI-AY-NQIWSCCWDLDERHVIYAGLQNGMVLV--YDMRQ 267 (463)
T ss_pred eeeeccCceEEEEeccccee-eehee-cc-CCceeeeeccCCcceeEEeccCceEEE--EEccC
Confidence 35678899999999998743 33332 23 478999998875 56778889999999 77774
No 377
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=90.96 E-value=0.58 Score=23.04 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=21.2
Q ss_pred eEEEeCCCCcEEEeecCCceeeecC
Q 032092 123 TFATAGSDGAFNFWDKDSKQRLKVF 147 (147)
Q Consensus 123 ~latg~~Dg~i~iWd~~~~~~~~~~ 147 (147)
.+..++.||.+...|.++|+.+.++
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 5667788999999999999988764
No 378
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=90.72 E-value=0.82 Score=35.94 Aligned_cols=58 Identities=17% Similarity=0.273 Sum_probs=39.7
Q ss_pred eEEEEECCCCccceeEecCCCCcceEEEEEccCCC-EE-EEEeeCCeEEEEeecCCCCcceeEEE
Q 032092 9 NLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQ-GF-WVGSIEGRVGVHHLDDSQQSKNFTFK 71 (147)
Q Consensus 9 ~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~-~l-~~g~~dg~i~i~~~d~~~~~~~~~~~ 71 (147)
.|=+||+.++++ +.++. .+.++.+|+++.|.+ .| ++...++.+.+ +|..+|+.+.+..
T Consensus 270 eVWv~D~~t~kr-v~Ri~--l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v--~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 270 EVWVYDLKTHKR-VARIP--LEHPIDSIAVSQDDKPLLYALSAGDGTLDV--YDAATGKLVRSIE 329 (342)
T ss_dssp EEEEEETTTTEE-EEEEE--EEEEESEEEEESSSS-EEEEEETTTTEEEE--EETTT--EEEEE-
T ss_pred EEEEEECCCCeE-EEEEe--CCCccceEEEccCCCcEEEEEcCCCCeEEE--EeCcCCcEEeehh
Confidence 466778998864 45553 345788999999876 33 33455789999 9999998877665
No 379
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=90.09 E-value=1.6 Score=35.64 Aligned_cols=137 Identities=9% Similarity=-0.034 Sum_probs=75.8
Q ss_pred EeecCCeEEEEECCC-CccceeEec-----------CC-CCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeE
Q 032092 3 VGTADRNLVVFNLQN-PQTEFKRIN-----------SP-LKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFT 69 (147)
Q Consensus 3 ~gs~dg~v~iwdi~~-~~~~~~~~~-----------~~-~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~ 69 (147)
+....|.|.=|.... .+.|...+. .+ .+....++.|+|+|..+.+-+.|-+|++ ++..+|+..+.
T Consensus 161 SiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~--F~~KtGklvqe 238 (558)
T KOG0882|consen 161 SIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRG--FVFKTGKLVQE 238 (558)
T ss_pred eccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEE--EEeccchhhhh
Confidence 334457888898873 222211000 00 1223688999999999999999999999 77777777665
Q ss_pred EEeccCCceEE--eeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092 70 FKCHRDGSETC--SVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146 (147)
Q Consensus 70 ~~~h~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~ 146 (147)
+..-....+.. +...+.-+.-|++=. +-+++++. -...+ ..+.|-..|++|+-|..=| |++.++.++.+.+.
T Consensus 239 iDE~~t~~~~q~ks~y~l~~VelgRRma--verelek~-~~~~~-~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri 312 (558)
T KOG0882|consen 239 IDEVLTDAQYQPKSPYGLMHVELGRRMA--VERELEKH-GSTVG-TNAVFDESGNFLLYGTILG-IKVINLDTNTVVRI 312 (558)
T ss_pred hhccchhhhhccccccccceeehhhhhh--HHhhHhhh-cCccc-ceeEEcCCCCEEEeeccee-EEEEEeecCeEEEE
Confidence 53211100000 011111111111111 11111110 00000 1348888999999888776 89999998887664
No 380
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=89.85 E-value=0.79 Score=23.63 Aligned_cols=22 Identities=14% Similarity=0.300 Sum_probs=13.7
Q ss_pred EEEecCCCeEE-EeCCC--CcEEEe
Q 032092 115 VLFVQIHHTFA-TAGSD--GAFNFW 136 (147)
Q Consensus 115 ~~fspdg~~la-tg~~D--g~i~iW 136 (147)
.+|||||+.|+ ++..+ |.-.||
T Consensus 14 p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 14 PAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp EEE-TTSSEEEEEEECT--SSEEEE
T ss_pred EEEecCCCEEEEEecCCCCCCcCEE
Confidence 49999997654 44445 666665
No 381
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=89.79 E-value=4.2 Score=30.21 Aligned_cols=55 Identities=29% Similarity=0.456 Sum_probs=37.3
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeec
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLD 60 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d 60 (147)
|++|+++| +.+|++.....+.+ +. ...+|..|+.-|+-+.+++=+ |+++.+++++
T Consensus 10 L~vGt~~G-l~~~~~~~~~~~~~-i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~ 64 (275)
T PF00780_consen 10 LLVGTEDG-LYVYDLSDPSKPTR-IL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLD 64 (275)
T ss_pred EEEEECCC-EEEEEecCCcccee-Ee--ecceEEEEEEecccCEEEEEc-CCccEEEEch
Confidence 57898888 99999944333322 22 224599999999877766654 4999994443
No 382
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.44 E-value=3.4 Score=32.05 Aligned_cols=62 Identities=18% Similarity=0.212 Sum_probs=30.5
Q ss_pred EEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEee-----CCeEEEEeecCCC-CcceeEEEecc
Q 032092 11 VVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSI-----EGRVGVHHLDDSQ-QSKNFTFKCHR 74 (147)
Q Consensus 11 ~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~-----dg~i~i~~~d~~~-~~~~~~~~~h~ 74 (147)
.++|....++++.........----=.|||||.+|.+.-. -|-|-| +|.+. ...+.+|..|.
T Consensus 94 ~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGv--Yd~r~~fqrvgE~~t~G 161 (366)
T COG3490 94 MVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGV--YDAREGFQRVGEFSTHG 161 (366)
T ss_pred EEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEE--EecccccceecccccCC
Confidence 4677777655533221111110112368899988766422 355777 45442 22334444443
No 383
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=89.36 E-value=6.5 Score=30.47 Aligned_cols=25 Identities=12% Similarity=0.274 Sum_probs=17.5
Q ss_pred cceEEEEEccCCCEEEEEeeCCeEEE
Q 032092 31 YQMRCVAAFPDQQGFWVGSIEGRVGV 56 (147)
Q Consensus 31 ~~i~~la~spdg~~l~~g~~dg~i~i 56 (147)
..|.+|.|+||+...+++ ..|.|+.
T Consensus 187 ~riq~~gf~~~~~lw~~~-~Gg~~~~ 211 (302)
T PF14870_consen 187 RRIQSMGFSPDGNLWMLA-RGGQIQF 211 (302)
T ss_dssp S-EEEEEE-TTS-EEEEE-TTTEEEE
T ss_pred ceehhceecCCCCEEEEe-CCcEEEE
Confidence 459999999998776654 7788876
No 384
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=89.32 E-value=5.2 Score=27.28 Aligned_cols=61 Identities=13% Similarity=0.232 Sum_probs=37.8
Q ss_pred CeEeecCCeEEEEECCCCcc-------ceeEecCCCCcceEEEEEcc-----CCCEEEEEeeCCeEEEEeecCCCCcc
Q 032092 1 MVVGTADRNLVVFNLQNPQT-------EFKRINSPLKYQMRCVAAFP-----DQQGFWVGSIEGRVGVHHLDDSQQSK 66 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~-------~~~~~~~~~~~~i~~la~sp-----dg~~l~~g~~dg~i~i~~~d~~~~~~ 66 (147)
|+.++..|+|.|++...... ++..+. ...+|++|+-.| +.+.|+.|+... +.. +|..++..
T Consensus 13 L~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN--in~~italaaG~l~~~~~~D~LliGt~t~-lla--YDV~~N~d 85 (136)
T PF14781_consen 13 LACATTGGKVFIHNPHERGQRTGRQDSDISFLN--INQEITALAAGRLKPDDGRDCLLIGTQTS-LLA--YDVENNSD 85 (136)
T ss_pred EEEEecCCEEEEECCCccccccccccCceeEEE--CCCceEEEEEEecCCCCCcCEEEEeccce-EEE--EEcccCch
Confidence 57788899999999875432 122222 124688887655 356788887654 445 56654433
No 385
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=89.27 E-value=1.6 Score=23.71 Aligned_cols=26 Identities=23% Similarity=0.189 Sum_probs=21.4
Q ss_pred EEEecCC---CeEEEeCCCCcEEEeecCC
Q 032092 115 VLFVQIH---HTFATAGSDGAFNFWDKDS 140 (147)
Q Consensus 115 ~~fspdg---~~latg~~Dg~i~iWd~~~ 140 (147)
+.|||.. .+|+-+---|.|.|+|+++
T Consensus 6 ~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 6 CKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred EEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 5999854 4888887789999999984
No 386
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=88.71 E-value=3.7 Score=33.31 Aligned_cols=51 Identities=14% Similarity=0.165 Sum_probs=30.8
Q ss_pred eEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEE-EeeCCeEEEEeecCC
Q 032092 9 NLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWV-GSIEGRVGVHHLDDS 62 (147)
Q Consensus 9 ~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~-g~~dg~i~i~~~d~~ 62 (147)
.|.++|+...+.+ ++..... .-..=.|+|||+.++- .+..|+-.||-+|..
T Consensus 263 ~iy~~dl~~~~~~--~Lt~~~g-i~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~ 314 (425)
T COG0823 263 DIYLMDLDGKNLP--RLTNGFG-INTSPSWSPDGSKIVFTSDRGGRPQIYLYDLE 314 (425)
T ss_pred cEEEEcCCCCcce--ecccCCc-cccCccCCCCCCEEEEEeCCCCCcceEEECCC
Confidence 5677888877532 2332111 1124478999998874 455677666656765
No 387
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=88.68 E-value=2.5 Score=38.33 Aligned_cols=67 Identities=12% Similarity=0.120 Sum_probs=46.0
Q ss_pred ceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeec
Q 032092 32 QMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKS 111 (147)
Q Consensus 32 ~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (147)
.|.++.|.-+++.+..+..+|.|.+ .|+.+... ...+.... .|..
T Consensus 70 ~i~s~~fl~d~~~i~v~~~~G~iil--vd~et~~~--eivg~vd~----GI~a--------------------------- 114 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITALGDIIL--VDPETLEL--EIVGNVDN----GISA--------------------------- 114 (1265)
T ss_pred ceEEEEEecccceEEEEecCCcEEE--Ecccccce--eeeeeccC----ceEE---------------------------
Confidence 5888888888999999999999988 77754322 12221111 1222
Q ss_pred eEEEEEecCCCeEEEeCCCCcEEEe
Q 032092 112 HVIVLFVQIHHTFATAGSDGAFNFW 136 (147)
Q Consensus 112 ~~~~~fspdg~~latg~~Dg~i~iW 136 (147)
.+||||++++|-...++++.+=
T Consensus 115 ---aswS~Dee~l~liT~~~tll~m 136 (1265)
T KOG1920|consen 115 ---ASWSPDEELLALITGRQTLLFM 136 (1265)
T ss_pred ---EeecCCCcEEEEEeCCcEEEEE
Confidence 3999999998888777776653
No 388
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=88.56 E-value=6.2 Score=34.21 Aligned_cols=60 Identities=12% Similarity=0.098 Sum_probs=41.4
Q ss_pred CeEeecCCeEEEEECCCCc-------------------cceeEecCCCCcceEEEEEc--cCCCEEEEEeeCCeEEEEee
Q 032092 1 MVVGTADRNLVVFNLQNPQ-------------------TEFKRINSPLKYQMRCVAAF--PDQQGFWVGSIEGRVGVHHL 59 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~-------------------~~~~~~~~~~~~~i~~la~s--pdg~~l~~g~~dg~i~i~~~ 59 (147)
|+.|.+||.|.+|-+.+-- +|+-... ...++..|+++ ...+.+|+++....|-|+.+
T Consensus 117 Ll~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~--v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf 194 (717)
T PF08728_consen 117 LLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR--VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAF 194 (717)
T ss_pred EEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee--cCCceeEEEEEecCcceEEEEecCCceEEEEEE
Confidence 5788999999999652110 0111111 12357789998 77899999999999999777
Q ss_pred cCC
Q 032092 60 DDS 62 (147)
Q Consensus 60 d~~ 62 (147)
...
T Consensus 195 ~l~ 197 (717)
T PF08728_consen 195 ALV 197 (717)
T ss_pred ecc
Confidence 664
No 389
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=88.55 E-value=4.3 Score=32.02 Aligned_cols=18 Identities=17% Similarity=0.159 Sum_probs=13.6
Q ss_pred ceEEEEEccCCCEEEEEe
Q 032092 32 QMRCVAAFPDQQGFWVGS 49 (147)
Q Consensus 32 ~i~~la~spdg~~l~~g~ 49 (147)
..+.+++.|||..+++-+
T Consensus 125 ~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 125 SLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred cccCceECCCCCEEEecc
Confidence 367899999998766544
No 390
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=88.39 E-value=9.9 Score=29.82 Aligned_cols=69 Identities=22% Similarity=0.220 Sum_probs=40.1
Q ss_pred EeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEecc
Q 032092 3 VGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHR 74 (147)
Q Consensus 3 ~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~ 74 (147)
+++.+|.|.-.|..++...-..........+..-.+..+|+ +.+|+.+|.+.. +|.++|+....+....
