Query 032093
Match_columns 147
No_of_seqs 122 out of 1097
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 09:29:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032093.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032093hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 100.0 1.9E-27 4.1E-32 153.2 14.6 134 2-136 17-158 (160)
2 KOG0027 Calmodulin and related 99.9 3.1E-26 6.8E-31 149.2 15.2 132 3-134 6-149 (151)
3 KOG0037 Ca2+-binding protein, 99.9 1.8E-24 3.8E-29 143.8 14.9 141 5-145 57-199 (221)
4 KOG0028 Ca2+-binding protein ( 99.9 2.7E-23 5.9E-28 131.7 14.1 132 3-134 31-170 (172)
5 PTZ00183 centrin; Provisional 99.9 6.1E-23 1.3E-27 134.4 15.4 134 3-136 15-156 (158)
6 PTZ00184 calmodulin; Provision 99.9 1.1E-22 2.5E-27 131.7 15.7 131 3-133 9-147 (149)
7 KOG0031 Myosin regulatory ligh 99.9 3.7E-20 7.9E-25 116.8 14.7 127 3-133 30-164 (171)
8 KOG0030 Myosin essential light 99.9 2.4E-20 5.3E-25 115.7 12.8 131 2-133 8-150 (152)
9 KOG0034 Ca2+/calmodulin-depend 99.8 9.1E-19 2E-23 116.5 13.5 135 3-141 31-182 (187)
10 KOG0036 Predicted mitochondria 99.8 2.5E-17 5.4E-22 118.7 13.8 134 4-137 13-149 (463)
11 KOG0044 Ca2+ sensor (EF-Hand s 99.7 2.4E-16 5.1E-21 105.2 14.5 138 4-141 25-182 (193)
12 KOG0037 Ca2+-binding protein, 99.5 7.8E-14 1.7E-18 93.3 8.9 87 2-88 121-208 (221)
13 PLN02964 phosphatidylserine de 99.5 5.8E-13 1.2E-17 103.0 12.0 108 3-114 141-273 (644)
14 cd05022 S-100A13 S-100A13: S-1 99.5 2.6E-13 5.6E-18 80.3 7.5 72 69-140 6-81 (89)
15 KOG0377 Protein serine/threoni 99.5 3.5E-12 7.5E-17 93.4 13.2 134 4-139 463-620 (631)
16 KOG0038 Ca2+-binding kinase in 99.4 2.9E-12 6.2E-17 80.8 9.9 99 44-142 74-185 (189)
17 cd05027 S-100B S-100B: S-100B 99.4 1.9E-12 4E-17 76.7 8.5 74 68-141 5-86 (88)
18 cd05022 S-100A13 S-100A13: S-1 99.4 1.1E-12 2.3E-17 77.7 7.2 67 4-70 7-76 (89)
19 KOG4223 Reticulocalbin, calume 99.4 7.8E-13 1.7E-17 93.2 7.7 124 8-131 166-302 (325)
20 PF13499 EF-hand_7: EF-hand do 99.4 9.6E-13 2.1E-17 73.9 6.7 61 72-132 1-66 (66)
21 PF13499 EF-hand_7: EF-hand do 99.4 1.7E-12 3.7E-17 72.9 7.2 62 6-67 1-66 (66)
22 cd05029 S-100A6 S-100A6: S-100 99.4 3E-12 6.5E-17 75.8 8.4 74 68-141 7-86 (88)
23 cd05027 S-100B S-100B: S-100B 99.4 9.6E-12 2.1E-16 73.6 8.3 67 4-70 7-80 (88)
24 KOG4223 Reticulocalbin, calume 99.3 8.5E-12 1.8E-16 88.0 9.0 134 3-136 75-230 (325)
25 KOG0027 Calmodulin and related 99.3 3E-11 6.4E-16 78.7 10.3 96 3-98 42-149 (151)
26 COG5126 FRQ1 Ca2+-binding prot 99.3 1.3E-11 2.8E-16 80.0 7.7 95 3-98 54-156 (160)
27 cd05026 S-100Z S-100Z: S-100Z 99.3 2.4E-11 5.2E-16 72.8 8.1 73 68-140 7-87 (93)
28 PF13833 EF-hand_8: EF-hand do 99.3 2.7E-11 5.9E-16 65.3 7.3 52 83-134 1-53 (54)
29 KOG0044 Ca2+ sensor (EF-Hand s 99.3 3.1E-11 6.7E-16 80.8 9.0 95 4-98 63-175 (193)
30 smart00027 EH Eps15 homology d 99.3 3.8E-11 8.3E-16 72.4 8.6 73 3-77 8-80 (96)
31 cd05025 S-100A1 S-100A1: S-100 99.3 4.1E-11 8.9E-16 71.7 8.3 74 69-142 7-88 (92)
32 cd05029 S-100A6 S-100A6: S-100 99.3 6.4E-11 1.4E-15 70.1 8.2 67 4-70 9-80 (88)
33 cd05031 S-100A10_like S-100A10 99.2 1.1E-10 2.5E-15 70.0 8.5 71 69-139 6-84 (94)
34 cd00052 EH Eps15 homology doma 99.2 7.6E-11 1.7E-15 66.1 7.3 61 8-70 2-62 (67)
35 cd05031 S-100A10_like S-100A10 99.2 8.5E-11 1.8E-15 70.6 7.8 67 4-70 7-80 (94)
36 cd05025 S-100A1 S-100A1: S-100 99.2 1.8E-10 3.8E-15 68.9 9.0 68 4-71 8-82 (92)
37 cd05023 S-100A11 S-100A11: S-1 99.2 1.5E-10 3.2E-15 68.7 8.4 74 68-141 6-87 (89)
38 cd05026 S-100Z S-100Z: S-100Z 99.2 1.2E-10 2.6E-15 69.7 8.1 67 4-70 9-82 (93)
39 PTZ00183 centrin; Provisional 99.2 4.7E-10 1E-14 73.2 11.7 95 41-135 17-119 (158)
40 PF13833 EF-hand_8: EF-hand do 99.2 1.3E-10 2.8E-15 62.6 6.8 52 18-69 1-53 (54)
41 cd00052 EH Eps15 homology doma 99.2 1.4E-10 3E-15 65.1 7.0 63 74-138 2-65 (67)
42 smart00027 EH Eps15 homology d 99.2 3.4E-10 7.4E-15 68.2 8.6 70 69-140 8-78 (96)
43 cd00213 S-100 S-100: S-100 dom 99.2 2.9E-10 6.4E-15 67.4 8.2 68 3-70 6-80 (88)
44 PTZ00184 calmodulin; Provision 99.1 1.6E-09 3.5E-14 69.8 11.2 95 41-135 11-113 (149)
45 cd00051 EFh EF-hand, calcium b 99.1 6.5E-10 1.4E-14 60.8 7.4 61 7-67 2-62 (63)
46 KOG0034 Ca2+/calmodulin-depend 99.1 2.1E-09 4.6E-14 71.9 9.9 92 8-99 69-176 (187)
47 cd00213 S-100 S-100: S-100 dom 99.1 1E-09 2.2E-14 65.0 7.4 71 69-139 6-84 (88)
48 cd05030 calgranulins Calgranul 99.1 9.1E-10 2E-14 65.2 7.1 71 69-139 6-84 (88)
49 PF14658 EF-hand_9: EF-hand do 99.1 8.2E-10 1.8E-14 60.9 6.3 60 9-68 2-63 (66)
50 cd05023 S-100A11 S-100A11: S-1 99.1 1.7E-09 3.6E-14 64.2 8.0 67 4-70 8-81 (89)
51 cd00051 EFh EF-hand, calcium b 99.0 1.5E-09 3.3E-14 59.3 6.7 60 73-132 2-62 (63)
52 KOG0040 Ca2+-binding actin-bun 99.0 8.8E-09 1.9E-13 84.8 11.0 123 4-133 2252-2397(2399)
53 KOG0028 Ca2+-binding protein ( 99.0 2E-08 4.4E-13 64.4 10.5 96 41-136 33-136 (172)
54 cd00252 SPARC_EC SPARC_EC; ext 99.0 5.1E-09 1.1E-13 65.0 7.5 60 4-67 47-106 (116)
55 cd05024 S-100A10 S-100A10: A s 98.9 9.8E-09 2.1E-13 60.5 8.0 74 69-142 6-84 (91)
56 PF14658 EF-hand_9: EF-hand do 98.9 7.9E-09 1.7E-13 57.1 6.8 60 75-134 2-64 (66)
57 KOG2643 Ca2+ binding protein, 98.9 7.1E-09 1.5E-13 76.1 8.2 126 8-134 321-453 (489)
58 KOG2643 Ca2+ binding protein, 98.9 2.3E-08 5E-13 73.4 10.5 135 4-139 232-389 (489)
59 PLN02964 phosphatidylserine de 98.9 1.6E-08 3.6E-13 78.7 10.0 115 20-135 119-244 (644)
60 cd00252 SPARC_EC SPARC_EC; ext 98.9 7.5E-09 1.6E-13 64.2 6.3 64 68-135 45-109 (116)
61 cd05030 calgranulins Calgranul 98.9 1.5E-08 3.2E-13 60.1 7.2 67 4-70 7-80 (88)
62 KOG2562 Protein phosphatase 2 98.7 2.4E-07 5.3E-12 68.6 11.2 117 11-130 284-420 (493)
63 KOG0041 Predicted Ca2+-binding 98.7 9.7E-08 2.1E-12 63.6 7.9 78 60-137 87-166 (244)
64 KOG0031 Myosin regulatory ligh 98.7 1.4E-07 3E-12 60.3 7.5 67 3-69 99-165 (171)
65 KOG0036 Predicted mitochondria 98.7 5.1E-07 1.1E-11 66.2 11.1 119 5-133 51-182 (463)
66 PF00036 EF-hand_1: EF hand; 98.6 7.4E-08 1.6E-12 44.8 3.5 28 6-33 1-28 (29)
67 cd05024 S-100A10 S-100A10: A s 98.6 6E-07 1.3E-11 53.0 8.1 66 4-70 7-77 (91)
68 KOG0041 Predicted Ca2+-binding 98.6 2.2E-07 4.8E-12 61.9 6.9 67 3-69 97-163 (244)
69 KOG0030 Myosin essential light 98.6 2.3E-07 5E-12 58.3 6.0 62 5-67 88-149 (152)
70 KOG4251 Calcium binding protei 98.5 3.9E-07 8.4E-12 62.7 7.1 60 6-65 102-164 (362)
71 PF13405 EF-hand_6: EF-hand do 98.5 2.2E-07 4.8E-12 44.0 3.5 30 6-35 1-31 (31)
72 KOG0751 Mitochondrial aspartat 98.5 1.1E-06 2.4E-11 65.9 8.4 130 6-138 109-248 (694)
73 KOG0169 Phosphoinositide-speci 98.5 3.3E-06 7.1E-11 66.2 10.7 130 5-134 136-274 (746)
74 PF14788 EF-hand_10: EF hand; 98.4 1.4E-06 3E-11 45.6 6.0 50 21-70 1-50 (51)
75 PF12763 EF-hand_4: Cytoskelet 98.4 3.5E-06 7.6E-11 51.3 8.7 67 3-72 8-74 (104)
76 PF00036 EF-hand_1: EF hand; 98.4 3.3E-07 7.1E-12 42.6 3.1 22 75-96 4-26 (29)
77 PF12763 EF-hand_4: Cytoskelet 98.4 3E-06 6.6E-11 51.5 7.9 67 70-138 9-75 (104)
78 KOG0377 Protein serine/threoni 98.4 9.7E-07 2.1E-11 65.4 6.5 67 2-68 544-614 (631)
79 PF13405 EF-hand_6: EF-hand do 98.4 6.6E-07 1.4E-11 42.3 3.2 29 72-100 1-31 (31)
80 KOG1029 Endocytic adaptor prot 98.2 4.2E-05 9E-10 60.4 11.9 125 9-138 20-261 (1118)
81 KOG4666 Predicted phosphate ac 98.2 1.1E-06 2.4E-11 62.7 2.2 102 41-144 259-369 (412)
82 PF13202 EF-hand_5: EF hand; P 98.2 3.6E-06 7.8E-11 37.7 3.2 25 7-31 1-25 (25)
83 PF14788 EF-hand_10: EF hand; 98.1 2.9E-05 6.3E-10 40.6 6.1 50 86-135 1-50 (51)
84 KOG0751 Mitochondrial aspartat 98.0 0.00014 3.1E-09 55.0 11.2 98 3-100 31-138 (694)
85 PRK12309 transaldolase/EF-hand 98.0 2.1E-05 4.6E-10 58.6 6.8 57 35-98 328-385 (391)
86 KOG0038 Ca2+-binding kinase in 98.0 4.4E-05 9.4E-10 48.7 6.6 90 9-98 75-177 (189)
87 PF13202 EF-hand_5: EF hand; P 97.9 1.1E-05 2.5E-10 36.0 2.5 20 75-94 3-23 (25)
88 KOG2562 Protein phosphatase 2 97.9 0.00019 4.2E-09 53.7 10.2 57 77-136 284-345 (493)
89 PRK12309 transaldolase/EF-hand 97.9 6.5E-05 1.4E-09 56.0 6.8 97 21-135 281-386 (391)
90 PF10591 SPARC_Ca_bdg: Secrete 97.8 1.5E-05 3.3E-10 49.3 2.4 59 5-65 54-112 (113)
91 KOG0046 Ca2+-binding actin-bun 97.7 0.00021 4.6E-09 54.3 7.5 68 70-137 18-88 (627)
92 KOG0040 Ca2+-binding actin-bun 97.7 0.00014 3E-09 61.2 6.5 66 71-136 2253-2326(2399)
93 KOG0046 Ca2+-binding actin-bun 97.6 0.00021 4.6E-09 54.3 6.7 65 3-68 17-84 (627)
94 KOG1707 Predicted Ras related/ 97.5 0.0012 2.5E-08 51.2 8.9 128 3-134 193-377 (625)
95 PF09279 EF-hand_like: Phospho 97.4 0.00038 8.2E-09 40.5 4.8 62 73-134 2-69 (83)
96 KOG4065 Uncharacterized conser 97.4 0.00039 8.5E-09 42.6 4.7 63 69-131 65-142 (144)
97 smart00054 EFh EF-hand, calciu 97.3 0.00033 7.2E-09 31.3 3.0 27 7-33 2-28 (29)
98 PF10591 SPARC_Ca_bdg: Secrete 97.3 9.2E-05 2E-09 45.8 0.9 60 70-131 53-113 (113)
99 PF09279 EF-hand_like: Phospho 97.2 0.0015 3.3E-08 37.9 5.7 61 6-67 1-67 (83)
100 PF05042 Caleosin: Caleosin re 97.1 0.01 2.2E-07 39.2 8.6 128 4-132 6-164 (174)
101 KOG4666 Predicted phosphate ac 97.0 0.0045 9.8E-08 44.8 6.9 96 5-100 259-361 (412)
102 KOG4065 Uncharacterized conser 96.9 0.0081 1.8E-07 36.9 6.8 63 3-65 65-141 (144)
103 KOG4251 Calcium binding protei 96.8 0.011 2.3E-07 41.3 7.4 59 40-98 100-168 (362)
104 smart00054 EFh EF-hand, calciu 96.7 0.0025 5.5E-08 28.2 2.9 23 110-132 4-26 (29)
105 PF05517 p25-alpha: p25-alpha 96.7 0.016 3.4E-07 37.9 7.4 67 74-140 2-75 (154)
106 PLN02952 phosphoinositide phos 96.3 0.034 7.3E-07 43.9 8.3 81 54-134 13-110 (599)
107 KOG1029 Endocytic adaptor prot 96.0 0.019 4.2E-07 46.1 5.6 65 3-69 193-257 (1118)
108 KOG0035 Ca2+-binding actin-bun 96.0 0.09 2E-06 43.2 9.3 91 4-94 746-848 (890)
109 PF05042 Caleosin: Caleosin re 95.8 0.07 1.5E-06 35.3 6.8 37 103-139 93-129 (174)
110 KOG1955 Ral-GTPase effector RA 95.7 0.034 7.3E-07 42.6 5.6 63 4-68 230-292 (737)
111 KOG1265 Phospholipase C [Lipid 95.3 0.51 1.1E-05 39.0 10.9 116 16-134 159-299 (1189)
112 PF05517 p25-alpha: p25-alpha 95.1 0.27 5.8E-06 32.1 7.9 63 8-70 2-70 (154)
113 KOG2243 Ca2+ release channel ( 95.0 0.053 1.1E-06 46.6 5.1 58 9-67 4061-4118(5019)
114 KOG1955 Ral-GTPase effector RA 94.9 0.077 1.7E-06 40.8 5.3 67 71-139 231-298 (737)
115 PF09069 EF-hand_3: EF-hand; 94.6 0.34 7.4E-06 28.7 6.5 65 71-137 3-78 (90)
116 KOG2243 Ca2+ release channel ( 94.5 0.074 1.6E-06 45.8 4.7 57 75-132 4061-4118(5019)
117 KOG0169 Phosphoinositide-speci 94.4 0.63 1.4E-05 37.6 9.5 95 38-136 133-234 (746)
118 KOG0042 Glycerol-3-phosphate d 94.4 0.11 2.4E-06 40.6 5.3 65 6-70 594-658 (680)
119 KOG0998 Synaptic vesicle prote 94.2 0.11 2.5E-06 42.9 5.3 131 5-139 11-195 (847)
120 KOG0042 Glycerol-3-phosphate d 94.2 0.11 2.3E-06 40.7 4.7 67 71-137 593-660 (680)
121 KOG3866 DNA-binding protein of 93.8 0.35 7.6E-06 35.1 6.5 27 108-134 298-324 (442)
122 PF08726 EFhand_Ca_insen: Ca2+ 93.7 0.039 8.4E-07 31.0 1.2 53 71-130 6-65 (69)
123 KOG0998 Synaptic vesicle prote 93.3 0.12 2.5E-06 42.8 3.8 64 72-137 284-348 (847)
124 PF08976 DUF1880: Domain of un 93.1 0.082 1.8E-06 32.6 2.1 33 103-135 4-36 (118)
125 KOG4578 Uncharacterized conser 92.6 0.19 4.1E-06 36.7 3.7 63 72-136 334-400 (421)
126 KOG4347 GTPase-activating prot 92.6 0.29 6.2E-06 38.9 4.9 70 22-92 535-612 (671)
127 KOG3555 Ca2+-binding proteogly 92.4 0.3 6.5E-06 35.9 4.5 96 5-100 211-312 (434)
128 KOG4578 Uncharacterized conser 92.4 0.11 2.3E-06 38.0 2.2 57 42-98 334-398 (421)
129 KOG3555 Ca2+-binding proteogly 92.3 0.34 7.3E-06 35.7 4.7 62 71-136 250-312 (434)
130 KOG4347 GTPase-activating prot 88.8 0.51 1.1E-05 37.5 3.2 56 7-63 557-612 (671)
131 PF08414 NADPH_Ox: Respiratory 87.8 2.5 5.4E-05 25.4 5.0 14 85-98 79-92 (100)
132 PF09069 EF-hand_3: EF-hand; 87.6 4.2 9E-05 24.1 7.5 61 5-68 3-74 (90)
133 KOG2871 Uncharacterized conser 87.5 0.57 1.2E-05 34.9 2.7 63 3-65 307-370 (449)
134 PF08976 DUF1880: Domain of un 86.6 0.84 1.8E-05 28.2 2.6 33 38-70 4-36 (118)
135 PLN02222 phosphoinositide phos 85.4 3.1 6.7E-05 33.2 5.8 62 72-134 26-90 (581)
136 PF02761 Cbl_N2: CBL proto-onc 83.9 3.4 7.5E-05 24.1 4.2 50 20-69 21-70 (85)
137 PLN02230 phosphoinositide phos 83.6 5.4 0.00012 32.0 6.5 64 71-134 29-102 (598)
138 PLN02228 Phosphoinositide phos 83.6 5.2 0.00011 31.9 6.3 49 86-134 38-92 (567)
139 KOG1707 Predicted Ras related/ 83.6 1.6 3.6E-05 34.5 3.6 59 6-70 316-378 (625)
140 PHA02105 hypothetical protein 82.3 2.6 5.7E-05 22.5 3.0 54 86-139 4-62 (68)
141 PF12174 RST: RCD1-SRO-TAF4 (R 82.3 1.6 3.4E-05 24.6 2.3 27 72-98 26-53 (70)
142 PF01023 S_100: S-100/ICaBP ty 81.8 4 8.6E-05 20.6 3.5 29 70-98 5-36 (44)
143 KOG0035 Ca2+-binding actin-bun 81.4 4.8 0.0001 33.7 5.5 69 71-139 747-821 (890)
144 PLN02228 Phosphoinositide phos 81.2 10 0.00022 30.3 7.1 63 3-67 22-90 (567)
145 PLN02223 phosphoinositide phos 80.8 5.9 0.00013 31.3 5.7 64 71-134 16-92 (537)
146 PLN02222 phosphoinositide phos 80.4 9.1 0.0002 30.7 6.7 62 4-67 24-88 (581)
147 KOG1264 Phospholipase C [Lipid 80.1 18 0.00039 30.4 8.2 125 9-134 148-293 (1267)
148 PF07308 DUF1456: Protein of u 79.8 8.5 0.00018 21.5 5.5 49 87-135 14-62 (68)
149 PF11116 DUF2624: Protein of u 79.3 10 0.00022 22.2 6.3 52 85-136 13-64 (85)
150 PLN02230 phosphoinositide phos 78.7 13 0.00029 29.9 7.1 64 3-67 27-100 (598)
151 PF08726 EFhand_Ca_insen: Ca2+ 77.9 3.6 7.7E-05 23.1 2.8 54 4-65 5-65 (69)
152 KOG2871 Uncharacterized conser 77.1 4.2 9.2E-05 30.5 3.7 37 71-107 309-346 (449)
153 cd08315 Death_TRAILR_DR4_DR5 D 77.0 13 0.00029 22.2 8.4 89 3-113 2-91 (96)
154 KOG3449 60S acidic ribosomal p 76.9 7.7 0.00017 23.8 4.2 44 73-116 3-47 (112)
155 KOG1785 Tyrosine kinase negati 75.7 33 0.00071 26.3 8.0 81 19-99 188-275 (563)
156 PF11116 DUF2624: Protein of u 74.9 14 0.00031 21.6 6.9 52 19-70 12-63 (85)
157 PF14513 DAG_kinase_N: Diacylg 74.2 19 0.00042 23.1 5.8 61 19-81 5-79 (138)
158 PTZ00373 60S Acidic ribosomal 73.9 18 0.0004 22.3 5.7 40 77-116 9-49 (112)
159 KOG1265 Phospholipase C [Lipid 72.9 35 0.00075 29.1 8.0 72 24-98 207-299 (1189)
160 PLN02952 phosphoinositide phos 71.8 17 0.00036 29.4 6.1 55 83-138 13-69 (599)
161 PRK00523 hypothetical protein; 71.8 11 0.00023 21.3 3.7 41 75-115 28-68 (72)
162 PF03672 UPF0154: Uncharacteri 71.8 11 0.00024 20.8 3.7 33 83-115 28-60 (64)
163 cd07894 Adenylation_RNA_ligase 71.0 11 0.00024 28.1 4.7 90 15-104 135-244 (342)
164 PRK09430 djlA Dna-J like membr 70.8 36 0.00079 24.4 9.2 94 18-114 68-174 (267)
165 TIGR01209 RNA ligase, Pab1020 70.7 12 0.00027 28.2 4.9 97 11-107 163-280 (374)
166 KOG3449 60S acidic ribosomal p 70.5 22 0.00048 21.8 6.0 54 7-65 3-56 (112)
167 KOG0039 Ferric reductase, NADH 69.9 7.5 0.00016 31.6 3.9 66 71-136 18-91 (646)
168 PLN02223 phosphoinositide phos 69.5 26 0.00057 27.9 6.6 65 3-68 14-91 (537)
169 PF12174 RST: RCD1-SRO-TAF4 (R 68.4 5.6 0.00012 22.3 2.2 49 19-70 6-54 (70)
170 COG3763 Uncharacterized protei 68.2 15 0.00033 20.6 3.7 34 82-115 34-67 (71)
171 cd07313 terB_like_2 tellurium 67.5 23 0.00051 20.9 5.8 73 19-92 13-94 (104)
172 cd07313 terB_like_2 tellurium 66.9 11 0.00024 22.4 3.5 50 84-133 13-64 (104)
173 KOG3866 DNA-binding protein of 66.8 10 0.00022 27.9 3.6 59 9-67 248-322 (442)
174 PRK01844 hypothetical protein; 65.9 16 0.00034 20.6 3.6 41 75-115 27-67 (72)
175 TIGR03573 WbuX N-acetyl sugar 65.5 17 0.00037 27.1 4.8 44 83-132 299-342 (343)
176 PF07308 DUF1456: Protein of u 64.8 22 0.00049 19.8 5.9 47 22-68 14-60 (68)
177 cd05833 Ribosomal_P2 Ribosomal 64.8 25 0.00053 21.6 4.6 50 77-131 7-57 (109)
178 TIGR01639 P_fal_TIGR01639 Plas 64.7 21 0.00045 19.3 4.9 48 84-136 7-54 (61)
179 PF00404 Dockerin_1: Dockerin 63.8 10 0.00022 15.9 2.0 14 15-28 1-14 (21)
180 PF11848 DUF3368: Domain of un 62.8 19 0.00042 18.3 3.4 33 83-115 14-47 (48)
181 PTZ00373 60S Acidic ribosomal 62.7 34 0.00074 21.2 5.3 52 9-65 7-58 (112)
182 PF07879 PHB_acc_N: PHB/PHA ac 62.1 23 0.00051 19.5 3.7 38 78-115 10-58 (64)
183 PF08461 HTH_12: Ribonuclease 61.4 16 0.00035 20.1 3.1 37 18-54 10-46 (66)
184 KOG2301 Voltage-gated Ca2+ cha 61.4 7.2 0.00016 35.0 2.5 65 3-68 1415-1483(1592)
185 PF09336 Vps4_C: Vps4 C termin 61.3 14 0.00031 20.1 2.9 27 86-112 29-55 (62)
186 COG4103 Uncharacterized protei 60.8 43 0.00093 21.7 6.5 88 9-98 34-129 (148)
187 PF09068 EF-hand_2: EF hand; 60.3 41 0.00088 21.2 7.1 22 76-97 102-124 (127)
188 TIGR01848 PHA_reg_PhaR polyhyd 58.7 40 0.00087 20.6 5.3 70 49-122 11-85 (107)
189 KOG4004 Matricellular protein 57.9 4.5 9.6E-05 27.7 0.6 58 77-136 193-252 (259)
190 KOG1954 Endocytosis/signaling 57.5 24 0.00052 27.0 4.3 61 72-134 445-505 (532)
191 COG2818 Tag 3-methyladenine DN 57.4 8.9 0.00019 25.9 1.9 47 2-48 52-98 (188)
192 PLN00138 large subunit ribosom 56.7 40 0.00086 20.9 4.6 35 82-116 13-47 (113)
193 COG5069 SAC6 Ca2+-binding acti 56.6 20 0.00042 28.2 3.8 76 5-81 485-564 (612)
194 cd04411 Ribosomal_P1_P2_L12p R 56.2 44 0.00096 20.4 5.3 41 87-132 17-57 (105)
195 KOG4403 Cell surface glycoprot 56.0 67 0.0015 25.0 6.4 80 17-99 40-130 (575)
196 PF13623 SurA_N_2: SurA N-term 55.5 54 0.0012 21.2 6.5 39 93-131 96-144 (145)
197 KOG4004 Matricellular protein 54.8 7.2 0.00016 26.7 1.2 22 44-65 225-246 (259)
198 cd05833 Ribosomal_P2 Ribosomal 54.1 50 0.0011 20.3 5.2 52 9-65 5-56 (109)
199 PF07128 DUF1380: Protein of u 52.0 27 0.00059 22.5 3.4 31 87-117 27-57 (139)
200 cd07311 terB_like_1 tellurium 51.6 65 0.0014 21.0 8.1 91 18-114 36-133 (150)
201 PF03979 Sigma70_r1_1: Sigma-7 51.6 26 0.00056 20.1 3.0 45 5-53 7-51 (82)
202 KOG0506 Glutaminase (contains 51.6 81 0.0018 25.0 6.3 58 10-67 91-156 (622)
203 PRK00819 RNA 2'-phosphotransfe 51.4 40 0.00087 22.7 4.3 35 16-50 28-62 (179)
204 PF01885 PTS_2-RNA: RNA 2'-pho 50.3 34 0.00074 23.1 3.9 37 15-51 26-62 (186)
205 COG4103 Uncharacterized protei 49.9 34 0.00074 22.1 3.6 32 102-133 62-93 (148)
206 KOG4286 Dystrophin-like protei 48.4 1.5E+02 0.0033 25.0 7.6 27 108-136 556-582 (966)
207 PRK06402 rpl12p 50S ribosomal 48.1 63 0.0014 19.8 5.1 43 81-129 12-54 (106)
208 cd08316 Death_FAS_TNFRSF6 Deat 47.5 61 0.0013 19.4 7.2 78 20-113 16-93 (97)
209 KOG0506 Glutaminase (contains 47.0 53 0.0012 25.9 4.8 63 71-133 86-157 (622)
210 KOG1954 Endocytosis/signaling 46.8 52 0.0011 25.3 4.6 56 7-65 446-501 (532)
211 PF12419 DUF3670: SNF2 Helicas 45.5 50 0.0011 21.1 4.0 50 83-132 80-139 (141)
212 PF01885 PTS_2-RNA: RNA 2'-pho 43.0 67 0.0015 21.7 4.4 34 82-115 28-61 (186)
213 PRK14981 DNA-directed RNA poly 42.5 56 0.0012 20.1 3.7 27 88-114 80-106 (112)
214 PF05099 TerB: Tellurite resis 42.1 13 0.00028 23.3 0.9 15 54-68 36-50 (140)
215 COG1460 Uncharacterized protei 41.9 62 0.0013 20.1 3.7 29 87-115 80-108 (114)
216 PF12486 DUF3702: ImpA domain 41.5 27 0.00059 22.8 2.2 27 6-32 70-96 (148)
217 KOG2301 Voltage-gated Ca2+ cha 41.2 18 0.00039 32.7 1.8 65 70-135 1416-1485(1592)
218 PF05819 NolX: NolX protein; 41.0 1.9E+02 0.004 23.2 9.3 99 9-109 303-452 (624)
219 PF06384 ICAT: Beta-catenin-in 41.0 49 0.0011 19.0 3.0 33 83-115 6-45 (78)
220 PF07499 RuvA_C: RuvA, C-termi 40.1 53 0.0011 16.6 3.9 41 89-133 3-43 (47)
221 cd07176 terB tellurite resista 40.1 58 0.0013 19.2 3.6 16 19-34 16-31 (111)
222 TIGR03573 WbuX N-acetyl sugar 39.9 87 0.0019 23.3 5.0 12 56-67 301-312 (343)
223 PLN00138 large subunit ribosom 39.5 93 0.002 19.3 5.2 41 11-51 7-47 (113)
224 PF02337 Gag_p10: Retroviral G 39.3 59 0.0013 19.3 3.3 48 90-137 12-64 (90)
225 PF08100 Dimerisation: Dimeris 39.3 17 0.00037 18.9 0.9 39 10-49 11-49 (51)
226 PF07862 Nif11: Nitrogen fixat 39.1 52 0.0011 16.6 2.8 21 88-108 28-48 (49)
227 TIGR00624 tag DNA-3-methyladen 38.0 28 0.0006 23.5 2.0 46 3-48 51-96 (179)
228 TIGR02675 tape_meas_nterm tape 37.5 62 0.0013 18.2 3.1 14 84-97 28-41 (75)
229 PRK00819 RNA 2'-phosphotransfe 37.3 1.2E+02 0.0026 20.5 4.9 14 53-66 29-42 (179)
230 PF02037 SAP: SAP domain; Int 36.8 45 0.00098 15.6 2.1 18 21-38 3-20 (35)
231 PF09373 PMBR: Pseudomurein-bi 36.4 51 0.0011 15.3 2.4 18 121-138 3-20 (33)
232 PF04558 tRNA_synt_1c_R1: Glut 34.3 29 0.00062 23.0 1.6 44 71-115 85-129 (164)
233 COG2058 RPP1A Ribosomal protei 34.3 1.1E+02 0.0025 18.8 4.8 42 85-131 15-56 (109)
234 PHA01351 putative minor struct 34.1 2.6E+02 0.0057 23.6 6.9 48 65-114 521-570 (1070)
235 TIGR00135 gatC glutamyl-tRNA(G 33.9 88 0.0019 18.3 3.5 30 22-51 1-30 (93)
236 TIGR01848 PHA_reg_PhaR polyhyd 33.9 1.2E+02 0.0025 18.7 5.5 47 13-59 11-67 (107)
237 PF09107 SelB-wing_3: Elongati 33.5 75 0.0016 16.4 3.2 29 19-52 8-36 (50)
238 KOG4403 Cell surface glycoprot 33.4 1.6E+02 0.0034 23.1 5.4 61 5-68 68-128 (575)
239 PF10437 Lip_prot_lig_C: Bacte 33.3 97 0.0021 17.7 4.6 44 22-67 42-86 (86)
240 PF00690 Cation_ATPase_N: Cati 33.3 77 0.0017 17.2 3.1 34 87-120 4-38 (69)
241 TIGR03685 L21P_arch 50S riboso 33.1 1.2E+02 0.0025 18.5 4.3 47 81-133 12-58 (105)
242 PF04157 EAP30: EAP30/Vps36 fa 32.4 1.7E+02 0.0037 20.2 8.0 38 83-120 110-150 (223)
243 PF09808 SNAPc_SNAP43: Small n 32.3 1.2E+02 0.0027 20.4 4.5 29 41-71 4-32 (194)
244 PRK10353 3-methyl-adenine DNA 31.3 30 0.00065 23.5 1.3 46 3-48 52-97 (187)
245 KOG4301 Beta-dystrobrevin [Cyt 30.9 2.4E+02 0.0052 21.4 7.9 83 17-99 71-174 (434)
246 KOG0039 Ferric reductase, NADH 30.7 2E+02 0.0043 23.7 6.0 73 19-98 2-89 (646)
247 PF07553 Lipoprotein_Ltp: Host 29.8 88 0.0019 16.1 3.2 31 84-114 16-47 (48)
248 cd05831 Ribosomal_P1 Ribosomal 29.8 1.3E+02 0.0029 18.2 5.1 43 83-130 14-56 (103)
249 PRK15121 right oriC-binding tr 29.4 2.2E+02 0.0047 20.4 9.0 98 1-110 1-105 (289)
250 PF04876 Tenui_NCP: Tenuivirus 29.4 1.7E+02 0.0037 19.2 7.5 15 54-68 96-110 (175)
251 PF09682 Holin_LLH: Phage holi 29.0 1.4E+02 0.003 18.1 3.9 33 83-115 64-100 (108)
252 KOG3077 Uncharacterized conser 29.0 2.3E+02 0.0049 20.5 10.9 65 4-68 63-128 (260)
253 PF01498 HTH_Tnp_Tc3_2: Transp 28.7 87 0.0019 17.0 2.8 33 19-51 11-43 (72)
254 KOG4301 Beta-dystrobrevin [Cyt 28.4 1.3E+02 0.0027 22.8 4.1 59 10-69 115-173 (434)
255 PRK00034 gatC aspartyl/glutamy 28.0 1.3E+02 0.0028 17.5 3.6 30 21-50 2-31 (95)
256 PF08812 YtxC: YtxC-like famil 27.8 94 0.002 21.7 3.3 42 75-116 147-191 (221)
257 cd03035 ArsC_Yffb Arsenate Red 27.4 60 0.0013 19.6 2.1 61 76-139 25-88 (105)
258 PF06648 DUF1160: Protein of u 27.0 1.7E+02 0.0037 18.5 4.3 30 21-50 50-80 (122)
259 PF08044 DUF1707: Domain of un 26.8 1.1E+02 0.0023 16.1 2.7 30 83-112 20-49 (53)
260 PF02375 JmjN: jmjN domain; I 26.6 58 0.0013 15.4 1.5 17 124-140 6-22 (34)
261 PF08672 APC2: Anaphase promot 26.6 1.2E+02 0.0025 16.4 3.1 13 86-98 11-23 (60)
262 KOG3077 Uncharacterized conser 26.5 2.5E+02 0.0055 20.3 5.7 65 71-135 64-130 (260)
263 cd05832 Ribosomal_L12p Ribosom 26.3 1.6E+02 0.0035 18.0 4.3 46 81-132 12-57 (106)
264 PF08640 U3_assoc_6: U3 small 26.2 1.4E+02 0.0031 17.3 4.0 48 83-136 13-60 (83)
265 PF12207 DUF3600: Domain of un 26.2 66 0.0014 21.0 2.1 10 87-96 106-115 (162)
266 TIGR03798 ocin_TIGR03798 bacte 25.9 1.2E+02 0.0026 16.3 5.7 46 60-111 4-49 (64)
267 PF03352 Adenine_glyco: Methyl 25.7 26 0.00057 23.6 0.3 46 3-48 47-92 (179)
268 cd07316 terB_like_DjlA N-termi 25.5 1.5E+02 0.0032 17.3 7.3 48 19-68 13-63 (106)
269 PHA01351 putative minor struct 25.5 3.6E+02 0.0077 22.9 6.3 77 18-115 589-667 (1070)
270 smart00513 SAP Putative DNA-bi 25.3 87 0.0019 14.5 3.6 18 21-38 3-20 (35)
271 cd08327 CARD_RAIDD Caspase act 25.3 1.6E+02 0.0034 17.5 5.1 51 83-138 32-82 (94)
272 COG1423 ATP-dependent DNA liga 25.2 2E+02 0.0043 21.9 4.6 85 14-98 174-279 (382)
273 cd08324 CARD_NOD1_CARD4 Caspas 24.7 1.6E+02 0.0034 17.3 5.6 50 83-137 26-75 (85)
274 KOG2525 Folylpolyglutamate syn 24.5 93 0.002 24.6 3.0 27 107-134 108-134 (496)
275 cd04411 Ribosomal_P1_P2_L12p R 24.4 1.8E+02 0.0038 17.8 6.0 39 22-65 17-55 (105)
276 PF06207 DUF1002: Protein of u 24.3 1.5E+02 0.0033 20.8 3.8 47 88-134 173-223 (225)
277 PRK09462 fur ferric uptake reg 23.9 2E+02 0.0044 18.3 4.6 12 21-32 33-44 (148)
278 cd08313 Death_TNFR1 Death doma 23.8 1.6E+02 0.0034 17.0 5.2 65 21-103 8-74 (80)
279 KOG4070 Putative signal transd 23.5 1.2E+02 0.0026 20.0 2.9 41 11-51 63-108 (180)
280 PF02885 Glycos_trans_3N: Glyc 23.3 1.4E+02 0.003 16.1 4.0 12 103-114 15-26 (66)
281 PHA02335 hypothetical protein 23.1 1.9E+02 0.0042 17.8 5.8 47 54-100 21-70 (118)
282 PF12631 GTPase_Cys_C: Catalyt 22.9 1.1E+02 0.0024 17.0 2.5 26 24-49 42-71 (73)
283 PF10982 DUF2789: Protein of u 22.2 1.3E+02 0.0029 17.1 2.6 34 90-123 6-39 (74)
284 PRK05988 formate dehydrogenase 22.2 2.4E+02 0.0052 18.5 6.9 57 41-115 9-65 (156)
285 TIGR01321 TrpR trp operon repr 21.9 1.8E+02 0.0039 17.4 3.3 11 104-114 34-44 (94)
286 PF13331 DUF4093: Domain of un 21.7 1.6E+02 0.0034 17.3 3.0 28 83-112 59-86 (87)
287 PRK00441 argR arginine repress 21.6 2.2E+02 0.0047 18.5 3.9 33 19-51 16-48 (149)
288 PF09454 Vps23_core: Vps23 cor 21.2 1.3E+02 0.0028 16.5 2.4 7 123-129 40-46 (65)
289 PF15144 DUF4576: Domain of un 21.2 38 0.00083 19.4 0.3 32 19-50 38-69 (88)
290 TIGR02878 spore_ypjB sporulati 21.1 3.1E+02 0.0068 19.4 5.2 44 71-119 151-195 (233)
291 PRK10945 gene expression modul 20.8 1.8E+02 0.0039 16.5 3.3 16 84-99 32-47 (72)
292 PF14848 HU-DNA_bdg: DNA-bindi 20.4 2.3E+02 0.005 17.6 3.9 33 83-115 25-57 (124)
293 PF01257 2Fe-2S_thioredx: Thio 20.4 2.5E+02 0.0054 18.0 5.6 31 84-116 26-56 (145)
294 PF04719 TAFII28: hTAFII28-lik 20.3 2E+02 0.0044 17.0 5.8 59 38-98 24-89 (90)
295 PF08671 SinI: Anti-repressor 20.3 98 0.0021 14.2 1.5 11 87-97 17-27 (30)
296 COG3448 CBS-domain-containing 20.3 2.3E+02 0.005 21.2 4.1 43 103-147 203-247 (382)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.96 E-value=1.9e-27 Score=153.22 Aligned_cols=134 Identities=19% Similarity=0.314 Sum_probs=126.7
Q ss_pred ccHHHHHHHHhhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH-------HHHHH
Q 032093 2 ENTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF-------LLKVQ 74 (147)
Q Consensus 2 ~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~-------~~~~~ 74 (147)
++.++++++|..+|++++|.|+..+|..+++.+|..++..++..++..++. +++.|+|.+|+.++.. .++++
T Consensus 17 ~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~ 95 (160)
T COG5126 17 EQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELR 95 (160)
T ss_pred HHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHH
Confidence 456789999999999999999999999999999999999999999999998 9999999999999865 47999
Q ss_pred HHccccc-CCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhh
Q 032093 75 HAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQ 136 (147)
Q Consensus 75 ~~f~~~D-~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l~~~~ 136 (147)
.+|+.|| +++|+|+..+++.++..+|..+++++++.++..++.+++|.|+|++|.+.+..-+
T Consensus 96 ~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~~~ 158 (160)
T COG5126 96 EAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKDSP 158 (160)
T ss_pred HHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhccC
Confidence 9999999 7999999999999999999999999999999999999999999999999887544
No 2
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.95 E-value=3.1e-26 Score=149.23 Aligned_cols=132 Identities=21% Similarity=0.417 Sum_probs=125.2
Q ss_pred cHHHHHHHHhhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH-----------H
Q 032093 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL-----------L 71 (147)
Q Consensus 3 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~-----------~ 71 (147)
...+++.+|..+|.+++|.|+..+|..+++.+|..++..++..++..+|.+++|.|++.+|+.++... +
T Consensus 6 ~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~ 85 (151)
T KOG0027|consen 6 QILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSE 85 (151)
T ss_pred HHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHH
Confidence 45689999999999999999999999999999999999999999999999999999999999988643 3
Q ss_pred HHHHHccccc-CCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 032093 72 KVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIF 134 (147)
Q Consensus 72 ~~~~~f~~~D-~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l~~ 134 (147)
.++.+|+.+| +++|+|+.++|+.+|..+|.+.+.++++.++...+.|++|.|+|.+|++++..