T Consensus 73 ~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~--ld~~~G~~~W~~~~~~ 141 (370)
T COG1520 73 VGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYA--LDASTGTLVWSRNVGG 141 (370)
T ss_pred EecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEE--EECCCCcEEEEEecCC
Confidence 45678888888888876321111100001122222222665 778888897766 8988888887776443
No 391
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=87.90 E-value=1.1 Score=23.18 Aligned_cols=28 Identities=7% Similarity=0.109 Sum_probs=20.4
Q ss_pred cCCCeE-EEeCCCCcEEEeecCCceeeec
Q 032092 119 QIHHTF-ATAGSDGAFNFWDKDSKQRLKV 146 (147)
Q Consensus 119 pdg~~l-atg~~Dg~i~iWd~~~~~~~~~ 146 (147)
|+++.| ++.-.++.|.++|.++++.+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~ 29 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIAT 29 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEE
Confidence 677654 4444588999999988877654
No 392
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.59 E-value=6 Score=30.73 Aligned_cols=26 Identities=15% Similarity=0.295 Sum_probs=21.0
Q ss_pred EEecCCCeEEEeCCC-----CcEEEeecCCc
Q 032092 116 LFVQIHHTFATAGSD-----GAFNFWDKDSK 141 (147)
Q Consensus 116 ~fspdg~~latg~~D-----g~i~iWd~~~~ 141 (147)
+|||||++|...-+| |.|-|||.+.+
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence 899999998876554 68999998753
No 393
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=86.88 E-value=16 Score=32.89 Aligned_cols=104 Identities=16% Similarity=0.145 Sum_probs=57.2
Q ss_pred eEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCC------CEEEEEeeCCeEEEEeecCCCCcceeEEEeccC
Q 032092 2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQ------QGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRD 75 (147)
Q Consensus 2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg------~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~ 75 (147)
+.++.++.+...++..+. ............|.|+.++|-| +.+++|.++..+++..+.+. . .+.+|..
T Consensus 503 vvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd-~----~~~~~~~ 576 (1096)
T KOG1897|consen 503 VVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPD-L----ILITHEQ 576 (1096)
T ss_pred EEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCC-c----ceeeeec
Confidence 445555666556665543 1111111123568999999842 37899999999888545443 1 1222321
Q ss_pred CceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeec
Q 032092 76 GSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDK 138 (147)
Q Consensus 76 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~ 138 (147)
-...-.+.++ +-..|--|+.+|.++.+||.+.-+.+
T Consensus 577 l~~~~iPRSI---------------------------l~~~~e~d~~yLlvalgdG~l~~fv~ 612 (1096)
T KOG1897|consen 577 LSGEIIPRSI---------------------------LLTTFEGDIHYLLVALGDGALLYFVL 612 (1096)
T ss_pred cCCCccchhe---------------------------eeEEeeccceEEEEEcCCceEEEEEE
Confidence 1100112232 01156667788999999998775544
No 394
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=86.54 E-value=5.9 Score=31.46 Aligned_cols=45 Identities=20% Similarity=0.242 Sum_probs=27.6
Q ss_pred ecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCC
Q 032092 5 TADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEG 52 (147)
Q Consensus 5 s~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg 52 (147)
++...++++|+.+++.....+.. ..-..++|.+|++.|.....+.
T Consensus 147 ~e~~~l~v~Dl~tg~~l~d~i~~---~~~~~~~W~~d~~~~~y~~~~~ 191 (414)
T PF02897_consen 147 SEWYTLRVFDLETGKFLPDGIEN---PKFSSVSWSDDGKGFFYTRFDE 191 (414)
T ss_dssp SSEEEEEEEETTTTEEEEEEEEE---EESEEEEECTTSSEEEEEECST
T ss_pred CceEEEEEEECCCCcCcCCcccc---cccceEEEeCCCCEEEEEEeCc
Confidence 34456999999998532112211 1123499999999877665443
No 395
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=86.41 E-value=4.3 Score=31.31 Aligned_cols=40 Identities=10% Similarity=0.022 Sum_probs=34.6
Q ss_pred ceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEec
Q 032092 32 QMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCH 73 (147)
Q Consensus 32 ~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h 73 (147)
.+++|...++|++|++.-.-.+|.+ +|.++|+.+..+.+.
T Consensus 145 HiNsV~~~~~G~yLiS~R~~~~i~~--I~~~tG~I~W~lgG~ 184 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNTSTIYK--IDPSTGKIIWRLGGK 184 (299)
T ss_pred EeeeeeecCCccEEEEecccCEEEE--EECCCCcEEEEeCCC
Confidence 4899999999999999988888887 999899888888654
No 396
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=86.30 E-value=1.5 Score=22.64 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=19.5
Q ss_pred EEEeCCCCcEEEeecCCceeeecC
Q 032092 124 FATAGSDGAFNFWDKDSKQRLKVF 147 (147)
Q Consensus 124 latg~~Dg~i~iWd~~~~~~~~~~ 147 (147)
+..++.||.++-.|.++|+.+..|
T Consensus 3 v~~~~~~g~l~AlD~~TG~~~W~~ 26 (38)
T PF01011_consen 3 VYVGTPDGYLYALDAKTGKVLWKF 26 (38)
T ss_dssp EEEETTTSEEEEEETTTTSEEEEE
T ss_pred EEEeCCCCEEEEEECCCCCEEEee
Confidence 344588999999999999988754
No 397
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=86.23 E-value=16 Score=29.43 Aligned_cols=31 Identities=16% Similarity=-0.031 Sum_probs=26.2
Q ss_pred cceEEEEEccCCCEEEEEeeCCeEEEEeecC
Q 032092 31 YQMRCVAAFPDQQGFWVGSIEGRVGVHHLDD 61 (147)
Q Consensus 31 ~~i~~la~spdg~~l~~g~~dg~i~i~~~d~ 61 (147)
.++..|++||+|+.+|.-..+|.+.+..-|.
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf 247 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDF 247 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEECcc
Confidence 4689999999999999999999998844444
No 398
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=86.16 E-value=8.9 Score=26.89 Aligned_cols=30 Identities=13% Similarity=0.180 Sum_probs=23.5
Q ss_pred ceEEEEEecCC------CeEEEeCCCCcEEEeecCC
Q 032092 111 SHVIVLFVQIH------HTFATAGSDGAFNFWDKDS 140 (147)
Q Consensus 111 ~~~~~~fspdg------~~latg~~Dg~i~iWd~~~ 140 (147)
+..+++|||-| -+||.-.+++.+.||--..
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 34578999964 2688889999999998653
No 399
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=85.17 E-value=18 Score=29.10 Aligned_cols=112 Identities=16% Similarity=0.061 Sum_probs=53.7
Q ss_pred ceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCc-eEEeec--cceee-eecCCC-ccee-eeeeeee
Q 032092 32 QMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGS-ETCSVI--SFTSI-LAGDAP-KYSS-FYKVKRL 105 (147)
Q Consensus 32 ~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~-~~~~v~--~~~~~-~~~~~~-~~~~-~~~~~~~ 105 (147)
.|..+.|+++..-|++|...|.|-||-|...+.........+.+.. .-+..+ ...++ .+.+.+ ..+- |.+ ..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P--~~ 80 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLP--LT 80 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEE--EE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCc--hh
Confidence 4889999999889999999999999877654211100000000000 000000 00000 001111 1010 111 11
Q ss_pred eeee-eceE-EEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092 106 HLFV-KSHV-IVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146 (147)
Q Consensus 106 ~~~~-~~~~-~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~ 146 (147)
...+ .|.+ .++.| |=-++|.|..||.+.|-|++....|++
T Consensus 81 l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~ 122 (395)
T PF08596_consen 81 LLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYN 122 (395)
T ss_dssp EE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred heeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEee
Confidence 1111 3444 35555 446899999999999999988888764
No 400
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.45 E-value=12 Score=31.03 Aligned_cols=33 Identities=12% Similarity=0.000 Sum_probs=28.2
Q ss_pred CCcceEEEEEccCCCEEEEEeeCCeEEEEeecC
Q 032092 29 LKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDD 61 (147)
Q Consensus 29 ~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~ 61 (147)
.+++|++|.||||.+-+|+--.|.+|.++.+-.
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~ 97 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIP 97 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCC
Confidence 346899999999999999999999999855533
No 401
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=84.43 E-value=20 Score=28.91 Aligned_cols=33 Identities=12% Similarity=0.070 Sum_probs=26.3
Q ss_pred eEEEEEecCCCeEEEeCCCCcEEEeecCCceee
Q 032092 112 HVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRL 144 (147)
Q Consensus 112 ~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~ 144 (147)
...++.||+|+.+|--..+|.+.+....-.+.+
T Consensus 219 i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~ 251 (410)
T PF04841_consen 219 IIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKL 251 (410)
T ss_pred eEEEEECCCCCEEEEEECCCCEEEEECccccee
Confidence 356899999999999989999998876544443
No 402
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=84.20 E-value=4.3 Score=30.64 Aligned_cols=32 Identities=9% Similarity=0.018 Sum_probs=26.1
Q ss_pred EEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092 116 LFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF 147 (147)
Q Consensus 116 ~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~ 147 (147)
+.-.+|+++++.-+-|+|.-.|..+|++|.++
T Consensus 218 ~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~ei 249 (310)
T KOG4499|consen 218 TIDTEGNLYVATFNGGTVQKVDPTTGKILLEI 249 (310)
T ss_pred eEccCCcEEEEEecCcEEEEECCCCCcEEEEE
Confidence 55557888888888889999999999998764
No 403
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=82.98 E-value=4.2 Score=29.96 Aligned_cols=45 Identities=7% Similarity=0.014 Sum_probs=32.0
Q ss_pred eEeecCCeEEEEECCCCcc-ceeEecCCCCcceEEEEEccCCCEEEEE
Q 032092 2 VVGTADRNLVVFNLQNPQT-EFKRINSPLKYQMRCVAAFPDQQGFWVG 48 (147)
Q Consensus 2 ~~gs~dg~v~iwdi~~~~~-~~~~~~~~~~~~i~~la~spdg~~l~~g 48 (147)
.++....+|.+||+.+.+. +..++.. -.+|..|++++.|+++++-
T Consensus 32 fva~~g~~Vev~~l~~~~~~~~~~F~T--v~~V~~l~y~~~GDYlvTl 77 (215)
T PF14761_consen 32 FVAASGCKVEVYDLEQEECPLLCTFST--VGRVLQLVYSEAGDYLVTL 77 (215)
T ss_pred EEEcCCCEEEEEEcccCCCceeEEEcc--hhheeEEEeccccceEEEE
Confidence 3456678899999994332 3334432 2468999999999999984
No 404
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=82.93 E-value=18 Score=27.23 Aligned_cols=55 Identities=16% Similarity=0.288 Sum_probs=30.7
Q ss_pred CCeEEEEECCCCccc-----eeEec--CC--CCcceEEEEEccCCCEEEEEeeCCeEEEEeecC
Q 032092 7 DRNLVVFNLQNPQTE-----FKRIN--SP--LKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDD 61 (147)
Q Consensus 7 dg~v~iwdi~~~~~~-----~~~~~--~~--~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~ 61 (147)
++.+.++++...... ++.+. .. .+..+-.|||.|.++.|.++-......|+.++.
T Consensus 85 ~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~ 148 (248)
T PF06977_consen 85 DQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNG 148 (248)
T ss_dssp TTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEES
T ss_pred CCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcc
Confidence 778888888443211 11121 11 223478899999988888877776667744443
No 405
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=82.83 E-value=7.9 Score=32.12 Aligned_cols=37 Identities=11% Similarity=-0.032 Sum_probs=26.2
Q ss_pred ceEEEEEcc----CCCEEEEEeeCCeEEEEeecCCCCcceeEE
Q 032092 32 QMRCVAAFP----DQQGFWVGSIEGRVGVHHLDDSQQSKNFTF 70 (147)
Q Consensus 32 ~i~~la~sp----dg~~l~~g~~dg~i~i~~~d~~~~~~~~~~ 70 (147)
.+.++++++ +..++++-+.|+++++ ||+.+++.+.+.
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRi--W~l~t~~~~~~~ 256 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRI--WSLETGQCLATI 256 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEE--EETTTTCEEEEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEE--EECCCCeEEEEe
Confidence 356677777 6778889999999999 777777665544
No 406
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=82.04 E-value=20 Score=27.48 Aligned_cols=53 Identities=21% Similarity=0.384 Sum_probs=31.9
Q ss_pred CeEEEEECCCC-c--cceeEe-cCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCC
Q 032092 8 RNLVVFNLQNP-Q--TEFKRI-NSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQ 63 (147)
Q Consensus 8 g~v~iwdi~~~-~--~~~~~~-~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~ 63 (147)
|.|.+|++.+. . ..++.+ ....+.+|.+|+-- +.+|+++. .++|.+++++..+
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~lv~~~-g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGRLVVAV-GNKLYVYDLDNSK 118 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTEEEEEE-TTEEEEEEEETTS
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCEEEEee-cCEEEEEEccCcc
Confidence 89999999983 1 112222 22334678888765 44555544 5899997776643
No 407
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=81.85 E-value=12 Score=27.42 Aligned_cols=27 Identities=7% Similarity=-0.128 Sum_probs=21.1
Q ss_pred EccCCCEEEEEeeCCeEEEEeecCCCCcc
Q 032092 38 AFPDQQGFWVGSIEGRVGVHHLDDSQQSK 66 (147)
Q Consensus 38 ~spdg~~l~~g~~dg~i~i~~~d~~~~~~ 66 (147)
+..+++++++-+.+|.+++ ||+.+++.