T Consensus 86 el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 86 ELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred HHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 8999999999 79999999999999999999999999999999999999999999999998864
No 3
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.93 E-value=1.8e-24 Score=143.76 Aligned_cols=141 Identities=29% Similarity=0.574 Sum_probs=132.5
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHcCCC-CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHHccccc-C
Q 032093 5 AVLREWFDRVDSEKTGSIAAAQLKHAFAVGNL-DFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFLLKVQHAFSDLE-R 82 (147)
Q Consensus 5 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~f~~~D-~ 82 (147)
..+..+|...|.++.|.|+.+|+.++|..... +.+.+.++.++..+|.+.+|+|.+.||..+|+.+..++.+|+.|| |
T Consensus 57 ~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~~Wr~vF~~~D~D 136 (221)
T KOG0037|consen 57 PQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYINQWRNVFRTYDRD 136 (221)
T ss_pred HHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHHHHHHHhcccC
Confidence 36788999999999999999999999997655 789999999999999999999999999999999999999999999 8
Q ss_pred CCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhhhhhhccccc
Q 032093 83 GRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQSARYESLKF 145 (147)
Q Consensus 83 ~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l~~~~~~~~~~~~~ 145 (147)
++|.|+..||+++|..+|+.++++-.+.+++.++....|.|.+++|+.++..++.+.+.++++
T Consensus 137 ~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~~lt~~Fr~~ 199 (221)
T KOG0037|consen 137 RSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQRLTEAFRRR 199 (221)
T ss_pred CCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999977799999999999999999887766653
No 4
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=2.7e-23 Score=131.71 Aligned_cols=132 Identities=18% Similarity=0.331 Sum_probs=124.9
Q ss_pred cHHHHHHHHhhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH-------HHHHHH
Q 032093 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF-------LLKVQH 75 (147)
Q Consensus 3 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~-------~~~~~~ 75 (147)
+..+++..|..+|++++|+|+..+|+.+++++|+.+..+++..++..+|.++.|.|++++|...+.. .+.+..
T Consensus 31 q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~ 110 (172)
T KOG0028|consen 31 QKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKK 110 (172)
T ss_pred HHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHH
Confidence 3468899999999999999999999999999999999999999999999999999999999998753 378999
Q ss_pred Hccccc-CCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 032093 76 AFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIF 134 (147)
Q Consensus 76 ~f~~~D-~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l~~ 134 (147)
+|+.+| +++|.|+..+|+.+...+|.+++++++..++..++.+.+|.|+-++|..++..
T Consensus 111 afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 111 AFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred HHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 999999 79999999999999999999999999999999999999999999999998864
No 5
>PTZ00183 centrin; Provisional
Probab=99.91 E-value=6.1e-23 Score=134.37 Aligned_cols=134 Identities=22% Similarity=0.346 Sum_probs=124.7
Q ss_pred cHHHHHHHHhhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH-------HHHHHH
Q 032093 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF-------LLKVQH 75 (147)
Q Consensus 3 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~-------~~~~~~ 75 (147)
+.++++.+|..+|++++|.|+..+|..++..+|..++...+..++..+|.+++|.|++.+|+..+.. .+.++.
T Consensus 15 ~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~ 94 (158)
T PTZ00183 15 QKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILK 94 (158)
T ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHH
Confidence 4568899999999999999999999999999999889999999999999999999999999987654 257999
Q ss_pred Hccccc-CCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhh
Q 032093 76 AFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQ 136 (147)
Q Consensus 76 ~f~~~D-~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l~~~~ 136 (147)
+|+.+| +++|.|+..+|..++...|.++++.++..++..++.+++|.|+|++|..++...|
T Consensus 95 ~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 156 (158)
T PTZ00183 95 AFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKKTN 156 (158)
T ss_pred HHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhccc
Confidence 999999 7999999999999999999999999999999999999999999999999988655
No 6
>PTZ00184 calmodulin; Provisional
Probab=99.91 E-value=1.1e-22 Score=131.71 Aligned_cols=131 Identities=21% Similarity=0.398 Sum_probs=121.6
Q ss_pred cHHHHHHHHhhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH-------HHHHH
Q 032093 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL-------LKVQH 75 (147)
Q Consensus 3 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~-------~~~~~ 75 (147)
+.+.++..|..+|.+++|.|+..+|..++..++..++.+.+..++..++.+++|.|++++|+..+... +.+..
T Consensus 9 ~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~ 88 (149)
T PTZ00184 9 QIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKE 88 (149)
T ss_pred HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHH
Confidence 45678899999999999999999999999999998889999999999999999999999999977532 57899
Q ss_pred Hccccc-CCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 032093 76 AFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCI 133 (147)
Q Consensus 76 ~f~~~D-~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l~ 133 (147)
+|+.+| +++|+|+.+++..++..+|..++..++..++..++.+++|.|+|++|..++.
T Consensus 89 ~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 89 AFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred HHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 999999 7999999999999999999999999999999999999999999999998875
No 7
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.86 E-value=3.7e-20 Score=116.82 Aligned_cols=127 Identities=18% Similarity=0.260 Sum_probs=119.0
Q ss_pred cHHHHHHHHhhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH-------HHHHHH
Q 032093 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF-------LLKVQH 75 (147)
Q Consensus 3 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~-------~~~~~~ 75 (147)
++.+++++|+.+|.|++|.|..++++..+.++|-..+++++..++... +|.|+|--|+.++.. .+.+..
T Consensus 30 QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea----~gPINft~FLTmfGekL~gtdpe~~I~~ 105 (171)
T KOG0031|consen 30 QIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEA----PGPINFTVFLTMFGEKLNGTDPEEVILN 105 (171)
T ss_pred HHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC----CCCeeHHHHHHHHHHHhcCCCHHHHHHH
Confidence 567899999999999999999999999999999999999999999864 478999999998753 478999
Q ss_pred Hccccc-CCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 032093 76 AFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCI 133 (147)
Q Consensus 76 ~f~~~D-~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l~ 133 (147)
+|+.|| ++.|.|..+.++++|...|..+++++++.+++.+..+..|.++|..|+.++.
T Consensus 106 AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 106 AFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 999999 6999999999999999999999999999999999999999999999998886
No 8
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.86 E-value=2.4e-20 Score=115.74 Aligned_cols=131 Identities=15% Similarity=0.249 Sum_probs=120.0
Q ss_pred ccHHHHHHHHhhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHhhcCC--CCCcccHHHHHHHHHHH---------
Q 032093 2 ENTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFD--RNGTMSFEEFVELNKFL--------- 70 (147)
Q Consensus 2 ~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~--~~~~i~~~ef~~~~~~~--------- 70 (147)
.+..+++.+|..||..++|.|+..+...+|+++|..+++.++.+....+..+ +-.+++|++|+-++..+
T Consensus 8 d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t~ 87 (152)
T KOG0030|consen 8 DQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGTY 87 (152)
T ss_pred chHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCcH
Confidence 3567899999999999999999999999999999999999999999988766 45789999999988765
Q ss_pred HHHHHHccccc-CCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 032093 71 LKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCI 133 (147)
Q Consensus 71 ~~~~~~f~~~D-~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l~ 133 (147)
+..-...+.+| .++|.|...+++++|..+|..+++++++.+++... |.+|.|+|+.|++.++
T Consensus 88 edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~e-D~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 88 EDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQE-DSNGCINYEAFVKHIM 150 (152)
T ss_pred HHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHcccc-ccCCcCcHHHHHHHHh
Confidence 67888899999 69999999999999999999999999999999985 9999999999998875
No 9
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.82 E-value=9.1e-19 Score=116.55 Aligned_cols=135 Identities=21% Similarity=0.354 Sum_probs=112.2
Q ss_pred cHHHHHHHHhhhCCC-CCCcccHHHHHHHHHcCCCCCCHHHHHHHHHhhcCCCCCc-ccHHHHHHHHHHH-------HHH
Q 032093 3 NTAVLREWFDRVDSE-KTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGT-MSFEEFVELNKFL-------LKV 73 (147)
Q Consensus 3 ~~~~~~~~F~~~D~~-~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~-i~~~ef~~~~~~~-------~~~ 73 (147)
+...+...|.++|.+ ++|.|+.+||..+......+ ...+++..++.+++|. |++++|+..++.. +++
T Consensus 31 EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~~~~Np----~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl 106 (187)
T KOG0034|consen 31 EIERLYERFKKLDRNNGDGYLTKEEFLSIPELALNP----LADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKL 106 (187)
T ss_pred HHHHHHHHHHHhccccccCccCHHHHHHHHHHhcCc----HHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHH
Confidence 456788899999999 99999999999998433222 3567888888888888 9999999988754 599
Q ss_pred HHHccccc-CCCCceeHHHHHHHHHHc-CCCCC--HH----HHHHHHHhcCCCCCCcccHHHHHHHHHHhhhhhhc
Q 032093 74 QHAFSDLE-RGRGYLVPDNVYEALVKI-GFSLD--SP----AFYTVCESFDQNKNGRLRLDDFISLCIFLQSARYE 141 (147)
Q Consensus 74 ~~~f~~~D-~~~G~i~~~el~~~l~~~-~~~~~--~~----~~~~~~~~~~~~~~~~i~~~eF~~~l~~~~~~~~~ 141 (147)
+-+|+.|| +++|+|+.+++.+++..+ +...+ ++ .++.++..+|.++||+|+++||.+++...|.+.+.
T Consensus 107 ~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~P~~~~~ 182 (187)
T KOG0034|consen 107 RFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQPDLLEK 182 (187)
T ss_pred HHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcCccHHHH
Confidence 99999999 899999999999999985 43333 33 37777999999999999999999999998876643
No 10
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.76 E-value=2.5e-17 Score=118.70 Aligned_cols=134 Identities=16% Similarity=0.343 Sum_probs=125.4
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHcCCCC-CCHHHHHHHHHhhcCCCCCcccHHHHHHHHH-HHHHHHHHccccc
Q 032093 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLD-FSLSVVQQMIRMYDFDRNGTMSFEEFVELNK-FLLKVQHAFSDLE 81 (147)
Q Consensus 4 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~-~~~~~~~~f~~~D 81 (147)
..+++.+|..+|.+++|.++..++...+.++..+ ...+....++..+|.+.+|.++|+||...+. +..++.++|+..|
T Consensus 13 ~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E~~l~~~F~~iD 92 (463)
T KOG0036|consen 13 DIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKELELYRIFQSID 92 (463)
T ss_pred HHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhHHHHHHHHhhhc
Confidence 3477889999999999999999999999999886 8888999999999999999999999999775 5678999999999
Q ss_pred -CCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhhh
Q 032093 82 -RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQS 137 (147)
Q Consensus 82 -~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l~~~~~ 137 (147)
+.||.|+.+|+.+.|+.+|.+++++++..++++++.++++.|++.||..+++..|.
T Consensus 93 ~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p~ 149 (463)
T KOG0036|consen 93 LEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLYPE 149 (463)
T ss_pred cccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcCCh
Confidence 89999999999999999999999999999999999999999999999999988773
No 11
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.74 E-value=2.4e-16 Score=105.17 Aligned_cols=138 Identities=21% Similarity=0.400 Sum_probs=116.1
Q ss_pred HHHHHHHHhhhCCC-CCCcccHHHHHHHHHcCCC-CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH------HHHHH
Q 032093 4 TAVLREWFDRVDSE-KTGSIAAAQLKHAFAVGNL-DFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL------LKVQH 75 (147)
Q Consensus 4 ~~~~~~~F~~~D~~-~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~------~~~~~ 75 (147)
.++++.+++.+-.+ .+|.++..+|+.++..... .-+......+++.+|.+++|.|++.||+..++.. +++.-
T Consensus 25 ~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w 104 (193)
T KOG0044|consen 25 KKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKW 104 (193)
T ss_pred HHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhh
Confidence 46788888888665 4899999999999998875 5666778899999999999999999999988754 67888
Q ss_pred Hccccc-CCCCceeHHHHHHHHHHc----CC------CC-CHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhhhhhhc
Q 032093 76 AFSDLE-RGRGYLVPDNVYEALVKI----GF------SL-DSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQSARYE 141 (147)
Q Consensus 76 ~f~~~D-~~~G~i~~~el~~~l~~~----~~------~~-~~~~~~~~~~~~~~~~~~~i~~~eF~~~l~~~~~~~~~ 141 (147)
+|+.|| +++|+|+++|+-.++.++ |. .. ..+-++.+|+.+|.|.||.||+++|+......+...+.
T Consensus 105 ~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~d~~i~~~ 182 (193)
T KOG0044|consen 105 AFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKADPSILRA 182 (193)
T ss_pred hheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhhCHHHHHH
Confidence 899999 899999999999998773 32 11 23458999999999999999999999999887765543
No 12
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.53 E-value=7.8e-14 Score=93.27 Aligned_cols=87 Identities=21% Similarity=0.406 Sum_probs=81.1
Q ss_pred ccHHHHHHHHhhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHHccccc
Q 032093 2 ENTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFLLKVQHAFSDLE 81 (147)
Q Consensus 2 ~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~f~~~D 81 (147)
...+..+.+|..+|.|++|.|+..||+++|..+|..++++..+.|+++++..++|.|.+++|+.++-.+..+.++|+.+|
T Consensus 121 ~~i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~~lt~~Fr~~D 200 (221)
T KOG0037|consen 121 KYINQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQRLTEAFRRRD 200 (221)
T ss_pred HHHHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHHHHHHHHHHHhc
Confidence 45677889999999999999999999999999999999999999999999777999999999999999999999999999
Q ss_pred -CCCCcee
Q 032093 82 -RGRGYLV 88 (147)
Q Consensus 82 -~~~G~i~ 88 (147)
+..|.|+
T Consensus 201 ~~q~G~i~ 208 (221)
T KOG0037|consen 201 TAQQGSIT 208 (221)
T ss_pred cccceeEE
Confidence 6777765
No 13
>PLN02964 phosphatidylserine decarboxylase
Probab=99.49 E-value=5.8e-13 Score=103.00 Aligned_cols=108 Identities=21% Similarity=0.338 Sum_probs=92.9
Q ss_pred cHHHHHHHHhhhCCCCCCcccHHHHHHHHHcCC-CCCCHHH---HHHHHHhhcCCCCCcccHHHHHHHHHHH------HH
Q 032093 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGN-LDFSLSV---VQQMIRMYDFDRNGTMSFEEFVELNKFL------LK 72 (147)
Q Consensus 3 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~-~~~~~~~---~~~~~~~~d~~~~~~i~~~ef~~~~~~~------~~ 72 (147)
+..+++++|..+|++++|.+ +..+++.+| ..+++.+ ++.++..+|.+++|.|+++||+.++..+ +.
T Consensus 141 qi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEE 216 (644)
T PLN02964 141 EPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANK 216 (644)
T ss_pred HHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHH
Confidence 55788999999999999997 899999999 4777776 7999999999999999999999988754 57
Q ss_pred HHHHccccc-CCCCceeHHHHHHHHHH-------------cCCCCCH-HHHHHHHHh
Q 032093 73 VQHAFSDLE-RGRGYLVPDNVYEALVK-------------IGFSLDS-PAFYTVCES 114 (147)
Q Consensus 73 ~~~~f~~~D-~~~G~i~~~el~~~l~~-------------~~~~~~~-~~~~~~~~~ 114 (147)
+..+|+.+| +++|+|+.+||..+|.. ++..++. ++++.+++.
T Consensus 217 L~eaFk~fDkDgdG~Is~dEL~~vL~~~~~~~~~~~~cp~cg~~l~~~~~~~~iiH~ 273 (644)
T PLN02964 217 KEELFKAADLNGDGVVTIDELAALLALQQEQEPIINNCPVCGEALGVSDKLNAMIHM 273 (644)
T ss_pred HHHHHHHhCCCCCCcCCHHHHHHHHHhcccCcchhhhchhhcCcccchhhHHHHHHH
Confidence 999999999 79999999999999988 5655555 566776643
No 14
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.48 E-value=2.6e-13 Score=80.33 Aligned_cols=72 Identities=18% Similarity=0.244 Sum_probs=65.4
Q ss_pred HHHHHHHHcccccC--CCCceeHHHHHHHHHH-cCCCCCH-HHHHHHHHhcCCCCCCcccHHHHHHHHHHhhhhhh
Q 032093 69 FLLKVQHAFSDLER--GRGYLVPDNVYEALVK-IGFSLDS-PAFYTVCESFDQNKNGRLRLDDFISLCIFLQSARY 140 (147)
Q Consensus 69 ~~~~~~~~f~~~D~--~~G~i~~~el~~~l~~-~~~~~~~-~~~~~~~~~~~~~~~~~i~~~eF~~~l~~~~~~~~ 140 (147)
.+..+..+|+.||. ++|+|+.+||+.+|.. +|..+++ ++++.+++.+|.|++|.|+|+||+.++..+...++
T Consensus 6 ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~~~~ 81 (89)
T cd05022 6 AIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELAKAVK 81 (89)
T ss_pred HHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 45688999999994 8999999999999999 8887888 99999999999999999999999999999876653
No 15
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=99.45 E-value=3.5e-12 Score=93.36 Aligned_cols=134 Identities=14% Similarity=0.295 Sum_probs=110.9
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHcC-CCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH-------------
Q 032093 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFAVG-NLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF------------- 69 (147)
Q Consensus 4 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~------------- 69 (147)
..++...|+.+|+.++|.|+...+..++..+ |+.++...+.--+ ...+.+|.|.|.+....+..
T Consensus 463 ~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kl--a~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slve 540 (631)
T KOG0377|consen 463 RSDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKL--ANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVE 540 (631)
T ss_pred hhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhc--cCCCcCcceehHhHHHHhhhhhHHHHHHhHHHH
Confidence 4577889999999999999999999999865 7788777665433 34456778988887775431
Q ss_pred -----HHHHHHHccccc-CCCCceeHHHHHHHHHHcC----CCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhhhhh
Q 032093 70 -----LLKVQHAFSDLE-RGRGYLVPDNVYEALVKIG----FSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQSAR 139 (147)
Q Consensus 70 -----~~~~~~~f~~~D-~~~G~i~~~el~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l~~~~~~~ 139 (147)
...++.+|...| +++|.|+.+||++++.-++ .+++++++.++...+|.|+||.|++.||++.+..+...+
T Consensus 541 tLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlvdr~~ 620 (631)
T KOG0377|consen 541 TLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLVDRRR 620 (631)
T ss_pred HHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhhcchh
Confidence 146899999999 8999999999999997654 568899999999999999999999999999998776543
No 16
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.43 E-value=2.9e-12 Score=80.75 Aligned_cols=99 Identities=19% Similarity=0.358 Sum_probs=84.8
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHH-------HHHHHHccccc-CCCCceeHHHHHHHHHHcC-CCCCHHH----HHH
Q 032093 44 QQMIRMYDFDRNGTMSFEEFVELNKFL-------LKVQHAFSDLE-RGRGYLVPDNVYEALVKIG-FSLDSPA----FYT 110 (147)
Q Consensus 44 ~~~~~~~d~~~~~~i~~~ef~~~~~~~-------~~~~~~f~~~D-~~~G~i~~~el~~~l~~~~-~~~~~~~----~~~ 110 (147)
++|...+..++.|.+++++|+.+++.+ -++..+|+.|| +++++|...++...+..+- ..+++++ ++.
T Consensus 74 ~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ek 153 (189)
T KOG0038|consen 74 RRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEK 153 (189)
T ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 578888899999999999999988754 36889999999 9999999999999998863 4577766 567
Q ss_pred HHHhcCCCCCCcccHHHHHHHHHHhhhhhhcc
Q 032093 111 VCESFDQNKNGRLRLDDFISLCIFLQSARYES 142 (147)
Q Consensus 111 ~~~~~~~~~~~~i~~~eF~~~l~~~~~~~~~~ 142 (147)
++..+|.++||++++.+|..++.+-|....++
T Consensus 154 vieEAD~DgDgkl~~~eFe~~i~raPDFlsTF 185 (189)
T KOG0038|consen 154 VIEEADLDGDGKLSFAEFEHVILRAPDFLSTF 185 (189)
T ss_pred HHHHhcCCCCCcccHHHHHHHHHhCcchHhhh
Confidence 78889999999999999999999888765443
No 17
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.43 E-value=1.9e-12 Score=76.69 Aligned_cols=74 Identities=16% Similarity=0.292 Sum_probs=66.5
Q ss_pred HHHHHHHHHccccc--CCCC-ceeHHHHHHHHHH-----cCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhhhhh
Q 032093 68 KFLLKVQHAFSDLE--RGRG-YLVPDNVYEALVK-----IGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQSAR 139 (147)
Q Consensus 68 ~~~~~~~~~f~~~D--~~~G-~i~~~el~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l~~~~~~~ 139 (147)
+.+..+..+|+.|| +++| +|+.++|+.+|+. +|...++++++.+++.+|.|++|.|+|++|+.++..+...+
T Consensus 5 ~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~~~~ 84 (88)
T cd05027 5 KAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVTTAC 84 (88)
T ss_pred HHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHH
Confidence 34568999999997 4899 6999999999999 88888999999999999999999999999999999888766
Q ss_pred hc
Q 032093 140 YE 141 (147)
Q Consensus 140 ~~ 141 (147)
+.
T Consensus 85 ~~ 86 (88)
T cd05027 85 HE 86 (88)
T ss_pred hh
Confidence 54
No 18
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.42 E-value=1.1e-12 Score=77.69 Aligned_cols=67 Identities=19% Similarity=0.245 Sum_probs=61.5
Q ss_pred HHHHHHHHhhhCC-CCCCcccHHHHHHHHHc-CCCCCCH-HHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q 032093 4 TAVLREWFDRVDS-EKTGSIAAAQLKHAFAV-GNLDFSL-SVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (147)
Q Consensus 4 ~~~~~~~F~~~D~-~~~g~i~~~e~~~~l~~-~~~~~~~-~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (147)
...+..+|+.||+ +++|.|+..||+.++.. +|..++. ++++.+++.+|.|++|.|+|+||+.++..+
T Consensus 7 i~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 7 IETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 4578899999999 99999999999999999 8877887 999999999999999999999999987654
No 19
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=7.8e-13 Score=93.16 Aligned_cols=124 Identities=17% Similarity=0.258 Sum_probs=105.9
Q ss_pred HHHHhhhCCCCCCcccHHHHHHHHHcCCC-CCCHHHHHHHHHhhcCCCCCcccHHHHHHHH-HH----------HHHHHH
Q 032093 8 REWFDRVDSEKTGSIAAAQLKHAFAVGNL-DFSLSVVQQMIRMYDFDRNGTMSFEEFVELN-KF----------LLKVQH 75 (147)
Q Consensus 8 ~~~F~~~D~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~-~~----------~~~~~~ 75 (147)
++.|+..|.|++|.++.+||..+|..--. .+..-.++..+..+|.|++|.|+++||+.-+ .+ +..-.+
T Consensus 166 e~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~Ere~ 245 (325)
T KOG4223|consen 166 EERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLTEREQ 245 (325)
T ss_pred HHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcccccccHHH
Confidence 56799999999999999999999875433 5666778889999999999999999999744 22 134567
Q ss_pred Hccccc-CCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHH
Q 032093 76 AFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISL 131 (147)
Q Consensus 76 ~f~~~D-~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eF~~~ 131 (147)
.+..+| +++|+++.+|++.-+...+......++..++..+|.|+||++|++|.+..
T Consensus 246 F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~~ 302 (325)
T KOG4223|consen 246 FFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEADEDKDGKLSKEEILEH 302 (325)
T ss_pred HHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhccCccccccHHHHhhC
Confidence 778889 79999999999988877777888999999999999999999999997654
No 20
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.42 E-value=9.6e-13 Score=73.91 Aligned_cols=61 Identities=23% Similarity=0.619 Sum_probs=53.5
Q ss_pred HHHHHccccc-CCCCceeHHHHHHHHHHcCCCCCHHH----HHHHHHhcCCCCCCcccHHHHHHHH
Q 032093 72 KVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPA----FYTVCESFDQNKNGRLRLDDFISLC 132 (147)
Q Consensus 72 ~~~~~f~~~D-~~~G~i~~~el~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~~eF~~~l 132 (147)
+++.+|+.+| +++|+|+.+||..++..++...++.. ++.++..+|.|++|.|+++||++++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 4789999999 79999999999999999987665544 5555999999999999999999875
No 21
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.41 E-value=1.7e-12 Score=72.86 Aligned_cols=62 Identities=31% Similarity=0.550 Sum_probs=54.0
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHcCCCCCCHH----HHHHHHHhhcCCCCCcccHHHHHHHH
Q 032093 6 VLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLS----VVQQMIRMYDFDRNGTMSFEEFVELN 67 (147)
Q Consensus 6 ~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~----~~~~~~~~~d~~~~~~i~~~ef~~~~ 67 (147)
.++++|..+|.+++|.|+.+||..++..++...+.. .++.+++.+|.+++|.|+++||..++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 478999999999999999999999999998766554 45555999999999999999998864
No 22
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.40 E-value=3e-12 Score=75.80 Aligned_cols=74 Identities=19% Similarity=0.303 Sum_probs=66.0
Q ss_pred HHHHHHHHHccccc--CC-CCceeHHHHHHHHHH---cCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhhhhhhc
Q 032093 68 KFLLKVQHAFSDLE--RG-RGYLVPDNVYEALVK---IGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQSARYE 141 (147)
Q Consensus 68 ~~~~~~~~~f~~~D--~~-~G~i~~~el~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l~~~~~~~~~ 141 (147)
..+..+..+|..|| +| +|+|+.+||+++|.. +|..+++++++.+++.+|.+++|.|+|++|+.++..+...++.
T Consensus 7 ~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~~~~~~ 86 (88)
T cd05029 7 QAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALALIYNE 86 (88)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHhh
Confidence 34567889999999 36 789999999999973 6888999999999999999999999999999999999887754
No 23
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.35 E-value=9.6e-12 Score=73.64 Aligned_cols=67 Identities=19% Similarity=0.284 Sum_probs=61.3
Q ss_pred HHHHHHHHhhhC-CCCCC-cccHHHHHHHHHc-----CCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q 032093 4 TAVLREWFDRVD-SEKTG-SIAAAQLKHAFAV-----GNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (147)
Q Consensus 4 ~~~~~~~F~~~D-~~~~g-~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (147)
...+.++|..+| .+++| .|+..+|+.+|+. +|..+++.+++.+++.+|.+++|.|+|++|+.++...
T Consensus 7 ~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 7 MVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 457899999998 79999 5999999999999 8988999999999999999999999999999887643
No 24
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=8.5e-12 Score=87.99 Aligned_cols=134 Identities=17% Similarity=0.319 Sum_probs=111.2
Q ss_pred cHHHHHHHHhhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHH--------------
Q 032093 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNK-------------- 68 (147)
Q Consensus 3 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~-------------- 68 (147)
...++..++.++|.+++|.|+..+++..+....-.....+..+-+..++.+.+|.|+|+++....-
T Consensus 75 ~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~ 154 (325)
T KOG4223|consen 75 SQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEED 154 (325)
T ss_pred hHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccchh
Confidence 456788999999999999999999999887655555566777888889999999999999987542
Q ss_pred ------HHHHHHHHccccc-CCCCceeHHHHHHHHHHcCC-CCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhh
Q 032093 69 ------FLLKVQHAFSDLE-RGRGYLVPDNVYEALVKIGF-SLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQ 136 (147)
Q Consensus 69 ------~~~~~~~~f~~~D-~~~G~i~~~el~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l~~~~ 136 (147)
.+..-++-|+.-| +++|.++.+||..+|..-.. ++.+-.+..-+...|.|+||.|+++||+.-+....
T Consensus 155 ~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~ 230 (325)
T KOG4223|consen 155 NEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHE 230 (325)
T ss_pred cHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhcc
Confidence 1246788899999 89999999999999977543 35566788889999999999999999998776543
No 25
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.33 E-value=3e-11 Score=78.71 Aligned_cols=96 Identities=16% Similarity=0.257 Sum_probs=84.8
Q ss_pred cHHHHHHHHhhhCCCCCCcccHHHHHHHHHcCCCCC-----CHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH------H
Q 032093 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDF-----SLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL------L 71 (147)
Q Consensus 3 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~-----~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~------~ 71 (147)
...++..++..+|.+++|.|+..+|..++...+... +.++++.+|+.+|.+++|+|+..|+..++..+ +
T Consensus 42 t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~ 121 (151)
T KOG0027|consen 42 TEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDE 121 (151)
T ss_pred CHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHH
Confidence 457889999999999999999999999999876533 34599999999999999999999999998765 6
Q ss_pred HHHHHccccc-CCCCceeHHHHHHHHHH
Q 032093 72 KVQHAFSDLE-RGRGYLVPDNVYEALVK 98 (147)
Q Consensus 72 ~~~~~f~~~D-~~~G~i~~~el~~~l~~ 98 (147)
.+..+++..| +++|.|+.++|.+++..
T Consensus 122 e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 122 ECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred HHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 8999999999 89999999999988854
No 26
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.31 E-value=1.3e-11 Score=80.01 Aligned_cols=95 Identities=15% Similarity=0.279 Sum_probs=81.8
Q ss_pred cHHHHHHHHhhhCCCCCCcccHHHHHHHHHcCC-CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH------HHHHH
Q 032093 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGN-LDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL------LKVQH 75 (147)
Q Consensus 3 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~------~~~~~ 75 (147)
....+.++|..+|. +.|.|+..+|..++.... ...+++++...++.+|.+++|+|+..+++.+++.+ +.+..
T Consensus 54 s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ 132 (160)
T COG5126 54 SEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEK 132 (160)
T ss_pred cHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHH
Confidence 45678889999988 889999999999998654 46668999999999999999999999999988765 68999
Q ss_pred Hccccc-CCCCceeHHHHHHHHHH
Q 032093 76 AFSDLE-RGRGYLVPDNVYEALVK 98 (147)
Q Consensus 76 ~f~~~D-~~~G~i~~~el~~~l~~ 98 (147)
+++.+| +++|.|+.++|.+.+..
T Consensus 133 ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 133 LLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred HHHhcCCCCCceEeHHHHHHHHhc
Confidence 999999 79999999999987743
No 27
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.30 E-value=2.4e-11 Score=72.79 Aligned_cols=73 Identities=18% Similarity=0.271 Sum_probs=62.3
Q ss_pred HHHHHHHHHccccc-C-CCC-ceeHHHHHHHHHH-c----CCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhhhhh
Q 032093 68 KFLLKVQHAFSDLE-R-GRG-YLVPDNVYEALVK-I----GFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQSAR 139 (147)
Q Consensus 68 ~~~~~~~~~f~~~D-~-~~G-~i~~~el~~~l~~-~----~~~~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l~~~~~~~ 139 (147)
..+..+..+|..|| . ++| +|+.+||+.++.. . +...++.+++.++..+|.|++|.|+|++|+.++..+...+
T Consensus 7 ~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~~~~ 86 (93)
T cd05026 7 GAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALTVAC 86 (93)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 34568899999999 4 888 5999999999976 2 3345788999999999999999999999999999988765
Q ss_pred h
Q 032093 140 Y 140 (147)
Q Consensus 140 ~ 140 (147)
+
T Consensus 87 ~ 87 (93)
T cd05026 87 N 87 (93)
T ss_pred H
Confidence 4
No 28
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.29 E-value=2.7e-11 Score=65.25 Aligned_cols=52 Identities=25% Similarity=0.457 Sum_probs=49.2
Q ss_pred CCCceeHHHHHHHHHHcCCC-CCHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 032093 83 GRGYLVPDNVYEALVKIGFS-LDSPAFYTVCESFDQNKNGRLRLDDFISLCIF 134 (147)
Q Consensus 83 ~~G~i~~~el~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l~~ 134 (147)
.+|.|+.++|+.+|..+|.. ++++++..++..+|.+++|.|+|+||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999889999 99999999999999999999999999999864
No 29
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.29 E-value=3.1e-11 Score=80.77 Aligned_cols=95 Identities=20% Similarity=0.300 Sum_probs=84.9
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH--------------
Q 032093 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF-------------- 69 (147)
Q Consensus 4 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~-------------- 69 (147)
..-...+|+.+|.+++|.|+..||..++..+.-...++.++=.++.||.+++|+|++.|++.++..
T Consensus 63 ~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~ 142 (193)
T KOG0044|consen 63 SKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDE 142 (193)
T ss_pred HHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCccc
Confidence 345578999999999999999999999998888888888888999999999999999999998753
Q ss_pred ---HHHHHHHccccc-CCCCceeHHHHHHHHHH
Q 032093 70 ---LLKVQHAFSDLE-RGRGYLVPDNVYEALVK 98 (147)
Q Consensus 70 ---~~~~~~~f~~~D-~~~G~i~~~el~~~l~~ 98 (147)
.+.+..+|+.+| +++|.||.+||...+.+
T Consensus 143 ~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 143 ETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred ccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 357899999999 89999999999998865
No 30
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.29 E-value=3.8e-11 Score=72.36 Aligned_cols=73 Identities=16% Similarity=0.381 Sum_probs=65.0
Q ss_pred cHHHHHHHHhhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHHc
Q 032093 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFLLKVQHAF 77 (147)
Q Consensus 3 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~f 77 (147)
+...++.+|..+|.+++|.|+..+++.+++..| ++.++++.++..++.+++|.|++++|+.++..+.+....+
T Consensus 8 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~~g~ 80 (96)
T smart00027 8 DKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKLNGY 80 (96)
T ss_pred HHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHcCC
Confidence 456889999999999999999999999999865 6788999999999999999999999999998777666543
No 31
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.28 E-value=4.1e-11 Score=71.67 Aligned_cols=74 Identities=18% Similarity=0.271 Sum_probs=63.9
Q ss_pred HHHHHHHHccccc--CCCC-ceeHHHHHHHHHH-cC----CCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhhhhhh
Q 032093 69 FLLKVQHAFSDLE--RGRG-YLVPDNVYEALVK-IG----FSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQSARY 140 (147)
Q Consensus 69 ~~~~~~~~f~~~D--~~~G-~i~~~el~~~l~~-~~----~~~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l~~~~~~~~ 140 (147)
.++.++.+|+.|| +++| .|+..+++.+|+. +| ..+++++++.++..++.+++|.|+|++|+.++..+.+.++
T Consensus 7 ~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~~~~~ 86 (92)
T cd05025 7 AMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALTVACN 86 (92)
T ss_pred HHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 3467999999996 4999 5999999999986 54 3468899999999999999999999999999999888775
Q ss_pred cc
Q 032093 141 ES 142 (147)
Q Consensus 141 ~~ 142 (147)
.+
T Consensus 87 ~~ 88 (92)
T cd05025 87 NF 88 (92)
T ss_pred HH
Confidence 43
No 32
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.26 E-value=6.4e-11 Score=70.10 Aligned_cols=67 Identities=15% Similarity=0.287 Sum_probs=59.8
Q ss_pred HHHHHHHHhhhCC-CC-CCcccHHHHHHHHH---cCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q 032093 4 TAVLREWFDRVDS-EK-TGSIAAAQLKHAFA---VGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (147)
Q Consensus 4 ~~~~~~~F~~~D~-~~-~g~i~~~e~~~~l~---~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (147)
...+-.+|.+||. ++ +|+|+..||+.++. .+|..++.+++..+++.+|.+++|.|+|+||+.++..+
T Consensus 9 ~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 9 IGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 3467789999998 67 89999999999997 36889999999999999999999999999999887654
No 33
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.23 E-value=1.1e-10 Score=70.02 Aligned_cols=71 Identities=21% Similarity=0.333 Sum_probs=61.5
Q ss_pred HHHHHHHHccccc--CC-CCceeHHHHHHHHHH-----cCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhhhhh
Q 032093 69 FLLKVQHAFSDLE--RG-RGYLVPDNVYEALVK-----IGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQSAR 139 (147)
Q Consensus 69 ~~~~~~~~f~~~D--~~-~G~i~~~el~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l~~~~~~~ 139 (147)
.+..++.+|..+| ++ +|+|+.+|++.+|+. +|..++.++++.++..++.+++|.|+|++|+.++....-..
T Consensus 6 ~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~~~ 84 (94)
T cd05031 6 AMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSIAC 84 (94)
T ss_pred HHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHH
Confidence 3567999999998 34 699999999999986 46678899999999999999999999999999988766443
No 34
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.23 E-value=7.6e-11 Score=66.13 Aligned_cols=61 Identities=23% Similarity=0.391 Sum_probs=55.8
Q ss_pred HHHHhhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q 032093 8 REWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (147)
Q Consensus 8 ~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (147)
+.+|..+|++++|.|+..++..++..+|. +.++++.++..++.+++|.|++++|+.++...
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 57899999999999999999999998875 78889999999999999999999999987654
No 35
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.23 E-value=8.5e-11 Score=70.58 Aligned_cols=67 Identities=24% Similarity=0.316 Sum_probs=59.9
Q ss_pred HHHHHHHHhhhCC-CC-CCcccHHHHHHHHHc-----CCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q 032093 4 TAVLREWFDRVDS-EK-TGSIAAAQLKHAFAV-----GNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (147)
Q Consensus 4 ~~~~~~~F~~~D~-~~-~g~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (147)
...++.+|..+|. ++ +|.|+..|++.++.. +|..++..+++.++..+|.+++|.|+|++|+.++...
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 4578899999997 87 699999999999986 5678899999999999999999999999999988654
No 36
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.22 E-value=1.8e-10 Score=68.92 Aligned_cols=68 Identities=21% Similarity=0.290 Sum_probs=59.5
Q ss_pred HHHHHHHHhhhC-CCCCC-cccHHHHHHHHHc-CC----CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHH
Q 032093 4 TAVLREWFDRVD-SEKTG-SIAAAQLKHAFAV-GN----LDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFLL 71 (147)
Q Consensus 4 ~~~~~~~F~~~D-~~~~g-~i~~~e~~~~l~~-~~----~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~ 71 (147)
...++++|..+| .+++| .|+..+|+.+|+. +| ..++..+++.++..+|.+++|.|+|.+|+.++..+-
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 467899999997 99999 5999999999985 43 356889999999999999999999999999887553
No 37
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.22 E-value=1.5e-10 Score=68.69 Aligned_cols=74 Identities=18% Similarity=0.219 Sum_probs=62.5
Q ss_pred HHHHHHHHHccccc--CCCC-ceeHHHHHHHHHHc-----CCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhhhhh
Q 032093 68 KFLLKVQHAFSDLE--RGRG-YLVPDNVYEALVKI-----GFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQSAR 139 (147)
Q Consensus 68 ~~~~~~~~~f~~~D--~~~G-~i~~~el~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l~~~~~~~ 139 (147)
..+..+..+|+.|. +++| +|+.+||+.++... +...++.+++.+++.+|.|++|.|+|++|+.++..+...+
T Consensus 6 ~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~~~~ 85 (89)
T cd05023 6 RCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLAVAC 85 (89)
T ss_pred HHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHHHH
Confidence 34568899999955 4655 99999999999885 3456788999999999999999999999999999988766
Q ss_pred hc
Q 032093 140 YE 141 (147)
Q Consensus 140 ~~ 141 (147)
+.