T Consensus 18 l~~~~~~Ll~iT~~G~l~v--Wnl~~~k~ 44 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYV--WNLKKGKA 44 (219)
T ss_pred EEeCCCEEEEEeCCCeEEE--EECCCCee
Confidence 4456899999999999999 67765444
No 408
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=81.66 E-value=12 Score=28.09 Aligned_cols=37 Identities=16% Similarity=0.069 Sum_probs=25.5
Q ss_pred ceEEEEEccCC-CEEEEEeeCCeEEEEeecCCCCcceeEEE
Q 032092 32 QMRCVAAFPDQ-QGFWVGSIEGRVGVHHLDDSQQSKNFTFK 71 (147)
Q Consensus 32 ~i~~la~spdg-~~l~~g~~dg~i~i~~~d~~~~~~~~~~~ 71 (147)
.+..|+|+|+. ..+++....+.|.. ++. +|+.+.++.
T Consensus 23 e~SGLTy~pd~~tLfaV~d~~~~i~e--ls~-~G~vlr~i~ 60 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQDEPGEIYE--LSL-DGKVLRRIP 60 (248)
T ss_dssp -EEEEEEETTTTEEEEEETTTTEEEE--EET-T--EEEEEE
T ss_pred CccccEEcCCCCeEEEEECCCCEEEE--EcC-CCCEEEEEe
Confidence 48999999985 46778888888865 776 466665543
No 409
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=81.49 E-value=3.4 Score=26.02 Aligned_cols=42 Identities=21% Similarity=0.263 Sum_probs=25.8
Q ss_pred eecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEE
Q 032092 4 GTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVG 48 (147)
Q Consensus 4 gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g 48 (147)
+..+|.+--||..+++. +.+.....+ .+-|+++||++.++++
T Consensus 33 ~~~~GRll~ydp~t~~~--~vl~~~L~f-pNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKET--TVLLDGLYF-PNGVALSPDESFVLVA 74 (89)
T ss_dssp T---EEEEEEETTTTEE--EEEEEEESS-EEEEEE-TTSSEEEEE
T ss_pred CCCCcCEEEEECCCCeE--EEehhCCCc-cCeEEEcCCCCEEEEE
Confidence 34568888899999753 222222323 5899999999977664
No 410
>PRK13616 lipoprotein LpqB; Provisional
Probab=81.12 E-value=7.1 Score=33.14 Aligned_cols=19 Identities=16% Similarity=0.102 Sum_probs=14.1
Q ss_pred eEEEEEccCCCEEEEEeeC
Q 032092 33 MRCVAAFPDQQGFWVGSIE 51 (147)
Q Consensus 33 i~~la~spdg~~l~~g~~d 51 (147)
...-.|+|||+.+++....
T Consensus 399 ~t~PsWspDG~~lw~v~dg 417 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDG 417 (591)
T ss_pred CCCceECCCCCceEEEecC
Confidence 5667899998888776543
No 411
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=81.05 E-value=38 Score=29.81 Aligned_cols=27 Identities=7% Similarity=0.138 Sum_probs=23.2
Q ss_pred CCC---eEEEeCCCCcEEEeecCCceeeec
Q 032092 120 IHH---TFATAGSDGAFNFWDKDSKQRLKV 146 (147)
Q Consensus 120 dg~---~latg~~Dg~i~iWd~~~~~~~~~ 146 (147)
+|+ .++.++.+|.+.+.|.++++.+..
T Consensus 455 ~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 455 DGTTVPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred CCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence 663 789999999999999999998764
No 412
>PRK10115 protease 2; Provisional
Probab=80.13 E-value=10 Score=32.80 Aligned_cols=33 Identities=12% Similarity=0.091 Sum_probs=21.7
Q ss_pred cceEEEEEccCCCEEEEEee-----CCeEEEEeecCCCCc
Q 032092 31 YQMRCVAAFPDQQGFWVGSI-----EGRVGVHHLDDSQQS 65 (147)
Q Consensus 31 ~~i~~la~spdg~~l~~g~~-----dg~i~i~~~d~~~~~ 65 (147)
..+..+.+||||++|+.+.. .-+|++ .|+.++.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v--~d~~tg~ 164 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRF--RNLETGN 164 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEE--EECCCCC
Confidence 34778899999998886532 223555 6665554
No 413
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=79.63 E-value=33 Score=28.21 Aligned_cols=50 Identities=18% Similarity=0.190 Sum_probs=27.2
Q ss_pred CCeEEEEECCCCccceeEecCCCCcc-eEEEEEc--cCCC-EEEEEeeCCeEEEE
Q 032092 7 DRNLVVFNLQNPQTEFKRINSPLKYQ-MRCVAAF--PDQQ-GFWVGSIEGRVGVH 57 (147)
Q Consensus 7 dg~v~iwdi~~~~~~~~~~~~~~~~~-i~~la~s--pdg~-~l~~g~~dg~i~i~ 57 (147)
..++.+||+.+.+ +.+++.-+.+.. ...|.|. |+.. -|+.+...++|..|
T Consensus 221 G~~l~vWD~~~r~-~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~ 274 (461)
T PF05694_consen 221 GHSLHVWDWSTRK-LLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRF 274 (461)
T ss_dssp --EEEEEETTTTE-EEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEE
T ss_pred cCeEEEEECCCCc-EeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEE
Confidence 4689999999985 556665443332 3455554 4433 46666667777664
No 414
>PRK13616 lipoprotein LpqB; Provisional
Probab=78.81 E-value=16 Score=31.00 Aligned_cols=30 Identities=3% Similarity=-0.217 Sum_probs=20.3
Q ss_pred ceEEEEEccCCCEEEEEe------eCCeEEEEeecC
Q 032092 32 QMRCVAAFPDQQGFWVGS------IEGRVGVHHLDD 61 (147)
Q Consensus 32 ~i~~la~spdg~~l~~g~------~dg~i~i~~~d~ 61 (147)
.+.+.++||||+.+|.-. .|..-.||-.+.
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~ 386 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL 386 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC
Confidence 477899999999887655 244445544554
No 415
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=77.12 E-value=27 Score=25.82 Aligned_cols=56 Identities=18% Similarity=0.347 Sum_probs=35.4
Q ss_pred eecCCeEEEEECCCCc----cceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcc
Q 032092 4 GTADRNLVVFNLQNPQ----TEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSK 66 (147)
Q Consensus 4 gs~dg~v~iwdi~~~~----~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~ 66 (147)
....++|.+|...... +..+.+.-+ ..+.+++|. ++.+++|..++.. + +|..++..
T Consensus 110 va~kk~i~i~~~~~~~~~f~~~~ke~~lp--~~~~~i~~~--~~~i~v~~~~~f~-~--idl~~~~~ 169 (275)
T PF00780_consen 110 VAVKKKILIYEWNDPRNSFSKLLKEISLP--DPPSSIAFL--GNKICVGTSKGFY-L--IDLNTGSP 169 (275)
T ss_pred EEECCEEEEEEEECCcccccceeEEEEcC--CCcEEEEEe--CCEEEEEeCCceE-E--EecCCCCc
Confidence 3445688888877642 223333322 468899998 7888888877755 4 46665443
No 416
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=76.84 E-value=6.7 Score=18.74 Aligned_cols=24 Identities=29% Similarity=0.117 Sum_probs=17.2
Q ss_pred eEEEEEccCCCEEEEEeeCCeEEE
Q 032092 33 MRCVAAFPDQQGFWVGSIEGRVGV 56 (147)
Q Consensus 33 i~~la~spdg~~l~~g~~dg~i~i 56 (147)
...|+++++|+.+++=+...+|.+
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~v 27 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQV 27 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEE
Confidence 367888888877777666666655
No 417
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=75.96 E-value=13 Score=23.24 Aligned_cols=28 Identities=4% Similarity=0.008 Sum_probs=21.3
Q ss_pred EEEEEecCCCeEEEeC-CCCcEEEeecCC
Q 032092 113 VIVLFVQIHHTFATAG-SDGAFNFWDKDS 140 (147)
Q Consensus 113 ~~~~fspdg~~latg~-~Dg~i~iWd~~~ 140 (147)
+.++++|++++|..++ ..+.|+++..++
T Consensus 57 NGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 57 NGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred ceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 4679999997765554 478999998654
No 418
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=74.98 E-value=13 Score=31.48 Aligned_cols=60 Identities=17% Similarity=0.270 Sum_probs=34.2
Q ss_pred eecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcce
Q 032092 4 GTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKN 67 (147)
Q Consensus 4 gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~ 67 (147)
|+..+-+-.|+.++.-.+..........+|.+|--.|+++ |.+|+.+|-++. ++..++..
T Consensus 392 gs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~---~pe~~~v~ 451 (671)
T COG3292 392 GSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR---DPESGRVL 451 (671)
T ss_pred EecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEec---Cccccchh
Confidence 3343334445555521222222222334678888788877 899999998874 76654443
No 419
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=74.25 E-value=7 Score=20.30 Aligned_cols=21 Identities=14% Similarity=0.099 Sum_probs=18.8
Q ss_pred ceEEEEEccCCCEEEEEeeCC
Q 032092 32 QMRCVAAFPDQQGFWVGSIEG 52 (147)
Q Consensus 32 ~i~~la~spdg~~l~~g~~dg 52 (147)
....|++.++|+.+++|..++
T Consensus 14 ~~~~IavD~~GNiYv~G~T~~ 34 (38)
T PF06739_consen 14 YGNGIAVDSNGNIYVTGYTNG 34 (38)
T ss_pred eEEEEEECCCCCEEEEEeecC
Confidence 478999999999999999876
No 420
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=73.45 E-value=20 Score=22.56 Aligned_cols=14 Identities=14% Similarity=-0.140 Sum_probs=9.2
Q ss_pred EEEEecCCCeEEEe
Q 032092 114 IVLFVQIHHTFATA 127 (147)
Q Consensus 114 ~~~fspdg~~latg 127 (147)
.++.+||+..++-+
T Consensus 61 GVals~d~~~vlv~ 74 (89)
T PF03088_consen 61 GVALSPDESFVLVA 74 (89)
T ss_dssp EEEE-TTSSEEEEE
T ss_pred eEEEcCCCCEEEEE
Confidence 45999999865544
No 421
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=73.06 E-value=39 Score=29.62 Aligned_cols=83 Identities=10% Similarity=0.031 Sum_probs=46.8
Q ss_pred eEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEE-EeccCCceEEeeccceeeeecCCCcceeeeeeeeeeeeeec
Q 032092 33 MRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTF-KCHRDGSETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKS 111 (147)
Q Consensus 33 i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~-~~h~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (147)
|.+|+...-+..++....||+|.+ +|..+-+.+... ....... .+.++ .+.++.. +.. ..
T Consensus 262 V~si~~~~~~~~v~~~~~DGsI~~--~dr~t~~~~~~~~~~~~~~~---~v~s~------~~~Gf~f--p~~------~~ 322 (753)
T PF11635_consen 262 VVSITSPELDIVVAFAFSDGSIEF--RDRNTMKELNETRTNGEPPN---TVTSL------FQAGFHF--PCI------QP 322 (753)
T ss_pred EEEEEecccCcEEEEEEcCCeEEE--EecCcchhhcccccccCCcc---ccccc------ccccccc--ccC------CC
Confidence 666766666789999999999999 887765444333 0000000 01111 0111100 000 01
Q ss_pred eEEEEEecCCCeEEEeCCCCcEE
Q 032092 112 HVIVLFVQIHHTFATAGSDGAFN 134 (147)
Q Consensus 112 ~~~~~fspdg~~latg~~Dg~i~ 134 (147)
...++|||.+..++.-..||.+.
T Consensus 323 ~~~vafSPt~c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 323 PLHVAFSPTMCSLVQIDEDGKTK 345 (753)
T ss_pred CceEEECcccceEEEEecCCCce
Confidence 12359999998888888888865
No 422
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=72.72 E-value=18 Score=27.70 Aligned_cols=52 Identities=10% Similarity=0.101 Sum_probs=33.6
Q ss_pred cCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEe------eCCeEEEEee
Q 032092 6 ADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGS------IEGRVGVHHL 59 (147)
Q Consensus 6 ~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~------~dg~i~i~~~ 59 (147)
....|++||..+.+ -..........|++|.|..+.+.++.|. ....+..|++
T Consensus 14 ~C~~lC~yd~~~~q--W~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~ 71 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQ--WSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDF 71 (281)
T ss_pred CCCEEEEEECCCCE--eecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEec
Confidence 45689999998763 2223333456799999986666777765 3444555333
No 423
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=72.67 E-value=5.9 Score=32.13 Aligned_cols=34 Identities=12% Similarity=0.063 Sum_probs=29.2
Q ss_pred EEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092 114 IVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF 147 (147)
Q Consensus 114 ~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~ 147 (147)
+++.+|++++.|+..+=|.|.++|+.++..++.|
T Consensus 312 ~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmW 345 (415)
T PF14655_consen 312 SICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMW 345 (415)
T ss_pred EEEECCCCCEEEEEcCCCcEEEEECCCChhhhhh
Confidence 5899999999998888899999999988777643
No 424
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=71.53 E-value=45 Score=25.85 Aligned_cols=29 Identities=17% Similarity=0.068 Sum_probs=17.3
Q ss_pred cceEEEEEccCCCEEEEEeeCCeEEEEeecC
Q 032092 31 YQMRCVAAFPDQQGFWVGSIEGRVGVHHLDD 61 (147)
Q Consensus 31 ~~i~~la~spdg~~l~~g~~dg~i~i~~~d~ 61 (147)
..++.+.-++||+++++++ .|.+.+ .||.
T Consensus 145 gs~~~~~r~~dG~~vavs~-~G~~~~-s~~~ 173 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSS-RGNFYS-SWDP 173 (302)
T ss_dssp --EEEEEE-TTS-EEEEET-TSSEEE-EE-T
T ss_pred ceeEeEEECCCCcEEEEEC-cccEEE-EecC
Confidence 4578888899999888875 466543 3665
No 425
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=70.87 E-value=27 Score=28.15 Aligned_cols=31 Identities=13% Similarity=0.129 Sum_probs=18.5
Q ss_pred EEccCCCEEEE-EeeCCeEEEEeecCCCCcce
Q 032092 37 AAFPDQQGFWV-GSIEGRVGVHHLDDSQQSKN 67 (147)
Q Consensus 37 a~spdg~~l~~-g~~dg~i~i~~~d~~~~~~~ 67 (147)
+|.+||+.|+- +..||.-.+|.+|+.+++..
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~ 73 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEIT 73 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEE
Confidence 67899987665 45588877877999876543
No 426
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=70.69 E-value=20 Score=22.41 Aligned_cols=45 Identities=20% Similarity=0.274 Sum_probs=28.3
Q ss_pred CCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEE-EeeCCeEEE
Q 032092 7 DRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWV-GSIEGRVGV 56 (147)
Q Consensus 7 dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~-g~~dg~i~i 56 (147)
-+.|.-||-.+-+ ....... ..+-|+++|+++++.+ ....+.|++
T Consensus 35 ~~~Vvyyd~~~~~----~va~g~~-~aNGI~~s~~~k~lyVa~~~~~~I~v 80 (86)
T PF01731_consen 35 WGNVVYYDGKEVK----VVASGFS-FANGIAISPDKKYLYVASSLAHSIHV 80 (86)
T ss_pred CceEEEEeCCEeE----EeeccCC-CCceEEEcCCCCEEEEEeccCCeEEE
Confidence 3566678865432 2222222 3578999999887654 455788888
No 427
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.43 E-value=5 Score=36.50 Aligned_cols=94 Identities=12% Similarity=0.041 Sum_probs=55.5
Q ss_pred CCeEEEEECCCCccc-------eeEecCC--CCcceEEEEEccC-CCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCC
Q 032092 7 DRNLVVFNLQNPQTE-------FKRINSP--LKYQMRCVAAFPD-QQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDG 76 (147)
Q Consensus 7 dg~v~iwdi~~~~~~-------~~~~~~~--~~~~i~~la~spd-g~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~ 76 (147)
+-.|..||+++.... ++..... .-....++.|+|. ....|+...|+.|++ .-+..... .+..
T Consensus 123 g~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V--~~~~~~~~----~v~s-- 194 (1405)
T KOG3630|consen 123 GEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRV--KSTKQLAQ----NVTS-- 194 (1405)
T ss_pred CceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhh--hhhhhhhh----hhcc--
Confidence 447889999876421 1100000 0123567889997 456788888888887 43321111 1100
Q ss_pred ceEEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEee
Q 032092 77 SETCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWD 137 (147)
Q Consensus 77 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd 137 (147)
+++... .+.++|+|-|+.++.|-..|++.-|-
T Consensus 195 ---~p~t~~--------------------------~Tav~WSprGKQl~iG~nnGt~vQy~ 226 (1405)
T KOG3630|consen 195 ---FPVTNS--------------------------QTAVLWSPRGKQLFIGRNNGTEVQYE 226 (1405)
T ss_pred ---cCcccc--------------------------eeeEEeccccceeeEecCCCeEEEee
Confidence 111111 12249999999999999999998875
No 428
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.87 E-value=9.9 Score=34.73 Aligned_cols=56 Identities=16% Similarity=0.211 Sum_probs=38.9
Q ss_pred eEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecC
Q 032092 2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDD 61 (147)
Q Consensus 2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~ 61 (147)
|++..|+.|++.-+....+.+... +.....++++|+|.|+++++|-..|++.= +.+
T Consensus 172 av~l~dlsl~V~~~~~~~~~v~s~--p~t~~~Tav~WSprGKQl~iG~nnGt~vQ--y~P 227 (1405)
T KOG3630|consen 172 AVDLSDLSLRVKSTKQLAQNVTSF--PVTNSQTAVLWSPRGKQLFIGRNNGTEVQ--YEP 227 (1405)
T ss_pred hhhccccchhhhhhhhhhhhhccc--CcccceeeEEeccccceeeEecCCCeEEE--eec
Confidence 345667777777766543322221 23345799999999999999999999865 554
No 429
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=68.08 E-value=48 Score=24.73 Aligned_cols=25 Identities=28% Similarity=0.235 Sum_probs=20.0
Q ss_pred ceEEEEEccCCCEEEEEe---eCCeEEE
Q 032092 32 QMRCVAAFPDQQGFWVGS---IEGRVGV 56 (147)
Q Consensus 32 ~i~~la~spdg~~l~~g~---~dg~i~i 56 (147)
+|.++++||||..+|.-. .++++.+
T Consensus 113 ~I~~l~vSpDG~RvA~v~~~~~~~~v~v 140 (253)
T PF10647_consen 113 RITALRVSPDGTRVAVVVEDGGGGRVYV 140 (253)
T ss_pred ceEEEEECCCCcEEEEEEecCCCCeEEE
Confidence 799999999999987655 3577766
No 430
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=65.33 E-value=1.6 Score=20.40 Aligned_cols=9 Identities=22% Similarity=0.209 Sum_probs=7.2
Q ss_pred EEecCCCeE
Q 032092 116 LFVQIHHTF 124 (147)
Q Consensus 116 ~fspdg~~l 124 (147)
.|||+|+++
T Consensus 7 ~FSp~Grl~ 15 (23)
T PF10584_consen 7 TFSPDGRLF 15 (23)
T ss_dssp SBBTTSSBH
T ss_pred eECCCCeEE
Confidence 699999863
No 431
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=65.19 E-value=28 Score=26.42 Aligned_cols=37 Identities=11% Similarity=0.003 Sum_probs=30.3
Q ss_pred EEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEec
Q 032092 35 CVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCH 73 (147)
Q Consensus 35 ~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h 73 (147)
-+++.-+|+.+++.-.-|+|.. +|+.+|+.+.+++-.
T Consensus 216 Gm~ID~eG~L~Va~~ng~~V~~--~dp~tGK~L~eiklP 252 (310)
T KOG4499|consen 216 GMTIDTEGNLYVATFNGGTVQK--VDPTTGKILLEIKLP 252 (310)
T ss_pred cceEccCCcEEEEEecCcEEEE--ECCCCCcEEEEEEcC
Confidence 4566667899999888899988 999999998887643
No 432
>PHA02713 hypothetical protein; Provisional
Probab=64.42 E-value=33 Score=28.85 Aligned_cols=24 Identities=0% Similarity=-0.115 Sum_probs=17.7
Q ss_pred CCCeEEEeCCCC--cEEEeecCCcee
Q 032092 120 IHHTFATAGSDG--AFNFWDKDSKQR 143 (147)
Q Consensus 120 dg~~latg~~Dg--~i~iWd~~~~~~ 143 (147)
+|+..+.||.|| .+..+|..+.+.
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYTYEW 537 (557)
T ss_pred CCEEEEEeeecceeehhhcCcccccc
Confidence 667888888887 677777766543
No 433
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=64.02 E-value=19 Score=30.40 Aligned_cols=57 Identities=5% Similarity=0.101 Sum_probs=38.9
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCC
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDS 62 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~ 62 (147)
+|+|+.-|-|+|||--.-.. ++...+....|.-|..+.+|+.+++.+ ..++.+ .|++
T Consensus 576 Ia~as~kGDirLyDRig~rA--KtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL--~d~~ 632 (776)
T COG5167 576 IAAASRKGDIRLYDRIGKRA--KTALPGLGDAIKHIDVTANGKHILATC-KNYLLL--TDVP 632 (776)
T ss_pred EEEecCCCceeeehhhcchh--hhcCcccccceeeeEeecCCcEEEEee-cceEEE--Eecc
Confidence 57899999999999654221 122223334688999999999877655 467777 5654
No 434
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=63.70 E-value=16 Score=29.40 Aligned_cols=13 Identities=8% Similarity=0.163 Sum_probs=6.1
Q ss_pred ecCCCCcceeEEE
Q 032092 59 LDDSQQSKNFTFK 71 (147)
Q Consensus 59 ~d~~~~~~~~~~~ 71 (147)
.|+.+|..+..++
T Consensus 15 ~D~~TG~~VtrLT 27 (386)
T PF14583_consen 15 IDPDTGHRVTRLT 27 (386)
T ss_dssp E-TTT--EEEE-S
T ss_pred eCCCCCceEEEec
Confidence 5777777776664
No 435
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=63.46 E-value=14 Score=18.98 Aligned_cols=21 Identities=14% Similarity=0.129 Sum_probs=15.2
Q ss_pred CCCeEEEeCCCCcEEEeecCC
Q 032092 120 IHHTFATAGSDGAFNFWDKDS 140 (147)
Q Consensus 120 dg~~latg~~Dg~i~iWd~~~ 140 (147)
.+..+..++.||.++..|.++
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 345677778899999999864
No 436
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=62.93 E-value=47 Score=27.73 Aligned_cols=26 Identities=4% Similarity=0.134 Sum_probs=20.1
Q ss_pred EEecCCCeEEEeCCCCcEEEeecCCce
Q 032092 116 LFVQIHHTFATAGSDGAFNFWDKDSKQ 142 (147)
Q Consensus 116 ~fspdg~~latg~~Dg~i~iWd~~~~~ 142 (147)
++||.+.+|++- ..|+|+++.++++.
T Consensus 364 ~~Sp~~~~Ll~e-~~gki~~~~l~Nr~ 389 (733)
T COG4590 364 AMSPNQAYLLSE-DQGKIRLAQLENRN 389 (733)
T ss_pred eeCcccchheee-cCCceEEEEecCCC
Confidence 899999888874 35678888887654
No 437
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=62.43 E-value=72 Score=24.80 Aligned_cols=47 Identities=11% Similarity=0.092 Sum_probs=24.9
Q ss_pred eEeecCCeEEEEECCCCcc--ceeEec---CCCCcceEEEEEccC----CCEEEEEe
Q 032092 2 VVGTADRNLVVFNLQNPQT--EFKRIN---SPLKYQMRCVAAFPD----QQGFWVGS 49 (147)
Q Consensus 2 ~~gs~dg~v~iwdi~~~~~--~~~~~~---~~~~~~i~~la~spd----g~~l~~g~ 49 (147)
.++...|.|++++ ..+.. ++..+. .........++++|+ +..+++.+
T Consensus 16 ~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t 71 (331)
T PF07995_consen 16 LVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYT 71 (331)
T ss_dssp EEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEE
T ss_pred EEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEE
Confidence 4556688999999 44432 222221 112235789999995 44444444
No 438
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=61.89 E-value=57 Score=27.95 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=17.5
Q ss_pred EEecCCCeEEEe-CCCCcEEEeecCCc
Q 032092 116 LFVQIHHTFATA-GSDGAFNFWDKDSK 141 (147)
Q Consensus 116 ~fspdg~~latg-~~Dg~i~iWd~~~~ 141 (147)
+|.+||++|+.+ |+-=.-+|||-..+
T Consensus 162 CWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 162 CWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred EecCcCCEEEEEeCCeEEEEEecCchh
Confidence 899999765544 44446789996443
No 439
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=61.81 E-value=20 Score=32.22 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=18.8
Q ss_pred EccCCCEEEEEeeCCeEEEEe
Q 032092 38 AFPDQQGFWVGSIEGRVGVHH 58 (147)
Q Consensus 38 ~spdg~~l~~g~~dg~i~i~~ 58 (147)
.||||+.||....||.++.|-
T Consensus 243 lSpDGtv~a~a~~dG~v~f~Q 263 (1283)
T KOG1916|consen 243 LSPDGTVFAWAISDGSVGFYQ 263 (1283)
T ss_pred eCCCCcEEEEeecCCccceee
Confidence 799999999999999988743
No 440
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=59.91 E-value=19 Score=17.37 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=18.9
Q ss_pred ceEEEEEccCCCEEEEEeeCCeEEE
Q 032092 32 QMRCVAAFPDQQGFWVGSIEGRVGV 56 (147)
Q Consensus 32 ~i~~la~spdg~~l~~g~~dg~i~i 56 (147)
.|.+|+.++ .+++++++-+.+||
T Consensus 3 ~i~aia~g~--~~vavaTS~~~lRi 25 (27)
T PF12341_consen 3 EIEAIAAGD--SWVAVATSAGYLRI 25 (27)
T ss_pred eEEEEEccC--CEEEEEeCCCeEEe
Confidence 477888774 68899999999998
No 441
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=57.77 E-value=83 Score=24.01 Aligned_cols=95 Identities=14% Similarity=0.137 Sum_probs=49.2
Q ss_pred eEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCceEEeeccceee
Q 032092 9 NLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSETCSVISFTSI 88 (147)
Q Consensus 9 ~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~~~~v~~~~~~ 88 (147)
.|+.+|+.+++.. ....-+...=---|+... .+.+..-=.++...+ +|..+.+.+.+|.-. .++ +
T Consensus 69 ~l~~~d~~tg~~~-~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f~--yd~~tl~~~~~~~y~-~EG--W-------- 133 (264)
T PF05096_consen 69 SLRKVDLETGKVL-QSVPLPPRYFGEGITILG-DKLYQLTWKEGTGFV--YDPNTLKKIGTFPYP-GEG--W-------- 133 (264)
T ss_dssp EEEEEETTTSSEE-EEEE-TTT--EEEEEEET-TEEEEEESSSSEEEE--EETTTTEEEEEEE-S-SS------------
T ss_pred EEEEEECCCCcEE-EEEECCccccceeEEEEC-CEEEEEEecCCeEEE--EccccceEEEEEecC-Ccc--e--------
Confidence 7889999998642 222212221112344432 334444455777777 777766666666422 111 1
Q ss_pred eecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeee
Q 032092 89 LAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLK 145 (147)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~ 145 (147)
-.+.||+.|....+...++++|-++.+..+
T Consensus 134 ---------------------------GLt~dg~~Li~SDGS~~L~~~dP~~f~~~~ 163 (264)
T PF05096_consen 134 ---------------------------GLTSDGKRLIMSDGSSRLYFLDPETFKEVR 163 (264)
T ss_dssp ---------------------------EEEECSSCEEEE-SSSEEEEE-TTT-SEEE
T ss_pred ---------------------------EEEcCCCEEEEECCccceEEECCcccceEE
Confidence 233566666666666678888876655443
No 442
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=57.72 E-value=28 Score=27.06 Aligned_cols=49 Identities=14% Similarity=0.123 Sum_probs=29.8
Q ss_pred CCeEEEEECCCCcccee--EecCCCCcceEEEEEccCCCEEEEEeeCCeEE
Q 032092 7 DRNLVVFNLQNPQTEFK--RINSPLKYQMRCVAAFPDQQGFWVGSIEGRVG 55 (147)
Q Consensus 7 dg~v~iwdi~~~~~~~~--~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~ 55 (147)
.+.|....+........ .+.......++.|++.|||..+++-+.+|.|.