T Consensus 86 ~~ 87 (89)
T cd05023 86 HE 87 (89)
T ss_pred Hh
Confidence 53
No 38
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.22 E-value=1.2e-10 Score=69.75 Aligned_cols=67 Identities=19% Similarity=0.266 Sum_probs=57.6
Q ss_pred HHHHHHHHhhhC-CCCCC-cccHHHHHHHHHc-C----CCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q 032093 4 TAVLREWFDRVD-SEKTG-SIAAAQLKHAFAV-G----NLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (147)
Q Consensus 4 ~~~~~~~F~~~D-~~~~g-~i~~~e~~~~l~~-~----~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (147)
...+.++|..|| .+++| .|+..||+.++.. + +...+..++..+++.+|.+++|.|+|+||+.++..+
T Consensus 9 ~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 9 MDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 456778899999 78998 5999999999976 2 344578899999999999999999999999988765
No 39
>PTZ00183 centrin; Provisional
Probab=99.22 E-value=4.7e-10 Score=73.16 Aligned_cols=95 Identities=18% Similarity=0.336 Sum_probs=81.7
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHH------HHHHHHccccc-CCCCceeHHHHHHHHHHc-CCCCCHHHHHHHH
Q 032093 41 SVVQQMIRMYDFDRNGTMSFEEFVELNKFL------LKVQHAFSDLE-RGRGYLVPDNVYEALVKI-GFSLDSPAFYTVC 112 (147)
Q Consensus 41 ~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~------~~~~~~f~~~D-~~~G~i~~~el~~~l~~~-~~~~~~~~~~~~~ 112 (147)
.++..++..+|.+++|.|+..+|..++..+ ..+..+|..+| +++|.|+..+|..++... ......+.+..+|
T Consensus 17 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F 96 (158)
T PTZ00183 17 KEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAF 96 (158)
T ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 456778889999999999999999988753 46899999999 799999999999988764 3345667899999
Q ss_pred HhcCCCCCCcccHHHHHHHHHHh
Q 032093 113 ESFDQNKNGRLRLDDFISLCIFL 135 (147)
Q Consensus 113 ~~~~~~~~~~i~~~eF~~~l~~~ 135 (147)
+.+|.+++|.|+..+|..++...
T Consensus 97 ~~~D~~~~G~i~~~e~~~~l~~~ 119 (158)
T PTZ00183 97 RLFDDDKTGKISLKNLKRVAKEL 119 (158)
T ss_pred HHhCCCCCCcCcHHHHHHHHHHh
Confidence 99999999999999999998754
No 40
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.19 E-value=1.3e-10 Score=62.58 Aligned_cols=52 Identities=27% Similarity=0.523 Sum_probs=49.0
Q ss_pred CCCcccHHHHHHHHHcCCCC-CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q 032093 18 KTGSIAAAQLKHAFAVGNLD-FSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF 69 (147)
Q Consensus 18 ~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 69 (147)
++|.|+.++|+.++..+|.. ++.++++.++..+|.+++|.|+++||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999999999 99999999999999999999999999998764
No 41
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.19 E-value=1.4e-10 Score=65.06 Aligned_cols=63 Identities=22% Similarity=0.389 Sum_probs=56.9
Q ss_pred HHHccccc-CCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhhhh
Q 032093 74 QHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQSA 138 (147)
Q Consensus 74 ~~~f~~~D-~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l~~~~~~ 138 (147)
+.+|+.+| +++|.|+.+++..++...|. +.+++..++..++.+++|.|+|.+|+.++..++..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~ 65 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIALA 65 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHH
Confidence 56899999 79999999999999999874 78899999999999999999999999999877653
No 42
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.17 E-value=3.4e-10 Score=68.20 Aligned_cols=70 Identities=19% Similarity=0.234 Sum_probs=63.0
Q ss_pred HHHHHHHHccccc-CCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhhhhhh
Q 032093 69 FLLKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQSARY 140 (147)
Q Consensus 69 ~~~~~~~~f~~~D-~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l~~~~~~~~ 140 (147)
....+..+|..+| +++|.|+.++++.+|+..| ++.+++..++..++.+.+|.|+|++|+.++..+..+..
T Consensus 8 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~~ 78 (96)
T smart00027 8 DKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKLN 78 (96)
T ss_pred HHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHc
Confidence 4567899999999 7999999999999999876 67889999999999999999999999999998876653
No 43
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.17 E-value=2.9e-10 Score=67.37 Aligned_cols=68 Identities=16% Similarity=0.284 Sum_probs=59.5
Q ss_pred cHHHHHHHHhhhCC--CCCCcccHHHHHHHHHc-CCCC----CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q 032093 3 NTAVLREWFDRVDS--EKTGSIAAAQLKHAFAV-GNLD----FSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (147)
Q Consensus 3 ~~~~~~~~F~~~D~--~~~g~i~~~e~~~~l~~-~~~~----~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (147)
..+.++.+|..+|+ +++|.|+..+|..+++. +|.. .+..++..++..++.+++|.|+|++|+.++...
T Consensus 6 ~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 6 AIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 45678899999999 89999999999999986 4543 458999999999999999999999999988754
No 44
>PTZ00184 calmodulin; Provisional
Probab=99.14 E-value=1.6e-09 Score=69.81 Aligned_cols=95 Identities=15% Similarity=0.265 Sum_probs=80.7
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHH------HHHHHHccccc-CCCCceeHHHHHHHHHHc-CCCCCHHHHHHHH
Q 032093 41 SVVQQMIRMYDFDRNGTMSFEEFVELNKFL------LKVQHAFSDLE-RGRGYLVPDNVYEALVKI-GFSLDSPAFYTVC 112 (147)
Q Consensus 41 ~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~------~~~~~~f~~~D-~~~G~i~~~el~~~l~~~-~~~~~~~~~~~~~ 112 (147)
..+...+..+|.+++|.|++++|..++..+ +.+..+|..+| +++|.|+.++|..++... ........+..+|
T Consensus 11 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F 90 (149)
T PTZ00184 11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAF 90 (149)
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 346678888999999999999999987653 47899999999 799999999999998764 3334566789999
Q ss_pred HhcCCCCCCcccHHHHHHHHHHh
Q 032093 113 ESFDQNKNGRLRLDDFISLCIFL 135 (147)
Q Consensus 113 ~~~~~~~~~~i~~~eF~~~l~~~ 135 (147)
..+|.+++|.|+..+|..++...
T Consensus 91 ~~~D~~~~g~i~~~e~~~~l~~~ 113 (149)
T PTZ00184 91 KVFDRDGNGFISAAELRHVMTNL 113 (149)
T ss_pred HhhCCCCCCeEeHHHHHHHHHHH
Confidence 99999999999999999988764
No 45
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.11 E-value=6.5e-10 Score=60.76 Aligned_cols=61 Identities=39% Similarity=0.548 Sum_probs=57.4
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 032093 7 LREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELN 67 (147)
Q Consensus 7 ~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~ 67 (147)
+..+|..+|.+++|.|+..++..++..++...+...+..++..++.+++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999999999999999999999999999999999999999999999998764
No 46
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.08 E-value=2.1e-09 Score=71.85 Aligned_cols=92 Identities=21% Similarity=0.353 Sum_probs=80.3
Q ss_pred HHHHhhhCCCCCCc-ccHHHHHHHHHcCCCCCCHH-HHHHHHHhhcCCCCCcccHHHHHHHHHHH-------------HH
Q 032093 8 REWFDRVDSEKTGS-IAAAQLKHAFAVGNLDFSLS-VVQQMIRMYDFDRNGTMSFEEFVELNKFL-------------LK 72 (147)
Q Consensus 8 ~~~F~~~D~~~~g~-i~~~e~~~~l~~~~~~~~~~-~~~~~~~~~d~~~~~~i~~~ef~~~~~~~-------------~~ 72 (147)
.+++..++++++|. |+.++|..++......-+.. .++-+++.||.+++|.|+.+|+..++..+ ..
T Consensus 69 ~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i 148 (187)
T KOG0034|consen 69 DRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDI 148 (187)
T ss_pred HHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHH
Confidence 57888999988888 99999999999887655555 89999999999999999999999987543 46
Q ss_pred HHHHccccc-CCCCceeHHHHHHHHHHc
Q 032093 73 VQHAFSDLE-RGRGYLVPDNVYEALVKI 99 (147)
Q Consensus 73 ~~~~f~~~D-~~~G~i~~~el~~~l~~~ 99 (147)
+...|..+| +++|+|+.+|+.+++...
T Consensus 149 ~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 149 VDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 889999999 899999999999999764
No 47
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.07 E-value=1e-09 Score=65.05 Aligned_cols=71 Identities=20% Similarity=0.257 Sum_probs=60.7
Q ss_pred HHHHHHHHcccccC---CCCceeHHHHHHHHHH-cCCC----CCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhhhhh
Q 032093 69 FLLKVQHAFSDLER---GRGYLVPDNVYEALVK-IGFS----LDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQSAR 139 (147)
Q Consensus 69 ~~~~~~~~f~~~D~---~~G~i~~~el~~~l~~-~~~~----~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l~~~~~~~ 139 (147)
.+..++.+|..+|. ++|.|+.+++..+++. +|.+ .+.+++..++..++.+++|.|+|++|+.++....+..
T Consensus 6 ~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~~~~ 84 (88)
T cd00213 6 AIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLAVAC 84 (88)
T ss_pred HHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHHHHH
Confidence 35678899999994 8999999999999986 5544 4589999999999999999999999999998776543
No 48
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=99.07 E-value=9.1e-10 Score=65.24 Aligned_cols=71 Identities=20% Similarity=0.317 Sum_probs=60.8
Q ss_pred HHHHHHHHccccc-C--CCCceeHHHHHHHHH-HcCCCCC----HHHHHHHHHhcCCCCCCcccHHHHHHHHHHhhhhh
Q 032093 69 FLLKVQHAFSDLE-R--GRGYLVPDNVYEALV-KIGFSLD----SPAFYTVCESFDQNKNGRLRLDDFISLCIFLQSAR 139 (147)
Q Consensus 69 ~~~~~~~~f~~~D-~--~~G~i~~~el~~~l~-~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~eF~~~l~~~~~~~ 139 (147)
.+..+...|..|+ + ++|.|+.+||+.+|. .+|..++ +++++.++..++.+++|.|+|++|+.++..+...+
T Consensus 6 ~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~~~~ 84 (88)
T cd05030 6 AIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVGVAA 84 (88)
T ss_pred HHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHHHh
Confidence 3467889999999 4 479999999999997 5565566 89999999999999999999999999998776544
No 49
>PF14658 EF-hand_9: EF-hand domain
Probab=99.07 E-value=8.2e-10 Score=60.93 Aligned_cols=60 Identities=23% Similarity=0.372 Sum_probs=56.9
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHHcCCC-CCCHHHHHHHHHhhcCCCC-CcccHHHHHHHHH
Q 032093 9 EWFDRVDSEKTGSIAAAQLKHAFAVGNL-DFSLSVVQQMIRMYDFDRN-GTMSFEEFVELNK 68 (147)
Q Consensus 9 ~~F~~~D~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~-~~i~~~ef~~~~~ 68 (147)
.+|..+|+++.|.|...++..+|++.+. .+.+.+++.+.+.+|+++. |.|+++.|+..|+
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~ 63 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMR 63 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHH
Confidence 4799999999999999999999999988 9999999999999999999 9999999999876
No 50
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.06 E-value=1.7e-09 Score=64.16 Aligned_cols=67 Identities=16% Similarity=0.328 Sum_probs=57.5
Q ss_pred HHHHHHHHhh-hCCCCCC-cccHHHHHHHHHcC-----CCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q 032093 4 TAVLREWFDR-VDSEKTG-SIAAAQLKHAFAVG-----NLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (147)
Q Consensus 4 ~~~~~~~F~~-~D~~~~g-~i~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (147)
...+..+|.. .|.+++| .|+..||+.++..- +...++.++..+++.+|.+++|.|+|+||+.++..+
T Consensus 8 i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 8 IESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 4578889999 6677876 99999999999975 345678899999999999999999999999987654
No 51
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.04 E-value=1.5e-09 Score=59.28 Aligned_cols=60 Identities=22% Similarity=0.488 Sum_probs=55.6
Q ss_pred HHHHccccc-CCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 032093 73 VQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLC 132 (147)
Q Consensus 73 ~~~~f~~~D-~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l 132 (147)
+..+|..+| +++|.|+.+++..++..++.+.+.+.+..++..++.+++|.|++++|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 567899999 799999999999999999999999999999999999999999999998765
No 52
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.97 E-value=8.8e-09 Score=84.77 Aligned_cols=123 Identities=17% Similarity=0.346 Sum_probs=98.3
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHcCCCCC--CHH-----HHHHHHHhhcCCCCCcccHHHHHHHHHHH------
Q 032093 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDF--SLS-----VVQQMIRMYDFDRNGTMSFEEFVELNKFL------ 70 (147)
Q Consensus 4 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~--~~~-----~~~~~~~~~d~~~~~~i~~~ef~~~~~~~------ 70 (147)
..++.-+|..||++++|.++..+|+.+|+.+|..+ -++ +++.++...|++.+|+|+..+|.++|-..
T Consensus 2252 L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~ 2331 (2399)
T KOG0040|consen 2252 LKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENIL 2331 (2399)
T ss_pred HHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhccccccc
Confidence 46788899999999999999999999999998854 334 89999999999999999999999987432
Q ss_pred --HHHHHHcccccCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhc----CC----CCCCcccHHHHHHHHH
Q 032093 71 --LKVQHAFSDLERGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESF----DQ----NKNGRLRLDDFISLCI 133 (147)
Q Consensus 71 --~~~~~~f~~~D~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~----~~----~~~~~i~~~eF~~~l~ 133 (147)
+.++.+|+.+|.+..+|+++++...| |+++++-.+..+ +. ...+.+.|.+|.+-+.
T Consensus 2332 s~~eIE~AfraL~a~~~yvtke~~~~~l-------treqaefc~s~m~~~~e~~~~~s~q~~l~y~dfv~sl~ 2397 (2399)
T KOG0040|consen 2332 SSEEIEDAFRALDAGKPYVTKEELYQNL-------TREQAEFCMSKMKPYAETSSGRSDQVALDYKDFVNSLF 2397 (2399)
T ss_pred chHHHHHHHHHhhcCCccccHHHHHhcC-------CHHHHHHHHHHhhhhcccccCCCccccccHHHHHHHHh
Confidence 58999999999888999998876544 555655554443 22 2233588999987653
No 53
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.97 E-value=2e-08 Score=64.44 Aligned_cols=96 Identities=16% Similarity=0.304 Sum_probs=83.0
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHH------HHHHHHccccc-CCCCceeHHHHHHHHHH-cCCCCCHHHHHHHH
Q 032093 41 SVVQQMIRMYDFDRNGTMSFEEFVELNKFL------LKVQHAFSDLE-RGRGYLVPDNVYEALVK-IGFSLDSPAFYTVC 112 (147)
Q Consensus 41 ~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~------~~~~~~f~~~D-~~~G~i~~~el~~~l~~-~~~~~~~~~~~~~~ 112 (147)
.+++..+..++++++|+|+++|+...+..+ +.+..+..-+| +++|.|+.++|..++.. ++..-+.+++...|
T Consensus 33 q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~af 112 (172)
T KOG0028|consen 33 QEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAF 112 (172)
T ss_pred hhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHH
Confidence 568889999999999999999996555433 67788888889 69999999999999875 67777999999999
Q ss_pred HhcCCCCCCcccHHHHHHHHHHhh
Q 032093 113 ESFDQNKNGRLRLDDFISLCIFLQ 136 (147)
Q Consensus 113 ~~~~~~~~~~i~~~eF~~~l~~~~ 136 (147)
+.+|.+++|.||..+|+.+...+.
T Consensus 113 rl~D~D~~Gkis~~~lkrvakeLg 136 (172)
T KOG0028|consen 113 RLFDDDKTGKISQRNLKRVAKELG 136 (172)
T ss_pred HcccccCCCCcCHHHHHHHHHHhC
Confidence 999999999999999998877654
No 54
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.96 E-value=5.1e-09 Score=64.96 Aligned_cols=60 Identities=18% Similarity=0.341 Sum_probs=47.3
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 032093 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELN 67 (147)
Q Consensus 4 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~ 67 (147)
+..+.-+|..+|.|++|.|+.+|+..+. +......+..++..+|.|++|.|+++||..++
T Consensus 47 ~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 47 KDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 3456778888888888888888888765 34456777888888888888888888888876
No 55
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.95 E-value=9.8e-09 Score=60.54 Aligned_cols=74 Identities=20% Similarity=0.289 Sum_probs=62.8
Q ss_pred HHHHHHHHcccccCCCCceeHHHHHHHHHH-----cCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhhhhhhcc
Q 032093 69 FLLKVQHAFSDLERGRGYLVPDNVYEALVK-----IGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQSARYES 142 (147)
Q Consensus 69 ~~~~~~~~f~~~D~~~G~i~~~el~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l~~~~~~~~~~ 142 (147)
.+..+..+|..|..+.|.+++.||+.+|.. ++...+++.++.+++..|.|+||.|+|.||+.++..+..+++.+
T Consensus 6 ai~~lI~~FhkYaG~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~~ac~~~ 84 (91)
T cd05024 6 SMEKMMLTFHKFAGEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLLIACNDY 84 (91)
T ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHHHHH
Confidence 456778889999855679999999999976 23445788999999999999999999999999999998877644
No 56
>PF14658 EF-hand_9: EF-hand domain
Probab=98.93 E-value=7.9e-09 Score=57.06 Aligned_cols=60 Identities=15% Similarity=0.280 Sum_probs=55.3
Q ss_pred HHccccc-CCCCceeHHHHHHHHHHcCC-CCCHHHHHHHHHhcCCCCC-CcccHHHHHHHHHH
Q 032093 75 HAFSDLE-RGRGYLVPDNVYEALVKIGF-SLDSPAFYTVCESFDQNKN-GRLRLDDFISLCIF 134 (147)
Q Consensus 75 ~~f~~~D-~~~G~i~~~el~~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~i~~~eF~~~l~~ 134 (147)
.+|..+| ++.|.|...++..+|+.++. ..++.+++.+.+.+|+++. |.|++++|+..|..
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 4799999 69999999999999999998 8889999999999999887 99999999998863
No 57
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.92 E-value=7.1e-09 Score=76.08 Aligned_cols=126 Identities=17% Similarity=0.204 Sum_probs=100.8
Q ss_pred HHHHhhhCCCCCCcccHHHHHHHHHcCCC---CCCHHHHHHHHHhhcCCCCCcccHHHHHHHH---HHHHHHHHHccccc
Q 032093 8 REWFDRVDSEKTGSIAAAQLKHAFAVGNL---DFSLSVVQQMIRMYDFDRNGTMSFEEFVELN---KFLLKVQHAFSDLE 81 (147)
Q Consensus 8 ~~~F~~~D~~~~g~i~~~e~~~~l~~~~~---~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~---~~~~~~~~~f~~~D 81 (147)
+--|..+|+..+|.|+..+|...|-.... .-....+++.-..++.. +..|+++||..+. .++..+..+...|-
T Consensus 321 ~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~Fl~~l~dfd~Al~fy~ 399 (489)
T KOG2643|consen 321 ELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFRFLNNLNDFDIALRFYH 399 (489)
T ss_pred HHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 34589999998999999999888776432 12223456666777644 6789999988755 55677777777777
Q ss_pred CCCCceeHHHHHHHHHH-cCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 032093 82 RGRGYLVPDNVYEALVK-IGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIF 134 (147)
Q Consensus 82 ~~~G~i~~~el~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l~~ 134 (147)
.-++.|+..+|+++... .|..+++..++.+|..+|.|.||.++++||+.++..
T Consensus 400 ~Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~ 453 (489)
T KOG2643|consen 400 MAGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKR 453 (489)
T ss_pred HcCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHHHH
Confidence 56899999999999987 588999989999999999999999999999999875
No 58
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.91 E-value=2.3e-08 Score=73.45 Aligned_cols=135 Identities=18% Similarity=0.302 Sum_probs=98.0
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHcC------C----------CCCCHHHHH-HHHHhhcCCCCCcccHHHHHHH
Q 032093 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFAVG------N----------LDFSLSVVQ-QMIRMYDFDRNGTMSFEEFVEL 66 (147)
Q Consensus 4 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~------~----------~~~~~~~~~-~~~~~~d~~~~~~i~~~ef~~~ 66 (147)
...+.-+|..+|.|++|-|+.+||..+...+ | .....+... ....-+.+++++++++++|..+
T Consensus 232 ~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F 311 (489)
T KOG2643|consen 232 ERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKF 311 (489)
T ss_pred cccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHH
Confidence 3456668999999999999999998887521 1 111111111 2334457899999999999999
Q ss_pred HHHH--HHHHHHcccccC-CCCceeHHHHHHHHHHcC-CCCC--HHHHHHHHHhcCCCCCCcccHHHHHHHHHHhhhhh
Q 032093 67 NKFL--LKVQHAFSDLER-GRGYLVPDNVYEALVKIG-FSLD--SPAFYTVCESFDQNKNGRLRLDDFISLCIFLQSAR 139 (147)
Q Consensus 67 ~~~~--~~~~~~f~~~D~-~~G~i~~~el~~~l~~~~-~~~~--~~~~~~~~~~~~~~~~~~i~~~eF~~~l~~~~~~~ 139 (147)
+..+ +.++..|..+|. .+|.|+..+|..+|-... .+.. ......+-+.++.. +..||++||..+...+..+-
T Consensus 312 ~e~Lq~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~Fl~~l~ 389 (489)
T KOG2643|consen 312 QENLQEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFRFLNNLN 389 (489)
T ss_pred HHHHHHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHHHHhhhh
Confidence 9876 578999999994 679999999999997753 2221 22466667777544 55699999999888766544
No 59
>PLN02964 phosphatidylserine decarboxylase
Probab=98.90 E-value=1.6e-08 Score=78.73 Aligned_cols=115 Identities=9% Similarity=0.083 Sum_probs=87.9
Q ss_pred CcccHHHHHHHHHc--CCC-CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH-----HH--HHHHHccccc-CCCCcee
Q 032093 20 GSIAAAQLKHAFAV--GNL-DFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF-----LL--KVQHAFSDLE-RGRGYLV 88 (147)
Q Consensus 20 g~i~~~e~~~~l~~--~~~-~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~-----~~--~~~~~f~~~D-~~~G~i~ 88 (147)
..++.+++...... ..+ .-..+++...|..+|++++|.+ +......+.. .+ -+..+|+.+| +++|.|+
T Consensus 119 ~~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dgdG~i-Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~Id 197 (644)
T PLN02964 119 NRLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSSSNKV-VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLS 197 (644)
T ss_pred CCCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCCCCcC-HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEc
Confidence 35566666544332 111 2233567788899999999997 4444443321 11 2789999999 7999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHh
Q 032093 89 PDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFL 135 (147)
Q Consensus 89 ~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l~~~ 135 (147)
.+||..++..++...+++++..+|+.+|.+++|.|+++||..++...
T Consensus 198 fdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 198 FSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 99999999998887889999999999999999999999999998874
No 60
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.89 E-value=7.5e-09 Score=64.20 Aligned_cols=64 Identities=20% Similarity=0.214 Sum_probs=54.6
Q ss_pred HHHHHHHHHccccc-CCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHh
Q 032093 68 KFLLKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFL 135 (147)
Q Consensus 68 ~~~~~~~~~f~~~D-~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l~~~ 135 (147)
.....+.-+|..+| +++|.|+.+|+..+. + ......+..++..+|.|++|.||++||..++...
T Consensus 45 ~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l--~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~~~ 109 (116)
T cd00252 45 MCKDPVGWMFNQLDGNYDGKLSHHELAPIR--L--DPNEHCIKPFFESCDLDKDGSISLDEWCYCFIKE 109 (116)
T ss_pred HHHHHHHHHHHHHCCCCCCcCCHHHHHHHH--c--cchHHHHHHHHHHHCCCCCCCCCHHHHHHHHhCh
Confidence 34578999999999 899999999999887 2 2345678999999999999999999999999443
No 61
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.88 E-value=1.5e-08 Score=60.07 Aligned_cols=67 Identities=15% Similarity=0.234 Sum_probs=56.8
Q ss_pred HHHHHHHHhhhCCC--CCCcccHHHHHHHHH-cCCCCCC----HHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q 032093 4 TAVLREWFDRVDSE--KTGSIAAAQLKHAFA-VGNLDFS----LSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (147)
Q Consensus 4 ~~~~~~~F~~~D~~--~~g~i~~~e~~~~l~-~~~~~~~----~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (147)
...+..+|+.|+.. ++|.|+..||+.++. .+|..++ +.+++.++..+|.+++|.|+|++|+.++..+
T Consensus 7 i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 7 IETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 34677889999865 479999999999997 5555565 8999999999999999999999999987643
No 62
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.74 E-value=2.4e-07 Score=68.64 Aligned_cols=117 Identities=18% Similarity=0.305 Sum_probs=92.7
Q ss_pred HhhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHH----hhcCCCCCcccHHHHHHHHHHH------HHHHHHcccc
Q 032093 11 FDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIR----MYDFDRNGTMSFEEFVELNKFL------LKVQHAFSDL 80 (147)
Q Consensus 11 F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~----~~d~~~~~~i~~~ef~~~~~~~------~~~~~~f~~~ 80 (147)
|-.+|+|++|.|+.+++...-.. .++...++++|. ..-...+|+++|++|+.++-.+ ..++.-|+.+
T Consensus 284 FweLD~Dhd~lidk~~L~ry~d~---tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrcl 360 (493)
T KOG2562|consen 284 FWELDTDHDGLIDKEDLKRYGDH---TLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCL 360 (493)
T ss_pred HhhhccccccccCHHHHHHHhcc---chhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeee
Confidence 77789999999999999876543 456788899998 3334577899999999988665 4699999999
Q ss_pred c-CCCCceeHHHHHHHHHHc-------C-CCCC-HHHHHHHHHhcCCCCCCcccHHHHHH
Q 032093 81 E-RGRGYLVPDNVYEALVKI-------G-FSLD-SPAFYTVCESFDQNKNGRLRLDDFIS 130 (147)
Q Consensus 81 D-~~~G~i~~~el~~~l~~~-------~-~~~~-~~~~~~~~~~~~~~~~~~i~~~eF~~ 130 (147)
| +++|.|+..|++-+.+.. | ..++ .+.+.+++....+-..++|+.++|..
T Consensus 361 Dld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 361 DLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred eccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 9 999999999988777542 3 2233 34577788888777888999999976
No 63
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.73 E-value=9.7e-08 Score=63.58 Aligned_cols=78 Identities=15% Similarity=0.337 Sum_probs=65.8
Q ss_pred HHHHHHHH-HHHHHHHHHccccc-CCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhhh
Q 032093 60 FEEFVELN-KFLLKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQS 137 (147)
Q Consensus 60 ~~ef~~~~-~~~~~~~~~f~~~D-~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l~~~~~ 137 (147)
|.+|..+- +.+.....+|+.|| +.+|+|+..|++.+|.++|.+=|---+..++.+.+.|.+|+||+-+|+-++.....
T Consensus 87 yteF~eFsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaa 166 (244)
T KOG0041|consen 87 YTEFSEFSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAA 166 (244)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhc
Confidence 55555332 34578999999999 79999999999999999998866667999999999999999999999888776543
No 64
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.69 E-value=1.4e-07 Score=60.27 Aligned_cols=67 Identities=21% Similarity=0.338 Sum_probs=61.4
Q ss_pred cHHHHHHHHhhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q 032093 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF 69 (147)
Q Consensus 3 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 69 (147)
+.+.|..+|..+|++++|.|....++.+|...|-.++.++++.+++.+..+..|.++|..|+.++.+
T Consensus 99 pe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~ith 165 (171)
T KOG0031|consen 99 PEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIITH 165 (171)
T ss_pred HHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHHc
Confidence 5677889999999999999999999999999999999999999999999989999999999988763
No 65
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.68 E-value=5.1e-07 Score=66.16 Aligned_cols=119 Identities=14% Similarity=0.218 Sum_probs=93.9
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH------HHHHHHcc
Q 032093 5 AVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL------LKVQHAFS 78 (147)
Q Consensus 5 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~------~~~~~~f~ 78 (147)
+....+|...|.+.+|.++.++|+..+.. .+..+.++|+.+|.+.||.|+..|....++.+ +++...|+
T Consensus 51 ~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~-----~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e 125 (463)
T KOG0036|consen 51 EAAKMLFSAMDANRDGRVDYSEFKRYLDN-----KELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFE 125 (463)
T ss_pred HHHHHHHHhcccCcCCcccHHHHHHHHHH-----hHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHH
Confidence 45567899999999999999999998874 46678889999999999999999988877654 67888999
Q ss_pred ccc-CCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHh------cCCCCCCcccHHHHHHHHH
Q 032093 79 DLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCES------FDQNKNGRLRLDDFISLCI 133 (147)
Q Consensus 79 ~~D-~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~i~~~eF~~~l~ 133 (147)
..| ++++.|+.+|++..+.-. +.++++.+... ++.+++..|+ ++|...-.
T Consensus 126 ~~d~~g~~~I~~~e~rd~~ll~----p~s~i~di~~~W~h~~~idigE~~~iP-dg~s~~e~ 182 (463)
T KOG0036|consen 126 HMDKDGKATIDLEEWRDHLLLY----PESDLEDIYDFWRHVLLIDIGEDAVLP-DGDSKLEN 182 (463)
T ss_pred HhccCCCeeeccHHHHhhhhcC----ChhHHHHHHHhhhhheEEEccccccCC-cchHHHHh
Confidence 999 799999999999988542 25556665333 4667777777 66665443
No 66
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.61 E-value=7.4e-08 Score=44.84 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=21.4
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHc
Q 032093 6 VLREWFDRVDSEKTGSIAAAQLKHAFAV 33 (147)
Q Consensus 6 ~~~~~F~~~D~~~~g~i~~~e~~~~l~~ 33 (147)
+++++|+.+|+|++|.|+.+||..+++.
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 4567788888888888888888877764
No 67
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.61 E-value=6e-07 Score=53.00 Aligned_cols=66 Identities=17% Similarity=0.200 Sum_probs=55.5
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHc-----CCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q 032093 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFAV-----GNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (147)
Q Consensus 4 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (147)
...+..+|..|..+ .+.++..||+.++.. +....++..++.+++.+|.|++|.|+|.||+.++..+
T Consensus 7 i~~lI~~FhkYaG~-~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 7 MEKMMLTFHKFAGE-KNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHHcCC-CCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 34677889999844 579999999999974 2445678899999999999999999999999988755
No 68
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.61 E-value=2.2e-07 Score=61.89 Aligned_cols=67 Identities=22% Similarity=0.288 Sum_probs=61.5
Q ss_pred cHHHHHHHHhhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q 032093 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF 69 (147)
Q Consensus 3 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 69 (147)
+++.+..+|+.||.+.+|+|+..|++..|.++|.+-+.--++.++...|.|.+|.|++.+|+-++..
T Consensus 97 qIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrk 163 (244)
T KOG0041|consen 97 QIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRK 163 (244)
T ss_pred HHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHH
Confidence 3566788999999999999999999999999999988888999999999999999999999987754
No 69
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.58 E-value=2.3e-07 Score=58.34 Aligned_cols=62 Identities=24% Similarity=0.383 Sum_probs=55.6
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 032093 5 AVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELN 67 (147)
Q Consensus 5 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~ 67 (147)
+.+.+..+.+|++++|.|...||+.+|..+|-.++++++..+++... |.+|.|+|+.|+..+
T Consensus 88 edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~e-D~nG~i~YE~fVk~i 149 (152)
T KOG0030|consen 88 EDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQE-DSNGCINYEAFVKHI 149 (152)
T ss_pred HHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHcccc-ccCCcCcHHHHHHHH
Confidence 35667788999999999999999999999999999999999999874 788999999999743
No 70
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.55 E-value=3.9e-07 Score=62.71 Aligned_cols=60 Identities=20% Similarity=0.310 Sum_probs=30.0
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHcC---CCCCCHHHHHHHHHhhcCCCCCcccHHHHHH
Q 032093 6 VLREWFDRVDSEKTGSIAAAQLKHAFAVG---NLDFSLSVVQQMIRMYDFDRNGTMSFEEFVE 65 (147)
Q Consensus 6 ~~~~~F~~~D~~~~g~i~~~e~~~~l~~~---~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~ 65 (147)
.+..+|.+.|.+.+|.||..|+++.+..- .+.-+.++-+..|+..|++++|.|+|+||..
T Consensus 102 klmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykv 164 (362)
T KOG4251|consen 102 KLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKV 164 (362)
T ss_pred HHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhh
Confidence 45556666666666666666665544421 1111122233344455566666666666553
No 71
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.50 E-value=2.2e-07 Score=43.98 Aligned_cols=30 Identities=27% Similarity=0.306 Sum_probs=25.9
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHH-cCC
Q 032093 6 VLREWFDRVDSEKTGSIAAAQLKHAFA-VGN 35 (147)
Q Consensus 6 ~~~~~F~~~D~~~~g~i~~~e~~~~l~-~~~ 35 (147)
+++.+|..+|.+++|.|+.+||..+|+ ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 478899999999999999999999998 565
No 72
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.47 E-value=1.1e-06 Score=65.89 Aligned_cols=130 Identities=15% Similarity=0.242 Sum_probs=87.5
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHcCCC------CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH--HHHHHHHc
Q 032093 6 VLREWFDRVDSEKTGSIAAAQLKHAFAVGNL------DFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF--LLKVQHAF 77 (147)
Q Consensus 6 ~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~------~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~--~~~~~~~f 77 (147)
-...+|+.+|..++|.+|.+++..++....+ ..+.+.++..+. ......++|.+|.+++.. ++..+++|
T Consensus 109 l~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg---~~~~r~~ny~~f~Q~lh~~~~E~~~qaf 185 (694)
T KOG0751|consen 109 LFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFG---DIRKRHLNYAEFTQFLHEFQLEHAEQAF 185 (694)
T ss_pred HHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhh---hHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777777765432 333444444222 233345777777776653 36789999
Q ss_pred cccc-CCCCceeHHHHHHHHHHcCCCC-CHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhhhh
Q 032093 78 SDLE-RGRGYLVPDNVYEALVKIGFSL-DSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQSA 138 (147)
Q Consensus 78 ~~~D-~~~G~i~~~el~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~eF~~~l~~~~~~ 138 (147)
+..| .++|.|+.-+++.++.....++ ++..-+.+....+.+...++|+..|..+-..+..+
T Consensus 186 r~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv~vagg~~~H~vSf~yf~afnslL~~m 248 (694)
T KOG0751|consen 186 REKDKAKNGFISVLDFQDIMVTIRIHLLTPFVEENLVSVAGGNDSHQVSFSYFNAFNSLLNNM 248 (694)
T ss_pred HHhcccCCCeeeeechHhhhhhhhhhcCCHHHhhhhhhhcCCCCccccchHHHHHHHHHHhhH
Confidence 9999 6999999999999998876554 45444555556666677789988887666555543
No 73
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.45 E-value=3.3e-06 Score=66.19 Aligned_cols=130 Identities=22% Similarity=0.325 Sum_probs=112.4
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH---HHHHHHccccc
Q 032093 5 AVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL---LKVQHAFSDLE 81 (147)
Q Consensus 5 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~---~~~~~~f~~~D 81 (147)
.-+..+|...|++++|.++..+...++..++..++...+.++++..+..+++.+...+|..+...+ ..+...|..+-
T Consensus 136 ~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rpev~~~f~~~s 215 (746)
T KOG0169|consen 136 HWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRPEVYFLFVQYS 215 (746)
T ss_pred HHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCchHHHHHHHHh
Confidence 456788999999999999999999999999999999999999999999999999999999977654 36778887777
Q ss_pred CCCCceeHHHHHHHHHHcC--CCCCHHHHHHHHHhcCCCC----CCcccHHHHHHHHHH
Q 032093 82 RGRGYLVPDNVYEALVKIG--FSLDSPAFYTVCESFDQNK----NGRLRLDDFISLCIF 134 (147)
Q Consensus 82 ~~~G~i~~~el~~~l~~~~--~~~~~~~~~~~~~~~~~~~----~~~i~~~eF~~~l~~ 134 (147)
.+.++++.+++.+++...+ .+.+.+.++.+++.+...+ .+.++.+.|.++|..
T Consensus 216 ~~~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S 274 (746)
T KOG0169|consen 216 HGKEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFS 274 (746)
T ss_pred CCCCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcC
Confidence 5699999999999998864 3588899999999986543 445999999999874
No 74
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.45 E-value=1.4e-06 Score=45.56 Aligned_cols=50 Identities=22% Similarity=0.331 Sum_probs=41.5
Q ss_pred cccHHHHHHHHHcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q 032093 21 SIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (147)
Q Consensus 21 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (147)
.++..|++.+|+.+++.++++.+..+|+.+|.+++|.+.-+||..+++.+
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 37889999999999999999999999999999999999999999988653
No 75
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.44 E-value=3.5e-06 Score=51.27 Aligned_cols=67 Identities=22% Similarity=0.437 Sum_probs=56.8
Q ss_pred cHHHHHHHHhhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHH
Q 032093 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFLLK 72 (147)
Q Consensus 3 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~ 72 (147)
+...+.++|...++ ++|.|+..+...++...+ ++.+.+.+||...|.+++|+++++||+..+.....
T Consensus 8 e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~~ 74 (104)
T PF12763_consen 8 EKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLINR 74 (104)
T ss_dssp HHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHHH
Confidence 56788999999986 579999999999998765 55799999999999999999999999987765533
No 76
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.43 E-value=3.3e-07 Score=42.64 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=9.1
Q ss_pred HHccccc-CCCCceeHHHHHHHH
Q 032093 75 HAFSDLE-RGRGYLVPDNVYEAL 96 (147)
Q Consensus 75 ~~f~~~D-~~~G~i~~~el~~~l 96 (147)
.+|+.+| +++|+|+.+||..+|
T Consensus 4 ~~F~~~D~d~dG~I~~~Ef~~~~ 26 (29)
T PF00036_consen 4 EAFREFDKDGDGKIDFEEFKEMM 26 (29)
T ss_dssp HHHHHHSTTSSSEEEHHHHHHHH
T ss_pred HHHHHHCCCCCCcCCHHHHHHHH
Confidence 3444444 344444444444443
No 77
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.41 E-value=3e-06 Score=51.55 Aligned_cols=67 Identities=19% Similarity=0.337 Sum_probs=58.0
Q ss_pred HHHHHHHcccccCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhhhh
Q 032093 70 LLKVQHAFSDLERGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQSA 138 (147)
Q Consensus 70 ~~~~~~~f~~~D~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l~~~~~~ 138 (147)
......+|...++++|.|+.++.+.++..-| ++.+.+..++...|.+.+|.++.+||+-.+..+...
T Consensus 9 ~~~y~~~F~~l~~~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~~~ 75 (104)
T PF12763_consen 9 KQKYDQIFQSLDPQDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLINRK 75 (104)
T ss_dssp HHHHHHHHHCTSSSTTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHHHH
Confidence 3567889998887789999999999998876 668999999999999999999999999988877543
No 78
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.40 E-value=9.7e-07 Score=65.40 Aligned_cols=67 Identities=22% Similarity=0.464 Sum_probs=54.0
Q ss_pred ccHHHHHHHHhhhCCCCCCcccHHHHHHHHHcC----CCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 032093 2 ENTAVLREWFDRVDSEKTGSIAAAQLKHAFAVG----NLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNK 68 (147)
Q Consensus 2 ~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~----~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 68 (147)
+++..+..+|+.+|.|++|.||.+||..+.+.+ +..+++.++..+.+.+|.|++|.|++.||+..+.
T Consensus 544 r~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 544 RNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFR 614 (631)
T ss_pred hchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Confidence 355677888888888888888888888888755 4467888888888888888888888888887554
No 79
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.35 E-value=6.6e-07 Score=42.32 Aligned_cols=29 Identities=21% Similarity=0.526 Sum_probs=23.0
Q ss_pred HHHHHccccc-CCCCceeHHHHHHHHH-HcC
Q 032093 72 KVQHAFSDLE-RGRGYLVPDNVYEALV-KIG 100 (147)
Q Consensus 72 ~~~~~f~~~D-~~~G~i~~~el~~~l~-~~~ 100 (147)
+++.+|+.+| +++|+|+.+||..+|+ ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 3678889999 7899999999999988 554
No 80
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.21 E-value=4.2e-05 Score=60.42 Aligned_cols=125 Identities=26% Similarity=0.423 Sum_probs=101.9
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH------------------
Q 032093 9 EWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL------------------ 70 (147)
Q Consensus 9 ~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~------------------ 70 (147)
+.|..+ +.+.|+|+..+-+.++-..|+ +...+.+||...|.|.||+++..||.-.|+.+
T Consensus 20 ~qF~~L-kp~~gfitg~qArnfflqS~L--P~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~lkLqG~~lP~~LPPsll 96 (1118)
T KOG1029|consen 20 AQFGQL-KPGQGFITGDQARNFFLQSGL--PTPVLAQIWALSDLDKDGRMDIREFSIAMKLIKLKLQGIQLPPVLPPSLL 96 (1118)
T ss_pred HHHhcc-CCCCCccchHhhhhhHHhcCC--ChHHHHHHHHhhhcCccccchHHHHHHHHHHHHHHhcCCcCCCCCChHHh
Confidence 345544 456799999999888876555 45778899999999999999999998766421
Q ss_pred --------------------------------------------------------------------------------
Q 032093 71 -------------------------------------------------------------------------------- 70 (147)
Q Consensus 71 -------------------------------------------------------------------------------- 70 (147)
T Consensus 97 ~~~~~~~p~~~p~fg~Gsls~~qpL~~a~p~~m~~s~v~~~Pv~vatvpS~~~~sl~nGplp~~~~spl~~~ss~se~~~ 176 (1118)
T KOG1029|consen 97 KQPPRNAPSTWPGFGMGSLSYSQPLPPAAPRRMSSSPVVGPPVSVATVPSSRHNSLPNGPLPPTSNSPLPHDSSVSEGRP 176 (1118)
T ss_pred ccCCcCCCCCCCccCCCCcCcCCCCCcccccccCCCccCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCcchhhcCc
Confidence
Q ss_pred ------------------HHHHHHccccc-CCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHH
Q 032093 71 ------------------LKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISL 131 (147)
Q Consensus 71 ------------------~~~~~~f~~~D-~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eF~~~ 131 (147)
.+.+.+|..+| ..+|+++...-+.+|..-+ ++...+..++...|.|+||+++-+||+-.
T Consensus 177 ~~~s~~q~~eWAVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DGkL~~dEfila 254 (1118)
T KOG1029|consen 177 SIESVNQLEEWAVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDGKLSADEFILA 254 (1118)
T ss_pred cchhhhhhhhccccchhhhHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCCcccHHHHHHH
Confidence 35789999999 5999999999999997655 56778999999999999999999999988
Q ss_pred HHHhhhh
Q 032093 132 CIFLQSA 138 (147)
Q Consensus 132 l~~~~~~ 138 (147)
+......
T Consensus 255 m~liema 261 (1118)
T KOG1029|consen 255 MHLIEMA 261 (1118)
T ss_pred HHHHHHH
Confidence 7765543
No 81
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=98.16 E-value=1.1e-06 Score=62.72 Aligned_cols=102 Identities=14% Similarity=0.169 Sum_probs=84.1
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHH-------HHHHHHHccccc-CCCCceeHHHHHHHHHH-cCCCCCHHHHHHH
Q 032093 41 SVVQQMIRMYDFDRNGTMSFEEFVELNKF-------LLKVQHAFSDLE-RGRGYLVPDNVYEALVK-IGFSLDSPAFYTV 111 (147)
Q Consensus 41 ~~~~~~~~~~d~~~~~~i~~~ef~~~~~~-------~~~~~~~f~~~D-~~~G~i~~~el~~~l~~-~~~~~~~~~~~~~ 111 (147)
..+..++..+|.+++|.++|.+.+.-.+. ...++.+|+.|+ +.+|++...+|..+|.. +| +..-.+..+
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lg--v~~l~v~~l 336 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLG--VEVLRVPVL 336 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcC--cceeecccc
Confidence 55778999999999999999998876543 478999999999 89999999999999876 34 333456778
Q ss_pred HHhcCCCCCCcccHHHHHHHHHHhhhhhhcccc
Q 032093 112 CESFDQNKNGRLRLDDFISLCIFLQSARYESLK 144 (147)
Q Consensus 112 ~~~~~~~~~~~i~~~eF~~~l~~~~~~~~~~~~ 144 (147)
+...+..++|+|+|.+|.++....+.....+..
T Consensus 337 f~~i~q~d~~ki~~~~f~~fa~~~p~~a~~~~~ 369 (412)
T KOG4666|consen 337 FPSIEQKDDPKIYASNFRKFAATEPNLALSELG 369 (412)
T ss_pred chhhhcccCcceeHHHHHHHHHhCchhhhhhhc
Confidence 889999999999999999999988876644443
No 82
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.16 E-value=3.6e-06 Score=37.69 Aligned_cols=25 Identities=20% Similarity=0.498 Sum_probs=19.6
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHH
Q 032093 7 LREWFDRVDSEKTGSIAAAQLKHAF 31 (147)
Q Consensus 7 ~~~~F~~~D~~~~g~i~~~e~~~~l 31 (147)
++.+|..+|.|++|.|+.+||.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4567888888888888888887753
No 83
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.09 E-value=2.9e-05 Score=40.61 Aligned_cols=50 Identities=18% Similarity=0.254 Sum_probs=41.1
Q ss_pred ceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHh
Q 032093 86 YLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFL 135 (147)
Q Consensus 86 ~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l~~~ 135 (147)
.++..|++.+|+.+++.+++.-+..+|+.+|..++|.+.-+||..++..+
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 36889999999999999999999999999999999999999999887654
No 84
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.03 E-value=0.00014 Score=54.98 Aligned_cols=98 Identities=17% Similarity=0.284 Sum_probs=71.6
Q ss_pred cHHHHHHHHhhh---CCCCCCcccHHHHHHHHH-cCCCC-CCHHHHHHHHHhhcCCCCCcccHHHHHHHHH----HHHHH
Q 032093 3 NTAVLREWFDRV---DSEKTGSIAAAQLKHAFA-VGNLD-FSLSVVQQMIRMYDFDRNGTMSFEEFVELNK----FLLKV 73 (147)
Q Consensus 3 ~~~~~~~~F~~~---D~~~~g~i~~~e~~~~l~-~~~~~-~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~----~~~~~ 73 (147)
..++++.+|..+ +.++...++.++|....- ..+.. .+++..+.+-...|...+|-|+|+||+.+-. +--..
T Consensus 31 ~~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC~pDal~ 110 (694)
T KOG0751|consen 31 DPKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLCAPDALF 110 (694)
T ss_pred ChHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhccCchHHH
Confidence 345677777655 567788899999865544 33443 4444444444555778889999999998543 33567
Q ss_pred HHHccccc-CCCCceeHHHHHHHHHHcC
Q 032093 74 QHAFSDLE-RGRGYLVPDNVYEALVKIG 100 (147)
Q Consensus 74 ~~~f~~~D-~~~G~i~~~el~~~l~~~~ 100 (147)
..+|+.+| .++|.+|.+++..++....
T Consensus 111 ~~aFqlFDr~~~~~vs~~~~~~if~~t~ 138 (694)
T KOG0751|consen 111 EVAFQLFDRLGNGEVSFEDVADIFGQTN 138 (694)
T ss_pred HHHHHHhcccCCCceehHHHHHHHhccc
Confidence 88999999 5999999999999998764
No 85
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.03 E-value=2.1e-05 Score=58.58 Aligned_cols=57 Identities=23% Similarity=0.445 Sum_probs=43.5
Q ss_pred CCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHHccccc-CCCCceeHHHHHHHHHH
Q 032093 35 NLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFLLKVQHAFSDLE-RGRGYLVPDNVYEALVK 98 (147)
Q Consensus 35 ~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~f~~~D-~~~G~i~~~el~~~l~~ 98 (147)
|.......+..+++.+|.+++|.|+.+||.. ...+|..+| +++|.|+.+||.+++..
T Consensus 328 ~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~-------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 328 GGEAFTHAAQEIFRLYDLDGDGFITREEWLG-------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred ccChhhHHHHHHHHHhCCCCCCcCcHHHHHH-------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 5566677778888888888888888888854 356788888 68888888888887754
No 86
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=97.98 E-value=4.4e-05 Score=48.69 Aligned_cols=90 Identities=13% Similarity=0.231 Sum_probs=69.4
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHHcCCC-CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH-----------HHHHHH
Q 032093 9 EWFDRVDSEKTGSIAAAQLKHAFAVGNL-DFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL-----------LKVQHA 76 (147)
Q Consensus 9 ~~F~~~D~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~-----------~~~~~~ 76 (147)
++-..+..||.|.+|.++|..++.-++- .+-+-.+.-.++.||-++++.|--.+....+..+ ....++
T Consensus 75 ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekv 154 (189)
T KOG0038|consen 75 RICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKV 154 (189)
T ss_pred HHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 4556677899999999999999886544 3333445667888999999999888877766543 245666
Q ss_pred ccccc-CCCCceeHHHHHHHHHH
Q 032093 77 FSDLE-RGRGYLVPDNVYEALVK 98 (147)
Q Consensus 77 f~~~D-~~~G~i~~~el~~~l~~ 98 (147)
....| +|+|+|+..+|..+...
T Consensus 155 ieEAD~DgDgkl~~~eFe~~i~r 177 (189)
T KOG0038|consen 155 IEEADLDGDGKLSFAEFEHVILR 177 (189)
T ss_pred HHHhcCCCCCcccHHHHHHHHHh
Confidence 77778 89999999999998865
No 87
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.93 E-value=1.1e-05 Score=36.04 Aligned_cols=20 Identities=20% Similarity=0.443 Sum_probs=9.7
Q ss_pred HHccccc-CCCCceeHHHHHH
Q 032093 75 HAFSDLE-RGRGYLVPDNVYE 94 (147)
Q Consensus 75 ~~f~~~D-~~~G~i~~~el~~ 94 (147)
.+|+.+| +++|.|+.+|+.+
T Consensus 3 ~~F~~~D~d~DG~is~~E~~~ 23 (25)
T PF13202_consen 3 DAFQQFDTDGDGKISFEEFQR 23 (25)
T ss_dssp HHHHHHTTTSSSEEEHHHHHH
T ss_pred HHHHHHcCCCCCcCCHHHHHH
Confidence 3444455 4555555555444
No 88
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=97.93 E-value=0.00019 Score=53.69 Aligned_cols=57 Identities=14% Similarity=0.267 Sum_probs=38.6
Q ss_pred ccccc-CCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhc----CCCCCCcccHHHHHHHHHHhh
Q 032093 77 FSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESF----DQNKNGRLRLDDFISLCIFLQ 136 (147)
Q Consensus 77 f~~~D-~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~eF~~~l~~~~ 136 (147)
|-.+| +.+|.|+++++...-.. .++..-++.+|.+. -.-.+|+++|++|+-++....
T Consensus 284 FweLD~Dhd~lidk~~L~ry~d~---tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e 345 (493)
T KOG2562|consen 284 FWELDTDHDGLIDKEDLKRYGDH---TLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEE 345 (493)
T ss_pred HhhhccccccccCHHHHHHHhcc---chhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhc
Confidence 55557 57788887777665533 24555677777732 235688899999988887654
No 89
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.85 E-value=6.5e-05 Score=56.00 Aligned_cols=97 Identities=13% Similarity=0.196 Sum_probs=70.3
Q ss_pred cccHHHHHHHHHcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHH-HH-------HHHHHHHHccccc-CCCCceeHHH
Q 032093 21 SIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVEL-NK-------FLLKVQHAFSDLE-RGRGYLVPDN 91 (147)
Q Consensus 21 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~-~~-------~~~~~~~~f~~~D-~~~G~i~~~e 91 (147)
.++..+|+-.+.. -.+..+.+..=++.+..+ ...++.++.- +. ....++.+|+.+| +++|.|+.+|
T Consensus 281 ~~~e~~f~~~~~~--~~ma~ekl~egi~~F~~d---~~~L~~~i~~~~~~~~~~~~~~~~l~~aF~~~D~dgdG~Is~~E 355 (391)
T PRK12309 281 HMDRATFDKMHAE--DRMASEKLDEGIKGFSKA---LETLEKLLAHRLARLEGGEAFTHAAQEIFRLYDLDGDGFITREE 355 (391)
T ss_pred CCCHHHHHHHhcc--CchHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhccChhhHHHHHHHHHhCCCCCCcCcHHH
Confidence 3577778876652 345556666666665432 3455666541 22 2357899999999 7999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHh
Q 032093 92 VYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFL 135 (147)
Q Consensus 92 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l~~~ 135 (147)
|.. ++.+|..+|.|++|.|+++||...+.-.
T Consensus 356 ~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 356 WLG-------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred HHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 842 4778999999999999999999988643
No 90
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.80 E-value=1.5e-05 Score=49.33 Aligned_cols=59 Identities=20% Similarity=0.294 Sum_probs=39.6
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHH
Q 032093 5 AVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVE 65 (147)
Q Consensus 5 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~ 65 (147)
..+.-.|..+|.+++|.|+..|+..+...+ ...+.=++.++..+|.|+++.|++.|+..
T Consensus 54 ~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 54 RVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 344556888899999999998888776644 34444567888888888999999888865
No 91
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.70 E-value=0.00021 Score=54.30 Aligned_cols=68 Identities=18% Similarity=0.417 Sum_probs=58.9
Q ss_pred HHHHHHHcccccCCCCceeHHHHHHHHHHcCCC---CCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhhh
Q 032093 70 LLKVQHAFSDLERGRGYLVPDNVYEALVKIGFS---LDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQS 137 (147)
Q Consensus 70 ~~~~~~~f~~~D~~~G~i~~~el~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l~~~~~ 137 (147)
+..+...|...|+++|+++..++..++.+.+.. ...++++.++...+.|.+|+|++++|+..+.-+.+
T Consensus 18 l~~l~~kF~~~d~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~s 88 (627)
T KOG0046|consen 18 LRELKEKFNKLDDQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLKS 88 (627)
T ss_pred HHHHHHHHHhhcCCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhhh
Confidence 467888899999999999999999999987654 45789999999999999999999999997766553
No 92
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.67 E-value=0.00014 Score=61.23 Aligned_cols=66 Identities=21% Similarity=0.452 Sum_probs=58.5
Q ss_pred HHHHHHccccc-CCCCceeHHHHHHHHHHcCCCCC-------HHHHHHHHHhcCCCCCCcccHHHHHHHHHHhh
Q 032093 71 LKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLD-------SPAFYTVCESFDQNKNGRLRLDDFISLCIFLQ 136 (147)
Q Consensus 71 ~~~~~~f~~~D-~~~G~i~~~el~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~i~~~eF~~~l~~~~ 136 (147)
.....+|+.|| +++|.++..+|+..|+.+|+.++ +..++.++...|++.+|+|+..+|+.+|....
T Consensus 2253 ~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~E 2326 (2399)
T KOG0040|consen 2253 KEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKE 2326 (2399)
T ss_pred HHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcc
Confidence 57889999999 69999999999999999998652 23799999999999999999999999987643
No 93
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.64 E-value=0.00021 Score=54.32 Aligned_cols=65 Identities=26% Similarity=0.493 Sum_probs=57.4
Q ss_pred cHHHHHHHHhhhCCCCCCcccHHHHHHHHHcCCCC---CCHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 032093 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLD---FSLSVVQQMIRMYDFDRNGTMSFEEFVELNK 68 (147)
Q Consensus 3 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~---~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 68 (147)
+..+++..|...| +++|+++..++..++...+.. ...++++.++...+.+.+|.|+|++|+.++-
T Consensus 17 El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~ 84 (627)
T KOG0046|consen 17 ELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFL 84 (627)
T ss_pred HHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHH
Confidence 4567889999999 999999999999999988664 3578899999999999999999999999654
No 94
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.49 E-value=0.0012 Score=51.19 Aligned_cols=128 Identities=20% Similarity=0.251 Sum_probs=86.3
Q ss_pred cHHHHHHHHhhhCCCCCCcccHHHHHHHHHcC-CCCCCHHHHHHHHHhhcCC-----CCCcccHHHHHHHHHH-------
Q 032093 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVG-NLDFSLSVVQQMIRMYDFD-----RNGTMSFEEFVELNKF------- 69 (147)
Q Consensus 3 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~-----~~~~i~~~ef~~~~~~------- 69 (147)
....+.++|...|.|.+|.++-.|+...-... +-+++..++..+....+.. .+..+++.-|+.+...
T Consensus 193 ~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~lfiergr~ 272 (625)
T KOG1707|consen 193 CVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTLFIERGRH 272 (625)
T ss_pred HHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHHHHHhccc
Confidence 45678999999999999999999998776653 5577777766555544322 2234555556554321
Q ss_pred -----------------------------------------HHHHHHHccccc-CCCCceeHHHHHHHHHHcCCCC--CH
Q 032093 70 -----------------------------------------LLKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSL--DS 105 (147)
Q Consensus 70 -----------------------------------------~~~~~~~f~~~D-~~~G~i~~~el~~~l~~~~~~~--~~ 105 (147)
.+-+..+|..|| +++|-++..|+..++...+... ..
T Consensus 273 EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~ 352 (625)
T KOG1707|consen 273 ETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSS 352 (625)
T ss_pred cchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCC
Confidence 145899999999 8999999999999998875432 00
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 032093 106 PAFYTVCESFDQNKNGRLRLDDFISLCIF 134 (147)
Q Consensus 106 ~~~~~~~~~~~~~~~~~i~~~eF~~~l~~ 134 (147)
.+.+ ....+..|.++|..|+..=..
T Consensus 353 ~~~~----~t~~~~~G~ltl~g~l~~WsL 377 (625)
T KOG1707|consen 353 PYKD----STVKNERGWLTLNGFLSQWSL 377 (625)
T ss_pred cccc----cceecccceeehhhHHHHHHH
Confidence 0000 111247788888888765443
No 95
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.45 E-value=0.00038 Score=40.54 Aligned_cols=62 Identities=18% Similarity=0.372 Sum_probs=51.1
Q ss_pred HHHHcccccCCCCceeHHHHHHHHHHc-CC-CCCHHHHHHHHHhcCCC----CCCcccHHHHHHHHHH
Q 032093 73 VQHAFSDLERGRGYLVPDNVYEALVKI-GF-SLDSPAFYTVCESFDQN----KNGRLRLDDFISLCIF 134 (147)
Q Consensus 73 ~~~~f~~~D~~~G~i~~~el~~~l~~~-~~-~~~~~~~~~~~~~~~~~----~~~~i~~~eF~~~l~~ 134 (147)
+..+|..|..+.+.++.++|...|... +. ..+.+.+..++..+..+ ..+.+++++|..+|.-
T Consensus 2 i~~if~~ys~~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 2 IEEIFRKYSSDKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHCTTSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 667888887678999999999999875 33 47899999999998654 4789999999999864
No 96
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=0.00039 Score=42.58 Aligned_cols=63 Identities=17% Similarity=0.195 Sum_probs=45.3
Q ss_pred HHHHHHHHccccc-CCCCceeHHHHHHHHHHc------CC---C-CCHHHHH----HHHHhcCCCCCCcccHHHHHHH
Q 032093 69 FLLKVQHAFSDLE-RGRGYLVPDNVYEALVKI------GF---S-LDSPAFY----TVCESFDQNKNGRLRLDDFISL 131 (147)
Q Consensus 69 ~~~~~~~~f~~~D-~~~G~i~~~el~~~l~~~------~~---~-~~~~~~~----~~~~~~~~~~~~~i~~~eF~~~ 131 (147)
..+.-..-|+++| +++|.|+--|+.+++.-+ |. + .++.++. .+++.-|.|.||.|+|-||++-
T Consensus 65 peqlqfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 65 PEQLQFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred HHHHhhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 3344455678889 899999999998888643 32 2 3445544 4455668899999999999874
No 97
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.34 E-value=0.00033 Score=31.27 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=20.0
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHHc
Q 032093 7 LREWFDRVDSEKTGSIAAAQLKHAFAV 33 (147)
Q Consensus 7 ~~~~F~~~D~~~~g~i~~~e~~~~l~~ 33 (147)
++.+|..+|.+++|.|+..+|..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 456777778877788888887777654
No 98
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.29 E-value=9.2e-05 Score=45.81 Aligned_cols=60 Identities=20% Similarity=0.235 Sum_probs=43.7
Q ss_pred HHHHHHHccccc-CCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHH
Q 032093 70 LLKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISL 131 (147)
Q Consensus 70 ~~~~~~~f~~~D-~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eF~~~ 131 (147)
...+.-.|..+| +++|.|+..|+..+...+. ....=+..++...|.|+|+.||..||..+
T Consensus 53 ~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~--~~e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 53 KRVVHWKFCQLDRNKDGVLDRSELKPLRRPLM--PPEHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp HHHHHHHHHHH--T-SSEE-TTTTGGGGSTTS--TTGGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hhhhhhhHhhhcCCCCCccCHHHHHHHHHHHh--hhHHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 357788899999 8999999999888876542 22334788999999999999999999763
No 99
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.23 E-value=0.0015 Score=37.92 Aligned_cols=61 Identities=15% Similarity=0.322 Sum_probs=46.0
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHcC-CC-CCCHHHHHHHHHhhcCC----CCCcccHHHHHHHH
Q 032093 6 VLREWFDRVDSEKTGSIAAAQLKHAFAVG-NL-DFSLSVVQQMIRMYDFD----RNGTMSFEEFVELN 67 (147)
Q Consensus 6 ~~~~~F~~~D~~~~g~i~~~e~~~~l~~~-~~-~~~~~~~~~~~~~~d~~----~~~~i~~~ef~~~~ 67 (147)
++..+|..+.. +.+.||.++|...|..- +. ..+...+..++..+.++ ..+.++++.|..++
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL 67 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFL 67 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHH
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHH
Confidence 46789999955 78999999999999765 33 46788888888887544 35677777777765
No 100
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=97.05 E-value=0.01 Score=39.20 Aligned_cols=128 Identities=17% Similarity=0.133 Sum_probs=81.6
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHhhcCC---CCCcccHHHHHHHHH------------
Q 032093 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFD---RNGTMSFEEFVELNK------------ 68 (147)
Q Consensus 4 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~---~~~~i~~~ef~~~~~------------ 68 (147)
...+++-..-+|.|++|.|..-|--+.++++|..+--..+-.++-..... ..+.+.-.-|.-.+.
T Consensus 6 ~T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg 85 (174)
T PF05042_consen 6 MTVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSG 85 (174)
T ss_pred ccHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCcc
Confidence 34577778889999999999999999999999976555544333322111 111111110111111
Q ss_pred --------HHHHHHHHccccc-CCCCceeHHHHHHHHHHcCCCC-------CHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 032093 69 --------FLLKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSL-------DSPAFYTVCESFDQNKNGRLRLDDFISLC 132 (147)
Q Consensus 69 --------~~~~~~~~f~~~D-~~~G~i~~~el~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~i~~~eF~~~l 132 (147)
..++.+.+|.+|+ .+.+.++..|+.++++...... +.-|-..+...+ .+++|.+..++-..+.
T Consensus 86 ~YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 86 AYDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGVY 164 (174)
T ss_pred ccccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhhc
Confidence 0278999999999 5789999999999998743222 222333333333 5788999888765543
No 101
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=96.97 E-value=0.0045 Score=44.76 Aligned_cols=96 Identities=15% Similarity=0.140 Sum_probs=78.8
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHcC-CCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH-----HHHHHHcc
Q 032093 5 AVLREWFDRVDSEKTGSIAAAQLKHAFAVG-NLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL-----LKVQHAFS 78 (147)
Q Consensus 5 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~-----~~~~~~f~ 78 (147)
..+...|..||..++|.++..+--..+.-+ |-......++-.+++++...||.+.-++|.-++... -.+--.|.
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv~~l~v~~lf~ 338 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGVEVLRVPVLFP 338 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCcceeeccccch
Confidence 456789999999999999988876666655 557788889999999999999999998888777643 24667788
Q ss_pred ccc-CCCCceeHHHHHHHHHHcC
Q 032093 79 DLE-RGRGYLVPDNVYEALVKIG 100 (147)
Q Consensus 79 ~~D-~~~G~i~~~el~~~l~~~~ 100 (147)
..+ ..+|+|+.++|+++....+
T Consensus 339 ~i~q~d~~ki~~~~f~~fa~~~p 361 (412)
T KOG4666|consen 339 SIEQKDDPKIYASNFRKFAATEP 361 (412)
T ss_pred hhhcccCcceeHHHHHHHHHhCc
Confidence 888 5889999999999986643
No 102
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.93 E-value=0.0081 Score=36.93 Aligned_cols=63 Identities=19% Similarity=0.301 Sum_probs=43.9
Q ss_pred cHHHHHHHHhhhCCCCCCcccHHHHHHHHHcC------CC----CCCHHHHHHHHH----hhcCCCCCcccHHHHHH
Q 032093 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVG------NL----DFSLSVVQQMIR----MYDFDRNGTMSFEEFVE 65 (147)
Q Consensus 3 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~------~~----~~~~~~~~~~~~----~~d~~~~~~i~~~ef~~ 65 (147)
+..---..|+..|-|++|.++--|+..++.-. |. -+++.++.+++. .-|.|++|.|+|.||..
T Consensus 65 peqlqfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK 141 (144)
T KOG4065|consen 65 PEQLQFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLK 141 (144)
T ss_pred HHHHhhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHh
Confidence 33334456888899999999999998888732 22 244555555444 44778889999988875
No 103
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=96.80 E-value=0.011 Score=41.32 Aligned_cols=59 Identities=12% Similarity=0.139 Sum_probs=46.8
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHH---------HHHHHHHccccc-CCCCceeHHHHHHHHHH
Q 032093 40 LSVVQQMIRMYDFDRNGTMSFEEFVELNKF---------LLKVQHAFSDLE-RGRGYLVPDNVYEALVK 98 (147)
Q Consensus 40 ~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~---------~~~~~~~f~~~D-~~~G~i~~~el~~~l~~ 98 (147)
.+.+..+|...|.+.++.|+-.|....+.. .+.-+.-|+..| +++|.|+.+|++--+.+
T Consensus 100 rrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFla 168 (362)
T KOG4251|consen 100 RRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLA 168 (362)
T ss_pred HHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHh
Confidence 455778999999999999999988875432 245677889999 79999999998766644
No 104
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.73 E-value=0.0025 Score=28.16 Aligned_cols=23 Identities=22% Similarity=0.596 Sum_probs=10.7
Q ss_pred HHHHhcCCCCCCcccHHHHHHHH
Q 032093 110 TVCESFDQNKNGRLRLDDFISLC 132 (147)
Q Consensus 110 ~~~~~~~~~~~~~i~~~eF~~~l 132 (147)
.++..++.+.+|.|++.+|..++
T Consensus 4 ~~f~~~d~~~~g~i~~~e~~~~~ 26 (29)
T smart00054 4 EAFRLFDKDGDGKIDFEEFKDLL 26 (29)
T ss_pred HHHHHHCCCCCCcEeHHHHHHHH
Confidence 34444444444444444444443
No 105
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=96.69 E-value=0.016 Score=37.91 Aligned_cols=67 Identities=10% Similarity=0.179 Sum_probs=51.0
Q ss_pred HHHcccc----cCCCCceeHHHHHHHHHHcCC---CCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhhhhhh
Q 032093 74 QHAFSDL----ERGRGYLVPDNVYEALVKIGF---SLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQSARY 140 (147)
Q Consensus 74 ~~~f~~~----D~~~G~i~~~el~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l~~~~~~~~ 140 (147)
+.+|..| ..+...++...|..+|+..++ .++..+++.+|..+-......|+|++|..+|..+.....
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA~~~~ 75 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELAEKKG 75 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHhh
Confidence 4455555 346788999999999999764 589999999999975555567999999999988776543
No 106
>PLN02952 phosphoinositide phospholipase C
Probab=96.31 E-value=0.034 Score=43.94 Aligned_cols=81 Identities=20% Similarity=0.296 Sum_probs=57.7
Q ss_pred CCCcccHHHHHHHHHHH--------HHHHHHcccccCCCCceeHHHHHHHHHHcC-C-CCCHHHHHHHHHhcCC------
Q 032093 54 RNGTMSFEEFVELNKFL--------LKVQHAFSDLERGRGYLVPDNVYEALVKIG-F-SLDSPAFYTVCESFDQ------ 117 (147)
Q Consensus 54 ~~~~i~~~ef~~~~~~~--------~~~~~~f~~~D~~~G~i~~~el~~~l~~~~-~-~~~~~~~~~~~~~~~~------ 117 (147)
+.|.++|++|..+.+.+ ..+..+|..|..+.+.++.++|..+|.... . ..+.+++..++..+-.
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~ 92 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVT 92 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccccc
Confidence 35788999988776654 478889988875557899999999998754 2 3566677766554311
Q ss_pred -CCCCcccHHHHHHHHHH
Q 032093 118 -NKNGRLRLDDFISLCIF 134 (147)
Q Consensus 118 -~~~~~i~~~eF~~~l~~ 134 (147)
...+.+++++|..+|.-
T Consensus 93 ~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 93 RYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred cccccCcCHHHHHHHHcC
Confidence 12235899999999873
No 107
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.02 E-value=0.019 Score=46.10 Aligned_cols=65 Identities=20% Similarity=0.413 Sum_probs=55.7
Q ss_pred cHHHHHHHHhhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q 032093 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF 69 (147)
Q Consensus 3 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 69 (147)
++..+.++|+..|+..+|++|-.+-+.+|-..+ ++...+..||..-|.|+||.++-+||+-.+..
T Consensus 193 ~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~l 257 (1118)
T KOG1029|consen 193 NKLKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDGKLSADEFILAMHL 257 (1118)
T ss_pred hhhHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCCcccHHHHHHHHHH
Confidence 345788999999999999999999999887655 45677889999999999999999999976643
No 108
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=95.99 E-value=0.09 Score=43.15 Aligned_cols=91 Identities=15% Similarity=0.168 Sum_probs=71.1
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHcCCCCCCH-----HHHHHHHHhhcCCCCCcccHHHHHHHHHHH-------H
Q 032093 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSL-----SVVQQMIRMYDFDRNGTMSFEEFVELNKFL-------L 71 (147)
Q Consensus 4 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~-----~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~-------~ 71 (147)
..+++..|+.++....|.++.+++..+|..+|...-. .+..+++...+++.-|.+++.+|...+... .
T Consensus 746 ~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~l~~~~ 825 (890)
T KOG0035|consen 746 LDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYEDLDTEL 825 (890)
T ss_pred HHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhhhcHHH
Confidence 4578899999999999999999999999999997664 234455555666667899999999988643 5
Q ss_pred HHHHHcccccCCCCceeHHHHHH
Q 032093 72 KVQHAFSDLERGRGYLVPDNVYE 94 (147)
Q Consensus 72 ~~~~~f~~~D~~~G~i~~~el~~ 94 (147)
++..+|+.+....-+|..+++..
T Consensus 826 r~i~s~~d~~ktk~~lL~eEL~~ 848 (890)
T KOG0035|consen 826 RAILAFEDWAKTKAYLLLEELVR 848 (890)
T ss_pred HHHHHHHHHHcchhHHHHHHHHh
Confidence 67777777774333788888877
No 109
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=95.82 E-value=0.07 Score=35.33 Aligned_cols=37 Identities=11% Similarity=0.149 Sum_probs=27.5
Q ss_pred CCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhhhhh
Q 032093 103 LDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQSAR 139 (147)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l~~~~~~~ 139 (147)
+.++.++++|..++....+.+++.|...++.....+.
T Consensus 93 Fvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~ 129 (174)
T PF05042_consen 93 FVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNAN 129 (174)
T ss_pred CCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccC
Confidence 4567788888888877777888888888877655443
No 110
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.71 E-value=0.034 Score=42.64 Aligned_cols=63 Identities=19% Similarity=0.380 Sum_probs=53.8
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 032093 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNK 68 (147)
Q Consensus 4 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 68 (147)
.+.+..-|+-+.+|..|.|+-.--++++.+. .++-.++..||...|.+.+|-+++.||+..+.
T Consensus 230 ReYYvnQFrtvQpDp~gfisGsaAknFFtKS--klpi~ELshIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 230 REYYVNQFRTVQPDPHGFISGSAAKNFFTKS--KLPIEELSHIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred HHHHHhhhhcccCCcccccccHHHHhhhhhc--cCchHHHHHHHhhcccCccccccHHHHHhhHh
Confidence 3455667888899999999999989888864 45568999999999999999999999999765
No 111
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.25 E-value=0.51 Score=39.03 Aligned_cols=116 Identities=17% Similarity=0.327 Sum_probs=79.9
Q ss_pred CCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHhhc--CCCCCcc-----cHHHHHHHHHHH---HHHHHHccccc-CCC
Q 032093 16 SEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYD--FDRNGTM-----SFEEFVELNKFL---LKVQHAFSDLE-RGR 84 (147)
Q Consensus 16 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d--~~~~~~i-----~~~ef~~~~~~~---~~~~~~f~~~D-~~~ 84 (147)
.+..|.|....+...+.+- -.+..+......+. .+.+..| +++.|..++..+ ..+..+|..+- ++.
T Consensus 159 vn~~grip~knI~k~F~~~---k~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klcpR~eie~iF~ki~~~~k 235 (1189)
T KOG1265|consen 159 VNFEGRIPVKNIIKTFSAD---KKEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLCPRPEIEEIFRKISGKKK 235 (1189)
T ss_pred ccccccccHHHHHHHhhcC---CchhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhcCCchhHHHHHHHhccCCC
Confidence 4567777777766665542 11133333333332 2222334 455566666554 68999999998 677
Q ss_pred CceeHHHHHHHHHHcC----------CCCCHHHHHHHHHhcCCCC----CCcccHHHHHHHHHH
Q 032093 85 GYLVPDNVYEALVKIG----------FSLDSPAFYTVCESFDQNK----NGRLRLDDFISLCIF 134 (147)
Q Consensus 85 G~i~~~el~~~l~~~~----------~~~~~~~~~~~~~~~~~~~----~~~i~~~eF~~~l~~ 134 (147)
-+++.++|..+++... ...++..+..+++.|..+. .|.++-+.|+.++..
T Consensus 236 pylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 236 PYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred ccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhC
Confidence 9999999999997632 2467888999999998764 678999999999886
No 112
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=95.14 E-value=0.27 Score=32.14 Aligned_cols=63 Identities=11% Similarity=0.167 Sum_probs=47.9
Q ss_pred HHHHhhh---CCCCCCcccHHHHHHHHHcCCC---CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q 032093 8 REWFDRV---DSEKTGSIAAAQLKHAFAVGNL---DFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (147)
Q Consensus 8 ~~~F~~~---D~~~~g~i~~~e~~~~l~~~~~---~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (147)
+.+|..| -..+...|+-..|..+++..++ .++...+.-+|..+...+...|+|++|...+..+
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~l 70 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAEL 70 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHH
Confidence 3444444 4556678999999999998766 6888999999999877777889999999887654
No 113
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=95.03 E-value=0.053 Score=46.62 Aligned_cols=58 Identities=19% Similarity=0.377 Sum_probs=50.2
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 032093 9 EWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELN 67 (147)
Q Consensus 9 ~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~ 67 (147)
..|+.+|+|+.|.|+..+|..++.. .-..+.+++.-++.....+.+...+|++|+.-+
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~-~k~ytqse~dfllscae~dend~~~y~dfv~rf 4118 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEG-HKHYTQSEIDFLLSCAEADENDMFDYEDFVDRF 4118 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhc-cccchhHHHHHHHHhhccCccccccHHHHHHHh
Confidence 3588899999999999999999985 346778888889998888999999999999744
No 114
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.89 E-value=0.077 Score=40.78 Aligned_cols=67 Identities=15% Similarity=0.254 Sum_probs=57.0
Q ss_pred HHHHHHccccc-CCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhhhhh
Q 032093 71 LKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQSAR 139 (147)
Q Consensus 71 ~~~~~~f~~~D-~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l~~~~~~~ 139 (147)
+-....|+... |-+|+|+-.--++++.+-. +.-.++..|++..|.+.||.+++.||+..+..+-..+
T Consensus 231 eYYvnQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d~DGALtL~EFcAAfHLVVaRk 298 (737)
T KOG1955|consen 231 EYYVNQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVDRDGALTLSEFCAAFHLVVARK 298 (737)
T ss_pred HHHHhhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccCccccccHHHHHhhHhheeecc
Confidence 45677888888 7899999999999997755 5568899999999999999999999999987765444
No 115
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=94.59 E-value=0.34 Score=28.67 Aligned_cols=65 Identities=12% Similarity=0.147 Sum_probs=41.5
Q ss_pred HHHHHHcccccCCCCceeHHHHHHHHHHc-------CC----CCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhhh
Q 032093 71 LKVQHAFSDLERGRGYLVPDNVYEALVKI-------GF----SLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQS 137 (147)
Q Consensus 71 ~~~~~~f~~~D~~~G~i~~~el~~~l~~~-------~~----~~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l~~~~~ 137 (147)
++++.+|+.+.+.+|.++...|..+|..+ |+ .-.+..++..|... .....|+...|+.-+..-|.
T Consensus 3 dKyRylFslisd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~ePq 78 (90)
T PF09069_consen 3 DKYRYLFSLISDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMSEPQ 78 (90)
T ss_dssp HHHHHHHHHHS-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT--T
T ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHhCCC
Confidence 57888888888889999999988888653 22 12456677777776 35567999999999887654
No 116
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=94.49 E-value=0.074 Score=45.81 Aligned_cols=57 Identities=12% Similarity=0.293 Sum_probs=48.7
Q ss_pred HHccccc-CCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 032093 75 HAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLC 132 (147)
Q Consensus 75 ~~f~~~D-~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l 132 (147)
..|+.|| +|.|.|++.+|..+|..-. +.+..+++-++.-...+++...+|++|+.-+
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~k-~ytqse~dfllscae~dend~~~y~dfv~rf 4118 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGHK-HYTQSEIDFLLSCAEADENDMFDYEDFVDRF 4118 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhccc-cchhHHHHHHHHhhccCccccccHHHHHHHh
Confidence 4688999 7999999999999997643 4578899999998888999999999998754
No 117
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=94.44 E-value=0.63 Score=37.65 Aligned_cols=95 Identities=20% Similarity=0.275 Sum_probs=71.5
Q ss_pred CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH------HHHHHHccccc-CCCCceeHHHHHHHHHHcCCCCCHHHHHH
Q 032093 38 FSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL------LKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYT 110 (147)
Q Consensus 38 ~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~------~~~~~~f~~~D-~~~G~i~~~el~~~l~~~~~~~~~~~~~~ 110 (147)
.....+..++...|.+.+|.+++.+-..+...+ ..+++.|+..+ .++|.+...++.......... + ++..
T Consensus 133 ~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~r--p-ev~~ 209 (746)
T KOG0169|consen 133 RREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKR--P-EVYF 209 (746)
T ss_pred hHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccC--c-hHHH
Confidence 445667889999999999999999988876654 56788888888 499999999999988776544 3 6677
Q ss_pred HHHhcCCCCCCcccHHHHHHHHHHhh
Q 032093 111 VCESFDQNKNGRLRLDDFISLCIFLQ 136 (147)
Q Consensus 111 ~~~~~~~~~~~~i~~~eF~~~l~~~~ 136 (147)
++..+..+ .+.++-++.+.++...+
T Consensus 210 ~f~~~s~~-~~~ls~~~L~~Fl~~~q 234 (746)
T KOG0169|consen 210 LFVQYSHG-KEYLSTDDLLRFLEEEQ 234 (746)
T ss_pred HHHHHhCC-CCccCHHHHHHHHHHhc
Confidence 77776533 66677776666665544
No 118
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=94.41 E-value=0.11 Score=40.59 Aligned_cols=65 Identities=18% Similarity=0.277 Sum_probs=58.4
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q 032093 6 VLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (147)
Q Consensus 6 ~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (147)
..+..|..+|.++.|+++..+...+|+..+...+...+..+.+..+.+-+|.+...+|..+++.+
T Consensus 594 ~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~ 658 (680)
T KOG0042|consen 594 RRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAI 658 (680)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHH
Confidence 44567899999999999999999999999989999999999999998889999999999988754
No 119
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.18 E-value=0.11 Score=42.89 Aligned_cols=131 Identities=20% Similarity=0.301 Sum_probs=104.3
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH--------------
Q 032093 5 AVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL-------------- 70 (147)
Q Consensus 5 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~-------------- 70 (147)
..+...|...|++++|.|+..+-...+...| +....+-++|...|..+.|+++..+|...+...
T Consensus 11 ~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s~--L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrlva~aq~~~~~~~~~~ 88 (847)
T KOG0998|consen 11 PLFDQYFKSADPQGDGRITGAEAVAFLSKSG--LPDQVLGQIWSLADSSGKGFLNRQGFYAALRLVAQAQSGRELSAKKV 88 (847)
T ss_pred chHHHhhhccCcccCCcccHHHhhhhhhccc--cchhhhhccccccccccCCccccccccccchHhhhhhcccCcCcccc
Confidence 3567889999999999999999888887654 456777888888888888999999888755321
Q ss_pred ----------------------------------------HHHHHHcccccCCCCceeHHHHHHHHHHcCCCCCHHHHHH
Q 032093 71 ----------------------------------------LKVQHAFSDLERGRGYLVPDNVYEALVKIGFSLDSPAFYT 110 (147)
Q Consensus 71 ----------------------------------------~~~~~~f~~~D~~~G~i~~~el~~~l~~~~~~~~~~~~~~ 110 (147)
-+...+|+....++|.++.+..+.++..-+ ++.+.+-.