T Consensus 280 ~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 280 GGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred CCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 45676666654432211 12222223589999999999998888888873
No 443
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=57.25 E-value=18 Score=20.62 Aligned_cols=18 Identities=22% Similarity=0.182 Sum_probs=15.7
Q ss_pred eEEEEEccCCCEEEEEee
Q 032092 33 MRCVAAFPDQQGFWVGSI 50 (147)
Q Consensus 33 i~~la~spdg~~l~~g~~ 50 (147)
++++++-|||+.+++|..
T Consensus 3 ~~~~~~q~DGkIlv~G~~ 20 (55)
T TIGR02608 3 AYAVAVQSDGKILVAGYV 20 (55)
T ss_pred eEEEEECCCCcEEEEEEe
Confidence 578999999999999875
No 444
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=56.91 E-value=30 Score=28.46 Aligned_cols=47 Identities=11% Similarity=0.056 Sum_probs=24.6
Q ss_pred EeecCCeEEEEECCCCccceeEec--CC---------------CCcceEEEEEccCCCEEEEEe
Q 032092 3 VGTADRNLVVFNLQNPQTEFKRIN--SP---------------LKYQMRCVAAFPDQQGFWVGS 49 (147)
Q Consensus 3 ~gs~dg~v~iwdi~~~~~~~~~~~--~~---------------~~~~i~~la~spdg~~l~~g~ 49 (147)
++-.+|.|+.|||..+..|...-+ -+ ......-|+.|.||++|.+.+
T Consensus 329 s~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 329 SNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp EETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 445689999999998766533211 00 001235688899998876543
No 445
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=56.60 E-value=1e+02 Score=24.67 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=22.1
Q ss_pred EEEEEecCCCeEEEeCCCCcEEEeecCC
Q 032092 113 VIVLFVQIHHTFATAGSDGAFNFWDKDS 140 (147)
Q Consensus 113 ~~~~fspdg~~latg~~Dg~i~iWd~~~ 140 (147)
.+++.-|..+.|++-..+|.|.+|++..
T Consensus 193 ~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 193 VQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp EEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred eeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3457778779999999999999999974
No 446
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=56.56 E-value=58 Score=24.75 Aligned_cols=53 Identities=17% Similarity=0.320 Sum_probs=32.1
Q ss_pred CeEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEcc--C-C-CEEEEEeeCCeEEE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFP--D-Q-QGFWVGSIEGRVGV 56 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~sp--d-g-~~l~~g~~dg~i~i 56 (147)
|+.|+++|.|.|.|-+..+. ..+..-+ ..|+ .|+.+- | . -++++++-||.|.+
T Consensus 198 LViGTE~~~i~iLd~~af~i-l~~~~lp-svPv-~i~~~G~~devdyRI~Va~Rdg~iy~ 254 (257)
T PF14779_consen 198 LVIGTESGEIYILDPQAFTI-LKQVQLP-SVPV-FISVSGQYDEVDYRIVVACRDGKIYT 254 (257)
T ss_pred EEEEecCCeEEEECchhhee-EEEEecC-CCce-EEEEEeeeeccceEEEEEeCCCEEEE
Confidence 68899999999999998754 2333222 1232 222221 1 2 24667777888765
No 447
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=55.95 E-value=45 Score=28.27 Aligned_cols=18 Identities=17% Similarity=0.165 Sum_probs=15.0
Q ss_pred CCEEEEEeeCCeEEEEeecC
Q 032092 42 QQGFWVGSIEGRVGVHHLDD 61 (147)
Q Consensus 42 g~~l~~g~~dg~i~i~~~d~ 61 (147)
..++|+++..|.|++ +|.
T Consensus 573 sGyIa~as~kGDirL--yDR 590 (776)
T COG5167 573 SGYIAAASRKGDIRL--YDR 590 (776)
T ss_pred CceEEEecCCCceee--ehh
Confidence 458999999999999 664
No 448
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=55.68 E-value=37 Score=19.94 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=20.1
Q ss_pred CCEEEEEeeCCeEEEEeecCCCCcc
Q 032092 42 QQGFWVGSIEGRVGVHHLDDSQQSK 66 (147)
Q Consensus 42 g~~l~~g~~dg~i~i~~~d~~~~~~ 66 (147)
.+.|+.-+.+|+|+|+-+|..+++.
T Consensus 29 ~N~Fav~~e~~~iKIfkyd~~tNei 53 (63)
T PF14157_consen 29 HNHFAVVDEDGQIKIFKYDEDTNEI 53 (63)
T ss_dssp TTEEEEE-ETTEEEEEEEETTTTEE
T ss_pred CCEEEEEecCCeEEEEEeCCCCCeE
Confidence 6789998999999999999876543
No 449
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=55.13 E-value=83 Score=24.78 Aligned_cols=28 Identities=7% Similarity=-0.072 Sum_probs=21.9
Q ss_pred eEEEEEccCCCEEEEEeeCCeEEEEeec
Q 032092 33 MRCVAAFPDQQGFWVGSIEGRVGVHHLD 60 (147)
Q Consensus 33 i~~la~spdg~~l~~g~~dg~i~i~~~d 60 (147)
-.-|+++|.+...++....+...+++-+
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~ 52 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGN 52 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCC
Confidence 4579999999888888888888884333
No 450
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=53.87 E-value=45 Score=27.03 Aligned_cols=20 Identities=10% Similarity=-0.090 Sum_probs=15.1
Q ss_pred ceEEEEEccCCCEEEEEeeC
Q 032092 32 QMRCVAAFPDQQGFWVGSIE 51 (147)
Q Consensus 32 ~i~~la~spdg~~l~~g~~d 51 (147)
.-+.|+|+|||+.+++-++.
T Consensus 178 ~g~~l~f~pDG~Lyvs~G~~ 197 (399)
T COG2133 178 FGGRLVFGPDGKLYVTTGSN 197 (399)
T ss_pred CcccEEECCCCcEEEEeCCC
Confidence 45789999999877765544
No 451
>PRK10115 protease 2; Provisional
Probab=53.59 E-value=1.5e+02 Score=25.73 Aligned_cols=44 Identities=9% Similarity=-0.047 Sum_probs=26.9
Q ss_pred eecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeC
Q 032092 4 GTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIE 51 (147)
Q Consensus 4 gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~d 51 (147)
|++.-.|++.|+.+++.....+. ..-..++|+||++.|+....+
T Consensus 149 G~E~~~l~v~d~~tg~~l~~~i~----~~~~~~~w~~D~~~~~y~~~~ 192 (686)
T PRK10115 149 SRRQYGIRFRNLETGNWYPELLD----NVEPSFVWANDSWTFYYVRKH 192 (686)
T ss_pred CcEEEEEEEEECCCCCCCCcccc----CcceEEEEeeCCCEEEEEEec
Confidence 44455788888887742111111 111469999999988776653
No 452
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=52.46 E-value=1.5e+02 Score=25.23 Aligned_cols=53 Identities=17% Similarity=0.223 Sum_probs=28.6
Q ss_pred CeEEEEECCCCccceeEecC-CCCcceEEEEEccCCCEEEEEeeC-CeEE---EEeecCCC
Q 032092 8 RNLVVFNLQNPQTEFKRINS-PLKYQMRCVAAFPDQQGFWVGSIE-GRVG---VHHLDDSQ 63 (147)
Q Consensus 8 g~v~iwdi~~~~~~~~~~~~-~~~~~i~~la~spdg~~l~~g~~d-g~i~---i~~~d~~~ 63 (147)
..+..||.++.+- ..... +....-.++++ -++..+++|+.| |.-. +|-+|+++
T Consensus 301 ~~ve~yd~~~~~w--~~~a~m~~~r~~~~~~~-~~~~lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 301 RSVECYDPKTNEW--SSLAPMPSPRCRVGVAV-LNGKLYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred ceeEEecCCcCcE--eecCCCCcccccccEEE-ECCEEEEEccccCCCcccceEEEecCCC
Confidence 4788899988731 11111 11111234444 346899999999 3322 23367664
No 453
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=51.27 E-value=20 Score=19.04 Aligned_cols=26 Identities=12% Similarity=0.289 Sum_probs=15.6
Q ss_pred ecCCCeEEEeCCCC------cEEEeecCCcee
Q 032092 118 VQIHHTFATAGSDG------AFNFWDKDSKQR 143 (147)
Q Consensus 118 spdg~~latg~~Dg------~i~iWd~~~~~~ 143 (147)
.+++++++-||.+. .+.++|+++++.
T Consensus 10 ~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W 41 (49)
T PF13418_consen 10 IGDNSIYVFGGRDSSGSPLNDLWIFDIETNTW 41 (49)
T ss_dssp E-TTEEEEE--EEE-TEE---EEEEETTTTEE
T ss_pred EeCCeEEEECCCCCCCcccCCEEEEECCCCEE
Confidence 45667777777643 688888887754
No 454
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=50.57 E-value=94 Score=25.57 Aligned_cols=26 Identities=12% Similarity=0.181 Sum_probs=21.6
Q ss_pred EEEecCCCeEEEeCCCCcEEEeecCC
Q 032092 115 VLFVQIHHTFATAGSDGAFNFWDKDS 140 (147)
Q Consensus 115 ~~fspdg~~latg~~Dg~i~iWd~~~ 140 (147)
++-.|.|+.++.+..+|.+.|+.++.
T Consensus 49 l~vDP~~R~i~v~a~e~~~~v~~l~~ 74 (504)
T PF10433_consen 49 LAVDPSGRCIAVSAYEGNFLVYPLNR 74 (504)
T ss_dssp EEE-TTSSEEEEEEBTTEEEEEE-SS
T ss_pred EEECCcCCEEEEEecCCeEEEEEecc
Confidence 38899999999999999999998876
No 455
>cd03444 Thioesterase_II_repeat1 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=50.13 E-value=43 Score=21.28 Aligned_cols=17 Identities=18% Similarity=0.356 Sum_probs=14.6
Q ss_pred EEecCCCeEEEeCCCCc
Q 032092 116 LFVQIHHTFATAGSDGA 132 (147)
Q Consensus 116 ~fspdg~~latg~~Dg~ 132 (147)
-|+++|+++|++.+++.
T Consensus 87 l~~~~G~LvAs~~Q~~l 103 (104)
T cd03444 87 IFTRDGELVASVAQEGL 103 (104)
T ss_pred EECCCCCEEEEEEEeee
Confidence 79999999999987763
No 456
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=49.27 E-value=5.3 Score=33.18 Aligned_cols=56 Identities=9% Similarity=0.154 Sum_probs=38.2
Q ss_pred eecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCC
Q 032092 4 GTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQ 63 (147)
Q Consensus 4 gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~ 63 (147)
+-..+.+.|||+.+... .+++.....+-.-++|+|-+..++.|...|.+.| .+-.+
T Consensus 93 Aek~~piylwd~n~eyt--qqLE~gg~~s~sll~wsKg~~el~ig~~~gn~vi--ynhgt 148 (615)
T KOG2247|consen 93 AEKTGPIYLWDVNSEYT--QQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVI--YNHGT 148 (615)
T ss_pred hhcCCCeeechhhhhhH--HHHhccCcchHHHHhhccCCccccccccccceEE--Eeccc
Confidence 45578899999987532 2333333333333789998889999999999999 55443
No 457
>PHA02713 hypothetical protein; Provisional
Probab=49.23 E-value=1.6e+02 Score=24.79 Aligned_cols=14 Identities=21% Similarity=0.370 Sum_probs=10.0
Q ss_pred cCCCEEEEEeeCCe
Q 032092 40 PDQQGFWVGSIEGR 53 (147)
Q Consensus 40 pdg~~l~~g~~dg~ 53 (147)
-+|+.++.|+.++.
T Consensus 350 ~~g~IYviGG~~~~ 363 (557)
T PHA02713 350 IDDTIYAIGGQNGT 363 (557)
T ss_pred ECCEEEEECCcCCC
Confidence 45788888887653
No 458
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=48.14 E-value=1.5e+02 Score=24.18 Aligned_cols=52 Identities=19% Similarity=0.237 Sum_probs=32.8
Q ss_pred CeEeecCCeEEEEECCCCc-ccee-EecCCCCcceEEEEEccCCCEEEEEeeCCeEEE
Q 032092 1 MVVGTADRNLVVFNLQNPQ-TEFK-RINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGV 56 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~-~~~~-~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i 56 (147)
|++||..|.++||+....+ ++-. .++...+.||-.|+.. .|+.++.+..+.|
T Consensus 40 IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G----~F~s~~~~~~LaV 93 (418)
T PF14727_consen 40 IIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECG----KFVSGSEDLQLAV 93 (418)
T ss_pred EEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEec----cccCCCCcceEEE
Confidence 5789999999999996643 2111 2333445688888763 3355555555555
No 459
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=46.86 E-value=1.2e+02 Score=22.59 Aligned_cols=18 Identities=22% Similarity=0.119 Sum_probs=14.9
Q ss_pred ceEEEEEccCCCEEEEEe
Q 032092 32 QMRCVAAFPDQQGFWVGS 49 (147)
Q Consensus 32 ~i~~la~spdg~~l~~g~ 49 (147)
.+.+.++||||+.+|.-.
T Consensus 25 ~~~s~AvS~dg~~~A~v~ 42 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVS 42 (253)
T ss_pred cccceEECCCCCeEEEEE
Confidence 588999999999877654
No 460
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=46.12 E-value=1.5e+02 Score=23.38 Aligned_cols=17 Identities=6% Similarity=-0.211 Sum_probs=14.0
Q ss_pred ceEEEEEccCCCEEEEE
Q 032092 32 QMRCVAAFPDQQGFWVG 48 (147)
Q Consensus 32 ~i~~la~spdg~~l~~g 48 (147)
....|+|.++|+.+++-
T Consensus 15 ~P~~ia~d~~G~l~V~e 31 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAE 31 (367)
T ss_pred CCceeeECCCCCEEEEe
Confidence 35789999999988774
No 461
>PHA03098 kelch-like protein; Provisional
Probab=45.80 E-value=1.7e+02 Score=24.11 Aligned_cols=24 Identities=8% Similarity=0.343 Sum_probs=17.7
Q ss_pred CCCeEEEeCCC-----CcEEEeecCCcee
Q 032092 120 IHHTFATAGSD-----GAFNFWDKDSKQR 143 (147)
Q Consensus 120 dg~~latg~~D-----g~i~iWd~~~~~~ 143 (147)
+++.++.||.+ ..+.++|.++.+.
T Consensus 487 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 487 NNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred CCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 67777887765 4788999887654
No 462
>PHA02790 Kelch-like protein; Provisional
Probab=45.27 E-value=1.7e+02 Score=24.00 Aligned_cols=24 Identities=13% Similarity=0.228 Sum_probs=14.9
Q ss_pred cCCCEEEEEeeCCeEEEEeecCCC
Q 032092 40 PDQQGFWVGSIEGRVGVHHLDDSQ 63 (147)
Q Consensus 40 pdg~~l~~g~~dg~i~i~~~d~~~ 63 (147)
-+++.+++|+.++.-.++.||+.+
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~ 340 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGD 340 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCC
Confidence 568888998875432233367654
No 463
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=44.92 E-value=97 Score=22.90 Aligned_cols=37 Identities=19% Similarity=0.116 Sum_probs=18.9
Q ss_pred EEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEE
Q 032092 34 RCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFK 71 (147)
Q Consensus 34 ~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~ 71 (147)
..++.++.+..|++ ...+.|.+|++.....+...+|.
T Consensus 21 ~~~c~~g~d~Lfva-~~g~~Vev~~l~~~~~~~~~~F~ 57 (215)
T PF14761_consen 21 TAVCCGGPDALFVA-ASGCKVEVYDLEQEECPLLCTFS 57 (215)
T ss_pred ceeeccCCceEEEE-cCCCEEEEEEcccCCCceeEEEc
Confidence 44554443334443 55678988444432344555554
No 464
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=44.90 E-value=2.1e+02 Score=24.83 Aligned_cols=22 Identities=5% Similarity=-0.031 Sum_probs=16.3
Q ss_pred EEecCCCeEEEeCCCCcEEEee
Q 032092 116 LFVQIHHTFATAGSDGAFNFWD 137 (147)
Q Consensus 116 ~fspdg~~latg~~Dg~i~iWd 137 (147)
...|||+.+.+-|....|.++-
T Consensus 81 tst~d~qsiLaVGf~~~v~l~~ 102 (631)
T PF12234_consen 81 TSTPDGQSILAVGFPHHVLLYT 102 (631)
T ss_pred eecCCCCEEEEEEcCcEEEEEE
Confidence 4457888877777888888774
No 465
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=44.24 E-value=32 Score=30.57 Aligned_cols=27 Identities=15% Similarity=0.164 Sum_probs=22.4
Q ss_pred EEecCCCeEEEeCCCCcEEEeecCCce
Q 032092 116 LFVQIHHTFATAGSDGAFNFWDKDSKQ 142 (147)
Q Consensus 116 ~fspdg~~latg~~Dg~i~iWd~~~~~ 142 (147)
.=||-|+.++.+..||.|+++|...++
T Consensus 21 qshp~~~s~v~~~~d~si~lfn~~~r~ 47 (1636)
T KOG3616|consen 21 QSHPGGQSFVLAHQDGSIILFNFIPRR 47 (1636)
T ss_pred eecCCCceEEEEecCCcEEEEeecccc
Confidence 667889999999999999999876543
No 466
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=44.09 E-value=84 Score=24.35 Aligned_cols=35 Identities=17% Similarity=0.045 Sum_probs=19.4
Q ss_pred eEEEEEccCCCEEEEEeeC------CeEEEEeecCCCCcceeEE
Q 032092 33 MRCVAAFPDQQGFWVGSIE------GRVGVHHLDDSQQSKNFTF 70 (147)
Q Consensus 33 i~~la~spdg~~l~~g~~d------g~i~i~~~d~~~~~~~~~~ 70 (147)
.-+|++.++|..+++.=.+ ..|.- ++.. |+....+
T Consensus 87 ~Egi~~~~~g~~~is~E~~~~~~~~p~I~~--~~~~-G~~~~~~ 127 (326)
T PF13449_consen 87 PEGIAVPPDGSFWISSEGGRTGGIPPRIRR--FDLD-GRVIRRF 127 (326)
T ss_pred hhHeEEecCCCEEEEeCCccCCCCCCEEEE--ECCC-CcccceE
Confidence 3478886666655554333 44544 7754 5554444
No 467
>KOG3611 consensus Semaphorins [Signal transduction mechanisms]
Probab=44.04 E-value=1.2e+02 Score=26.73 Aligned_cols=56 Identities=20% Similarity=0.326 Sum_probs=36.3
Q ss_pred CeEeecCCeEE-EEECCCCc----cceeEecC-CCCcceEEEEEccCCCEEEEEeeCCeEEE
Q 032092 1 MVVGTADRNLV-VFNLQNPQ----TEFKRINS-PLKYQMRCVAAFPDQQGFWVGSIEGRVGV 56 (147)
Q Consensus 1 l~~gs~dg~v~-iwdi~~~~----~~~~~~~~-~~~~~i~~la~spdg~~l~~g~~dg~i~i 56 (147)
|..|+++|+|. +-.+.... ..+..++- +...+|+.|.+++....|.+|+..|-++|
T Consensus 428 lflGTd~G~vlKvV~~~~~~~~~~~llEElqvf~~~~pI~~m~Ls~~~~~LyVgs~~gV~qv 489 (737)
T KOG3611|consen 428 LFLGTDAGTVLKVVSPGKESGKSNVLLEELQVFPDAEPIRSMQLSSKRGSLYVGSRSGVVQV 489 (737)
T ss_pred EEEecCCCeEEEEEecCCccCccceeEEEEeecCCCCceeEEEecccCCeEEEEccCcEEEe
Confidence 45788888763 44444411 01222221 22357999999999889999999998876
No 468
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=43.02 E-value=1.6e+02 Score=22.85 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=16.8
Q ss_pred ceEEEEEccCCCEEEEEeeCCe
Q 032092 32 QMRCVAAFPDQQGFWVGSIEGR 53 (147)
Q Consensus 32 ~i~~la~spdg~~l~~g~~dg~ 53 (147)
.+..|.+.|++..|++-+++|.
T Consensus 21 GlSgl~~~~~~~~~~avSD~g~ 42 (326)
T PF13449_consen 21 GLSGLDYDPDDGRFYAVSDRGP 42 (326)
T ss_pred cEeeEEEeCCCCEEEEEECCCC
Confidence 4788999977666666677777
No 469
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=42.59 E-value=1.7e+02 Score=27.08 Aligned_cols=107 Identities=10% Similarity=0.090 Sum_probs=0.0
Q ss_pred eEEEEECCCCcc--ceeEecCCCCcceEEEEEccCCCE-EEEEeeCCeEEEEeecCCCCcceeEEEeccCC-------ce
Q 032092 9 NLVVFNLQNPQT--EFKRINSPLKYQMRCVAAFPDQQG-FWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDG-------SE 78 (147)
Q Consensus 9 ~v~iwdi~~~~~--~~~~~~~~~~~~i~~la~spdg~~-l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~-------~~ 78 (147)
.|++.|..+++. .+..-.....+.+.++.|+..... +.....+-+-.++.-+. .....++++.+++. ..
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~-~~g~~ytyk~~~~g~~lellh~T 932 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSI-SSGFVYTYKFVRNGDKLELLHKT 932 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeecccccccccc-CCCceEEEEEEecCceeeeeecc
Q ss_pred EEeeccceeeeecCCCcceeeeeeeeeeeeeeceEEEEEecCCCeEEEeCCCCcEEEeecCCceeeecC
Q 032092 79 TCSVISFTSILAGDAPKYSSFYKVKRLHLFVKSHVIVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKVF 147 (147)
Q Consensus 79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~~ 147 (147)
..+-.-. |.+|-+.++.+| .-..+++||+..+++++.+
T Consensus 933 ~~~~~v~------------------------------Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~ 970 (1205)
T KOG1898|consen 933 EIPGPVG------------------------------AICPFQGRVLAG-VGRFLRLYDLGKKKLLRKC 970 (1205)
T ss_pred CCCccce------------------------------EEeccCCEEEEe-cccEEEEeeCChHHHHhhh
No 470
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=42.59 E-value=59 Score=28.53 Aligned_cols=55 Identities=11% Similarity=0.071 Sum_probs=36.4
Q ss_pred CeEeecCCeEEEEECCCCccceeE---------ecCC----CCcc----eEEEEEccCCCEEEEEeeCCeEE
Q 032092 1 MVVGTADRNLVVFNLQNPQTEFKR---------INSP----LKYQ----MRCVAAFPDQQGFWVGSIEGRVG 55 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~~~~~~~---------~~~~----~~~~----i~~la~spdg~~l~~g~~dg~i~ 55 (147)
++.+-.||+|.++|-.+.+..... +.+. ..++ ..-+||||.+..++.-..+|.+.
T Consensus 274 v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 274 VAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDEDGKTK 345 (753)
T ss_pred EEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEecCCCce
Confidence 356688999999998877432111 1111 1122 23478999999999988888855
No 471
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=42.16 E-value=1.8e+02 Score=23.45 Aligned_cols=24 Identities=8% Similarity=-0.003 Sum_probs=18.1
Q ss_pred cceEEEEEccCCCEEEEEeeCCeEE
Q 032092 31 YQMRCVAAFPDQQGFWVGSIEGRVG 55 (147)
Q Consensus 31 ~~i~~la~spdg~~l~~g~~dg~i~ 55 (147)
..+.++++.+++..++++ ..|.+.
T Consensus 281 ~~l~~v~~~~dg~l~l~g-~~G~l~ 304 (398)
T PLN00033 281 RRIQNMGWRADGGLWLLT-RGGGLY 304 (398)
T ss_pred cceeeeeEcCCCCEEEEe-CCceEE
Confidence 457899999998887765 557764
No 472
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=42.14 E-value=32 Score=30.12 Aligned_cols=28 Identities=29% Similarity=0.559 Sum_probs=24.2
Q ss_pred ceEEEEEecC-CCeEEEeCCCCcEEEeec
Q 032092 111 SHVIVLFVQI-HHTFATAGSDGAFNFWDK 138 (147)
Q Consensus 111 ~~~~~~fspd-g~~latg~~Dg~i~iWd~ 138 (147)
.|.-++|+|. .+.||.-...|.-.|||+
T Consensus 147 ~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i 175 (765)
T PF10214_consen 147 PHADVAFNPWDQRQFAIVDEKGNWSVWDI 175 (765)
T ss_pred ccceEEeccCccceEEEEeccCcEEEEEe
Confidence 3556899995 478999999999999999
No 473
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=41.78 E-value=1.6e+02 Score=25.46 Aligned_cols=60 Identities=18% Similarity=0.055 Sum_probs=35.5
Q ss_pred EEEEccCCCEEEEEeeCCe-EEEEeecCCCCcceeEEE---eccCCceEEeeccceeeeecCCC
Q 032092 35 CVAAFPDQQGFWVGSIEGR-VGVHHLDDSQQSKNFTFK---CHRDGSETCSVISFTSILAGDAP 94 (147)
Q Consensus 35 ~la~spdg~~l~~g~~dg~-i~i~~~d~~~~~~~~~~~---~h~~~~~~~~v~~~~~~~~~~~~ 94 (147)
-|||+|..+.+|++|.-.. |.|+.+-...-..++.++ +.+.++.++.-+.+.+++.|...