T Consensus 89 ~~~~~~pp~~~~~~~~~~~~~~~~~~s~~~~~p~~~~qe~aky~q~f~s~~p~~g~~sg~~~~pil~~s~--Lp~~~l~~ 166 (847)
T KOG0998|consen 89 LPASAVPPPPKISHDTSPPSRPSSSTSAAPFVPAITPQEQAKYDQIFRSLSPSNGLLSGDKAKPILLNSK--LPSDVLGR 166 (847)
T ss_pred ccccCCCCCCccCccCCCcccCCCCCCCcccCCCCCHHHHHHHHHHHhccCCCCCccccchhhhhhhcCC--CChhhhcc
Confidence 245666777777899999999888886544 55667888
Q ss_pred HHHhcCCCCCCcccHHHHHHHHHHhhhhh
Q 032093 111 VCESFDQNKNGRLRLDDFISLCIFLQSAR 139 (147)
Q Consensus 111 ~~~~~~~~~~~~i~~~eF~~~l~~~~~~~ 139 (147)
++...|.+.+|.++..+|.-.+..+....
T Consensus 167 iw~l~d~d~~g~Ld~~ef~~am~l~~~~l 195 (847)
T KOG0998|consen 167 IWELSDIDKDGNLDRDEFAVAMHLINDLL 195 (847)
T ss_pred ccccccccccCCCChhhhhhhhhHHHHHh
Confidence 89999999999999999988887765443
No 120
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=94.16 E-value=0.11 Score=40.67 Aligned_cols=67 Identities=21% Similarity=0.326 Sum_probs=60.2
Q ss_pred HHHHHHccccc-CCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhhh
Q 032093 71 LKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQS 137 (147)
Q Consensus 71 ~~~~~~f~~~D-~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l~~~~~ 137 (147)
...+..|..+| ++.|+++..++.++|+..+...+.+.++.++...+.+..|.++..+|.+++..+..
T Consensus 593 ~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~ 660 (680)
T KOG0042|consen 593 LRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKN 660 (680)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhc
Confidence 45668889999 69999999999999999888899999999999999999999999999999887654
No 121
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=93.81 E-value=0.35 Score=35.13 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=21.4
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHHH
Q 032093 108 FYTVCESFDQNKNGRLRLDDFISLCIF 134 (147)
Q Consensus 108 ~~~~~~~~~~~~~~~i~~~eF~~~l~~ 134 (147)
-+.+++..|.|.|-.|+.++|++....
T Consensus 298 REHVMk~vDtNqDRlvtleEFL~~t~~ 324 (442)
T KOG3866|consen 298 REHVMKQVDTNQDRLVTLEEFLNDTDN 324 (442)
T ss_pred HHHHHHhcccchhhhhhHHHHHhhhhh
Confidence 455688889899999999999876554
No 122
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=93.67 E-value=0.039 Score=30.96 Aligned_cols=53 Identities=17% Similarity=0.315 Sum_probs=38.2
Q ss_pred HHHHHHcccccCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCC-------CCcccHHHHHH
Q 032093 71 LKVQHAFSDLERGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNK-------NGRLRLDDFIS 130 (147)
Q Consensus 71 ~~~~~~f~~~D~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~i~~~eF~~ 130 (147)
+++..+|+.+.++.++|+.++|++.|.. +.++-++.++..-. .|..+|..|++
T Consensus 6 eqv~~aFr~lA~~KpyVT~~dLr~~l~p-------e~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 6 EQVEEAFRALAGGKPYVTEEDLRRSLTP-------EQAEYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp HHHHHHHHHHCTSSSCEEHHHHHHHS-C-------CCHHHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred HHHHHHHHHHHcCCCcccHHHHHHHcCc-------HHHHHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 5788999999878899999999999733 34466666664422 25688888865
No 123
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.26 E-value=0.12 Score=42.83 Aligned_cols=64 Identities=22% Similarity=0.376 Sum_probs=53.0
Q ss_pred HHHHHccccc-CCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhhh
Q 032093 72 KVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQS 137 (147)
Q Consensus 72 ~~~~~f~~~D-~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l~~~~~ 137 (147)
....+|...| +.+|.|+..+....+...| ++...+..++...+....|.+++++|.-.+..+..
T Consensus 284 ~~~~if~q~d~~~dG~I~s~~~~~~f~~~g--l~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~~~ 348 (847)
T KOG0998|consen 284 KYSKIFSQVDKDNDGSISSNEARNIFLPFG--LSKPRLAHVWLLADTQNTGTLSKDEFALAMHLLEQ 348 (847)
T ss_pred HHHHHHHhccccCCCcccccccccccccCC--CChhhhhhhhhhcchhccCcccccccchhhhhhhh
Confidence 4566788889 6999999999999998755 66788999999999999999999988766655543
No 124
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=93.13 E-value=0.082 Score=32.58 Aligned_cols=33 Identities=24% Similarity=0.371 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHh
Q 032093 103 LDSPAFYTVCESFDQNKNGRLRLDDFISLCIFL 135 (147)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l~~~ 135 (147)
++++.++.++..+..|..|+|.|.+|++-+..-
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~e 36 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFSSE 36 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT---
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHcccc
Confidence 688999999999999999999999999877643
No 125
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=92.65 E-value=0.19 Score=36.71 Aligned_cols=63 Identities=16% Similarity=0.154 Sum_probs=43.7
Q ss_pred HHHHHccccc-CCCCceeHHHH---HHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhh
Q 032093 72 KVQHAFSDLE-RGRGYLVPDNV---YEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQ 136 (147)
Q Consensus 72 ~~~~~f~~~D-~~~G~i~~~el---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l~~~~ 136 (147)
.+.--|..+| +.++.|...|+ +.++.+-. ....=...+++..|.|+|-.|+++||..+|..-+
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s--~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~~ 400 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKS--KPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVEK 400 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhc--cHHHHhhhcchhcccCCCceecHHHHhhhhcccc
Confidence 4555678888 68888888884 44443322 1123467778888889998999999988887543
No 126
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=92.62 E-value=0.29 Score=38.85 Aligned_cols=70 Identities=21% Similarity=0.267 Sum_probs=52.1
Q ss_pred ccHHHHHHHHHcC-CCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH------HHHHHHHccccc-CCCCceeHHHH
Q 032093 22 IAAAQLKHAFAVG-NLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF------LLKVQHAFSDLE-RGRGYLVPDNV 92 (147)
Q Consensus 22 i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~------~~~~~~~f~~~D-~~~G~i~~~el 92 (147)
|+..+|..+++.+ .+..+...+.++|...|.+.+|-++|.+++.-+.. ++++...|+.|| +++ ..+.++.
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 3444455555443 33455666788999999999999999999986654 478999999999 677 8888876
No 127
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=92.44 E-value=0.3 Score=35.95 Aligned_cols=96 Identities=15% Similarity=0.168 Sum_probs=60.1
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHcC---CCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHH--HHHHHHHHHccc
Q 032093 5 AVLREWFDRVDSEKTGSIAAAQLKHAFAVG---NLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELN--KFLLKVQHAFSD 79 (147)
Q Consensus 5 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~---~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~--~~~~~~~~~f~~ 79 (147)
.+++.+|..+-.+.++......+..+-..+ -.+.=..++.=+|..+|.|.++.++..|...+. .....++..|..
T Consensus 211 ~RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ldknE~CikpFfns 290 (434)
T KOG3555|consen 211 NRLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIELDKNEACIKPFFNS 290 (434)
T ss_pred HHHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhccCchhHHHHHHhh
Confidence 466777777765655555555555553322 123334556667777777777777777776654 234566777777
Q ss_pred cc-CCCCceeHHHHHHHHHHcC
Q 032093 80 LE-RGRGYLVPDNVYEALVKIG 100 (147)
Q Consensus 80 ~D-~~~G~i~~~el~~~l~~~~ 100 (147)
.| ..+|.|+..|+-..+..-+
T Consensus 291 CD~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 291 CDTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred hcccccCccccchhhhhhccCC
Confidence 77 3777777777776665544
No 128
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=92.36 E-value=0.11 Score=37.96 Aligned_cols=57 Identities=14% Similarity=0.025 Sum_probs=37.5
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHH---HH---H-HHHHHHHccccc-CCCCceeHHHHHHHHHH
Q 032093 42 VVQQMIRMYDFDRNGTMSFEEFVEL---NK---F-LLKVQHAFSDLE-RGRGYLVPDNVYEALVK 98 (147)
Q Consensus 42 ~~~~~~~~~d~~~~~~i~~~ef~~~---~~---~-~~~~~~~f~~~D-~~~G~i~~~el~~~l~~ 98 (147)
.+.-.|..+|.|.++.|...|+.-+ +. + .+..+..|+..| +++-.|+..|++..|..
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 3445566777777777775554433 21 1 245677778888 78888888888877754
No 129
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=92.31 E-value=0.34 Score=35.71 Aligned_cols=62 Identities=11% Similarity=0.099 Sum_probs=47.1
Q ss_pred HHHHHHccccc-CCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhh
Q 032093 71 LKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQ 136 (147)
Q Consensus 71 ~~~~~~f~~~D-~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l~~~~ 136 (147)
..+.=+|..+| +.+|.++..|++.+-.. -.+.=++-+|...|...||.||-.||+.++.+..
T Consensus 250 ds~gWMFnklD~N~Dl~Ld~sEl~~I~ld----knE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 250 DSLGWMFNKLDTNYDLLLDQSELRAIELD----KNEACIKPFFNSCDTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred hhhhhhhhccccccccccCHHHhhhhhcc----CchhHHHHHHhhhcccccCccccchhhhhhccCC
Confidence 56777888888 78899998888776533 2234478888888888888999999888876644
No 130
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=88.82 E-value=0.51 Score=37.54 Aligned_cols=56 Identities=18% Similarity=0.254 Sum_probs=49.5
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHhhcCCCCCcccHHHH
Q 032093 7 LREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEF 63 (147)
Q Consensus 7 ~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef 63 (147)
+.++|..+|...+|.|+..++...|..+...-..+.+..+++.++++++ ..+.++.
T Consensus 557 ~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 557 LERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 4789999999999999999999999988777777888999999999888 7777766
No 131
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=87.81 E-value=2.5 Score=25.43 Aligned_cols=14 Identities=14% Similarity=0.143 Sum_probs=6.6
Q ss_pred CceeHHHHHHHHHH
Q 032093 85 GYLVPDNVYEALVK 98 (147)
Q Consensus 85 G~i~~~el~~~l~~ 98 (147)
+.|+++|++.+...
T Consensus 79 ~~I~k~eL~efW~q 92 (100)
T PF08414_consen 79 DSITKDELKEFWEQ 92 (100)
T ss_dssp SEE-HHHHHHHHHH
T ss_pred CCcCHHHHHHHHHH
Confidence 44555555555443
No 132
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=87.64 E-value=4.2 Score=24.10 Aligned_cols=61 Identities=11% Similarity=0.176 Sum_probs=38.4
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHcC-------C----CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 032093 5 AVLREWFDRVDSEKTGSIAAAQLKHAFAVG-------N----LDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNK 68 (147)
Q Consensus 5 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~-------~----~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 68 (147)
+.++.+|+.+ .|++|.++...|...|..+ | +...+..++..|... .....|+.++|+..+.
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~ 74 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLM 74 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHH
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHH
Confidence 5678899999 7889999999999888742 1 123556666666654 2456788888888764
No 133
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.53 E-value=0.57 Score=34.88 Aligned_cols=63 Identities=24% Similarity=0.248 Sum_probs=46.3
Q ss_pred cHHHHHHHHhhhCCCCCCcccHHHHHHHHHcCCCCCCH-HHHHHHHHhhcCCCCCcccHHHHHH
Q 032093 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSL-SVVQQMIRMYDFDRNGTMSFEEFVE 65 (147)
Q Consensus 3 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~-~~~~~~~~~~d~~~~~~i~~~ef~~ 65 (147)
+...+++.|+.+|+.+.|+|+..-+..++.+++...++ ..+..+-+.+|+..-|-|-.++|..
T Consensus 307 ~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg 370 (449)
T KOG2871|consen 307 PSEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLG 370 (449)
T ss_pred CCHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEeccccc
Confidence 34678999999999999999999999999999855544 4444444556666666665555554
No 134
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=86.63 E-value=0.84 Score=28.24 Aligned_cols=33 Identities=9% Similarity=0.200 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q 032093 38 FSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (147)
Q Consensus 38 ~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (147)
++++.+++++..+..|..|+|.|.+|+.-+...
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~e 36 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFSSE 36 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT---
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHcccc
Confidence 678999999999999999999999999876633
No 135
>PLN02222 phosphoinositide phospholipase C 2
Probab=85.40 E-value=3.1 Score=33.22 Aligned_cols=62 Identities=15% Similarity=0.228 Sum_probs=33.2
Q ss_pred HHHHHcccccCCCCceeHHHHHHHHHHcC-C-CCCHHHHHHHHHhcCC-CCCCcccHHHHHHHHHH
Q 032093 72 KVQHAFSDLERGRGYLVPDNVYEALVKIG-F-SLDSPAFYTVCESFDQ-NKNGRLRLDDFISLCIF 134 (147)
Q Consensus 72 ~~~~~f~~~D~~~G~i~~~el~~~l~~~~-~-~~~~~~~~~~~~~~~~-~~~~~i~~~eF~~~l~~ 134 (147)
.+..+|..|.. ++.++.++|..+|.... . ..+.+.+..++..+.. ...+.++++.|..+|.-
T Consensus 26 ei~~if~~~~~-~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 26 EIKTIFEKYSE-NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred HHHHHHHHhcC-CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 44555555542 34566666666665532 2 2345556666665422 23445777777777753
No 136
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=83.91 E-value=3.4 Score=24.12 Aligned_cols=50 Identities=14% Similarity=0.044 Sum_probs=34.2
Q ss_pred CcccHHHHHHHHHcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q 032093 20 GSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF 69 (147)
Q Consensus 20 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 69 (147)
-.|++.+|..+|.......+..+...+-..+|...+++||.=||-.+.+.
T Consensus 21 ~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtRl 70 (85)
T PF02761_consen 21 TIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFTRL 70 (85)
T ss_dssp SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred eEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHHHH
Confidence 56888888888887654444455667777888888888887777665443
No 137
>PLN02230 phosphoinositide phospholipase C 4
Probab=83.60 E-value=5.4 Score=32.00 Aligned_cols=64 Identities=16% Similarity=0.205 Sum_probs=41.0
Q ss_pred HHHHHHcccccCCCCceeHHHHHHHHHHcC-C--CCCHHHHHHHHHhcCC-------CCCCcccHHHHHHHHHH
Q 032093 71 LKVQHAFSDLERGRGYLVPDNVYEALVKIG-F--SLDSPAFYTVCESFDQ-------NKNGRLRLDDFISLCIF 134 (147)
Q Consensus 71 ~~~~~~f~~~D~~~G~i~~~el~~~l~~~~-~--~~~~~~~~~~~~~~~~-------~~~~~i~~~eF~~~l~~ 134 (147)
..+..+|..|..+++.++.++|..+|.... . ..+.+++..++..+.. -..+.++.++|..+|.-
T Consensus 29 ~ei~~lf~~~s~~~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 29 ADVRDLFEKYADGDAHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred HHHHHHHHHHhCCCCccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 467777777764447788888888877654 2 2355666666654421 12345999999998865
No 138
>PLN02228 Phosphoinositide phospholipase C
Probab=83.59 E-value=5.2 Score=31.90 Aligned_cols=49 Identities=10% Similarity=0.131 Sum_probs=23.7
Q ss_pred ceeHHHHHHHHHHcC-C-CCCHHHHHHHHHhcCCC----CCCcccHHHHHHHHHH
Q 032093 86 YLVPDNVYEALVKIG-F-SLDSPAFYTVCESFDQN----KNGRLRLDDFISLCIF 134 (147)
Q Consensus 86 ~i~~~el~~~l~~~~-~-~~~~~~~~~~~~~~~~~----~~~~i~~~eF~~~l~~ 134 (147)
.++.++|..+|.... . ..+.+.+..++..+... ..|.++.++|..+|.-
T Consensus 38 ~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 38 KMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred ccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 444444444444332 1 12334455555555322 2345777777777653
No 139
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=83.55 E-value=1.6 Score=34.53 Aligned_cols=59 Identities=15% Similarity=0.304 Sum_probs=43.8
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHcCCCCC----CHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q 032093 6 VLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDF----SLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (147)
Q Consensus 6 ~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~----~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (147)
-+..+|..+|.|++|.++..|+..+++..+-.+ ...+. . -.+..|.+++.-|...|+..
T Consensus 316 Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~--t----~~~~~G~ltl~g~l~~WsL~ 378 (625)
T KOG1707|consen 316 FLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDS--T----VKNERGWLTLNGFLSQWSLM 378 (625)
T ss_pred HHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCccccc--c----eecccceeehhhHHHHHHHH
Confidence 467899999999999999999999999775433 11110 0 12366899999999988754
No 140
>PHA02105 hypothetical protein
Probab=82.30 E-value=2.6 Score=22.54 Aligned_cols=54 Identities=15% Similarity=0.182 Sum_probs=39.1
Q ss_pred ceeHHHHHHHHHHcC---CCCCHHHHHHHHHhcCCCCC--CcccHHHHHHHHHHhhhhh
Q 032093 86 YLVPDNVYEALVKIG---FSLDSPAFYTVCESFDQNKN--GRLRLDDFISLCIFLQSAR 139 (147)
Q Consensus 86 ~i~~~el~~~l~~~~---~~~~~~~~~~~~~~~~~~~~--~~i~~~eF~~~l~~~~~~~ 139 (147)
++++++++.++.... +++..+-++.+-..+....- -.++|+||-..+..+|.+.
T Consensus 4 klt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~p~ip~~s 62 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIMPFIPRRS 62 (68)
T ss_pred eecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhccccccccccc
Confidence 478889999987653 45666667777666655443 3689999999988877654
No 141
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=82.29 E-value=1.6 Score=24.56 Aligned_cols=27 Identities=11% Similarity=0.124 Sum_probs=15.6
Q ss_pred HHHHHcccccC-CCCceeHHHHHHHHHH
Q 032093 72 KVQHAFSDLER-GRGYLVPDNVYEALVK 98 (147)
Q Consensus 72 ~~~~~f~~~D~-~~G~i~~~el~~~l~~ 98 (147)
++..+...|++ +.+.|+.++|.+.++.
T Consensus 26 ~~~~l~~~Y~~~k~~kIsR~~fvr~lR~ 53 (70)
T PF12174_consen 26 KMDLLQKHYEEFKKKKISREEFVRKLRQ 53 (70)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 44444455543 5666666666666655
No 142
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=81.79 E-value=4 Score=20.61 Aligned_cols=29 Identities=17% Similarity=0.251 Sum_probs=22.0
Q ss_pred HHHHHHHccccc--C-CCCceeHHHHHHHHHH
Q 032093 70 LLKVQHAFSDLE--R-GRGYLVPDNVYEALVK 98 (147)
Q Consensus 70 ~~~~~~~f~~~D--~-~~G~i~~~el~~~l~~ 98 (147)
+..+..+|..|. + ....+++.||+.++..
T Consensus 5 i~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 5 IETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 456777888887 3 5688999999988865
No 143
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=81.40 E-value=4.8 Score=33.67 Aligned_cols=69 Identities=10% Similarity=0.202 Sum_probs=52.2
Q ss_pred HHHHHHccccc-CCCCceeHHHHHHHHHHcCCCCCH-----HHHHHHHHhcCCCCCCcccHHHHHHHHHHhhhhh
Q 032093 71 LKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDS-----PAFYTVCESFDQNKNGRLRLDDFISLCIFLQSAR 139 (147)
Q Consensus 71 ~~~~~~f~~~D-~~~G~i~~~el~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~i~~~eF~~~l~~~~~~~ 139 (147)
..++..|..++ ...|.++++++...|..+|+.... .+...+...-+.+..|.|++.+|...|.+--...
T Consensus 747 ~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~l 821 (890)
T KOG0035|consen 747 DELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYEDL 821 (890)
T ss_pred HHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhhh
Confidence 57888888888 478999999999999999987654 2244444445556668899999999988754433
No 144
>PLN02228 Phosphoinositide phospholipase C
Probab=81.16 E-value=10 Score=30.34 Aligned_cols=63 Identities=13% Similarity=0.217 Sum_probs=47.4
Q ss_pred cHHHHHHHHhhhCCCCCCcccHHHHHHHHHcCCC--CCCHHHHHHHHHhhcCC----CCCcccHHHHHHHH
Q 032093 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNL--DFSLSVVQQMIRMYDFD----RNGTMSFEEFVELN 67 (147)
Q Consensus 3 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~d~~----~~~~i~~~ef~~~~ 67 (147)
+..++..+|..+..+ +.|+.++|..+|....- ..+.+.+..++..+... ..+.++++.|..++
T Consensus 22 ~~~ei~~if~~~s~~--~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl 90 (567)
T PLN02228 22 PPVSIKRLFEAYSRN--GKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYL 90 (567)
T ss_pred CcHHHHHHHHHhcCC--CccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHh
Confidence 456889999988643 58999999999987643 35567788888887643 23679999998876
No 145
>PLN02223 phosphoinositide phospholipase C
Probab=80.79 E-value=5.9 Score=31.34 Aligned_cols=64 Identities=11% Similarity=0.016 Sum_probs=41.5
Q ss_pred HHHHHHcccccCCCCceeHHHHHHHH---HHc-C-CCCCHHHHHHHHHhcCC--------CCCCcccHHHHHHHHHH
Q 032093 71 LKVQHAFSDLERGRGYLVPDNVYEAL---VKI-G-FSLDSPAFYTVCESFDQ--------NKNGRLRLDDFISLCIF 134 (147)
Q Consensus 71 ~~~~~~f~~~D~~~G~i~~~el~~~l---~~~-~-~~~~~~~~~~~~~~~~~--------~~~~~i~~~eF~~~l~~ 134 (147)
..++.+|..|..++|.++.+.+.+++ ... | ...+.++++.++..+-. ...+.++.++|.++|.-
T Consensus 16 ~~v~~~f~~~~~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 16 DLILNFFGNEFHGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 45667777776567777777777777 443 2 24566666666665421 12245999999998865
No 146
>PLN02222 phosphoinositide phospholipase C 2
Probab=80.42 E-value=9.1 Score=30.69 Aligned_cols=62 Identities=10% Similarity=0.149 Sum_probs=47.6
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHcCCC--CCCHHHHHHHHHhhcC-CCCCcccHHHHHHHH
Q 032093 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNL--DFSLSVVQQMIRMYDF-DRNGTMSFEEFVELN 67 (147)
Q Consensus 4 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~d~-~~~~~i~~~ef~~~~ 67 (147)
..++..+|..+.. .+.++.++|..+|....- ..+.+.++.|+..+.. ...+.++++.|..++
T Consensus 24 ~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL 88 (581)
T PLN02222 24 PREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYL 88 (581)
T ss_pred cHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHh
Confidence 4588999999864 479999999999987643 3567778888887632 235679999999876
No 147
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=80.06 E-value=18 Score=30.41 Aligned_cols=125 Identities=21% Similarity=0.214 Sum_probs=75.8
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHH-HHHHhhcCCCCCcccHHHHHHHHHHH-----HHHHHHccc---
Q 032093 9 EWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQ-QMIRMYDFDRNGTMSFEEFVELNKFL-----LKVQHAFSD--- 79 (147)
Q Consensus 9 ~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~-~~~~~~d~~~~~~i~~~ef~~~~~~~-----~~~~~~f~~--- 79 (147)
..+-.+|......|+..+++..|...+..++..... .-+.. +..+.+.++|++|..+...+ .....-|+.
T Consensus 148 k~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~te-d~~~k~dlsf~~f~~ly~~lmfs~~~a~l~e~~~~~~ 226 (1267)
T KOG1264|consen 148 KQIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFTE-DGARKDDLSFEQFHLLYKKLMFSQQKAILLEFKKDFI 226 (1267)
T ss_pred hhheeccchhhhheeHHhhhcccccceEEechHHHHHHHHhH-hhhccccccHHHHHHHHHHHhhccchhhhhcccchhh
Confidence 345556766667799999999999888876655432 22222 33466789999999887654 122222211
Q ss_pred c---c-CCCCceeHHHHHHHHHHcCCCCCH---HHHHHHHHhcC-----CCCCCcccHHHHHHHHHH
Q 032093 80 L---E-RGRGYLVPDNVYEALVKIGFSLDS---PAFYTVCESFD-----QNKNGRLRLDDFISLCIF 134 (147)
Q Consensus 80 ~---D-~~~G~i~~~el~~~l~~~~~~~~~---~~~~~~~~~~~-----~~~~~~i~~~eF~~~l~~ 134 (147)
+ + ..--.++..+|.++|......... ..+..++..+- ......+.++||+.+|--
T Consensus 227 ~~~~~~~d~~vV~~~ef~rFL~~~Q~e~~Asdr~av~~~~r~F~~D~~re~~EPyl~v~EFv~fLFS 293 (1267)
T KOG1264|consen 227 LGNTDRPDASVVYLQEFQRFLIHEQQEHWASDRNAVREFMRKFIDDTMRETAEPYLFVDEFVTFLFS 293 (1267)
T ss_pred hcCCCCccceEeeHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHhhhhhhccCcceeHHHHHHHHhh
Confidence 1 1 123579999999999653221111 12334443331 134557999999998864
No 148
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=79.77 E-value=8.5 Score=21.48 Aligned_cols=49 Identities=14% Similarity=0.093 Sum_probs=33.5
Q ss_pred eeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHh
Q 032093 87 LVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFL 135 (147)
Q Consensus 87 i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l~~~ 135 (147)
++.+++..++...|..+|+.++..+++.-+..+.-..+-+.+..++..+
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL~GL 62 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLLRNFLNGL 62 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHHHHHHHHH
Confidence 5567888888888999999999999988543333334444455555443
No 149
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=79.29 E-value=10 Score=22.18 Aligned_cols=52 Identities=4% Similarity=-0.003 Sum_probs=37.0
Q ss_pred CceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhh
Q 032093 85 GYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQ 136 (147)
Q Consensus 85 G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l~~~~ 136 (147)
..||.+||.+..+..|.++|++.++.++..+-.+.-.-.+-++=.+.+..+.
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkeia 64 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEIA 64 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999999999999888544433344444444444333
No 150
>PLN02230 phosphoinositide phospholipase C 4
Probab=78.73 E-value=13 Score=29.89 Aligned_cols=64 Identities=14% Similarity=0.214 Sum_probs=46.2
Q ss_pred cHHHHHHHHhhhCCCCCCcccHHHHHHHHHcCCC---CCCHHHHHHHHHhhcCC-------CCCcccHHHHHHHH
Q 032093 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNL---DFSLSVVQQMIRMYDFD-------RNGTMSFEEFVELN 67 (147)
Q Consensus 3 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~---~~~~~~~~~~~~~~d~~-------~~~~i~~~ef~~~~ 67 (147)
+..++..+|..+..++ +.++.++|..+|..-.- ..+.+.+..++..+-.. ..+.++++.|..++
T Consensus 27 p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL 100 (598)
T PLN02230 27 PVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYL 100 (598)
T ss_pred CcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHH
Confidence 3468899999996444 89999999999997652 34566677777654211 23469999999865
No 151
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=77.90 E-value=3.6 Score=23.07 Aligned_cols=54 Identities=13% Similarity=0.210 Sum_probs=35.1
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHhhcC-------CCCCcccHHHHHH
Q 032093 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDF-------DRNGTMSFEEFVE 65 (147)
Q Consensus 4 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~-------~~~~~i~~~ef~~ 65 (147)
.+.+.+.|+.+ .++.++||..+|+..|..- ..+-+...+.. ...|..+|..|+.
T Consensus 5 ~eqv~~aFr~l-A~~KpyVT~~dLr~~l~pe-------~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 5 AEQVEEAFRAL-AGGKPYVTEEDLRRSLTPE-------QAEYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp CHHHHHHHHHH-CTSSSCEEHHHHHHHS-CC-------CHHHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred HHHHHHHHHHH-HcCCCcccHHHHHHHcCcH-------HHHHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 46788999999 7778999999999986531 12333333321 1236688887764
No 152
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.12 E-value=4.2 Score=30.51 Aligned_cols=37 Identities=8% Similarity=0.240 Sum_probs=31.0
Q ss_pred HHHHHHcccccC-CCCceeHHHHHHHHHHcCCCCCHHH
Q 032093 71 LKVQHAFSDLER-GRGYLVPDNVYEALVKIGFSLDSPA 107 (147)
Q Consensus 71 ~~~~~~f~~~D~-~~G~i~~~el~~~l~~~~~~~~~~~ 107 (147)
++++++|+.+|+ ++|+|+.+-++.+|...+..+++.+
T Consensus 309 ~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a 346 (449)
T KOG2871|consen 309 EQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPA 346 (449)
T ss_pred HHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHH
Confidence 689999999994 8999999999999998875544433
No 153
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=76.99 E-value=13 Score=22.18 Aligned_cols=89 Identities=12% Similarity=0.080 Sum_probs=56.3
Q ss_pred cHHHHHHHHhhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHHccccc-
Q 032093 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFLLKVQHAFSDLE- 81 (147)
Q Consensus 3 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~f~~~D- 81 (147)
+.+.+...|..+ ...|+..+++.+++.+| +++.+|..+-.....+ .+ +...++..+-
T Consensus 2 ~~~~l~~~f~~i----~~~V~~~~Wk~laR~LG--Lse~~I~~i~~~~~~~------~e----------q~~qmL~~W~~ 59 (96)
T cd08315 2 PQETLRRSFDHF----IKEVPFDSWNRLMRQLG--LSENEIDVAKANERVT------RE----------QLYQMLLTWVN 59 (96)
T ss_pred cHhHHHHHHHHH----HHHCCHHHHHHHHHHcC--CCHHHHHHHHHHCCCC------HH----------HHHHHHHHHHH
Confidence 456677888877 34678889999999877 5677787777654211 12 2222222222
Q ss_pred CCCCceeHHHHHHHHHHcCCCCCHHHHHHHHH
Q 032093 82 RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCE 113 (147)
Q Consensus 82 ~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~ 113 (147)
.....-+...+.++|..++.....+.++..+-
T Consensus 60 ~~G~~At~~~L~~aL~~~~~~~~Ae~I~~~l~ 91 (96)
T cd08315 60 KTGRKASVNTLLDALEAIGLRLAKESIQDELI 91 (96)
T ss_pred hhCCCcHHHHHHHHHHHcccccHHHHHHHHHH
Confidence 11223567889999999988877776665543
No 154
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=76.94 E-value=7.7 Score=23.78 Aligned_cols=44 Identities=14% Similarity=0.156 Sum_probs=37.4
Q ss_pred HHHHccccc-CCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcC
Q 032093 73 VQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFD 116 (147)
Q Consensus 73 ~~~~f~~~D-~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~ 116 (147)
+..+|.... .++-..+..+++.+|..+|....++.++.++....
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~ 47 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK 47 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc
Confidence 344566667 58888999999999999999999999999999984
No 155
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=75.74 E-value=33 Score=26.28 Aligned_cols=81 Identities=19% Similarity=0.133 Sum_probs=56.9
Q ss_pred CCcccHHHHHHHHHcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH---HHHHHHHccccc-CCCCc---eeHHH
Q 032093 19 TGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF---LLKVQHAFSDLE-RGRGY---LVPDN 91 (147)
Q Consensus 19 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~---~~~~~~~f~~~D-~~~G~---i~~~e 91 (147)
...+.+..|.++|....-..+.-+...+-..+|...+++|+.-||=.+... -..+.+-|+.+. ..-|+ ++.+|
T Consensus 188 k~ivPW~~F~q~L~~~Hpi~~gleAmaLktTIDLtcnd~iS~FEFDvFTRLFqPw~tllkNWq~LavtHPGYmAFLTYDE 267 (563)
T KOG1785|consen 188 KTIVPWKTFRQALHKVHPISSGLEAMALKTTIDLTCNDFISNFEFDVFTRLFQPWKTLLKNWQTLAVTHPGYMAFLTYDE 267 (563)
T ss_pred cccccHHHHHHHHHhcCCCcchhHHHHhhceeccccccceeeehhhhHHHhhccHHHHHHhhhhhhccCCceeEEeeHHH
Confidence 457889999999998755555566677788889999999996665544433 344444455555 45554 78999
Q ss_pred HHHHHHHc
Q 032093 92 VYEALVKI 99 (147)
Q Consensus 92 l~~~l~~~ 99 (147)
++.-|.++
T Consensus 268 Vk~RLqk~ 275 (563)
T KOG1785|consen 268 VKARLQKY 275 (563)
T ss_pred HHHHHHHH
Confidence 88888764
No 156
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=74.86 E-value=14 Score=21.57 Aligned_cols=52 Identities=15% Similarity=0.070 Sum_probs=39.8
Q ss_pred CCcccHHHHHHHHHcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q 032093 19 TGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (147)
Q Consensus 19 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (147)
-..||..||...-+.-|.+++.+.++.+...+..+.-.-.+-++-..++..+
T Consensus 12 ln~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkei 63 (85)
T PF11116_consen 12 LNNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEI 63 (85)
T ss_pred HhcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999999999999876555555555555555433
No 157
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=74.19 E-value=19 Score=23.11 Aligned_cols=61 Identities=13% Similarity=0.288 Sum_probs=32.2
Q ss_pred CCcccHHHHHHHHHcCCCCCCHHHHHHHHHhhc-------CCCCCcccHHHHHHHHHHH-------HHHHHHccccc
Q 032093 19 TGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYD-------FDRNGTMSFEEFVELNKFL-------LKVQHAFSDLE 81 (147)
Q Consensus 19 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d-------~~~~~~i~~~ef~~~~~~~-------~~~~~~f~~~D 81 (147)
-+.||..||.++-+=+ ..+...++.++..+. .+..+.|+|+-|..+++.. +-.+.+|..|-
T Consensus 5 ~~~lsp~eF~qLq~y~--eys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~ 79 (138)
T PF14513_consen 5 WVSLSPEEFAQLQKYS--EYSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQ 79 (138)
T ss_dssp -S-S-HHHHHHHHHHH--HH----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS-
T ss_pred eeccCHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 3677778877765432 234455666666663 2234578888888877642 45677777776
No 158
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=73.91 E-value=18 Score=22.34 Aligned_cols=40 Identities=10% Similarity=0.143 Sum_probs=33.5
Q ss_pred ccccc-CCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcC
Q 032093 77 FSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFD 116 (147)
Q Consensus 77 f~~~D-~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~ 116 (147)
+...- .++..+|.+++..+|...|..+.+..+..+++.+.
T Consensus 9 YlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~ 49 (112)
T PTZ00373 9 YLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLE 49 (112)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 33344 47778999999999999999999999999998884
No 159
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=72.89 E-value=35 Score=29.08 Aligned_cols=72 Identities=11% Similarity=0.161 Sum_probs=54.0
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH----------------HHHHHHccccc----C-
Q 032093 24 AAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL----------------LKVQHAFSDLE----R- 82 (147)
Q Consensus 24 ~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~----------------~~~~~~f~~~D----~- 82 (147)
.+.|..++..+ ....+++.||..+..+...+++.+++..+++.. .++..+.+.|. .
T Consensus 207 ~e~f~~~l~kl---cpR~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a 283 (1189)
T KOG1265|consen 207 LEKFYRLLNKL---CPRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNA 283 (1189)
T ss_pred HHHHHHHHHhc---CCchhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhh
Confidence 33445555544 445788999999988888999999999988642 46777777775 2
Q ss_pred CCCceeHHHHHHHHHH
Q 032093 83 GRGYLVPDNVYEALVK 98 (147)
Q Consensus 83 ~~G~i~~~el~~~l~~ 98 (147)
..|.++.+-|...+..
T Consensus 284 ~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 284 EKGQMSTDGFVRYLMG 299 (1189)
T ss_pred hccccchhhhHHHhhC
Confidence 6799999999888854
No 160
>PLN02952 phosphoinositide phospholipase C
Probab=71.81 E-value=17 Score=29.40 Aligned_cols=55 Identities=13% Similarity=0.063 Sum_probs=44.0
Q ss_pred CCCceeHHHHHHHHHHcCC--CCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhhhh
Q 032093 83 GRGYLVPDNVYEALVKIGF--SLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQSA 138 (147)
Q Consensus 83 ~~G~i~~~el~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l~~~~~~ 138 (147)
+.|.++.+++..+.+.+.. .....++..+|..+.. +.+.++.++|.++|...+..
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e 69 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDE 69 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCC
Confidence 5789999999888877653 2367899999999964 44689999999999886653
No 161
>PRK00523 hypothetical protein; Provisional
Probab=71.79 E-value=11 Score=21.30 Aligned_cols=41 Identities=12% Similarity=0.143 Sum_probs=33.1
Q ss_pred HHcccccCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhc
Q 032093 75 HAFSDLERGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESF 115 (147)
Q Consensus 75 ~~f~~~D~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 115 (147)
..|+.+=.+|-.|+.+-++.++..+|-..|+..+..+++.+
T Consensus 28 k~~~k~l~~NPpine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 28 KMFKKQIRENPPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred HHHHHHHHHCcCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 33443334688899999999999999999999999998876
No 162
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=71.77 E-value=11 Score=20.75 Aligned_cols=33 Identities=6% Similarity=0.074 Sum_probs=29.5
Q ss_pred CCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhc
Q 032093 83 GRGYLVPDNVYEALVKIGFSLDSPAFYTVCESF 115 (147)
Q Consensus 83 ~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 115 (147)
+|-.|+.+-++.++..+|-..|+..+..+++.+
T Consensus 28 ~NPpine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 28 ENPPINEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred HCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 577899999999999999999999999988775
No 163
>cd07894 Adenylation_RNA_ligase Adenylation domain of RNA circularization proteins. RNA circularization proteins are capable of circularizing RNA molecules in an ATP-dependent reaction. RNA circularization may protect RNA from exonuclease activity. This model comprises the adenylation domain, the minimal catalytic unit that is common to all members of the ATP-dependent DNA ligase family, and the carboxy-terminal extension of RNA circularization protein that serves as a dimerization module. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation of nicked nucleic acid substrates using the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. The adenylation domain binds ATP and contains many active site residues.
Probab=71.04 E-value=11 Score=28.13 Aligned_cols=90 Identities=12% Similarity=0.170 Sum_probs=47.5
Q ss_pred CCCCCCcccHHHHHHHHHcCCCCCC----------HHHHHHHHHhhcCCCC-Ccc--------cHHHHHHHHHHHHHHHH
Q 032093 15 DSEKTGSIAAAQLKHAFAVGNLDFS----------LSVVQQMIRMYDFDRN-GTM--------SFEEFVELNKFLLKVQH 75 (147)
Q Consensus 15 D~~~~g~i~~~e~~~~l~~~~~~~~----------~~~~~~~~~~~d~~~~-~~i--------~~~ef~~~~~~~~~~~~ 75 (147)
+.++.+.++..+-..++..+|++.. ..+++.++......+- |-| ..--+....+....++.
T Consensus 135 ~~~~~~~lp~~eR~~lLe~lg~~~v~~~~~~~~~d~~~l~~~l~~~~~~G~EGVVlK~~~~~~~~~Ky~t~~~~~~di~~ 214 (342)
T cd07894 135 KKNTGRPLPVEERRELLEKYGLPTVRLFGEFTADEIEELKEIIRELDKEGREGVVLKDPDMRVPPLKYTTSYSNCSDIRY 214 (342)
T ss_pred EcCCCCCCCHHHHHHHHHhcCCCCcceEEEEecCCHHHHHHHHHHHHHCCCceEEEeccccccCcceeecCCCCcHHHHH
Confidence 3444567889999999998876422 2455666665543322 111 11111122233456666
Q ss_pred HcccccC-CCCceeHHHHHHHHHHcCCCCC
Q 032093 76 AFSDLER-GRGYLVPDNVYEALVKIGFSLD 104 (147)
Q Consensus 76 ~f~~~D~-~~G~i~~~el~~~l~~~~~~~~ 104 (147)
+|+.+=+ +.+++...=++.++.......+
T Consensus 215 ~~~~~~d~~~~~~~~Ri~R~~~~~~E~~~~ 244 (342)
T cd07894 215 AFRYPFDLGRDFFFSRIVREGFQSVELGES 244 (342)
T ss_pred HhhhccccCchHHHHHHHHHHHHHHHhCCc
Confidence 6666553 6666665555555554433333
No 164
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=70.82 E-value=36 Score=24.43 Aligned_cols=94 Identities=10% Similarity=0.133 Sum_probs=51.7
Q ss_pred CCCcccHHHHHHHHHcC--CCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH-----HHH----HHHcccccCCCCc
Q 032093 18 KTGSIAAAQLKHAFAVG--NLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL-----LKV----QHAFSDLERGRGY 86 (147)
Q Consensus 18 ~~g~i~~~e~~~~l~~~--~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~-----~~~----~~~f~~~D~~~G~ 86 (147)
-||.++..|.. +.+.+ -+.++.+.-+.+...+........++.+|+.-+... ..+ ..+|..- --||.