T Consensus 343 liAfn~kaq~VAVASNTcn~ilVYSv~~s~mPniQqIqLe~~ERPKGiCFltdklLLilVGkqK 406 (671)
T PF15390_consen 343 LIAFNPKAQVVAVASNTCNIILVYSVTPSSMPNIQQIQLESNERPKGICFLTDKLLLILVGKQK 406 (671)
T ss_pred eeeeCCcCCEEEEEecCCcEEEEEEeccccCCCeeEEEcccCCCCceeeEccCCeEEEEecccc
Confidence 3799999999998886544 555333333322333332 33445667766666666666544
No 474
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=40.94 E-value=1.1e+02 Score=27.82 Aligned_cols=19 Identities=16% Similarity=0.148 Sum_probs=14.7
Q ss_pred ecCCCeEEEeCCCCcEEEeec
Q 032092 118 VQIHHTFATAGSDGAFNFWDK 138 (147)
Q Consensus 118 spdg~~latg~~Dg~i~iWd~ 138 (147)
+.+|+.|.+|-.| ..+|.+
T Consensus 190 ~e~GrIFf~g~~d--~nvyEl 208 (1263)
T COG5308 190 EEDGRIFFGGEND--PNVYEL 208 (1263)
T ss_pred ccCCcEEEecCCC--CCeEEE
Confidence 3479999998777 777865
No 475
>KOG2727 consensus Rab3 GTPase-activating protein, non-catalytic subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.08 E-value=29 Score=31.23 Aligned_cols=43 Identities=26% Similarity=0.104 Sum_probs=34.8
Q ss_pred EEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeEEEeccCCce
Q 032092 34 RCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSE 78 (147)
Q Consensus 34 ~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~h~~~~~ 78 (147)
..++.||+|++.|+.+.=|+|.+ +|+..+..+..++|-+....
T Consensus 325 e~lslSP~gtlAAVTD~lgRVlL--lDta~~ivvr~wKGYRDAsc 367 (1244)
T KOG2727|consen 325 EKLSLSPSGTLAAVTDSLGRVLL--LDTAALIVVRLWKGYRDASC 367 (1244)
T ss_pred ceeeeCCCccEEEEecccCcEEE--EehhhhhHHHHhccccccee
Confidence 46889999999999999999999 99887666667777776543
No 476
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=39.08 E-value=3.1e+02 Score=25.22 Aligned_cols=61 Identities=7% Similarity=0.171 Sum_probs=45.1
Q ss_pred eEeecCCeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEeeCCeEEEEeecCCCC
Q 032092 2 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQ 64 (147)
Q Consensus 2 ~~gs~dg~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~ 64 (147)
+.++-...|+||+..+.+.+ +++..+..++..+...-.|+.+++|+.-+++.+-.++..+|
T Consensus 842 llA~In~~vrLye~t~~~eL--r~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg 902 (1096)
T KOG1897|consen 842 LLAGINQSVRLYEWTTEREL--RIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEG 902 (1096)
T ss_pred EEEecCcEEEEEEcccccee--hhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCC
Confidence 35677889999999987432 23334456788888888899999999999998855554443
No 477
>COG2828 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.78 E-value=32 Score=27.07 Aligned_cols=30 Identities=13% Similarity=0.253 Sum_probs=21.6
Q ss_pred EEEecC-CCeEEEe-------------CCCCcEEEeecCCceee
Q 032092 115 VLFVQI-HHTFATA-------------GSDGAFNFWDKDSKQRL 144 (147)
Q Consensus 115 ~~fspd-g~~latg-------------~~Dg~i~iWd~~~~~~~ 144 (147)
+.|+|+ |+++|.. ...-.||||+.+++|.+
T Consensus 89 VD~sgNCGNl~AaVGpFAIe~GLV~a~~g~t~VRI~~~Nt~k~I 132 (378)
T COG2828 89 VDWSGNCGNLLAAVGPFAIEAGLVDAAEGVTAVRIWNVNTGKTI 132 (378)
T ss_pred ccCCCCccchhhccchhhhhhCcccCCCCceEEEEEeccCcceE
Confidence 478885 5766554 33457999999998865
No 478
>PHA03098 kelch-like protein; Provisional
Probab=38.11 E-value=2.3e+02 Score=23.36 Aligned_cols=26 Identities=4% Similarity=0.050 Sum_probs=16.9
Q ss_pred ecCCCeEEEeCCCC--------cEEEeecCCcee
Q 032092 118 VQIHHTFATAGSDG--------AFNFWDKDSKQR 143 (147)
Q Consensus 118 spdg~~latg~~Dg--------~i~iWd~~~~~~ 143 (147)
..+++.++.||.+. .+.+||.++.+.
T Consensus 435 ~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W 468 (534)
T PHA03098 435 YHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKW 468 (534)
T ss_pred EECCEEEEECCccCCCCCcccceEEEecCCCCce
Confidence 34667777776532 388888877653
No 479
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=37.68 E-value=1.7e+02 Score=21.88 Aligned_cols=59 Identities=17% Similarity=0.040 Sum_probs=28.0
Q ss_pred CeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEEEe-eCCeEEEEeecCCCCcceeEE
Q 032092 8 RNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWVGS-IEGRVGVHHLDDSQQSKNFTF 70 (147)
Q Consensus 8 g~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~g~-~dg~i~i~~~d~~~~~~~~~~ 70 (147)
..|++||+.+++..+.+...+. .+..=-+..-|+++..-. .||...+ +|.++-+.+.++
T Consensus 68 S~ir~~~L~~gq~~~s~~l~~~--~~FgEGit~~gd~~y~LTw~egvaf~--~d~~t~~~lg~~ 127 (262)
T COG3823 68 SKIRVSDLTTGQEIFSEKLAPD--TVFGEGITKLGDYFYQLTWKEGVAFK--YDADTLEELGRF 127 (262)
T ss_pred ceeEEEeccCceEEEEeecCCc--cccccceeeccceEEEEEeccceeEE--EChHHhhhhccc
Confidence 4799999999865332211110 111111111145544433 3555555 777655544443
No 480
>PRK13684 Ycf48-like protein; Provisional
Probab=37.47 E-value=2e+02 Score=22.42 Aligned_cols=24 Identities=25% Similarity=0.162 Sum_probs=16.6
Q ss_pred cceEEEEEccCCCEEEEEeeCCeEE
Q 032092 31 YQMRCVAAFPDQQGFWVGSIEGRVG 55 (147)
Q Consensus 31 ~~i~~la~spdg~~l~~g~~dg~i~ 55 (147)
..+.++++.|++.++++|. .|.+.
T Consensus 173 g~~~~i~~~~~g~~v~~g~-~G~i~ 196 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVSS-RGNFY 196 (334)
T ss_pred ceEEEEEECCCCeEEEEeC-CceEE
Confidence 3578899999886665544 56664
No 481
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=37.43 E-value=2.1e+02 Score=22.65 Aligned_cols=64 Identities=17% Similarity=0.156 Sum_probs=42.6
Q ss_pred eecCCeEEEEECCCCccceeEecCC--CCcceEEEEEccC------CCEEEEEeeCCeEEEEeecCCCCcceeEEEe
Q 032092 4 GTADRNLVVFNLQNPQTEFKRINSP--LKYQMRCVAAFPD------QQGFWVGSIEGRVGVHHLDDSQQSKNFTFKC 72 (147)
Q Consensus 4 gs~dg~v~iwdi~~~~~~~~~~~~~--~~~~i~~la~spd------g~~l~~g~~dg~i~i~~~d~~~~~~~~~~~~ 72 (147)
|..-|.|-+||..-. .++++.+. +. ...-|+..|- |..|+---.||+|.. +|..+++.+..++.
T Consensus 218 G~G~G~VdvFd~~G~--l~~r~as~g~LN-aPWG~a~APa~FG~~sg~lLVGNFGDG~Ina--FD~~sG~~~g~L~~ 289 (336)
T TIGR03118 218 GAGLGYVNVFTLNGQ--LLRRVASSGRLN-APWGLAIAPESFGSLSGALLVGNFGDGTINA--YDPQSGAQLGQLLD 289 (336)
T ss_pred CCCcceEEEEcCCCc--EEEEeccCCccc-CCceeeeChhhhCCCCCCeEEeecCCceeEE--ecCCCCceeeeecC
Confidence 455678999998853 34555432 22 2355777562 566666567999999 99888887766654
No 482
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=36.90 E-value=1.7e+02 Score=22.41 Aligned_cols=55 Identities=20% Similarity=0.254 Sum_probs=32.7
Q ss_pred CeEeecCCeEEEEECCCC-ccceeEecCCCCcceEEEEEccCCCEEEE-EeeCCeEEEEee
Q 032092 1 MVVGTADRNLVVFNLQNP-QTEFKRINSPLKYQMRCVAAFPDQQGFWV-GSIEGRVGVHHL 59 (147)
Q Consensus 1 l~~gs~dg~v~iwdi~~~-~~~~~~~~~~~~~~i~~la~spdg~~l~~-g~~dg~i~i~~~ 59 (147)
|+.|+++| +.+.|+.+. ..+.+.+ ...+|+++...+.-+.|++ ++....++.+++
T Consensus 16 lL~GTe~G-ly~~~~~~~~~~~~kl~---~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L 72 (302)
T smart00036 16 LLVGTEEG-LYVLNISDQPGTLEKLI---GRRSVTQIWVLEENNVLLMISGKKPQLYSHPL 72 (302)
T ss_pred EEEEeCCc-eEEEEcccCCCCeEEec---CcCceEEEEEEhhhCEEEEEeCCcceEEEEEH
Confidence 46788888 455556543 2333322 2346899999988766554 333444877444
No 483
>PHA02790 Kelch-like protein; Provisional
Probab=36.19 E-value=2.4e+02 Score=23.12 Aligned_cols=24 Identities=4% Similarity=0.084 Sum_probs=14.9
Q ss_pred CCCeEEEeCCC-----CcEEEeecCCcee
Q 032092 120 IHHTFATAGSD-----GAFNFWDKDSKQR 143 (147)
Q Consensus 120 dg~~latg~~D-----g~i~iWd~~~~~~ 143 (147)
+|+..+.||.+ ..|..||.++.+.
T Consensus 446 ~~~IYviGG~~~~~~~~~ve~Yd~~~~~W 474 (480)
T PHA02790 446 DNKLLLIGGFYRGSYIDTIEVYNNRTYSW 474 (480)
T ss_pred CCEEEEECCcCCCcccceEEEEECCCCeE
Confidence 55666666654 3577777766543
No 484
>TIGR03054 photo_alph_chp1 putative photosynthetic complex assembly protein. In twenty or so anoxygenic photosynthetic alpha-Proteobacteria known so far, a gene for a member of this protein family is present and is found in the vicinity of puhA, which encodes a component of the photosynthetic reaction center, and other genes associated with photosynthesis. This protein family is suggested, consequently, as a probable assembly factor for the photosynthetic reaction center, but its seems its actual function has not yet been demonstrated.
Probab=35.73 E-value=1.4e+02 Score=20.32 Aligned_cols=62 Identities=10% Similarity=0.030 Sum_probs=41.6
Q ss_pred EeecCCeEEEEECCCCccceeEecCCCCc----ceEEE-------EEccCCCEEEEEeeCCeEEEEeecCCCCcce
Q 032092 3 VGTADRNLVVFNLQNPQTEFKRINSPLKY----QMRCV-------AAFPDQQGFWVGSIEGRVGVHHLDDSQQSKN 67 (147)
Q Consensus 3 ~gs~dg~v~iwdi~~~~~~~~~~~~~~~~----~i~~l-------a~spdg~~l~~g~~dg~i~i~~~d~~~~~~~ 67 (147)
.+..||.|.++|..+++. +..+...... ..+.+ ...++.-+-++--.||.+.| .|+.++..+
T Consensus 46 ~d~~~G~v~V~~~~~G~~-va~~~~g~~GFvrgvlR~l~R~R~~~gv~~~~Pf~L~r~~dGrltL--~Dp~Tg~~i 118 (135)
T TIGR03054 46 EDRPDGAVAVVETPDGRL-VAILEPGQNGFVRVMLRGLARARARAGVAAEPPFRLTRYDNGRLTL--TDPATGWSI 118 (135)
T ss_pred ecCCCCeEEEEECCCCCE-EEEecCCCCchhhHhHHHHHHHHHHcCCCCCCCEEEEEEeCCcEEE--EcCCCCcEE
Confidence 456789999999999864 4444332211 11222 24566778889999999999 898876553
No 485
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=34.66 E-value=90 Score=29.61 Aligned_cols=22 Identities=23% Similarity=0.098 Sum_probs=15.8
Q ss_pred eEEEEEccCCCEEEEEeeCCeE
Q 032092 33 MRCVAAFPDQQGFWVGSIEGRV 54 (147)
Q Consensus 33 i~~la~spdg~~l~~g~~dg~i 54 (147)
.++|+++|+|..+++=++..+|
T Consensus 595 ~r~Iavg~~G~lyvaEsD~rri 616 (1899)
T KOG4659|consen 595 QRDIAVGTDGALYVAESDGRRI 616 (1899)
T ss_pred hhceeecCCceEEEEeccchhh
Confidence 4788999988887776655443
No 486
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.18 E-value=86 Score=24.50 Aligned_cols=33 Identities=6% Similarity=-0.073 Sum_probs=0.0
Q ss_pred EEEEecCCCeEEEeCCCCcEEEeecCCceeeec
Q 032092 114 IVLFVQIHHTFATAGSDGAFNFWDKDSKQRLKV 146 (147)
Q Consensus 114 ~~~fspdg~~latg~~Dg~i~iWd~~~~~~~~~ 146 (147)
++.|+|+.+.|.+-.....-.+|=..+|+.+++
T Consensus 90 ~LTynp~~rtLFav~n~p~~iVElt~~Gdlirt 122 (316)
T COG3204 90 SLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRT 122 (316)
T ss_pred ceeeCCCcceEEEecCCCceEEEEecCCceEEE
No 487
>KOG2103 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.69 E-value=2.4e+02 Score=25.31 Aligned_cols=36 Identities=8% Similarity=0.083 Sum_probs=30.7
Q ss_pred ceEEEEEccCCCEEEEEeeCCeEEEEeecCCCCcceeE
Q 032092 32 QMRCVAAFPDQQGFWVGSIEGRVGVHHLDDSQQSKNFT 69 (147)
Q Consensus 32 ~i~~la~spdg~~l~~g~~dg~i~i~~~d~~~~~~~~~ 69 (147)
.+..+.+.+..+++++.+..|-+.- ++.++|....+
T Consensus 37 k~~~~~~~t~~~rlivsT~~~vlAs--L~~~tGei~WR 72 (910)
T KOG2103|consen 37 KVNFLVYDTKSKRLIVSTEKGVLAS--LNLRTGEIIWR 72 (910)
T ss_pred eEEEEeecCCCceEEEEeccchhhe--ecccCCcEEEE
Confidence 4778889998999999999999887 89999887754
No 488
>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=32.43 E-value=42 Score=27.15 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=18.9
Q ss_pred CCCeEEEeCCCCcEEEeecCCc
Q 032092 120 IHHTFATAGSDGAFNFWDKDSK 141 (147)
Q Consensus 120 dg~~latg~~Dg~i~iWd~~~~ 141 (147)
-|-.|+|||.|..+.+||++..
T Consensus 340 ~Gy~lvtgGTDnHlvLvDLr~~ 361 (477)
T KOG2467|consen 340 RGYKLVTGGTDNHLVLVDLRPK 361 (477)
T ss_pred cCceEecCCccceEEEEecccc
Confidence 4667999999999999999753
No 489
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=32.40 E-value=1.1e+02 Score=26.80 Aligned_cols=31 Identities=16% Similarity=0.145 Sum_probs=25.5
Q ss_pred cceEEEEEccC---CCEEEEEeeCCeEEEEeecCCC
Q 032092 31 YQMRCVAAFPD---QQGFWVGSIEGRVGVHHLDDSQ 63 (147)
Q Consensus 31 ~~i~~la~spd---g~~l~~g~~dg~i~i~~~d~~~ 63 (147)
..|..+.|+|. +..|++=+.|+++++ ||...
T Consensus 147 ~~i~qv~WhP~s~~~~~l~vLtsdn~lR~--y~~~~ 180 (717)
T PF10168_consen 147 LEIKQVRWHPWSESDSHLVVLTSDNTLRL--YDISD 180 (717)
T ss_pred ceEEEEEEcCCCCCCCeEEEEecCCEEEE--EecCC
Confidence 35889999996 578999999999999 55543
No 490
>PF07865 DUF1652: Protein of unknown function (DUF1652); InterPro: IPR012448 The proteins in this entry have not been characterised.
Probab=31.93 E-value=68 Score=19.18 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=19.2
Q ss_pred EEecCCCeEEEeCCCC--cEEEeecCCcee
Q 032092 116 LFVQIHHTFATAGSDG--AFNFWDKDSKQR 143 (147)
Q Consensus 116 ~fspdg~~latg~~Dg--~i~iWd~~~~~~ 143 (147)
+|.|. +.-+|-..|+ +|+|+|-.+++.
T Consensus 11 aflPl-~C~ct~~~~~smtvrl~d~~sg~~ 39 (69)
T PF07865_consen 11 AFLPL-RCECTIAPDGSMTVRLFDPASGRV 39 (69)
T ss_pred cCCCc-eeEEEECCCCcEEEEEecCCCCcE
Confidence 77887 3445555555 799999888765
No 491
>PF00843 Arena_nucleocap: Arenavirus nucleocapsid protein; InterPro: IPR000229 Arenaviruses are single stranded RNA viruses. The arenavirus S RNAs that have been characterised include conserved terminal sequences, an ambisense arrangement of the coding regions for the precursor glycoprotein (GPC) and nucleocapsid (N) proteins and an intergenic region capable of forming a base-paired "hairpin" structure. The mature glycoproteins that result are G1 and G2 and the N protein []. This family represents the nucleocapsid protein that encapsulates the viral ssRNA [].; GO: 0019013 viral nucleocapsid; PDB: 3MX5_A 3MX2_C 3MWT_C 3Q7C_A 3MWP_B 3Q7B_A 3T5Q_E 3T5N_A 3R3L_B.
Probab=31.88 E-value=16 Score=29.93 Aligned_cols=18 Identities=28% Similarity=0.665 Sum_probs=10.5
Q ss_pred eCCCCcEEEeecCCceee
Q 032092 127 AGSDGAFNFWDKDSKQRL 144 (147)
Q Consensus 127 g~~Dg~i~iWd~~~~~~~ 144 (147)
++.+|.|+|||+++..++
T Consensus 148 ~~~~GVVrvWDvkd~~lL 165 (533)
T PF00843_consen 148 GGRNGVVRVWDVKDPSLL 165 (533)
T ss_dssp --SSSEE-SEE-S-GGGG
T ss_pred CCCCCeEEEEecCCHHHH
Confidence 457999999999886543
No 492
>PF10411 DsbC_N: Disulfide bond isomerase protein N-terminus; InterPro: IPR018950 This is the N-terminal domain of the disulphide bond isomerase DsbC. The whole molecule is V-shaped, where each arm is a DsbC monomer of two domains linked by a hinge; and the N-termini of each monomer join to form the dimer interface at the base of the V, so are vital for dimerisation []. DsbC is required for disulphide bond formation and functions as a disulphide bond isomerase during oxidative protein-folding in bacterial periplasm. It also has chaperone activity []. ; PDB: 1EEJ_B 2IYJ_A 1TJD_A 1JZD_B 1JZO_A 1G0T_B 1T3B_A.
Probab=31.50 E-value=61 Score=18.26 Aligned_cols=20 Identities=10% Similarity=0.119 Sum_probs=13.0
Q ss_pred EEecCCCeEEEeCCCCcEEEeecCCc
Q 032092 116 LFVQIHHTFATAGSDGAFNFWDKDSK 141 (147)
Q Consensus 116 ~fspdg~~latg~~Dg~i~iWd~~~~ 141 (147)
=.+|||++|..|. ++|++++
T Consensus 37 Y~~~dg~yli~G~------l~d~~~~ 56 (57)
T PF10411_consen 37 YVDEDGRYLIQGQ------LYDLKTK 56 (57)
T ss_dssp EEETTSSEEEES-------EEE-TTT
T ss_pred EEcCCCCEEEEeE------EEecCCC
Confidence 4578999998874 5566554
No 493
>PRK13684 Ycf48-like protein; Provisional
Probab=31.44 E-value=2.5e+02 Score=21.83 Aligned_cols=26 Identities=12% Similarity=0.299 Sum_probs=19.0
Q ss_pred CcceEEEEEccCCCEEEEEeeCCeEEE
Q 032092 30 KYQMRCVAAFPDQQGFWVGSIEGRVGV 56 (147)
Q Consensus 30 ~~~i~~la~spdg~~l~~g~~dg~i~i 56 (147)
...++++++.|+++.+++|. .|.+.+
T Consensus 214 ~~~l~~i~~~~~g~~~~vg~-~G~~~~ 239 (334)
T PRK13684 214 SRRLQSMGFQPDGNLWMLAR-GGQIRF 239 (334)
T ss_pred cccceeeeEcCCCCEEEEec-CCEEEE
Confidence 34688899999988777754 577654
No 494
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=31.14 E-value=3.7e+02 Score=23.71 Aligned_cols=29 Identities=24% Similarity=0.215 Sum_probs=24.2
Q ss_pred cceEEEEEccC-CCEEEEEeeCCeEEEEee
Q 032092 31 YQMRCVAAFPD-QQGFWVGSIEGRVGVHHL 59 (147)
Q Consensus 31 ~~i~~la~spd-g~~l~~g~~dg~i~i~~~ 59 (147)
.+.-.++|+|. .+.||+-+..|...||++
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i 175 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDI 175 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEe
Confidence 45678999995 679999999999999555
No 495
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.00 E-value=49 Score=30.10 Aligned_cols=26 Identities=27% Similarity=0.560 Sum_probs=22.9
Q ss_pred ecCCCeEEEeCCCCcEEEeecCCcee
Q 032092 118 VQIHHTFATAGSDGAFNFWDKDSKQR 143 (147)
Q Consensus 118 spdg~~latg~~Dg~i~iWd~~~~~~ 143 (147)
++++..++++..||.+.+||...++.
T Consensus 243 ~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 243 SRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccCCceEEEEEecCCEEeeecCCCce
Confidence 56689999999999999999988754
No 496
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=30.71 E-value=1.8e+02 Score=26.27 Aligned_cols=51 Identities=18% Similarity=0.152 Sum_probs=32.1
Q ss_pred CeEEEEECCCCccceeEecCCCCcceEEEEEccCCCEEEE-EeeCC-----eEEEEeecCC
Q 032092 8 RNLVVFNLQNPQTEFKRINSPLKYQMRCVAAFPDQQGFWV-GSIEG-----RVGVHHLDDS 62 (147)
Q Consensus 8 g~v~iwdi~~~~~~~~~~~~~~~~~i~~la~spdg~~l~~-g~~dg-----~i~i~~~d~~ 62 (147)
+.+.+-|...... +.++.....+|.+=+|||||+.+|- -+.++ .|.+ -|++
T Consensus 329 ~~L~~~D~dG~n~--~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv--~~L~ 385 (912)
T TIGR02171 329 GNLAYIDYTKGAS--RAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYV--RNLN 385 (912)
T ss_pred CeEEEEecCCCCc--eEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEE--Eehh
Confidence 4777777776542 1232223457888899999999987 44444 3666 4444
No 497
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=30.64 E-value=35 Score=26.06 Aligned_cols=22 Identities=14% Similarity=0.128 Sum_probs=18.1
Q ss_pred EEEecCCCeEEEeCCCCcEEEe
Q 032092 115 VLFVQIHHTFATAGSDGAFNFW 136 (147)
Q Consensus 115 ~~fspdg~~latg~~Dg~i~iW 136 (147)
=-|+++|+++||+..+|-++.-
T Consensus 264 ~i~~~~G~LvAs~~Qegl~r~~ 285 (286)
T PRK10526 264 EFYTQDGVLVASTVQEGVMRNH 285 (286)
T ss_pred EEECCCCCEEEEEEeeEEEEec
Confidence 3788999999999999888753
No 498
>PF13964 Kelch_6: Kelch motif
Probab=30.06 E-value=93 Score=16.43 Aligned_cols=25 Identities=12% Similarity=0.202 Sum_probs=16.6
Q ss_pred cCCCeEEEeCCCC------cEEEeecCCcee
Q 032092 119 QIHHTFATAGSDG------AFNFWDKDSKQR 143 (147)
Q Consensus 119 pdg~~latg~~Dg------~i~iWd~~~~~~ 143 (147)
-++++++.||.+. .+.++|.++++.
T Consensus 10 ~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W 40 (50)
T PF13964_consen 10 VGGKIYVFGGYDNSGKYSNDVERYDPETNTW 40 (50)
T ss_pred ECCEEEEECCCCCCCCccccEEEEcCCCCcE
Confidence 4556666666644 678888877653
No 499
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=29.93 E-value=72 Score=16.42 Aligned_cols=24 Identities=17% Similarity=0.440 Sum_probs=15.8
Q ss_pred CCCeEEEeCCCC------cEEEeecCCcee
Q 032092 120 IHHTFATAGSDG------AFNFWDKDSKQR 143 (147)
Q Consensus 120 dg~~latg~~Dg------~i~iWd~~~~~~ 143 (147)
++++++.||.++ ++..||.++++.
T Consensus 11 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W 40 (47)
T PF01344_consen 11 GNKIYVIGGYDGNNQPTNSVEVYDPETNTW 40 (47)
T ss_dssp TTEEEEEEEBESTSSBEEEEEEEETTTTEE
T ss_pred CCEEEEEeeecccCceeeeEEEEeCCCCEE
Confidence 556666666655 677888777654
No 500
>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which requires a pyruvoyl group for its activity. The pyruvoyl cofactor is covalently bound to the enzyme. The protein is synthesized as a proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an alpha chain (C-terminal fragment) and beta chain (N-terminal fragment), and the pyruvoyl group. Beta-alanine is required for the biosynthesis of pantothenate, in which the enzyme plays a critical regulatory role. The active site of the tetrameric enzyme is located at the interface of two subunits, with a Lysine and a Histidine from the beta chain of one subunit forming the active site with residues from the alpha chain of the adjacent subunit. This alignment
Probab=29.81 E-value=42 Score=22.09 Aligned_cols=17 Identities=6% Similarity=0.173 Sum_probs=14.4
Q ss_pred CcEEEeecCCceeeecC
Q 032092 131 GAFNFWDKDSKQRLKVF 147 (147)
Q Consensus 131 g~i~iWd~~~~~~~~~~ 147 (147)
-.|.|||+.+|.++.||
T Consensus 41 E~V~I~Nv~NG~Rf~TY 57 (111)
T cd06919 41 EKVLVVNVNNGARFETY 57 (111)
T ss_pred CEEEEEECCCCcEEEEE
Confidence 36999999999998876
Done!