T Consensus 68 ADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~k~~~~~l~~~~~~~~~~~~~r~~l~~~lL~~l~~vA-~ADG~ 145 (267)
T PRK09430 68 AKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREGKEPDFPLREKLRQFRSVCGGRFDLLRMFLEIQIQAA-FADGS 145 (267)
T ss_pred cCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHH-HhcCC
Confidence 47999999987 33433 134556653333444433344457888888866431 111 2222222 15688
Q ss_pred eeHHHHHHHHHHcC--CCCCHHHHHHHHHh
Q 032093 87 LVPDNVYEALVKIG--FSLDSPAFYTVCES 114 (147)
Q Consensus 87 i~~~el~~~l~~~~--~~~~~~~~~~~~~~ 114 (147)
++..|- .++..+. ..++..+...+...
T Consensus 146 l~~~E~-~~L~~Ia~~Lgis~~df~~~~~~ 174 (267)
T PRK09430 146 LHPNER-QVLYVIAEELGFSRFQFDQLLRM 174 (267)
T ss_pred CCHHHH-HHHHHHHHHcCCCHHHHHHHHHH
Confidence 999993 3333321 34667777766555
No 165
>TIGR01209 RNA ligase, Pab1020 family. Members of this family are found, so far, in a single copy per genome and largely in thermophiles, of which only Aquifex aeolicus is bacterial rather than archaeal. PSI-BLAST converges after a single iteration to the whole of this family and reveals no convincing similarity to any other protein. The member protein Pab1020 has been characterized as an RNA ligase with circularization activity.
Probab=70.68 E-value=12 Score=28.22 Aligned_cols=97 Identities=11% Similarity=0.132 Sum_probs=51.0
Q ss_pred HhhhCCCCCCcccHHHHHHHHHcCCCCC-------CHH----HHHHHHHhhcCCCCCcccH---------HHHHHHHHHH
Q 032093 11 FDRVDSEKTGSIAAAQLKHAFAVGNLDF-------SLS----VVQQMIRMYDFDRNGTMSF---------EEFVELNKFL 70 (147)
Q Consensus 11 F~~~D~~~~g~i~~~e~~~~l~~~~~~~-------~~~----~~~~~~~~~d~~~~~~i~~---------~ef~~~~~~~ 70 (147)
|..+|.+....+++++-...+...|++. +.+ ++..++..++..+-.-|-+ --+....+..
T Consensus 163 FDI~d~~t~~~L~~~er~~l~e~yglp~Vpvlg~~~~~~~~~~~~eii~~L~~~gREGVVlK~~~~~~~~~KYtT~~~n~ 242 (374)
T TIGR01209 163 FDIREGKTNRSLPVEERLELAEKYGLPHVEILGVYTADEAVEEIYEIIERLNKEGREGVVMKDPEMRVKPLKYTTSYANI 242 (374)
T ss_pred EEEEECCCCccCCHHHHHHHHHHCCCCccceeeEEcHHHHHHHHHHHHHHhhhcCcceEEEcCccccCCcceeecCccCh
Confidence 4444556688999999999999887753 222 3455656665333222221 1122222334
Q ss_pred HHHHHHcccccC-CCCceeHHHHHHHHHHcCCCCCHHH
Q 032093 71 LKVQHAFSDLER-GRGYLVPDNVYEALVKIGFSLDSPA 107 (147)
Q Consensus 71 ~~~~~~f~~~D~-~~G~i~~~el~~~l~~~~~~~~~~~ 107 (147)
..++.+|+.+=+ +.++....=++.++.......+.++
T Consensus 243 ~Di~~~~~~~~d~g~df~~sRi~Re~f~~~E~~~~~~e 280 (374)
T TIGR01209 243 NDIKYAARYFFELGRDFFFSRILREAFQSYEFGEKGEE 280 (374)
T ss_pred HHHHHHHhhccccCchHHHHHHHHHHHHHHHhCCchHH
Confidence 555556655543 5555555555555544333333333
No 166
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=70.52 E-value=22 Score=21.83 Aligned_cols=54 Identities=9% Similarity=0.047 Sum_probs=42.3
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHH
Q 032093 7 LREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVE 65 (147)
Q Consensus 7 ~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~ 65 (147)
+...|.+.+..++-..+..+++.+|...|.....+.++.++..+.- + +.+|.+.
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~G----K-~i~ElIA 56 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELKG----K-DIEELIA 56 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhcC----C-CHHHHHH
Confidence 3455666677777788999999999999999999999999998852 2 4555554
No 167
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=69.94 E-value=7.5 Score=31.58 Aligned_cols=66 Identities=20% Similarity=0.272 Sum_probs=33.2
Q ss_pred HHHHHHcccccCCCCceeHHHHHHHHHHc---C-----CCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhh
Q 032093 71 LKVQHAFSDLERGRGYLVPDNVYEALVKI---G-----FSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQ 136 (147)
Q Consensus 71 ~~~~~~f~~~D~~~G~i~~~el~~~l~~~---~-----~~~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l~~~~ 136 (147)
.+++..|..+|.++|.++.+++..++... + ...+.+....++...+.+..|.+.+.++...+...+
T Consensus 18 ~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ll~~~~ 91 (646)
T KOG0039|consen 18 DKLQTFFDMYDKGDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGYITNEDLEILLLQIP 91 (646)
T ss_pred HHHHHHHHHHhhhcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccceeeecchhHHHHhch
Confidence 44555555555455666665555555432 1 112333445555555555555666555555555443
No 168
>PLN02223 phosphoinositide phospholipase C
Probab=69.46 E-value=26 Score=27.87 Aligned_cols=65 Identities=6% Similarity=0.043 Sum_probs=45.5
Q ss_pred cHHHHHHHHhhhCCCCCCcccHHHHHHHHH---cC-C-CCCCHHHHHHHHHhhcCC--------CCCcccHHHHHHHHH
Q 032093 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFA---VG-N-LDFSLSVVQQMIRMYDFD--------RNGTMSFEEFVELNK 68 (147)
Q Consensus 3 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~---~~-~-~~~~~~~~~~~~~~~d~~--------~~~~i~~~ef~~~~~ 68 (147)
+...++.+|..+ ..+.|.++...+..+|. .. | ...+.++++.++..+-.. ..+.++++.|..++.
T Consensus 14 ~p~~v~~~f~~~-~~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~ 91 (537)
T PLN02223 14 QPDLILNFFGNE-FHGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLF 91 (537)
T ss_pred CcHHHHHHHHHh-hcCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhc
Confidence 446789999999 46679999999999883 22 2 245566667776655322 225699999998763
No 169
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=68.42 E-value=5.6 Score=22.34 Aligned_cols=49 Identities=18% Similarity=0.181 Sum_probs=33.4
Q ss_pred CCcccHHHHHHHHHcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q 032093 19 TGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (147)
Q Consensus 19 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (147)
+-+++...+-.++. ..++......+...|+.=..+.|+-+||+..+..+
T Consensus 6 sp~~~F~~L~~~l~---~~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 6 SPWMPFPMLFSALS---KHLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQI 54 (70)
T ss_pred CCcccHHHHHHHHH---HHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 44556555544444 44666677777777766677899999999977654
No 170
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.17 E-value=15 Score=20.59 Aligned_cols=34 Identities=9% Similarity=0.117 Sum_probs=29.7
Q ss_pred CCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhc
Q 032093 82 RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESF 115 (147)
Q Consensus 82 ~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 115 (147)
.+|-.|+.+-++.++..+|-..|+..++.+++.+
T Consensus 34 k~NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i 67 (71)
T COG3763 34 KDNPPINEEMIRMMMAQMGQKPSEKKINQVMRSI 67 (71)
T ss_pred hhCCCCCHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 3678899999999999999999999999888765
No 171
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=67.48 E-value=23 Score=20.94 Aligned_cols=73 Identities=11% Similarity=0.004 Sum_probs=44.9
Q ss_pred CCcccHHHHHHHHHcC--CCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH-------HHHHHHcccccCCCCceeH
Q 032093 19 TGSIAAAQLKHAFAVG--NLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL-------LKVQHAFSDLERGRGYLVP 89 (147)
Q Consensus 19 ~g~i~~~e~~~~l~~~--~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~-------~~~~~~f~~~D~~~G~i~~ 89 (147)
+|.++..|...+-..+ .+.++..+...+...+........++.+|...+... .-+..+|+.-- -+|.++.
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~vA~-ADG~~~~ 91 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDYEERLELVEALWEVAY-ADGELDE 91 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-hcCCCCH
Confidence 6888988876655432 135667777888887766666667888888765431 12222222222 4677777
Q ss_pred HHH
Q 032093 90 DNV 92 (147)
Q Consensus 90 ~el 92 (147)
.|-
T Consensus 92 ~E~ 94 (104)
T cd07313 92 YEE 94 (104)
T ss_pred HHH
Confidence 773
No 172
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=66.89 E-value=11 Score=22.36 Aligned_cols=50 Identities=16% Similarity=0.104 Sum_probs=21.3
Q ss_pred CCceeHHHHHHHHHHcC--CCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 032093 84 RGYLVPDNVYEALVKIG--FSLDSPAFYTVCESFDQNKNGRLRLDDFISLCI 133 (147)
Q Consensus 84 ~G~i~~~el~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l~ 133 (147)
+|.++..|...+-.-+. ..+++.+...++..+........++.+|.+.+.
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 64 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIK 64 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 45555555333332211 124444555554444333333344555544443
No 173
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=66.81 E-value=10 Score=27.94 Aligned_cols=59 Identities=15% Similarity=0.240 Sum_probs=35.9
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHHcC----CCCCC-HHH-----------HHHHHHhhcCCCCCcccHHHHHHHH
Q 032093 9 EWFDRVDSEKTGSIAAAQLKHAFAVG----NLDFS-LSV-----------VQQMIRMYDFDRNGTMSFEEFVELN 67 (147)
Q Consensus 9 ~~F~~~D~~~~g~i~~~e~~~~l~~~----~~~~~-~~~-----------~~~~~~~~d~~~~~~i~~~ef~~~~ 67 (147)
..|...|-+++|.++-.++..++..- -.+.+ +.. -..+++..|.|.+.-|+++||+...
T Consensus 248 TFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t 322 (442)
T KOG3866|consen 248 TFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDT 322 (442)
T ss_pred hheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhh
Confidence 45667778889999988888777631 11111 110 1235556677777777777777644
No 174
>PRK01844 hypothetical protein; Provisional
Probab=65.94 E-value=16 Score=20.65 Aligned_cols=41 Identities=2% Similarity=0.026 Sum_probs=32.9
Q ss_pred HHcccccCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhc
Q 032093 75 HAFSDLERGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESF 115 (147)
Q Consensus 75 ~~f~~~D~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 115 (147)
..|+.+=.+|-.|+.+-++.++..+|-..|+..+..+.+.+
T Consensus 27 k~~~k~lk~NPpine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 27 KYMMNYLQKNPPINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 33444434678899999999999999999999999998876
No 175
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=65.49 E-value=17 Score=27.05 Aligned_cols=44 Identities=7% Similarity=0.107 Sum_probs=29.5
Q ss_pred CCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 032093 83 GRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLC 132 (147)
Q Consensus 83 ~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l 132 (147)
.+|.||++|-...++......+++.++.+++.++ ||-+||.+++
T Consensus 299 R~G~itReeal~~v~~~d~~~~~~~~~~~~~~lg------~t~~ef~~~~ 342 (343)
T TIGR03573 299 RSGRITREEAIELVKEYDGEFPKEDLEYFLKYLG------ISEEEFWKTV 342 (343)
T ss_pred HcCCCCHHHHHHHHHHhcccccHHHHHHHHHHhC------CCHHHHHHHh
Confidence 5677887777777766544455567777777775 6666666553
No 176
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=64.82 E-value=22 Score=19.77 Aligned_cols=47 Identities=13% Similarity=0.126 Sum_probs=32.8
Q ss_pred ccHHHHHHHHHcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 032093 22 IAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNK 68 (147)
Q Consensus 22 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 68 (147)
++.+++..++...|..++..++..+++.-+..+-..++-..+..++.
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL~ 60 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLLRNFLN 60 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHHHHHHH
Confidence 44568888888889999999999888876555444455444444443
No 177
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=64.82 E-value=25 Score=21.65 Aligned_cols=50 Identities=14% Similarity=0.240 Sum_probs=38.5
Q ss_pred ccccc-CCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHH
Q 032093 77 FSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISL 131 (147)
Q Consensus 77 f~~~D-~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eF~~~ 131 (147)
+...- .++..+|.+++..+|+..|..+.+..+..+++.+. ..+..+.+.-
T Consensus 7 ylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~-----GKdi~eLIa~ 57 (109)
T cd05833 7 YLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELE-----GKDVEELIAA 57 (109)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc-----CCCHHHHHHH
Confidence 33444 47779999999999999999999999999998885 2445565543
No 178
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=64.71 E-value=21 Score=19.35 Aligned_cols=48 Identities=10% Similarity=0.158 Sum_probs=34.8
Q ss_pred CCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhh
Q 032093 84 RGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQ 136 (147)
Q Consensus 84 ~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l~~~~ 136 (147)
+-.+|.+|+..++..++..++..++..++...- .+.-..|..+...+.
T Consensus 7 s~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v~-----~~er~k~~~M~~~L~ 54 (61)
T TIGR01639 7 SKKLSKEELNELINSLDEIPNRNDMLIIWNQVH-----GIERDKFVDMQENLK 54 (61)
T ss_pred hHHccHHHHHHHHHhhcCCCCHHHHHHHHHHHH-----HHHHHhHHHHHHHHH
Confidence 346889999999999999999999999988763 233345555544443
No 179
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=63.81 E-value=10 Score=15.90 Aligned_cols=14 Identities=29% Similarity=0.456 Sum_probs=7.3
Q ss_pred CCCCCCcccHHHHH
Q 032093 15 DSEKTGSIAAAQLK 28 (147)
Q Consensus 15 D~~~~g~i~~~e~~ 28 (147)
|-+++|.|+.-++.
T Consensus 1 DvN~DG~vna~D~~ 14 (21)
T PF00404_consen 1 DVNGDGKVNAIDLA 14 (21)
T ss_dssp -TTSSSSSSHHHHH
T ss_pred CCCCCCcCCHHHHH
Confidence 34556666655554
No 180
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=62.81 E-value=19 Score=18.34 Aligned_cols=33 Identities=15% Similarity=0.304 Sum_probs=23.1
Q ss_pred CCCcee-HHHHHHHHHHcCCCCCHHHHHHHHHhc
Q 032093 83 GRGYLV-PDNVYEALVKIGFSLDSPAFYTVCESF 115 (147)
Q Consensus 83 ~~G~i~-~~el~~~l~~~~~~~~~~~~~~~~~~~ 115 (147)
+.|.|+ ..++-..|...|..++++.++.+++.+
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~~ 47 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILRRA 47 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHHHc
Confidence 567786 344445555668889998888887764
No 181
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=62.70 E-value=34 Score=21.16 Aligned_cols=52 Identities=10% Similarity=0.081 Sum_probs=39.8
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHH
Q 032093 9 EWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVE 65 (147)
Q Consensus 9 ~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~ 65 (147)
..|.+.--.++..+|..++..+|...|.......+..++..+.. .+.++.+.
T Consensus 7 aAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~G-----KdI~ELIa 58 (112)
T PTZ00373 7 AAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLEG-----KTPHELIA 58 (112)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 34455545566679999999999999999999999999998852 34555554
No 182
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=62.14 E-value=23 Score=19.48 Aligned_cols=38 Identities=5% Similarity=0.107 Sum_probs=23.5
Q ss_pred cccc-CCCCceeHHHHHHHHHHc----------CCCCCHHHHHHHHHhc
Q 032093 78 SDLE-RGRGYLVPDNVYEALVKI----------GFSLDSPAFYTVCESF 115 (147)
Q Consensus 78 ~~~D-~~~G~i~~~el~~~l~~~----------~~~~~~~~~~~~~~~~ 115 (147)
+.|| ..+.+|+.+++.++...- |..+|...+-+++-..
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~g~~~~V~D~ktgeDiT~~iL~QIi~e~ 58 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVREGEDFKVVDAKTGEDITRSILLQIILEE 58 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHCCCeEEEEECCCCcccHHHHHHHHHHHH
Confidence 4567 477888888888887651 3445555555554443
No 183
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=61.43 E-value=16 Score=20.12 Aligned_cols=37 Identities=16% Similarity=0.248 Sum_probs=31.1
Q ss_pred CCCcccHHHHHHHHHcCCCCCCHHHHHHHHHhhcCCC
Q 032093 18 KTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDR 54 (147)
Q Consensus 18 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~ 54 (147)
.++.++..++...|..-|..++++.+++.++.++.++
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 3568889999999998899999999999999887554
No 184
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=61.39 E-value=7.2 Score=35.00 Aligned_cols=65 Identities=12% Similarity=0.034 Sum_probs=47.3
Q ss_pred cHHHHHHHHhhhCCCCCCcccHHHHHHHHHcC----CCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 032093 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVG----NLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNK 68 (147)
Q Consensus 3 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~----~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 68 (147)
..++++++|+.+|++..|.|...++...++.+ ++...... +.+...+....++.|++.+-...+.
T Consensus 1415 d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~ 1483 (1592)
T KOG2301|consen 1415 DFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALT 1483 (1592)
T ss_pred cHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHH
Confidence 35678999999999999999999999999976 33222222 4444445556778999888776554
No 185
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=61.33 E-value=14 Score=20.09 Aligned_cols=27 Identities=19% Similarity=0.114 Sum_probs=21.3
Q ss_pred ceeHHHHHHHHHHcCCCCCHHHHHHHH
Q 032093 86 YLVPDNVYEALVKIGFSLDSPAFYTVC 112 (147)
Q Consensus 86 ~i~~~el~~~l~~~~~~~~~~~~~~~~ 112 (147)
.|+.++|..+|+...-.++.+++....
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~ye 55 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKKYE 55 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 588999999999888888888877653
No 186
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.84 E-value=43 Score=21.70 Aligned_cols=88 Identities=13% Similarity=0.090 Sum_probs=54.6
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHHcC--CCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHH-HH---HHHHHHccccc-
Q 032093 9 EWFDRVDSEKTGSIAAAQLKHAFAVG--NLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNK-FL---LKVQHAFSDLE- 81 (147)
Q Consensus 9 ~~F~~~D~~~~g~i~~~e~~~~l~~~--~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~-~~---~~~~~~f~~~D- 81 (147)
-.|.....| |.++..|.......+ .++++.+++..++.....-+...+++-.|...+. ++ +.+..+=.++.
T Consensus 34 Llf~Vm~AD--G~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~Ld~e~R~eli~~mweI 111 (148)
T COG4103 34 LLFHVMEAD--GTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHLDEEQRLELIGLMWEI 111 (148)
T ss_pred HHHHHHhcc--cCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 345555444 677766654433322 5678889999999888777778888888888665 22 22222223333
Q ss_pred -CCCCceeHHHHHHHHHH
Q 032093 82 -RGRGYLVPDNVYEALVK 98 (147)
Q Consensus 82 -~~~G~i~~~el~~~l~~ 98 (147)
.-+|.++..|-.-+.+.
T Consensus 112 a~ADg~l~e~Ed~vi~Rv 129 (148)
T COG4103 112 AYADGELDESEDHVIWRV 129 (148)
T ss_pred HHccccccHHHHHHHHHH
Confidence 25788888775544443
No 187
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=60.26 E-value=41 Score=21.23 Aligned_cols=22 Identities=14% Similarity=0.120 Sum_probs=11.1
Q ss_pred Hccccc-CCCCceeHHHHHHHHH
Q 032093 76 AFSDLE-RGRGYLVPDNVYEALV 97 (147)
Q Consensus 76 ~f~~~D-~~~G~i~~~el~~~l~ 97 (147)
++..|| +++|.|+.-+++.++.
T Consensus 102 Ll~vyD~~rtG~I~vls~KvaL~ 124 (127)
T PF09068_consen 102 LLNVYDSQRTGKIRVLSFKVALI 124 (127)
T ss_dssp HHHHH-TT--SEEEHHHHHHHHH
T ss_pred HHHHhCCCCCCeeehhHHHHHHH
Confidence 345566 4666666666666554
No 188
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=58.69 E-value=40 Score=20.65 Aligned_cols=70 Identities=11% Similarity=0.220 Sum_probs=42.4
Q ss_pred hhcCCCCCcccHHHHHHHHHHHHHHHHHcccccCCC-CceeHHHHHHHHHHc---CC-CCCHHHHHHHHHhcCCCCCCc
Q 032093 49 MYDFDRNGTMSFEEFVELNKFLLKVQHAFSDLERGR-GYLVPDNVYEALVKI---GF-SLDSPAFYTVCESFDQNKNGR 122 (147)
Q Consensus 49 ~~d~~~~~~i~~~ef~~~~~~~~~~~~~f~~~D~~~-G~i~~~el~~~l~~~---~~-~~~~~~~~~~~~~~~~~~~~~ 122 (147)
.||...+.+|++++...++. --.-|+..|.++ .-|+..=+.+++... |. .++.+-+..++..++..-.|.
T Consensus 11 LYDT~tS~YITLedi~~lV~----~g~~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp~~~L~qlIr~yg~~~q~~ 85 (107)
T TIGR01848 11 LYDTETSSYVTLEDIRDLVR----EGREFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLSTDFLTQIIRFYGGSMQSF 85 (107)
T ss_pred ccCCCccceeeHHHHHHHHH----CCCeEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhChhHHHH
Confidence 35666777888877666553 234467777433 336666666666442 22 366777888888886444443
No 189
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=57.89 E-value=4.5 Score=27.72 Aligned_cols=58 Identities=17% Similarity=0.225 Sum_probs=40.2
Q ss_pred ccccc--CCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhh
Q 032093 77 FSDLE--RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQ 136 (147)
Q Consensus 77 f~~~D--~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l~~~~ 136 (147)
|-.+| .-+|++|-.|+..+-..+ ++ -+.=+..++...|.|.|++|+.++|...+...+
T Consensus 193 f~qld~~p~d~~~sh~el~pl~ap~-ip-me~c~~~f~e~cd~~nd~~ial~ew~~c~gikq 252 (259)
T KOG4004|consen 193 FGQLDQHPIDGYLSHTELAPLRAPL-IP-MEHCTTRFFETCDLDNDKYIALDEWAGCFGIKQ 252 (259)
T ss_pred eccccCCCccccccccccccccCCc-cc-HHhhchhhhhcccCCCCCceeHHHhhcccCcch
Confidence 45567 378999988765443221 01 122366788899999999999999998876543
No 190
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.52 E-value=24 Score=26.98 Aligned_cols=61 Identities=21% Similarity=0.238 Sum_probs=48.2
Q ss_pred HHHHHcccccCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 032093 72 KVQHAFSDLERGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIF 134 (147)
Q Consensus 72 ~~~~~f~~~D~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l~~ 134 (147)
....+|..+..-+|+|+-..-+.-|.. ..++...+-.+++..|.+.||.++-+||.-.-..
T Consensus 445 ~yde~fy~l~p~~gk~sg~~ak~~mv~--sklpnsvlgkiwklad~d~dg~ld~eefala~hl 505 (532)
T KOG1954|consen 445 TYDEIFYTLSPVNGKLSGRNAKKEMVK--SKLPNSVLGKIWKLADIDKDGMLDDEEFALANHL 505 (532)
T ss_pred chHhhhhcccccCceeccchhHHHHHh--ccCchhHHHhhhhhhcCCcccCcCHHHHHHHHHH
Confidence 467777777777899998887776644 3466778999999999999999999999755443
No 191
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=57.36 E-value=8.9 Score=25.92 Aligned_cols=47 Identities=17% Similarity=0.276 Sum_probs=36.7
Q ss_pred ccHHHHHHHHhhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHH
Q 032093 2 ENTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIR 48 (147)
Q Consensus 2 ~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 48 (147)
.....++++|..||+++--.++.+++..+|...|+-=+...++.++.
T Consensus 52 ~KRe~freaF~~Fd~~kVA~~~~~dverLl~d~gIIR~r~KI~A~i~ 98 (188)
T COG2818 52 KKREAFREAFHGFDPEKVAAMTEEDVERLLADAGIIRNRGKIKATIN 98 (188)
T ss_pred HhHHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchhhhHHHHHHHHH
Confidence 34568899999999999889999999999998877655555554443
No 192
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=56.71 E-value=40 Score=20.91 Aligned_cols=35 Identities=11% Similarity=0.169 Sum_probs=30.9
Q ss_pred CCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcC
Q 032093 82 RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFD 116 (147)
Q Consensus 82 ~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~ 116 (147)
.++..+|.+++..+|...|..+.+..+..+++.+.
T Consensus 13 ~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~ 47 (113)
T PLN00138 13 GGNTCPSAEDLKDILGSVGADADDDRIELLLSEVK 47 (113)
T ss_pred cCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHc
Confidence 36778999999999999999998888998888884
No 193
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=56.63 E-value=20 Score=28.17 Aligned_cols=76 Identities=8% Similarity=-0.038 Sum_probs=48.4
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH----HHHHHHHcccc
Q 032093 5 AVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF----LLKVQHAFSDL 80 (147)
Q Consensus 5 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~----~~~~~~~f~~~ 80 (147)
.....+|.++-+.+...+|..++..++..+|.....++--+.|..-+. ...-+.|..++..... ...++.+|..+
T Consensus 485 ~~~t~~f~h~lkk~~~~lsdsd~~a~l~slgl~~dk~egi~~F~~~a~-s~~gv~yl~v~~~i~sel~D~d~v~~~~~~f 563 (612)
T COG5069 485 RSNTALFNHVLKKDGCGLSDSDLCAWLGSLGLKGDKEEGIRSFGDPAG-SVSGVFYLDVLKGIHSELVDYDLVTRGFTEF 563 (612)
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHhccccCCccceeeccCCcc-ccccchHHHHHHHHhhhhcChhhhhhhHHHH
Confidence 344567887777777889999999999999887776654445554331 1124566666664432 24556666655
Q ss_pred c
Q 032093 81 E 81 (147)
Q Consensus 81 D 81 (147)
+
T Consensus 564 ~ 564 (612)
T COG5069 564 D 564 (612)
T ss_pred H
Confidence 5
No 194
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=56.20 E-value=44 Score=20.37 Aligned_cols=41 Identities=20% Similarity=0.277 Sum_probs=33.5
Q ss_pred eeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 032093 87 LVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLC 132 (147)
Q Consensus 87 i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l 132 (147)
||.+++.++|...|..+++..+..+++.+. ..+.++.+.-.
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aLa-----Gk~V~eli~~g 57 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSALN-----GKNIDEVISKG 57 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHHc-----CCCHHHHHHHH
Confidence 999999999999999999999999999874 24556655433
No 195
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=56.02 E-value=67 Score=24.96 Aligned_cols=80 Identities=16% Similarity=0.161 Sum_probs=55.1
Q ss_pred CCCCcccHHHHHHHHHcCC----CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH-------HHHHHHcccccCCCC
Q 032093 17 EKTGSIAAAQLKHAFAVGN----LDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL-------LKVQHAFSDLERGRG 85 (147)
Q Consensus 17 ~~~g~i~~~e~~~~l~~~~----~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~-------~~~~~~f~~~D~~~G 85 (147)
.|+...+.+||..+..... -.++-+.++.|-+.+|.|.+|.|+.+|=-.++..- ++-...|.. .+-
T Consensus 40 agds~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~~fH~---dD~ 116 (575)
T KOG4403|consen 40 AGDSRATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSEKFHG---DDK 116 (575)
T ss_pred cCCchhhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhhhccC---Ccc
Confidence 4555677777766655332 35677889999999999999999988766666432 222334433 457
Q ss_pred ceeHHHHHHHHHHc
Q 032093 86 YLVPDNVYEALVKI 99 (147)
Q Consensus 86 ~i~~~el~~~l~~~ 99 (147)
.|+.+++..++..-
T Consensus 117 ~ItVedLWeaW~~S 130 (575)
T KOG4403|consen 117 HITVEDLWEAWKES 130 (575)
T ss_pred ceeHHHHHHHHHhh
Confidence 89999999988653
No 196
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=55.55 E-value=54 Score=21.20 Aligned_cols=39 Identities=10% Similarity=0.275 Sum_probs=24.8
Q ss_pred HHHHHHcCCCCCHHHHHHHHHh----------cCCCCCCcccHHHHHHH
Q 032093 93 YEALVKIGFSLDSPAFYTVCES----------FDQNKNGRLRLDDFISL 131 (147)
Q Consensus 93 ~~~l~~~~~~~~~~~~~~~~~~----------~~~~~~~~i~~~eF~~~ 131 (147)
.+-..++|..++++++..++.. +-.+.+|..+...+.++
T Consensus 96 ~~e~eklGi~Vs~~El~d~l~~g~~p~~~~~~~f~~~tG~Fd~~~l~~f 144 (145)
T PF13623_consen 96 EQEFEKLGITVSDDELQDMLNQGTNPMLQQNPFFNPQTGQFDRAKLKQF 144 (145)
T ss_pred HHHHHHhCCccCHHHHHHHHhcCCCchhhhccccCcccCCcCHHHHHhh
Confidence 3334557888888888888721 12356777777666554
No 197
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=54.78 E-value=7.2 Score=26.74 Aligned_cols=22 Identities=14% Similarity=0.442 Sum_probs=10.7
Q ss_pred HHHHHhhcCCCCCcccHHHHHH
Q 032093 44 QQMIRMYDFDRNGTMSFEEFVE 65 (147)
Q Consensus 44 ~~~~~~~d~~~~~~i~~~ef~~ 65 (147)
.+++...|.|++++|++.||..
T Consensus 225 ~~f~e~cd~~nd~~ial~ew~~ 246 (259)
T KOG4004|consen 225 TRFFETCDLDNDKYIALDEWAG 246 (259)
T ss_pred hhhhhcccCCCCCceeHHHhhc
Confidence 3444444555555555554443
No 198
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=54.08 E-value=50 Score=20.31 Aligned_cols=52 Identities=13% Similarity=0.100 Sum_probs=39.6
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHH
Q 032093 9 EWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVE 65 (147)
Q Consensus 9 ~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~ 65 (147)
..|.+.--.++..+|.+++..+|...|.......+..+.+.+.. .+.++.+.
T Consensus 5 aAylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~G-----Kdi~eLIa 56 (109)
T cd05833 5 AAYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELEG-----KDVEELIA 56 (109)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 34445545566789999999999999999999999988888752 34555554
No 199
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=51.98 E-value=27 Score=22.46 Aligned_cols=31 Identities=10% Similarity=0.112 Sum_probs=25.2
Q ss_pred eeHHHHHHHHHHcCCCCCHHHHHHHHHhcCC
Q 032093 87 LVPDNVYEALVKIGFSLDSPAFYTVCESFDQ 117 (147)
Q Consensus 87 i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~ 117 (147)
.++++++.+...++.++|++++..+++.++.
T Consensus 27 WT~eDV~~~a~gme~~lTd~E~~aVL~~I~~ 57 (139)
T PF07128_consen 27 WTREDVRALADGMEYNLTDDEARAVLARIGD 57 (139)
T ss_pred ecHHHHHHHHhcCCCCCCHHHHHHHHHHHhc
Confidence 4778888887777778899999999888865
No 200
>cd07311 terB_like_1 tellurium resistance terB-like protein, subgroup 1. This family includes several uncharacterized bacterial proteins. The prototype of this CD is tellurite resistance protein from Nostoc punctiforme that belongs to COG3793. Its precise biological function and its mechanism responsible for tellurium resistance still remains rather poorly understood.
Probab=51.64 E-value=65 Score=20.98 Aligned_cols=91 Identities=15% Similarity=0.153 Sum_probs=48.1
Q ss_pred CCCcccHHHHHHHHHcC-CCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH---HHHHHHHcccccCCCCceeHHH--
Q 032093 18 KTGSIAAAQLKHAFAVG-NLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF---LLKVQHAFSDLERGRGYLVPDN-- 91 (147)
Q Consensus 18 ~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~---~~~~~~~f~~~D~~~G~i~~~e-- 91 (147)
-+|.++..|...+-..+ ...++.+..+.++.. ..+..++...|...... ...+..++ ..---||.++..|
T Consensus 36 ADG~Vse~Ei~~~~~~m~~~~L~~e~~~~aie~---~~~~~L~~~~~~~~~~~~~~~~ll~~~l-~vA~ADG~l~~~E~~ 111 (150)
T cd07311 36 GDGVISPEERDWAIGYAAARGGDADMVEELKEY---TADEDLEEVDFRSPNIKSSRRALLYDAI-QVCAADGELSPGEVA 111 (150)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHh---CccccHHHHHHHHHhcchhHHHHHHHHH-HHHHcCCCCCHHHHH
Confidence 37899988875544432 125777777777777 33333443333322111 11111121 1111578888888
Q ss_pred -HHHHHHHcCCCCCHHHHHHHHHh
Q 032093 92 -VYEALVKIGFSLDSPAFYTVCES 114 (147)
Q Consensus 92 -l~~~l~~~~~~~~~~~~~~~~~~ 114 (147)
+.++...+| ++..++..+.+.
T Consensus 112 lL~~iA~~LG--is~~~~~~l~~~ 133 (150)
T cd07311 112 AVRKAASLLG--ISEDEVQKLEEI 133 (150)
T ss_pred HHHHHHHHcC--CCHHHHHHHHHH
Confidence 333333444 667777776665
No 201
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=51.57 E-value=26 Score=20.12 Aligned_cols=45 Identities=9% Similarity=0.260 Sum_probs=27.0
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHhhcCC
Q 032093 5 AVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFD 53 (147)
Q Consensus 5 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~ 53 (147)
..++++...- ...|+||..++..+|.. ..++.+.+..++..+...
T Consensus 7 ~~i~~Li~~g--K~~G~lT~~eI~~~L~~--~~~~~e~id~i~~~L~~~ 51 (82)
T PF03979_consen 7 EAIKKLIEKG--KKKGYLTYDEINDALPE--DDLDPEQIDEIYDTLEDE 51 (82)
T ss_dssp HHHHHHHHHH--HHHSS-BHHHHHHH-S---S---HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH--hhcCcCCHHHHHHHcCc--cCCCHHHHHHHHHHHHHC
Confidence 3455544432 34689999999999984 346678888888887543
No 202
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=51.56 E-value=81 Score=24.96 Aligned_cols=58 Identities=14% Similarity=0.106 Sum_probs=42.4
Q ss_pred HHhhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHhh---cC-----CCCCcccHHHHHHHH
Q 032093 10 WFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMY---DF-----DRNGTMSFEEFVELN 67 (147)
Q Consensus 10 ~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~---d~-----~~~~~i~~~ef~~~~ 67 (147)
+|..+-...++.++.-.|..+|++.|+.-++.-++.++..+ +. .....++.+.|..++
T Consensus 91 LFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI 156 (622)
T KOG0506|consen 91 LFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCI 156 (622)
T ss_pred hhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhh
Confidence 57777544579999999999999999988877777766654 21 233567777787754
No 203
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=51.41 E-value=40 Score=22.70 Aligned_cols=35 Identities=11% Similarity=0.110 Sum_probs=28.2
Q ss_pred CCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHhh
Q 032093 16 SEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMY 50 (147)
Q Consensus 16 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 50 (147)
.|.+|+++.+++...++.-+..++.+.+.++...-
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d 62 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVVESD 62 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcC
Confidence 46789999999999887666678888888887753
No 204
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=50.34 E-value=34 Score=23.12 Aligned_cols=37 Identities=14% Similarity=0.176 Sum_probs=23.3
Q ss_pred CCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHhhc
Q 032093 15 DSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYD 51 (147)
Q Consensus 15 D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 51 (147)
..+.+|+++.+++...+..-+..++.++++.++..-+
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDD 62 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-S
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCC
Confidence 3567899999999988888777788888888887643
No 205
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.93 E-value=34 Score=22.14 Aligned_cols=32 Identities=16% Similarity=0.200 Sum_probs=16.0
Q ss_pred CCCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 032093 102 SLDSPAFYTVCESFDQNKNGRLRLDDFISLCI 133 (147)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l~ 133 (147)
.++..+++.++.....-+...+++-.|...+.
T Consensus 62 ~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~ 93 (148)
T COG4103 62 GIDGEELDALIEAGEEAGYEAIDLYSFTSVLK 93 (148)
T ss_pred CCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 35555555555554433344455555554444
No 206
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=48.38 E-value=1.5e+02 Score=24.95 Aligned_cols=27 Identities=7% Similarity=0.026 Sum_probs=15.6
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHHHhh
Q 032093 108 FYTVCESFDQNKNGRLRLDDFISLCIFLQ 136 (147)
Q Consensus 108 ~~~~~~~~~~~~~~~i~~~eF~~~l~~~~ 136 (147)
++.-|. ..++...|+...|+.-+...|
T Consensus 556 vrsCF~--~v~~~pei~~~~f~dw~~~ep 582 (966)
T KOG4286|consen 556 VRSCFQ--FVNNKPEIEAALFLDWMRLEP 582 (966)
T ss_pred HHHHHH--hcCCCCcchHHHHHHHhccCc
Confidence 444444 235566677777776655443
No 207
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=48.06 E-value=63 Score=19.79 Aligned_cols=43 Identities=16% Similarity=0.373 Sum_probs=33.8
Q ss_pred cCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHH
Q 032093 81 ERGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFI 129 (147)
Q Consensus 81 D~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eF~ 129 (147)
+.+. .||.+++..+|...|..+.+..+..++..+. .++.++.+
T Consensus 12 ~~g~-~it~e~I~~IL~AAGveVee~~~k~~v~aL~-----GkdIeElI 54 (106)
T PRK06402 12 SAGK-EINEDNLKKVLEAAGVEVDEARVKALVAALE-----DVNIEEAI 54 (106)
T ss_pred hcCC-CCCHHHHHHHHHHcCCCccHHHHHHHHHHHc-----CCCHHHHH
Confidence 3344 8999999999999999999999999988874 24455544
No 208
>cd08316 Death_FAS_TNFRSF6 Death domain of FAS or TNF receptor superfamily member 6. Death Domain (DD) found in the FS7-associated cell surface antigen (FAS). FAS, also known as TNFRSF6 (TNF receptor superfamily member 6), APT1, CD95, FAS1, or APO-1, together with FADD (Fas-associating via Death Domain) and caspase 8, is an integral part of the death inducing signalling complex (DISC), which plays an important role in the induction of apoptosis and is activated by binding of the ligand FasL to FAS. FAS also plays a critical role in self-tolerance by eliminating cell types (autoreactive T and B cells) that contribute to autoimmunity. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in sign
Probab=47.52 E-value=61 Score=19.44 Aligned_cols=78 Identities=13% Similarity=0.080 Sum_probs=46.4
Q ss_pred CcccHHHHHHHHHcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHHcccccCCCCceeHHHHHHHHHHc
Q 032093 20 GSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFLLKVQHAFSDLERGRGYLVPDNVYEALVKI 99 (147)
Q Consensus 20 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~f~~~D~~~G~i~~~el~~~l~~~ 99 (147)
..|+..+++.+.+.+| +++..+..+-.....+ ..+.-..++ +.+.. --...| +...+..+|+.+
T Consensus 16 ~~~~~~~wK~faR~lg--lse~~Id~I~~~~~~d-----~~Eq~~qmL---~~W~~----~~G~~a--~~~~Li~aLr~~ 79 (97)
T cd08316 16 DVMTLKDVKKFVRKSG--LSEPKIDEIKLDNPQD-----TAEQKVQLL---RAWYQ----SHGKTG--AYRTLIKTLRKA 79 (97)
T ss_pred HHcCHHHHHHHHHHcC--CCHHHHHHHHHcCCCC-----hHHHHHHHH---HHHHH----HhCCCc--hHHHHHHHHHHc
Confidence 4677888999999877 5677777777655322 123222221 11111 111223 357888999998
Q ss_pred CCCCCHHHHHHHHH
Q 032093 100 GFSLDSPAFYTVCE 113 (147)
Q Consensus 100 ~~~~~~~~~~~~~~ 113 (147)
+.....+.+..++.
T Consensus 80 ~l~~~Ad~I~~~l~ 93 (97)
T cd08316 80 KLCTKADKIQDIIE 93 (97)
T ss_pred cchhHHHHHHHHHH
Confidence 88766666666654
No 209
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=47.02 E-value=53 Score=25.90 Aligned_cols=63 Identities=16% Similarity=0.119 Sum_probs=46.6
Q ss_pred HHHHHHccccc-CCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhc---CC-----CCCCcccHHHHHHHHH
Q 032093 71 LKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESF---DQ-----NKNGRLRLDDFISLCI 133 (147)
Q Consensus 71 ~~~~~~f~~~D-~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~---~~-----~~~~~i~~~eF~~~l~ 133 (147)
..-..+|..+. .+++.++.-.|.++|++.|..-++.-+..++..+ +. ...+.++.+-|.+++.
T Consensus 86 rleDLLFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~ 157 (622)
T KOG0506|consen 86 RLEDLLFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIF 157 (622)
T ss_pred hhhhhhhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhc
Confidence 34566788887 4679999999999999999887776777776654 21 2233588888888764
No 210
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.84 E-value=52 Score=25.31 Aligned_cols=56 Identities=21% Similarity=0.385 Sum_probs=39.1
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHH
Q 032093 7 LREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVE 65 (147)
Q Consensus 7 ~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~ 65 (147)
+-++|..+.+- +|.||-..-+.-+- .-.++...+-++|+..|.+.+|.++-+||.-
T Consensus 446 yde~fy~l~p~-~gk~sg~~ak~~mv--~sklpnsvlgkiwklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 446 YDEIFYTLSPV-NGKLSGRNAKKEMV--KSKLPNSVLGKIWKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred hHhhhhccccc-CceeccchhHHHHH--hccCchhHHHhhhhhhcCCcccCcCHHHHHH
Confidence 34566666554 57777665555443 3456678888888888888888888888864
No 211
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=45.51 E-value=50 Score=21.12 Aligned_cols=50 Identities=14% Similarity=0.220 Sum_probs=39.2
Q ss_pred CCCceeHHHHHHHHHHcC---------CCCCHHHHHHHHHhcCCCCCCc-ccHHHHHHHH
Q 032093 83 GRGYLVPDNVYEALVKIG---------FSLDSPAFYTVCESFDQNKNGR-LRLDDFISLC 132 (147)
Q Consensus 83 ~~G~i~~~el~~~l~~~~---------~~~~~~~~~~~~~~~~~~~~~~-i~~~eF~~~l 132 (147)
|+-.||.+||.+++..-. +.++++++..+.+.+.....+. ++..|-++..
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~~ 139 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRAA 139 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHHh
Confidence 888999999999997632 2468999999999987766554 9988876653
No 212
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=42.98 E-value=67 Score=21.72 Aligned_cols=34 Identities=21% Similarity=0.249 Sum_probs=17.9
Q ss_pred CCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhc
Q 032093 82 RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESF 115 (147)
Q Consensus 82 ~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 115 (147)
+.+|+++.+++.+.+..-+..++.+++..+...-
T Consensus 28 d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~ 61 (186)
T PF01885_consen 28 DPDGWVSVDDLLRALRFKGLWVTEEDIREVVETD 61 (186)
T ss_dssp -TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-
T ss_pred CCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhC
Confidence 3567777777766666655556666666666553
No 213
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=42.53 E-value=56 Score=20.10 Aligned_cols=27 Identities=11% Similarity=0.225 Sum_probs=14.8
Q ss_pred eHHHHHHHHHHcCCCCCHHHHHHHHHh
Q 032093 88 VPDNVYEALVKIGFSLDSPAFYTVCES 114 (147)
Q Consensus 88 ~~~el~~~l~~~~~~~~~~~~~~~~~~ 114 (147)
+.+|++.++...+..+++++++.++..
T Consensus 80 ~~dElrai~~~~~~~~~~e~l~~ILd~ 106 (112)
T PRK14981 80 TRDELRAIFAKERYTLSPEELDEILDI 106 (112)
T ss_pred CHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 355555555555555555555555543
No 214
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=42.06 E-value=13 Score=23.34 Aligned_cols=15 Identities=20% Similarity=0.386 Sum_probs=7.8
Q ss_pred CCCcccHHHHHHHHH
Q 032093 54 RNGTMSFEEFVELNK 68 (147)
Q Consensus 54 ~~~~i~~~ef~~~~~ 68 (147)
-||.|+.+|-..+..
T Consensus 36 aDG~v~~~E~~~i~~ 50 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQ 50 (140)
T ss_dssp TTSS--CHHHHHHHH
T ss_pred cCCCCCHHHHHHHHH
Confidence 457777777665544
No 215
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=41.92 E-value=62 Score=20.10 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=22.2
Q ss_pred eeHHHHHHHHHHcCCCCCHHHHHHHHHhc
Q 032093 87 LVPDNVYEALVKIGFSLDSPAFYTVCESF 115 (147)
Q Consensus 87 i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 115 (147)
-+.+|++.++..-+..+++++++.++...
T Consensus 80 ~t~~ElRsIla~e~~~~s~E~l~~Ildiv 108 (114)
T COG1460 80 RTPDELRSILAKERVMLSDEELDKILDIV 108 (114)
T ss_pred CCHHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 35678888888888888888888776654
No 216
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=41.52 E-value=27 Score=22.76 Aligned_cols=27 Identities=15% Similarity=0.323 Sum_probs=16.5
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHH
Q 032093 6 VLREWFDRVDSEKTGSIAAAQLKHAFA 32 (147)
Q Consensus 6 ~~~~~F~~~D~~~~g~i~~~e~~~~l~ 32 (147)
.+..--...|..+.++||.++++.++-
T Consensus 70 ~L~~rL~~le~~rg~Y~TiSeLKT~vy 96 (148)
T PF12486_consen 70 QLADRLNQLEEQRGKYMTISELKTAVY 96 (148)
T ss_pred HHHHHHHHHHHhcCCceeHHHHHHHHH
Confidence 344444555666666677777776654
No 217
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=41.23 E-value=18 Score=32.68 Aligned_cols=65 Identities=8% Similarity=0.024 Sum_probs=48.2
Q ss_pred HHHHHHHccccc-CCCCceeHHHHHHHHHHcCCC----CCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHh
Q 032093 70 LLKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFS----LDSPAFYTVCESFDQNKNGRLRLDDFISLCIFL 135 (147)
Q Consensus 70 ~~~~~~~f~~~D-~~~G~i~~~el~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l~~~ 135 (147)
++...++|..+| +..|+|...++..+++.+..+ ...+. +.+-..++...++.|++.+=+-++.+.
T Consensus 1416 ~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~~r 1485 (1592)
T KOG2301|consen 1416 FEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALTKR 1485 (1592)
T ss_pred HHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHHHH
Confidence 367899999999 699999999999999987533 22222 445555677778888888877776653
No 218
>PF05819 NolX: NolX protein; InterPro: IPR008718 This family consists of Rhizobium NolX and Xanthomonas HrpF proteins. The interaction between the plant pathogen Xanthomonas campestris pv. vesicatoria (strain 85-10) and its host plants is controlled by hrp genes (hypersensitive reaction and pathogenicity), which encode a type III protein secretion system. Among type III-secreted proteins are avirulence proteins, effectors involved in the induction of plant defence reactions. HrpF is dispensable for protein secretion but required for AvrBs3 recognition in planta, is thought to function as a translocator of effector proteins into the host cell []. NolX, a Glycine max (Soybean) cultivar specificity protein, is secreted by a type III secretion system (TTSS) and shows homology to HrpF. It is not known whether NolX functions at the bacterium-plant interface or acts inside the host cell. NolX is expressed in planta only during the early stages of nodule development [].; GO: 0009877 nodulation
Probab=40.97 E-value=1.9e+02 Score=23.17 Aligned_cols=99 Identities=13% Similarity=0.233 Sum_probs=52.2
Q ss_pred HHHhhhCCCC----CCcccHHHHHHHHHcC----------------------------CCCCCHH-HHHHHHHhhcCCCC
Q 032093 9 EWFDRVDSEK----TGSIAAAQLKHAFAVG----------------------------NLDFSLS-VVQQMIRMYDFDRN 55 (147)
Q Consensus 9 ~~F~~~D~~~----~g~i~~~e~~~~l~~~----------------------------~~~~~~~-~~~~~~~~~d~~~~ 55 (147)
++|..++..+ .|.|+..++..+-... .-.++.. .++.++++-| .=.
T Consensus 303 ~lf~AigsqgdGkcgGKI~AkDls~fs~~H~qva~y~~~qA~~Y~qnYipSD~~~~~~psvMT~nDA~RELYrYSd-yLP 381 (624)
T PF05819_consen 303 ALFYAIGSQGDGKCGGKIKAKDLSKFSSHHPQVAEYAEQQAESYTQNYIPSDSKDNAQPSVMTENDAMRELYRYSD-YLP 381 (624)
T ss_pred HHHHHhccCCCCCcCCeechhhHHHHHhcChHHHHHHHHHhhhhhhccCCCCCCCCCCCcccchhHHHHHHHHhhh-ccc
Confidence 3566776654 4678888877664320 0012222 2344444332 344
Q ss_pred CcccHHHHHHHHH-----------------HHHHHHHHccc-ccCCCCceeHHHHHHHHHHcCCCCCHHHHH
Q 032093 56 GTMSFEEFVELNK-----------------FLLKVQHAFSD-LERGRGYLVPDNVYEALVKIGFSLDSPAFY 109 (147)
Q Consensus 56 ~~i~~~ef~~~~~-----------------~~~~~~~~f~~-~D~~~G~i~~~el~~~l~~~~~~~~~~~~~ 109 (147)
..++.+.|..++. ....-...|+. ++...+.|+.++|.+.-.. .+++|..|+.
T Consensus 382 K~L~~~~f~~IVdG~s~tgKcPPQViAAAqyF~~hpd~W~~l~~g~~~~v~k~dflq~ass-~m~LT~~Elk 452 (624)
T PF05819_consen 382 KNLSLEDFKQIVDGDSKTGKCPPQVIAAAQYFVDHPDEWKQLYGGPSDKVSKEDFLQVASS-SMHLTAPELK 452 (624)
T ss_pred cccCHHHHHhHhcCccccCCCCHHHHHHHHHHHhChHHHHHhcCCCccccchhHHHHHHHh-hcccChHHHH
Confidence 5678888887762 11112222322 3556788888888777654 2344544433
No 219
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=40.96 E-value=49 Score=19.03 Aligned_cols=33 Identities=24% Similarity=0.177 Sum_probs=18.2
Q ss_pred CCCceeHH-------HHHHHHHHcCCCCCHHHHHHHHHhc
Q 032093 83 GRGYLVPD-------NVYEALVKIGFSLDSPAFYTVCESF 115 (147)
Q Consensus 83 ~~G~i~~~-------el~~~l~~~~~~~~~~~~~~~~~~~ 115 (147)
.=|.|+.+ |+-.+|+++|..+++++..-+-.+.
T Consensus 6 klGKls~d~y~~qkvEIL~ALrkLge~Ls~eE~~FL~~~~ 45 (78)
T PF06384_consen 6 KLGKLSKDVYTQQKVEILTALRKLGEKLSPEEEAFLEAHS 45 (78)
T ss_dssp -S-SSHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHTH
T ss_pred ccCCCcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHh
Confidence 34555554 4667888899999998876665543
No 220
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=40.07 E-value=53 Score=16.56 Aligned_cols=41 Identities=12% Similarity=0.353 Sum_probs=26.8
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 032093 89 PDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCI 133 (147)
Q Consensus 89 ~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l~ 133 (147)
.+|...+|..+|+ ++.++..++..... .+..+.++.++.-+
T Consensus 3 ~~d~~~AL~~LGy--~~~e~~~av~~~~~--~~~~~~e~~ik~aL 43 (47)
T PF07499_consen 3 LEDALEALISLGY--SKAEAQKAVSKLLE--KPGMDVEELIKQAL 43 (47)
T ss_dssp HHHHHHHHHHTTS---HHHHHHHHHHHHH--STTS-HHHHHHHHH
T ss_pred HHHHHHHHHHcCC--CHHHHHHHHHHhhc--CCCCCHHHHHHHHH
Confidence 3567788888884 47888888888753 34466677665443
No 221
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=40.07 E-value=58 Score=19.23 Aligned_cols=16 Identities=31% Similarity=0.302 Sum_probs=11.4
Q ss_pred CCcccHHHHHHHHHcC
Q 032093 19 TGSIAAAQLKHAFAVG 34 (147)
Q Consensus 19 ~g~i~~~e~~~~l~~~ 34 (147)
+|.++..|...+.+.+
T Consensus 16 DG~v~~~E~~~i~~~l 31 (111)
T cd07176 16 DGDIDDAELQAIEALL 31 (111)
T ss_pred ccCCCHHHHHHHHHHH
Confidence 6788888877666654
No 222
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=39.89 E-value=87 Score=23.33 Aligned_cols=12 Identities=42% Similarity=0.573 Sum_probs=5.3
Q ss_pred CcccHHHHHHHH
Q 032093 56 GTMSFEEFVELN 67 (147)
Q Consensus 56 ~~i~~~ef~~~~ 67 (147)
|.|+.+|=+..+
T Consensus 301 G~itReeal~~v 312 (343)
T TIGR03573 301 GRITREEAIELV 312 (343)
T ss_pred CCCCHHHHHHHH
Confidence 444444444433
No 223
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=39.52 E-value=93 Score=19.28 Aligned_cols=41 Identities=10% Similarity=0.011 Sum_probs=32.5
Q ss_pred HhhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHhhc
Q 032093 11 FDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYD 51 (147)
Q Consensus 11 F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 51 (147)
|.+.--.++..+|.+++..+|...|..+....+..++..+.
T Consensus 7 yll~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~ 47 (113)
T PLN00138 7 YLLAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVK 47 (113)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHc
Confidence 33333345567999999999999999999999988888875
No 224
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=39.32 E-value=59 Score=19.26 Aligned_cols=48 Identities=17% Similarity=0.237 Sum_probs=26.1
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhcCC-----CCCCcccHHHHHHHHHHhhh
Q 032093 90 DNVYEALVKIGFSLDSPAFYTVCESFDQ-----NKNGRLRLDDFISLCIFLQS 137 (147)
Q Consensus 90 ~el~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~eF~~~l~~~~~ 137 (147)
..++.+|+.-|..++.+++..++...+. -..|.|+.+.+.+.=..+..
T Consensus 12 ~~Lk~lLk~rGi~v~~~~L~~f~~~i~~~~PWF~~eG~l~~~~W~kvG~~l~~ 64 (90)
T PF02337_consen 12 SILKHLLKERGIRVKKKDLINFLSFIDKVCPWFPEEGTLDLDNWKKVGEELKR 64 (90)
T ss_dssp HHHHHHHHCCT----HHHHHHHHHHHHHHTT-SS--SS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCeeecHHHHHHHHHHHHHhCCCCCCCCCcCHHHHHHHHHHHHH
Confidence 3455666666778888877777666432 45667888888766555443
No 225
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=39.30 E-value=17 Score=18.94 Aligned_cols=39 Identities=8% Similarity=0.229 Sum_probs=21.9
Q ss_pred HHhhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHh
Q 032093 10 WFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRM 49 (147)
Q Consensus 10 ~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~ 49 (147)
+|..+...+++.+|..|+...+.. ..+.....++++++.
T Consensus 11 I~dii~~~g~~~ls~~eia~~l~~-~~p~~~~~L~RimR~ 49 (51)
T PF08100_consen 11 IPDIIHNAGGGPLSLSEIAARLPT-SNPSAPPMLDRIMRL 49 (51)
T ss_dssp HHHHHHHHTTS-BEHHHHHHTSTC-T-TTHHHHHHHHHHH
T ss_pred cHHHHHHcCCCCCCHHHHHHHcCC-CCcchHHHHHHHHHH
Confidence 444454444688999888877764 222334456666553
No 226
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=39.12 E-value=52 Score=16.59 Aligned_cols=21 Identities=14% Similarity=0.370 Sum_probs=15.7
Q ss_pred eHHHHHHHHHHcCCCCCHHHH
Q 032093 88 VPDNVYEALVKIGFSLDSPAF 108 (147)
Q Consensus 88 ~~~el~~~l~~~~~~~~~~~~ 108 (147)
+.+++..+-+..|+.+|.+++
T Consensus 28 ~~~e~~~lA~~~Gy~ft~~el 48 (49)
T PF07862_consen 28 NPEEVVALAREAGYDFTEEEL 48 (49)
T ss_pred CHHHHHHHHHHcCCCCCHHHh
Confidence 667777777778888877664
No 227
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=38.01 E-value=28 Score=23.49 Aligned_cols=46 Identities=13% Similarity=0.143 Sum_probs=35.2
Q ss_pred cHHHHHHHHhhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHH
Q 032093 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIR 48 (147)
Q Consensus 3 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 48 (147)
....++++|..||+..--..+.+++..++..-++--+...++.++.
T Consensus 51 Kr~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~IIRnr~KI~Avi~ 96 (179)
T TIGR00624 51 KRENYRRAFSGFDIVKVARMTDADVERLLQDDGIIRNRGKIEATIA 96 (179)
T ss_pred hHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHHHH
Confidence 4567889999999988888888999998887777655655555444
No 228
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=37.48 E-value=62 Score=18.25 Aligned_cols=14 Identities=21% Similarity=0.266 Sum_probs=6.9
Q ss_pred CCceeHHHHHHHHH
Q 032093 84 RGYLVPDNVYEALV 97 (147)
Q Consensus 84 ~G~i~~~el~~~l~ 97 (147)
.|++..+||..++.
T Consensus 28 ~Gkv~~ee~n~~~e 41 (75)
T TIGR02675 28 SGKLRGEEINSLLE 41 (75)
T ss_pred cCcccHHHHHHHHH
Confidence 45555555555443
No 229
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=37.33 E-value=1.2e+02 Score=20.47 Aligned_cols=14 Identities=21% Similarity=0.534 Sum_probs=6.6
Q ss_pred CCCCcccHHHHHHH
Q 032093 53 DRNGTMSFEEFVEL 66 (147)
Q Consensus 53 ~~~~~i~~~ef~~~ 66 (147)
|.+|.++.++++..
T Consensus 29 d~~G~v~v~~Ll~~ 42 (179)
T PRK00819 29 DEEGWVDIDALIEA 42 (179)
T ss_pred CCCCCEEHHHHHHH
Confidence 34455555544443
No 230
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=36.78 E-value=45 Score=15.64 Aligned_cols=18 Identities=22% Similarity=0.311 Sum_probs=13.1
Q ss_pred cccHHHHHHHHHcCCCCC
Q 032093 21 SIAAAQLKHAFAVGNLDF 38 (147)
Q Consensus 21 ~i~~~e~~~~l~~~~~~~ 38 (147)
.++..|++..++..|++.
T Consensus 3 ~l~v~eLk~~l~~~gL~~ 20 (35)
T PF02037_consen 3 KLTVAELKEELKERGLST 20 (35)
T ss_dssp TSHHHHHHHHHHHTTS-S
T ss_pred cCcHHHHHHHHHHCCCCC
Confidence 467788888888887743
No 231
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=36.37 E-value=51 Score=15.29 Aligned_cols=18 Identities=6% Similarity=0.373 Sum_probs=10.3
Q ss_pred CcccHHHHHHHHHHhhhh
Q 032093 121 GRLRLDDFISLCIFLQSA 138 (147)
Q Consensus 121 ~~i~~~eF~~~l~~~~~~ 138 (147)
|.|++++++.+..++...
T Consensus 3 ~~i~~~~~~d~a~rv~~f 20 (33)
T PF09373_consen 3 GTISKEEYLDMASRVNNF 20 (33)
T ss_pred ceecHHHHHHHHHHHHHH
Confidence 456666666666555443
No 232
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=34.34 E-value=29 Score=23.04 Aligned_cols=44 Identities=14% Similarity=0.184 Sum_probs=29.4
Q ss_pred HHHHHHccccc-CCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhc
Q 032093 71 LKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESF 115 (147)
Q Consensus 71 ~~~~~~f~~~D-~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 115 (147)
.++..+++.+- .+...++..+|...+ .+|..+|++++......+
T Consensus 85 ~Ql~AA~~Yl~~~~~~~~d~~~Fe~~c-GVGV~VT~E~I~~~V~~~ 129 (164)
T PF04558_consen 85 LQLDAALKYLKSNPSEPIDVAEFEKAC-GVGVVVTPEQIEAAVEKY 129 (164)
T ss_dssp HHHHHHHHHHHHHGG-G--HHHHHHTT-TTT----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHc-CCCeEECHHHHHHHHHHH
Confidence 67888888887 355689999998888 457789999988887776
No 233
>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]
Probab=34.31 E-value=1.1e+02 Score=18.76 Aligned_cols=42 Identities=14% Similarity=0.279 Sum_probs=34.5
Q ss_pred CceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHH
Q 032093 85 GYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISL 131 (147)
Q Consensus 85 G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eF~~~ 131 (147)
..|+.+.++.++...|..+.+..++.++..+. .++.++-+.-
T Consensus 15 kei~e~~l~~vl~aaGveve~~r~k~lvaaLe-----g~~idE~i~~ 56 (109)
T COG2058 15 KEITEDNLKSVLEAAGVEVEEARAKALVAALE-----GVDIDEVIKN 56 (109)
T ss_pred CcCCHHHHHHHHHHcCCCccHHHHHHHHHHhc-----CCCHHHHHHH
Confidence 38999999999999999999999999998885 2466665543
No 234
>PHA01351 putative minor structural protein
Probab=34.13 E-value=2.6e+02 Score=23.58 Aligned_cols=48 Identities=15% Similarity=0.288 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHccccc-C-CCCceeHHHHHHHHHHcCCCCCHHHHHHHHHh
Q 032093 65 ELNKFLLKVQHAFSDLE-R-GRGYLVPDNVYEALVKIGFSLDSPAFYTVCES 114 (147)
Q Consensus 65 ~~~~~~~~~~~~f~~~D-~-~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~ 114 (147)
......-.+....+.+. . ++-.||..++.+-|+++| +++.-++.++.+
T Consensus 521 ~~~~n~a~iesqIK~LQ~qL~nF~IS~QD~EkELKkLg--~s~alIqaiI~E 570 (1070)
T PHA01351 521 ESELQFAQLQNQLKEYQFKLNNFLISPQDLEKDLKHLG--FDSAIISALIYE 570 (1070)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHcC--CCHHHHHHHHHH
Confidence 33333444444445554 3 677899999999999887 445555555443
No 235
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=33.93 E-value=88 Score=18.28 Aligned_cols=30 Identities=20% Similarity=0.292 Sum_probs=22.8
Q ss_pred ccHHHHHHHHHcCCCCCCHHHHHHHHHhhc
Q 032093 22 IAAAQLKHAFAVGNLDFSLSVVQQMIRMYD 51 (147)
Q Consensus 22 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 51 (147)
|+..++..+.+...+.++++++..+...+.
T Consensus 1 i~~~~v~~lA~La~L~l~eee~~~~~~~l~ 30 (93)
T TIGR00135 1 ISDEEVKHLAKLARLELSEEEAESFAGDLD 30 (93)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 467788888888788888888877766543
No 236
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=33.86 E-value=1.2e+02 Score=18.69 Aligned_cols=47 Identities=15% Similarity=0.199 Sum_probs=32.4
Q ss_pred hhCCCCCCcccHHHHHHHHHc----------CCCCCCHHHHHHHHHhhcCCCCCccc
Q 032093 13 RVDSEKTGSIAAAQLKHAFAV----------GNLDFSLSVVQQMIRMYDFDRNGTMS 59 (147)
Q Consensus 13 ~~D~~~~g~i~~~e~~~~l~~----------~~~~~~~~~~~~~~~~~d~~~~~~i~ 59 (147)
.||+..+-+||.++++..... -|-.++...+-+|+..-..++..-++
T Consensus 11 LYDT~tS~YITLedi~~lV~~g~~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp 67 (107)
T TIGR01848 11 LYDTETSSYVTLEDIRDLVREGREFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLS 67 (107)
T ss_pred ccCCCccceeeHHHHHHHHHCCCeEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCC
Confidence 678999999999999999885 24456666666666655444444444
No 237
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=33.53 E-value=75 Score=16.44 Aligned_cols=29 Identities=17% Similarity=0.332 Sum_probs=20.5
Q ss_pred CCcccHHHHHHHHHcCCCCCCHHHHHHHHHhhcC
Q 032093 19 TGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDF 52 (147)
Q Consensus 19 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~ 52 (147)
.|.++..+|+..+. .|...+-.++..+|.
T Consensus 8 ~~~itv~~~rd~lg-----~sRK~ai~lLE~lD~ 36 (50)
T PF09107_consen 8 NGEITVAEFRDLLG-----LSRKYAIPLLEYLDR 36 (50)
T ss_dssp TSSBEHHHHHHHHT-----S-HHHHHHHHHHHHH
T ss_pred CCcCcHHHHHHHHC-----ccHHHHHHHHHHHhc
Confidence 57888888888774 566666677777664
No 238
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=33.45 E-value=1.6e+02 Score=23.08 Aligned_cols=61 Identities=15% Similarity=0.277 Sum_probs=40.4
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 032093 5 AVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNK 68 (147)
Q Consensus 5 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 68 (147)
+.++.+-..+|.|.+|.|+.+|--.+|+.- +.+....-.+-- .+. ..+..|+.++....|.
T Consensus 68 EAir~iHrqmDDD~nG~Id~~ESdeFlrEd-mky~~~~~kr~~-~fH-~dD~~ItVedLWeaW~ 128 (575)
T KOG4403|consen 68 EAIRDIHRQMDDDHNGSIDVEESDEFLRED-MKYRDSTRKRSE-KFH-GDDKHITVEDLWEAWK 128 (575)
T ss_pred HHHHHHHHhcccccCCCcccccchHHHHHH-hhcccchhhhhh-hcc-CCccceeHHHHHHHHH
Confidence 456777888999999999999988888863 222222222211 222 3567899988887664
No 239
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=33.33 E-value=97 Score=17.67 Aligned_cols=44 Identities=20% Similarity=0.369 Sum_probs=32.6
Q ss_pred ccHHHHHHHHHcCCCCCCHHHHHHHHHhhcCC-CCCcccHHHHHHHH
Q 032093 22 IAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFD-RNGTMSFEEFVELN 67 (147)
Q Consensus 22 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~-~~~~i~~~ef~~~~ 67 (147)
-...++..+|. |.+.+.+.+...+...+.. --+.++.+|++.++
T Consensus 42 ~~i~~le~~L~--G~~~~~~~i~~~l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 42 EDIEELEEALI--GCPYDREAIKEALNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp CCHHHHHHHHT--TCBSSHHHHHHHHHHCHGGGTCCTHHHHHHHHHH
T ss_pred hHHHHHHHHHH--hcCCCHHHHHHHHHHhCHhhccccCCHHHHHHhC
Confidence 34678888774 8888999999999888543 33578888887753
No 240
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=33.32 E-value=77 Score=17.17 Aligned_cols=34 Identities=18% Similarity=0.146 Sum_probs=19.4
Q ss_pred eeHHHHHHHHH-HcCCCCCHHHHHHHHHhcCCCCC
Q 032093 87 LVPDNVYEALV-KIGFSLDSPAFYTVCESFDQNKN 120 (147)
Q Consensus 87 i~~~el~~~l~-~~~~~~~~~~~~~~~~~~~~~~~ 120 (147)
++.+++.+.+. .....++.+++..-.+.++.|.-
T Consensus 4 ~~~~~v~~~l~t~~~~GLs~~ev~~r~~~~G~N~l 38 (69)
T PF00690_consen 4 LSVEEVLKRLNTSSSQGLSSEEVEERRKKYGPNEL 38 (69)
T ss_dssp SSHHHHHHHHTTBTSSBBTHHHHHHHHHHHSSSST
T ss_pred CCHHHHHHHHCcCCCCCCCHHHHHHHHHhcccccc
Confidence 34455555554 23334667777777777766554
No 241
>TIGR03685 L21P_arch 50S ribosomal protein L12P. This model represents the L12P protein of the large (50S) subunit of the archaeal ribosome.
Probab=33.14 E-value=1.2e+02 Score=18.54 Aligned_cols=47 Identities=13% Similarity=0.297 Sum_probs=35.7
Q ss_pred cCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 032093 81 ERGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCI 133 (147)
Q Consensus 81 D~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l~ 133 (147)
+.|. .||.+.+..+|...|..+.+..+..+...+.. .+.++.+.-..
T Consensus 12 ~~g~-~iT~e~I~~IL~AAGv~ve~~~~~~la~~L~g-----k~i~eli~~~~ 58 (105)
T TIGR03685 12 SAGK-EINEENLKAVLEAAGVEVDEARVKALVAALEG-----VNIEEAIKKAA 58 (105)
T ss_pred hcCC-CCCHHHHHHHHHHhCCcccHHHHHHHHHHHcC-----CCHHHHHHhhh
Confidence 3344 89999999999999999988889999888852 44555554333
No 242
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=32.40 E-value=1.7e+02 Score=20.23 Aligned_cols=38 Identities=8% Similarity=0.148 Sum_probs=22.2
Q ss_pred CCCceeHHHHHHHHHHcC---CCCCHHHHHHHHHhcCCCCC
Q 032093 83 GRGYLVPDNVYEALVKIG---FSLDSPAFYTVCESFDQNKN 120 (147)
Q Consensus 83 ~~G~i~~~el~~~l~~~~---~~~~~~~~~~~~~~~~~~~~ 120 (147)
+.|.|+..|+...+.+.. ..++++++...++.+..-+.
T Consensus 110 ~GGii~L~dl~~~~nr~R~g~~lISp~Di~~A~~~l~~lg~ 150 (223)
T PF04157_consen 110 NGGIISLSDLYCRYNRARGGSELISPEDILRACKLLEVLGL 150 (223)
T ss_dssp TTSEEEHHHHHHHHHHCTTTSST--HHHHHHHHHHHCCCTS
T ss_pred CCCEEEHHHHHHHHHHhcccCCCcCHHHHHHHHHHHHHcCC
Confidence 456777777777776642 24667777777666655443
No 243
>PF09808 SNAPc_SNAP43: Small nuclear RNA activating complex (SNAPc), subunit SNAP43; InterPro: IPR019188 Members of this family are part of the SNAPc complex required for the transcription of both RNA polymerase II and III small-nuclear RNA genes. They bind to the proximal sequence element (PSE), a non-TATA-box basal promoter element common to these 2 types of genes. Furthermore, they also recruit TBP and BRF2 to the U6 snRNA TATA box. SNAPc consists of at least four stably associated subunits, SNAP43, SNAP45, SNAP50, and SNAP190. None of the three small subunits can bind to the PSE on their own [].
Probab=32.33 E-value=1.2e+02 Score=20.44 Aligned_cols=29 Identities=14% Similarity=0.375 Sum_probs=21.4
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHHH
Q 032093 41 SVVQQMIRMYDFDRNGTMSFEEFVELNKFLL 71 (147)
Q Consensus 41 ~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~ 71 (147)
.++..++.++... +.++|++|..+|....
T Consensus 4 ~D~~~Ll~~F~~~--~~~~F~~F~~~W~~~~ 32 (194)
T PF09808_consen 4 EDIDELLQRFQQA--ESVRFEDFKRLWREMK 32 (194)
T ss_pred HHHHHHHHHHHHc--CCCCHHHHHHHHHHCC
Confidence 4567777777533 6799999999998654
No 244
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=31.32 E-value=30 Score=23.50 Aligned_cols=46 Identities=13% Similarity=0.189 Sum_probs=33.2
Q ss_pred cHHHHHHHHhhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHH
Q 032093 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIR 48 (147)
Q Consensus 3 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 48 (147)
....++++|..||++.--..+.+++..++..-++--+...++.++.
T Consensus 52 Kre~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~IIRnr~KI~Avi~ 97 (187)
T PRK10353 52 KRENYRACFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIG 97 (187)
T ss_pred HHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCchhHHhHHHHHHHHH
Confidence 4567888999999888777888888888887666545555544443
No 245
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=30.89 E-value=2.4e+02 Score=21.41 Aligned_cols=83 Identities=13% Similarity=0.117 Sum_probs=52.3
Q ss_pred CCCCcccHHHHHHHHHcCCC----------CCCHHH-----HHHHHHhhcCCCCCcccHHHHHHHH------HHHHHHHH
Q 032093 17 EKTGSIAAAQLKHAFAVGNL----------DFSLSV-----VQQMIRMYDFDRNGTMSFEEFVELN------KFLLKVQH 75 (147)
Q Consensus 17 ~~~g~i~~~e~~~~l~~~~~----------~~~~~~-----~~~~~~~~d~~~~~~i~~~ef~~~~------~~~~~~~~ 75 (147)
+.+--|+.+.+..++..+.. .++.+. +..++..+|..+.|.++.-.....+ +...+++.
T Consensus 71 ~~~tei~~srlea~lstif~qlnkrL~ss~~id~e~sislllaflLaA~ds~~~g~~~vfavkialatlc~gk~~dklry 150 (434)
T KOG4301|consen 71 DPNTEINVSRLEAVLSTIFYQLNKRLPSSHQIDVEQSISLLLAFLLAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRY 150 (434)
T ss_pred CCcchhhhhHHHHHHHHHHHhhhccCcccccccHHHHHHHHHHHHHhhcCccCCCCceeecchhhhhhhccchHHHHHHH
Confidence 34455666666666654311 122221 2345666788888877644333222 23588999
Q ss_pred HcccccCCCCceeHHHHHHHHHHc
Q 032093 76 AFSDLERGRGYLVPDNVYEALVKI 99 (147)
Q Consensus 76 ~f~~~D~~~G~i~~~el~~~l~~~ 99 (147)
+|....+.+|.+....+.+++...
T Consensus 151 Ifs~isds~gim~~i~~~~fl~ev 174 (434)
T KOG4301|consen 151 IFSLISDSRGIMQEIQRDQFLHEV 174 (434)
T ss_pred HHHHHccchHHHHHHHHHHHHHHH
Confidence 999999889999988888888763
No 246
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=30.73 E-value=2e+02 Score=23.70 Aligned_cols=73 Identities=23% Similarity=0.264 Sum_probs=47.1
Q ss_pred CCcccHHHHHHHHHcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH--------------HHHHHHccccc-CC
Q 032093 19 TGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL--------------LKVQHAFSDLE-RG 83 (147)
Q Consensus 19 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~--------------~~~~~~f~~~D-~~ 83 (147)
+| ++.+++. .....-+..++.++..+|. .+|.++-+++..+.... +....+++..| +.
T Consensus 2 ~~-~~~~~~~-----~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (646)
T KOG0039|consen 2 EG-ISFQELK-----ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDH 74 (646)
T ss_pred CC-cchhhhc-----ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccc
Confidence 45 7777777 3334445667777777775 77777777776654321 33455566666 56
Q ss_pred CCceeHHHHHHHHHH
Q 032093 84 RGYLVPDNVYEALVK 98 (147)
Q Consensus 84 ~G~i~~~el~~~l~~ 98 (147)
.|++...++..++..
T Consensus 75 ~~y~~~~~~~~ll~~ 89 (646)
T KOG0039|consen 75 KGYITNEDLEILLLQ 89 (646)
T ss_pred cceeeecchhHHHHh
Confidence 678888888777754
No 247
>PF07553 Lipoprotein_Ltp: Host cell surface-exposed lipoprotein; InterPro: IPR011434 This domain is found as 1-3 copies in a small family of proteins of unknown function.
Probab=29.84 E-value=88 Score=16.09 Aligned_cols=31 Identities=10% Similarity=0.148 Sum_probs=24.6
Q ss_pred CCceeHHHHHHHHHH-cCCCCCHHHHHHHHHh
Q 032093 84 RGYLVPDNVYEALVK-IGFSLDSPAFYTVCES 114 (147)
Q Consensus 84 ~G~i~~~el~~~l~~-~~~~~~~~~~~~~~~~ 114 (147)
.+.+|++.+..-|.. .|..+|+++++-.+.+
T Consensus 16 ~~~~Sk~~l~~QL~se~ge~Ft~e~A~YAv~~ 47 (48)
T PF07553_consen 16 TMHMSKQGLYDQLTSEYGEGFTEEEAQYAVDH 47 (48)
T ss_pred hccCCHHHHHHHHHhhcccCCCHHHHHHHHHc
Confidence 567999999988876 5788999988876654
No 248
>cd05831 Ribosomal_P1 Ribosomal protein P1. This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and
Probab=29.75 E-value=1.3e+02 Score=18.17 Aligned_cols=43 Identities=14% Similarity=0.165 Sum_probs=32.5
Q ss_pred CCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHH
Q 032093 83 GRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFIS 130 (147)
Q Consensus 83 ~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eF~~ 130 (147)
.+-.+|.+++..++...|..+.+..+..+.+.+. ..+..+++.
T Consensus 14 ~~~~~Tae~I~~ilkAaGveve~~~~~~f~~~L~-----gk~i~elIa 56 (103)
T cd05831 14 DGIEITADNINALLKAAGVNVEPYWPGLFAKALE-----GKDIKDLLS 56 (103)
T ss_pred CCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHc-----CCCHHHHhh
Confidence 4457999999999999999888888887777774 244555553
No 249
>PRK15121 right oriC-binding transcriptional activator; Provisional
Probab=29.44 E-value=2.2e+02 Score=20.44 Aligned_cols=98 Identities=8% Similarity=0.135 Sum_probs=63.4
Q ss_pred CccHHHHHHHHhhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHH----
Q 032093 1 MENTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFLLKVQHA---- 76 (147)
Q Consensus 1 ~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~---- 76 (147)
|.+...+.++...+..+-+..++.+++...+. +|...+.++|+..- .+++.+|+...........+
T Consensus 1 ~~~~~~i~~~~~~i~~~~~~~~~l~~lA~~~~-----~S~~~l~r~F~~~~-----g~s~~~yi~~~Rl~~A~~~L~~~~ 70 (289)
T PRK15121 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAG-----YSKWHLQRMFKDVT-----GHAIGAYIRARRLSKAAVALRLTS 70 (289)
T ss_pred CchHHHHHHHHHHHHhcccCCCCHHHHHHHHC-----cCHHHHHHHHHHHH-----CcCHHHHHHHHHHHHHHHHHHcCC
Confidence 34556677777777766667799999988654 77888999998763 26778888765533222221
Q ss_pred ccccc-C-CCCceeHHHHHHHHHH-cCCCCCHHHHHH
Q 032093 77 FSDLE-R-GRGYLVPDNVYEALVK-IGFSLDSPAFYT 110 (147)
Q Consensus 77 f~~~D-~-~~G~i~~~el~~~l~~-~~~~~~~~~~~~ 110 (147)
....+ - .-|+=+.+.|.+++++ .| +++.+...
T Consensus 71 ~~i~~iA~~~Gf~s~~~f~r~Fk~~~g--~sP~~~r~ 105 (289)
T PRK15121 71 RPILDIALQYRFDSQQTFTRAFKKQFA--QTPALYRR 105 (289)
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHC--cCHHHHHh
Confidence 12223 2 5688888888888866 34 45555443
No 250
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=29.39 E-value=1.7e+02 Score=19.23 Aligned_cols=15 Identities=20% Similarity=0.543 Sum_probs=8.2
Q ss_pred CCCcccHHHHHHHHH
Q 032093 54 RNGTMSFEEFVELNK 68 (147)
Q Consensus 54 ~~~~i~~~ef~~~~~ 68 (147)
.++.|++..|..++.
T Consensus 96 ~n~~i~~~~ff~~lQ 110 (175)
T PF04876_consen 96 TNGLIDIGKFFDILQ 110 (175)
T ss_pred cccceeHHHHHHHHH
Confidence 345566666655553
No 251
>PF09682 Holin_LLH: Phage holin protein (Holin_LLH); InterPro: IPR010026 This entry represents the Bacteriophage LL-H, Orf107, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=28.99 E-value=1.4e+02 Score=18.14 Aligned_cols=33 Identities=24% Similarity=0.247 Sum_probs=23.8
Q ss_pred CCCceeHHH----HHHHHHHcCCCCCHHHHHHHHHhc
Q 032093 83 GRGYLVPDN----VYEALVKIGFSLDSPAFYTVCESF 115 (147)
Q Consensus 83 ~~G~i~~~e----l~~~l~~~~~~~~~~~~~~~~~~~ 115 (147)
++|.--.++ +...|...|.++|+++++.+++..
T Consensus 64 ~~G~~K~~~A~~~v~~~L~~~gi~~t~~~i~~~IEaA 100 (108)
T PF09682_consen 64 GKGEEKKAEAVQYVKERLKKKGIKVTDEQIEGAIEAA 100 (108)
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 366655554 456667789999999999887754
No 252
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.97 E-value=2.3e+02 Score=20.51 Aligned_cols=65 Identities=15% Similarity=0.088 Sum_probs=42.5
Q ss_pred HHHHHHHHhhh-CCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 032093 4 TAVLREWFDRV-DSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNK 68 (147)
Q Consensus 4 ~~~~~~~F~~~-D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 68 (147)
...+...|..+ |++-+..|-.+-+..+...+|..+.+-..--+--.+....-+..+.++|+.-+.
T Consensus 63 ~~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~~ 128 (260)
T KOG3077|consen 63 EKRLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLGAATMCEFSREEFLKGMT 128 (260)
T ss_pred HHHHHHHHHHhcCcccccccChHHHHHHHHHhCCCchhHHHHHHHHHhccchhhhhhHHHHHHHHH
Confidence 34566677666 555556888888999999988876544433222233444557788888888543
No 253
>PF01498 HTH_Tnp_Tc3_2: Transposase; InterPro: IPR002492 Transposase proteins are necessary for efficient DNA transposition. This family includes the amino-terminal region of Tc1, Tc1A, Tc1B and Tc2B transposases of Caenorhabditis elegans. The region encompasses the specific DNA binding and second DNA recognition domains as well as an amino-terminal region of the catalytic domain of Tc3 as described in []. Tc3 is a member of the Tc1/mariner family of transposable elements. This entry also includes histone-lysine N-methyltransferase SETMAR, which is a SET domain and mariner transposase fusion gene-containing protein. This histone methyltransferase has sequence-specific DNA-binding activity and recognises the 19-mer core of the 5'-terminal inverted repeats (TIRs) of the Hsmar1 element. This protein has DNA nicking activity, and has in vivo end joining activity and may mediate genomic integration of foreign DNA [, , , ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated, 0015074 DNA integration; PDB: 3K9K_B 3F2K_B 3K9J_B 1U78_A.
Probab=28.71 E-value=87 Score=17.05 Aligned_cols=33 Identities=15% Similarity=0.256 Sum_probs=18.3
Q ss_pred CCcccHHHHHHHHHcCCCCCCHHHHHHHHHhhc
Q 032093 19 TGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYD 51 (147)
Q Consensus 19 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 51 (147)
+..+|..++...+...|..++...+.+.+....
T Consensus 11 ~p~~s~~~i~~~l~~~~~~vS~~TI~r~L~~~g 43 (72)
T PF01498_consen 11 NPRISAREIAQELQEAGISVSKSTIRRRLREAG 43 (72)
T ss_dssp -----HHHHHHHT---T--S-HHHHHHHHHHT-
T ss_pred CCCCCHHHHHHHHHHccCCcCHHHHHHHHHHcC
Confidence 456899999888877788999999998888754
No 254
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=28.38 E-value=1.3e+02 Score=22.79 Aligned_cols=59 Identities=17% Similarity=0.059 Sum_probs=42.8
Q ss_pred HHhhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q 032093 10 WFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF 69 (147)
Q Consensus 10 ~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 69 (147)
....+|+.+.|.++..-.+.+|..+..+.-.+.++.|+..+. +.+|-+.+..|..+...
T Consensus 115 lLaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~is-ds~gim~~i~~~~fl~e 173 (434)
T KOG4301|consen 115 LLAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLIS-DSRGIMQEIQRDQFLHE 173 (434)
T ss_pred HHhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHHc-cchHHHHHHHHHHHHHH
Confidence 345678999999999888888887755544566777777775 66677776666666543
No 255
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=27.98 E-value=1.3e+02 Score=17.54 Aligned_cols=30 Identities=17% Similarity=0.298 Sum_probs=23.2
Q ss_pred cccHHHHHHHHHcCCCCCCHHHHHHHHHhh
Q 032093 21 SIAAAQLKHAFAVGNLDFSLSVVQQMIRMY 50 (147)
Q Consensus 21 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 50 (147)
.|+.++++.+.+...+.++++++..+...+
T Consensus 2 ~i~~e~i~~la~La~l~l~~ee~~~~~~~l 31 (95)
T PRK00034 2 AITREEVKHLAKLARLELSEEELEKFAGQL 31 (95)
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 367788888888888888888887776654
No 256
>PF08812 YtxC: YtxC-like family; InterPro: IPR014199 This uncharacterised protein is one of a number of proteins conserved in all known endospore-forming Firmicutes (low-GC Gram-positive bacteria), including Carboxydothermus hydrogenoformans, and it is not found in non-endospore forming species. It is uniformly distributed in the mother cell cytoplasm in Bacillus subtilis [].
Probab=27.77 E-value=94 Score=21.65 Aligned_cols=42 Identities=5% Similarity=0.003 Sum_probs=28.3
Q ss_pred HHcccccCCCCceeHHHHHHHHHH-cCCCCCHHH--HHHHHHhcC
Q 032093 75 HAFSDLERGRGYLVPDNVYEALVK-IGFSLDSPA--FYTVCESFD 116 (147)
Q Consensus 75 ~~f~~~D~~~G~i~~~el~~~l~~-~~~~~~~~~--~~~~~~~~~ 116 (147)
..|..+|.+...|+.+++..++.. .+.+++.++ +..++..++
T Consensus 147 g~f~l~D~~~~~i~~~~~~~~~~~~~~~~i~~eD~lIS~LItiaP 191 (221)
T PF08812_consen 147 GSFILYDEEGKPISNEELEEYIDELFDQEINYEDLLISPLITIAP 191 (221)
T ss_pred CcEEEEcCCCCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHHHhCC
Confidence 478888877778999988888877 333444433 556666554
No 257
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=27.44 E-value=60 Score=19.56 Aligned_cols=61 Identities=18% Similarity=0.177 Sum_probs=35.2
Q ss_pred HcccccCCCCceeHHHHHHHHHHcCCCCCHHHH---HHHHHhcCCCCCCcccHHHHHHHHHHhhhhh
Q 032093 76 AFSDLERGRGYLVPDNVYEALVKIGFSLDSPAF---YTVCESFDQNKNGRLRLDDFISLCIFLQSAR 139 (147)
Q Consensus 76 ~f~~~D~~~G~i~~~el~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~eF~~~l~~~~~~~ 139 (147)
.|...|=..-.++.+++..++...|. .+-+ ...++.++.+....++-++.+..+...|.+.
T Consensus 25 ~~~~~di~~~p~s~~eL~~~l~~~g~---~~li~~~~~~yk~l~l~~~~~~s~~e~~~~l~~~p~Li 88 (105)
T cd03035 25 AYTFHDYRKDGLDAATLERWLAKVGW---ETLLNKRGTTWRKLDDAQKAALDAAKAIALMLEHPSLI 88 (105)
T ss_pred CeEEEecccCCCCHHHHHHHHHHhCh---HHHHccCchHHHhCChhhhccCCHHHHHHHHHhCcCee
Confidence 44444423456888888888887762 1111 1223333333224577788888888777643
No 258
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=27.03 E-value=1.7e+02 Score=18.46 Aligned_cols=30 Identities=13% Similarity=0.210 Sum_probs=13.9
Q ss_pred cccHHHHHHHHHcC-CCCCCHHHHHHHHHhh
Q 032093 21 SIAAAQLKHAFAVG-NLDFSLSVVQQMIRMY 50 (147)
Q Consensus 21 ~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~ 50 (147)
.|+.+.+..++.+. |..++...+.-++.++
T Consensus 50 eid~e~~y~l~~~~d~~~LT~~Qi~Yl~~~~ 80 (122)
T PF06648_consen 50 EIDVEDMYNLFGAVDGLKLTRSQIDYLYNRV 80 (122)
T ss_pred CCCHHHHHHHHhcccHhhcCHHHHHHHHHHH
Confidence 44455555544443 3444444444444443
No 259
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=26.78 E-value=1.1e+02 Score=16.08 Aligned_cols=30 Identities=17% Similarity=0.045 Sum_probs=15.7
Q ss_pred CCCceeHHHHHHHHHHcCCCCCHHHHHHHH
Q 032093 83 GRGYLVPDNVYEALVKIGFSLDSPAFYTVC 112 (147)
Q Consensus 83 ~~G~i~~~el~~~l~~~~~~~~~~~~~~~~ 112 (147)
..|.|+.+||..-+...-.--+..++..++
T Consensus 20 a~GrL~~~Ef~~R~~~a~~A~t~~eL~~l~ 49 (53)
T PF08044_consen 20 AEGRLSLDEFDERLDAAYAARTRGELDALF 49 (53)
T ss_pred HCCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 566666666666555443333344444443
No 260
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with JmjC (see IPR003347 from INTERPRO).; PDB: 2XML_A 2W2I_C 3DXT_A 3DXU_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=26.62 E-value=58 Score=15.41 Aligned_cols=17 Identities=12% Similarity=0.290 Sum_probs=7.7
Q ss_pred cHHHHHHHHHHhhhhhh
Q 032093 124 RLDDFISLCIFLQSARY 140 (147)
Q Consensus 124 ~~~eF~~~l~~~~~~~~ 140 (147)
|.+||...+..+.+.+.
T Consensus 6 t~eEF~dp~~yi~~i~~ 22 (34)
T PF02375_consen 6 TMEEFKDPIKYISSIEP 22 (34)
T ss_dssp -HHHHS-HHHHHHHHHH
T ss_pred CHHHHhCHHHHHHHHHH
Confidence 34555555555555443
No 261
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=26.60 E-value=1.2e+02 Score=16.41 Aligned_cols=13 Identities=23% Similarity=0.112 Sum_probs=6.1
Q ss_pred ceeHHHHHHHHHH
Q 032093 86 YLVPDNVYEALVK 98 (147)
Q Consensus 86 ~i~~~el~~~l~~ 98 (147)
.++.+.++.+|+-
T Consensus 11 sl~l~RIh~mLkm 23 (60)
T PF08672_consen 11 SLPLDRIHSMLKM 23 (60)
T ss_dssp SEEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHh
Confidence 3444444444443
No 262
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.46 E-value=2.5e+02 Score=20.27 Aligned_cols=65 Identities=9% Similarity=0.192 Sum_probs=39.5
Q ss_pred HHHHHHccccc-C-CCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHh
Q 032093 71 LKVQHAFSDLE-R-GRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFL 135 (147)
Q Consensus 71 ~~~~~~f~~~D-~-~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l~~~ 135 (147)
..+...|..|- . .+..|..+-+.++++.+|+...+-.+-.+.-.+....-+..+.++|+.-+..+
T Consensus 64 ~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~~~l 130 (260)
T KOG3077|consen 64 KRLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLGAATMCEFSREEFLKGMTAL 130 (260)
T ss_pred HHHHHHHHHhcCcccccccChHHHHHHHHHhCCCchhHHHHHHHHHhccchhhhhhHHHHHHHHHHc
Confidence 34555555554 2 34688888888888888866433333333333444555678888887766553
No 263
>cd05832 Ribosomal_L12p Ribosomal protein L12p. This subfamily includes archaeal L12p, the protein that is functionally equivalent to L7/L12 in bacteria and the P1 and P2 proteins in eukaryotes. L12p is homologous to P1 and P2 but is not homologous to bacterial L7/L12. It is located in the L12 stalk, with proteins L10, L11, and 23S rRNA. L12p is the only protein in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain six copies of L12p (three homodimers), while eukaryotes have four copies (two heterodimers), and bacteria may have four or six copies (two or three homodimers), depending on the species. The organization of proteins within the stalk has been characterized primarily in bacteria, where L7/L12 forms either two or three homodimers and each homodimer binds to the extended C-terminal helix of L10. L7/L12 is attached to the ribosome through L10 and is the only ribosomal protein that does not directly intera
Probab=26.32 E-value=1.6e+02 Score=18.02 Aligned_cols=46 Identities=15% Similarity=0.338 Sum_probs=35.1
Q ss_pred cCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 032093 81 ERGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLC 132 (147)
Q Consensus 81 D~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l 132 (147)
+.|. .||.+.+..+|...|..+.+..+..+...+.. ++.++.+.-.
T Consensus 12 ~~G~-eITae~I~~IL~AAGveVd~~~~~ala~aL~g-----kdIeElIa~~ 57 (106)
T cd05832 12 YAGK-EINEENLKKVLEAAGIEVDEARVKALVAALEE-----VNIDEAIKKA 57 (106)
T ss_pred hcCC-CCCHHHHHHHHHHhCCcccHHHHHHHHHHHcC-----CCHHHHHHhc
Confidence 3344 89999999999999999888888888888852 5555555433
No 264
>PF08640 U3_assoc_6: U3 small nucleolar RNA-associated protein 6; InterPro: IPR013949 This entry represents U3 nucleolar RNA-associated proteins which are involved in nucleolar processing of pre-18S ribosomal RNA [].
Probab=26.22 E-value=1.4e+02 Score=17.26 Aligned_cols=48 Identities=17% Similarity=0.167 Sum_probs=26.8
Q ss_pred CCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhh
Q 032093 83 GRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQ 136 (147)
Q Consensus 83 ~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l~~~~ 136 (147)
..|..|.+|++.++.. -...+.-+..-.......+.|.+|...+..+-
T Consensus 13 ~~~lFt~~EI~~Ivkk------R~~fEy~L~rr~~~~~Dfl~YI~yE~~L~~L~ 60 (83)
T PF08640_consen 13 RKGLFTKEEIREIVKK------RRDFEYKLQRRGKKKSDFLRYIEYEMNLEKLR 60 (83)
T ss_pred HhCCCCHHHHHHHHHH------HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 3577777777777765 23444444444444444555555555555444
No 265
>PF12207 DUF3600: Domain of unknown function (DUF3600); InterPro: IPR022019 This family of proteins is found in bacteria. Proteins in this family are approximately 230 amino acids in length. This domain is the C-terminal of the putative ecf-type sigma factor negative effector. ; PDB: 3FGG_A 3FH3_A.
Probab=26.20 E-value=66 Score=20.98 Aligned_cols=10 Identities=10% Similarity=0.195 Sum_probs=3.6
Q ss_pred eeHHHHHHHH
Q 032093 87 LVPDNVYEAL 96 (147)
Q Consensus 87 i~~~el~~~l 96 (147)
++.+++.+.+
T Consensus 106 lt~~E~d~y~ 115 (162)
T PF12207_consen 106 LTQEEYDQYI 115 (162)
T ss_dssp S-HHHHHHHH
T ss_pred cCHHHHHHHH
Confidence 3334444333
No 266
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=25.89 E-value=1.2e+02 Score=16.34 Aligned_cols=46 Identities=13% Similarity=0.191 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHcccccCCCCceeHHHHHHHHHHcCCCCCHHHHHHH
Q 032093 60 FEEFVELNKFLLKVQHAFSDLERGRGYLVPDNVYEALVKIGFSLDSPAFYTV 111 (147)
Q Consensus 60 ~~ef~~~~~~~~~~~~~f~~~D~~~G~i~~~el~~~l~~~~~~~~~~~~~~~ 111 (147)
+..|+..+..-..++..++.. .+.+++..+.+..|+.+|.+++...
T Consensus 4 l~~Fl~~~~~d~~L~~~l~~~------~~~e~~~~lA~~~Gf~ft~~el~~~ 49 (64)
T TIGR03798 4 LKAFLEKVKTDPDLREKLKAA------EDPEDRVAIAKEAGFEFTGEDLKEA 49 (64)
T ss_pred HHHHHHHHHcCHHHHHHHHHc------CCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 344555554434444444332 4478888888889999999888764
No 267
>PF03352 Adenine_glyco: Methyladenine glycosylase; InterPro: IPR005019 This family of methyladenine glycosylases includes DNA-3-methyladenine glycosylase I (3.2.2.20 from EC) which acts as a base excision repair enzyme by severing the glycosylic bond of numerous damaged bases. The enzyme is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.; GO: 0008725 DNA-3-methyladenine glycosylase I activity, 0006284 base-excision repair; PDB: 2OFI_A 2OFK_A 2JG6_A 4AIA_E 4AI5_C 4AI4_A 1LMZ_A 1P7M_A 1NKU_A.
Probab=25.74 E-value=26 Score=23.59 Aligned_cols=46 Identities=15% Similarity=0.237 Sum_probs=32.8
Q ss_pred cHHHHHHHHhhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHH
Q 032093 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIR 48 (147)
Q Consensus 3 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 48 (147)
....++++|.-||++.--.++.+++..++..-++--+...++.++.
T Consensus 47 Kr~~~r~aF~~Fd~~~vA~~~e~~ie~l~~d~~iIRnr~KI~Avi~ 92 (179)
T PF03352_consen 47 KREAFREAFAGFDPEKVAKMDEEDIERLMQDPGIIRNRRKIRAVIN 92 (179)
T ss_dssp THHHHHHHTGGGHHHHHHT--HHHHHHHTTSTTSS--HHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHcCCHHHHHHHhcCcchhhhHHHHHHHHH
Confidence 4567888999999888778888899988888777666766665554
No 268
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=25.55 E-value=1.5e+02 Score=17.34 Aligned_cols=48 Identities=15% Similarity=0.371 Sum_probs=24.4
Q ss_pred CCcccHHHHHHH---HHcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 032093 19 TGSIAAAQLKHA---FAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNK 68 (147)
Q Consensus 19 ~g~i~~~e~~~~---l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 68 (147)
||.++..|...+ +.... .+......+...+........++.+|...+.
T Consensus 13 DG~v~~~E~~~i~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 63 (106)
T cd07316 13 DGRVSEAEIQAARALMDQMG--LDAEARREAIRLFNEGKESDFGLEEYARQFR 63 (106)
T ss_pred cCCcCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCcCCCCHHHHHHHHH
Confidence 688888775444 44433 3333344444444322222256677766543
No 269
>PHA01351 putative minor structural protein
Probab=25.49 E-value=3.6e+02 Score=22.86 Aligned_cols=77 Identities=13% Similarity=0.151 Sum_probs=41.4
Q ss_pred CCCcccHHHHHHHHHcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHHccccc-C-CCCceeHHHHHHH
Q 032093 18 KTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFLLKVQHAFSDLE-R-GRGYLVPDNVYEA 95 (147)
Q Consensus 18 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~f~~~D-~-~~G~i~~~el~~~ 95 (147)
+.|+++..+.+.-+.++|... +.+..+.. ....+-.+....+... . ++=.|+..+..+-
T Consensus 589 kKGY~d~qq~ksElk~LGidK--e~i~klin-----------------~Y~ql~qt~~eIkYIqe~LK~f~IspkeAitE 649 (1070)
T PHA01351 589 KKGYLSLDEIKKQFKAIGIIK--EYEDAFIN-----------------FYNQELQISAFLTILKSQLRQFQIDPKEAETE 649 (1070)
T ss_pred HhccccHHHHHHHHHhhccch--hHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHcccCHHHHHHH
Confidence 357888888888888776642 22222222 2222222222222222 2 4556888888888
Q ss_pred HHHcCCCCCHHHHHHHHHhc
Q 032093 96 LVKIGFSLDSPAFYTVCESF 115 (147)
Q Consensus 96 l~~~~~~~~~~~~~~~~~~~ 115 (147)
|+++| +++.-+..+...+
T Consensus 650 LKKL~--ISdaLAn~IV~eY 667 (1070)
T PHA01351 650 LKKLN--INEYLANQIIQEE 667 (1070)
T ss_pred HHHcC--chHHHHHHHHHHH
Confidence 88876 4455555554443
No 270
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=25.29 E-value=87 Score=14.51 Aligned_cols=18 Identities=17% Similarity=0.272 Sum_probs=13.7
Q ss_pred cccHHHHHHHHHcCCCCC
Q 032093 21 SIAAAQLKHAFAVGNLDF 38 (147)
Q Consensus 21 ~i~~~e~~~~l~~~~~~~ 38 (147)
.++..+++..++..|++.
T Consensus 3 ~l~~~~Lk~~l~~~gl~~ 20 (35)
T smart00513 3 KLKVSELKDELKKRGLST 20 (35)
T ss_pred cCcHHHHHHHHHHcCCCC
Confidence 567788888888887753
No 271
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=25.29 E-value=1.6e+02 Score=17.53 Aligned_cols=51 Identities=12% Similarity=0.074 Sum_probs=35.7
Q ss_pred CCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhhhh
Q 032093 83 GRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQSA 138 (147)
Q Consensus 83 ~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l~~~~~~ 138 (147)
++|.|+.++...+-. .+-+.+.+..++... ..-|.-.|..|+++|...|-+
T Consensus 32 ~~gIlT~~~~e~I~a---~~T~~~k~~~LLdiL--p~RG~~AF~~F~~aL~e~~~l 82 (94)
T cd08327 32 QEGILTESHVEEIES---QTTSRRKTMKLLDIL--PSRGPKAFHAFLDSLEEFPWV 82 (94)
T ss_pred hCCCCCHHHHHHHHc---cCChHHHHHHHHHHH--HhhChhHHHHHHHHHHHHHHH
Confidence 678888888777774 234456677777776 455667889999988765433
No 272
>COG1423 ATP-dependent DNA ligase, homolog of eukaryotic ligase III [DNA replication, recombination, and repair]
Probab=25.18 E-value=2e+02 Score=21.86 Aligned_cols=85 Identities=7% Similarity=0.061 Sum_probs=46.0
Q ss_pred hCCCCCCcccHHHHHHHHHcCCCC---------CC--HHHHHHHHHhhcCCCC---------CcccHHHHHHHHHHHHHH
Q 032093 14 VDSEKTGSIAAAQLKHAFAVGNLD---------FS--LSVVQQMIRMYDFDRN---------GTMSFEEFVELNKFLLKV 73 (147)
Q Consensus 14 ~D~~~~g~i~~~e~~~~l~~~~~~---------~~--~~~~~~~~~~~d~~~~---------~~i~~~ef~~~~~~~~~~ 73 (147)
...+..+.++.++=..++.+-|++ .+ .+++..++..++.++- ..++.--+....++...+
T Consensus 174 re~~tgr~Lp~eer~~l~ekYgl~~V~~fg~~~~~e~~eei~eIve~L~keGREGVV~Kdpdm~~~plKYtTsyan~~Di 253 (382)
T COG1423 174 REKNTGRPLPVEERLELAEKYGLPHVEIFGEFPADEAGEEIYEIVERLNKEGREGVVMKDPDMRVPPLKYTTSYANIEDI 253 (382)
T ss_pred EecCCCCCCCHHHHHHHHHHcCCCceEEeeeechhHhHHHHHHHHHHHhhcCCcceEecCcccccCcceeecccccHHHH
Confidence 345667788888877777765442 11 1567788888765433 223222233333444555
Q ss_pred HHHcccccC-CCCceeHHHHHHHHHH
Q 032093 74 QHAFSDLER-GRGYLVPDNVYEALVK 98 (147)
Q Consensus 74 ~~~f~~~D~-~~G~i~~~el~~~l~~ 98 (147)
+.+|+.+=+ +.+++...=++..+..
T Consensus 254 k~afr~~~elgr~f~~sRiiRe~F~~ 279 (382)
T COG1423 254 KYAFRFFFELGRDFFFSRIIREGFQS 279 (382)
T ss_pred HHHHhhhhhcCchHHHHHHHHHHHHH
Confidence 555555543 5555554444444433
No 273
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=24.71 E-value=1.6e+02 Score=17.29 Aligned_cols=50 Identities=10% Similarity=0.106 Sum_probs=37.9
Q ss_pred CCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhhh
Q 032093 83 GRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQS 137 (147)
Q Consensus 83 ~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l~~~~~ 137 (147)
++|.|+.++...+... +.+++-+..++... ...|..-.+-|..++..+..
T Consensus 26 ~n~~it~E~y~~V~a~---~T~qdkmRkLld~v--~akG~~~k~~F~~iL~e~~~ 75 (85)
T cd08324 26 KNDYFSTEDAEIVCAC---PTQPDKVRKILDLV--QSKGEEVSEYFLYLLQQLAD 75 (85)
T ss_pred ccCCccHHHHHHHHhC---CCCHHHHHHHHHHH--HhcCchHHHHHHHHHHHHHH
Confidence 8999999998888743 45677788888875 55666777788888876654
No 274
>KOG2525 consensus Folylpolyglutamate synthase [Coenzyme transport and metabolism]
Probab=24.53 E-value=93 Score=24.59 Aligned_cols=27 Identities=15% Similarity=0.145 Sum_probs=13.8
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 032093 107 AFYTVCESFDQNKNGRLRLDDFISLCIF 134 (147)
Q Consensus 107 ~~~~~~~~~~~~~~~~i~~~eF~~~l~~ 134 (147)
.+-.+=+++..|+. -||-+.|.+++..
T Consensus 108 HLl~vrErIriNGq-pIS~e~F~~~f~~ 134 (496)
T KOG2525|consen 108 HLLSVRERIRINGQ-PISEEKFTKYFWE 134 (496)
T ss_pred hhcchhheEEECCE-ECCHHHHHHHHHH
Confidence 34444444433333 3777777766654
No 275
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=24.40 E-value=1.8e+02 Score=17.76 Aligned_cols=39 Identities=8% Similarity=0.228 Sum_probs=32.6
Q ss_pred ccHHHHHHHHHcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHH
Q 032093 22 IAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVE 65 (147)
Q Consensus 22 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~ 65 (147)
+|.+++..+|...|.......+..+++.+.. .+.++.+.
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aLaG-----k~V~eli~ 55 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSALNG-----KNIDEVIS 55 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHHcC-----CCHHHHHH
Confidence 9999999999999999999999999988742 35566554
No 276
>PF06207 DUF1002: Protein of unknown function (DUF1002); InterPro: IPR009343 This protein family has no known function. Its members are about 300 amino acids in length. It has so far been detected in Firmicute bacteria and some archaebacteria.
Probab=24.27 E-value=1.5e+02 Score=20.81 Aligned_cols=47 Identities=4% Similarity=0.046 Sum_probs=32.5
Q ss_pred eHHHHHHHHHH----cCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 032093 88 VPDNVYEALVK----IGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIF 134 (147)
Q Consensus 88 ~~~el~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l~~ 134 (147)
+.++++.+... ++..++++++..+...+..=.+-.+++.+|..-+..
T Consensus 173 t~~eI~~IV~~~~~~~~i~ls~~q~~~i~~l~~~~~~~~~~~~~~k~ql~~ 223 (225)
T PF06207_consen 173 TDEEIRNIVNNVLNNYNINLSDEQIQQIVNLMKKIQNLNIDWKQVKEQLNN 223 (225)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 77777766654 577788888888877775544555777777766543
No 277
>PRK09462 fur ferric uptake regulator; Provisional
Probab=23.89 E-value=2e+02 Score=18.30 Aligned_cols=12 Identities=17% Similarity=0.290 Sum_probs=4.6
Q ss_pred cccHHHHHHHHH
Q 032093 21 SIAAAQLKHAFA 32 (147)
Q Consensus 21 ~i~~~e~~~~l~ 32 (147)
.+|.+++...|+
T Consensus 33 h~sa~eI~~~l~ 44 (148)
T PRK09462 33 HVSAEDLYKRLI 44 (148)
T ss_pred CCCHHHHHHHHH
Confidence 333333333333
No 278
>cd08313 Death_TNFR1 Death domain of Tumor Necrosis Factor Receptor 1. Death Domain (DD) found in tumor necrosis factor receptor-1 (TNFR-1). TNFR-1 has many names including TNFRSF1A, CD120a, p55, p60, and TNFR60. It activates two major intracellular signaling pathways that lead to the activation of the transcription factor NF-kB and the induction of cell death. Upon binding of its ligand TNF, TNFR-1 trimerizes which leads to the recruitment of an adaptor protein named TNFR-associated death domain protein (TRADD) through a DD/DD interaction. Mutations in the TNFRSF1A gene causes TNFR-associated periodic syndrome (TRAPS), a rare disorder characterized recurrent fever, myalgia, abdominal pain, conjunctivitis and skin eruptions. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation a
Probab=23.84 E-value=1.6e+02 Score=16.97 Aligned_cols=65 Identities=6% Similarity=-0.043 Sum_probs=39.9
Q ss_pred cccHHHHHHHHHcCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHHcccccCCCC--ceeHHHHHHHHHH
Q 032093 21 SIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFLLKVQHAFSDLERGRG--YLVPDNVYEALVK 98 (147)
Q Consensus 21 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~f~~~D~~~G--~i~~~el~~~l~~ 98 (147)
.++..+++.+.+.+| +++..|+.+-..+. +. .++...+++.+-.+.| .-+...+..+|+.
T Consensus 8 ~v~~~~wk~~~R~LG--lse~~Id~ie~~~~-------~~---------~Eq~yqmL~~W~~~~g~~~At~~~L~~aLr~ 69 (80)
T cd08313 8 EVPPRRWKEFVRRLG--LSDNEIERVELDHR-------RC---------RDAQYQMLKVWKERGPRPYATLQHLLSVLRD 69 (80)
T ss_pred hCCHHHHHHHHHHcC--CCHHHHHHHHHhCC-------Ch---------HHHHHHHHHHHHHhcCCCcchHHHHHHHHHH
Confidence 577889999999877 55777776655332 11 1222233333332334 5788888889888
Q ss_pred cCCCC
Q 032093 99 IGFSL 103 (147)
Q Consensus 99 ~~~~~ 103 (147)
++...
T Consensus 70 ~~l~~ 74 (80)
T cd08313 70 MELVG 74 (80)
T ss_pred cCcHH
Confidence 77543
No 279
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=23.53 E-value=1.2e+02 Score=20.03 Aligned_cols=41 Identities=15% Similarity=0.242 Sum_probs=26.9
Q ss_pred HhhhCCCCCCcccHHHHHHHHHcCCC-----CCCHHHHHHHHHhhc
Q 032093 11 FDRVDSEKTGSIAAAQLKHAFAVGNL-----DFSLSVVQQMIRMYD 51 (147)
Q Consensus 11 F~~~D~~~~g~i~~~e~~~~l~~~~~-----~~~~~~~~~~~~~~d 51 (147)
|..+-....+.++.++|+.+|..+.- ...++++..|.+.+.
T Consensus 63 fsKvkg~~~~~~tf~~fkkal~ela~~R~k~Ks~ee~l~~I~~lla 108 (180)
T KOG4070|consen 63 FSKVKGKKARTITFEEFKKALEELATKRFKGKSKEEALDAICQLLA 108 (180)
T ss_pred eeeccccccccccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHh
Confidence 44444455678889999888887641 455666666666654
No 280
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=23.30 E-value=1.4e+02 Score=16.14 Aligned_cols=12 Identities=8% Similarity=0.088 Sum_probs=3.9
Q ss_pred CCHHHHHHHHHh
Q 032093 103 LDSPAFYTVCES 114 (147)
Q Consensus 103 ~~~~~~~~~~~~ 114 (147)
++.+++..++..
T Consensus 15 Ls~~e~~~~~~~ 26 (66)
T PF02885_consen 15 LSREEAKAAFDA 26 (66)
T ss_dssp --HHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 333333333333
No 281
>PHA02335 hypothetical protein
Probab=23.12 E-value=1.9e+02 Score=17.75 Aligned_cols=47 Identities=15% Similarity=0.229 Sum_probs=33.6
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHcccccC-CCC--ceeHHHHHHHHHHcC
Q 032093 54 RNGTMSFEEFVELNKFLLKVQHAFSDLER-GRG--YLVPDNVYEALVKIG 100 (147)
Q Consensus 54 ~~~~i~~~ef~~~~~~~~~~~~~f~~~D~-~~G--~i~~~el~~~l~~~~ 100 (147)
+...|++++|..-+++.+-+.+.|+.|.+ ++- .+-..++..+...+|
T Consensus 21 np~sVt~ddf~~DlkRi~yIkrllKRy~~~~~~k~hlIlNhlI~l~NvF~ 70 (118)
T PHA02335 21 NPQSVTYDDFEEDLKRFKYIKRLFKRYLNTGELKTHLILNHIIILYNVFG 70 (118)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhh
Confidence 45679999999999999999999999984 433 344455555555544
No 282
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=22.85 E-value=1.1e+02 Score=16.99 Aligned_cols=26 Identities=12% Similarity=0.143 Sum_probs=12.3
Q ss_pred HHHHHHHHHcC----CCCCCHHHHHHHHHh
Q 032093 24 AAQLKHAFAVG----NLDFSLSVVQQMIRM 49 (147)
Q Consensus 24 ~~e~~~~l~~~----~~~~~~~~~~~~~~~ 49 (147)
..+++.++..+ |...+++.+..+|..
T Consensus 42 a~~L~~A~~~L~~ItG~~~~ediLd~IFs~ 71 (73)
T PF12631_consen 42 AEDLREALESLGEITGEVVTEDILDNIFSN 71 (73)
T ss_dssp HHHHHHHHHHHHHHCTSS--HHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHhCCCChHHHHHHHHHh
Confidence 44455555432 555555556655543
No 283
>PF10982 DUF2789: Protein of unknown function (DUF2789); InterPro: IPR021250 This bacterial family of proteins has no known function. ; PDB: 2KP6_A.
Probab=22.19 E-value=1.3e+02 Score=17.12 Aligned_cols=34 Identities=12% Similarity=0.210 Sum_probs=21.4
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcc
Q 032093 90 DNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRL 123 (147)
Q Consensus 90 ~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i 123 (147)
..+..++..+|..-++..|+.++.......+-.+
T Consensus 6 h~l~~LF~QLGL~~~~~~I~~FI~~H~L~~~~~L 39 (74)
T PF10982_consen 6 HTLSNLFAQLGLDSSDEAIEAFIETHQLPADVHL 39 (74)
T ss_dssp THHHHHHHHHTS---HHHHHHHHHHS---TTS-S
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHhCCCCCCCcc
Confidence 4577888889999899999999998875544443
No 284
>PRK05988 formate dehydrogenase subunit gamma; Validated
Probab=22.16 E-value=2.4e+02 Score=18.47 Aligned_cols=57 Identities=18% Similarity=0.163 Sum_probs=34.0
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHHcccccCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhc
Q 032093 41 SVVQQMIRMYDFDRNGTMSFEEFVELNKFLLKVQHAFSDLERGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESF 115 (147)
Q Consensus 41 ~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~f~~~D~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 115 (147)
..++.++..+....+ .++..+..++. ..|+|+.+-+..+-..+| +++.++..++..|
T Consensus 9 ~~i~~ii~~y~~~~~---------~li~~L~~vQ~-------~~G~Ip~e~~~~iA~~l~--v~~~~V~~vatFY 65 (156)
T PRK05988 9 ARIAAIIAEHKHLEG---------ALLPILHAIQD-------EFGYVPEDAVPVIAEALN--LSRAEVHGVITFY 65 (156)
T ss_pred HHHHHHHHHcCCCHH---------HHHHHHHHHHH-------HcCCCCHHHHHHHHHHhC--CCHHHHHHHHHHh
Confidence 345666666643221 33334444444 348888888888888777 4466666666555
No 285
>TIGR01321 TrpR trp operon repressor, proteobacterial. This model represents TrpR, the repressor of the trp operon. It is found so far only in the gamma subdivision of the proteobacteria and in Chlamydia trachomatis. All members belong to species capable of tryptophan biosynthesis.
Probab=21.89 E-value=1.8e+02 Score=17.42 Aligned_cols=11 Identities=0% Similarity=-0.100 Sum_probs=4.4
Q ss_pred CHHHHHHHHHh
Q 032093 104 DSPAFYTVCES 114 (147)
Q Consensus 104 ~~~~~~~~~~~ 114 (147)
|++|...+..+
T Consensus 34 Tp~E~~~l~~R 44 (94)
T TIGR01321 34 TRSEREDLGDR 44 (94)
T ss_pred CHHHHHHHHHH
Confidence 34444444333
No 286
>PF13331 DUF4093: Domain of unknown function (DUF4093)
Probab=21.71 E-value=1.6e+02 Score=17.29 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=18.0
Q ss_pred CCCceeHHHHHHHHHHcCCCCCHHHHHHHH
Q 032093 83 GRGYLVPDNVYEALVKIGFSLDSPAFYTVC 112 (147)
Q Consensus 83 ~~G~i~~~el~~~l~~~~~~~~~~~~~~~~ 112 (147)
+=|+.+..+|.+.|..+| +|.+++...+
T Consensus 59 ~iGy~N~KqllkrLN~f~--it~~e~~~al 86 (87)
T PF13331_consen 59 GIGYGNAKQLLKRLNMFG--ITREEFEEAL 86 (87)
T ss_pred CCCCCCHHHHHHHHHHcC--CCHHHHHHHh
Confidence 447777777777776665 5566665543
No 287
>PRK00441 argR arginine repressor; Provisional
Probab=21.60 E-value=2.2e+02 Score=18.53 Aligned_cols=33 Identities=12% Similarity=0.131 Sum_probs=29.2
Q ss_pred CCcccHHHHHHHHHcCCCCCCHHHHHHHHHhhc
Q 032093 19 TGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYD 51 (147)
Q Consensus 19 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 51 (147)
.+..+.+++...|...|+..+...+.+-+..+.
T Consensus 16 ~~~~~q~eL~~~L~~~G~~vSqaTisRDl~~L~ 48 (149)
T PRK00441 16 KEIETQEELAEELKKMGFDVTQATVSRDIKELK 48 (149)
T ss_pred cCCCcHHHHHHHHHhcCCCcCHHHHHHHHHHcC
Confidence 468899999999999999999999998888764
No 288
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=21.21 E-value=1.3e+02 Score=16.52 Aligned_cols=7 Identities=43% Similarity=0.999 Sum_probs=2.2
Q ss_pred ccHHHHH
Q 032093 123 LRLDDFI 129 (147)
Q Consensus 123 i~~~eF~ 129 (147)
|+++.|+
T Consensus 40 I~~d~~l 46 (65)
T PF09454_consen 40 IDLDTFL 46 (65)
T ss_dssp S-HHHHH
T ss_pred CCHHHHH
Confidence 3333333
No 289
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=21.21 E-value=38 Score=19.43 Aligned_cols=32 Identities=9% Similarity=0.167 Sum_probs=14.9
Q ss_pred CCcccHHHHHHHHHcCCCCCCHHHHHHHHHhh
Q 032093 19 TGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMY 50 (147)
Q Consensus 19 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 50 (147)
+|.-+..+|-.+|..+|-..-+..++-+++.+
T Consensus 38 S~k~~~p~fPkFLn~LGteIiEnAVefiLrSM 69 (88)
T PF15144_consen 38 SGKNPEPDFPKFLNLLGTEIIENAVEFILRSM 69 (88)
T ss_pred cCCCCCCchHHHHHHhhHHHHHHHHHHHHHHh
Confidence 34444445555555555444444444444443
No 290
>TIGR02878 spore_ypjB sporulation protein YpjB. Members of this protein, YpjB, family are restricted to a subset of endospore-forming bacteria, including Bacillus species but not CLostridium or some others. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon, where sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect. This protein family is not, however, a part of the endospore formation minimal gene set.
Probab=21.09 E-value=3.1e+02 Score=19.43 Aligned_cols=44 Identities=16% Similarity=0.148 Sum_probs=27.4
Q ss_pred HHHHHHcccccC-CCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCC
Q 032093 71 LKVQHAFSDLER-GRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNK 119 (147)
Q Consensus 71 ~~~~~~f~~~D~-~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~ 119 (147)
+.+...+..++. ++-.++..+...-|..+ ..++..+|.....++
T Consensus 151 q~v~~~i~~l~~~r~~~~~~~~~~~~L~~~-----~~dl~~lF~~vkkD~ 195 (233)
T TIGR02878 151 QRVDSHLSYLENFRFQQRSEDEKEEQLSLM-----RGDLKALFDGVKEDE 195 (233)
T ss_pred HHHHHHHHHHHhhhhhccChHHHHHHHHHH-----HHHHHHHHcccccCC
Confidence 455556666663 55567777766666654 456777777765544
No 291
>PRK10945 gene expression modulator; Provisional
Probab=20.79 E-value=1.8e+02 Score=16.46 Aligned_cols=16 Identities=13% Similarity=-0.058 Sum_probs=8.8
Q ss_pred CCceeHHHHHHHHHHc
Q 032093 84 RGYLVPDNVYEALVKI 99 (147)
Q Consensus 84 ~G~i~~~el~~~l~~~ 99 (147)
+..++.+|+..+.++.
T Consensus 32 ~~~L~~~E~~~f~~Aa 47 (72)
T PRK10945 32 KYELSDDELAVFYSAA 47 (72)
T ss_pred hccCCHHHHHHHHHHH
Confidence 4455556666665544
No 292
>PF14848 HU-DNA_bdg: DNA-binding domain
Probab=20.38 E-value=2.3e+02 Score=17.61 Aligned_cols=33 Identities=21% Similarity=0.338 Sum_probs=19.2
Q ss_pred CCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhc
Q 032093 83 GRGYLVPDNVYEALVKIGFSLDSPAFYTVCESF 115 (147)
Q Consensus 83 ~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 115 (147)
..|.++.+++..-+..-+..++..++..++..+
T Consensus 25 ~~~~~tl~~Ia~~i~~~~s~~t~~di~~vl~~~ 57 (124)
T PF14848_consen 25 SSGTLTLEDIAEEIAKEGSTLTRADIEAVLNAL 57 (124)
T ss_pred ecCccCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 356666666666555445556666655555543
No 293
>PF01257 2Fe-2S_thioredx: Thioredoxin-like [2Fe-2S] ferredoxin; InterPro: IPR002023 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. Among the many polypeptide subunits that make up complex I, there is one with a molecular weight of 24 kDa (in mammals), which is a component of the iron-sulphur (IP) fragment of the enzyme. It seems to bind a 2Fe-2S iron-sulphur cluster. The 24 kDa subunit is nuclear encoded, as a precursor form with a transit peptide in mammals and in Neurospora crassa. There is a highly conserved region located in the central section of this subunit that contains two conserved cysteines, that are probably involved in the binding of the 2Fe-2S centre. The 24 kDa subunit is highly similar to [, ]: Subunit E of Escherichia coli NADH-ubiquinone oxidoreductase (gene nuoE) Subunit NQO2 of Paracoccus denitrificans NADH-ubiquinone oxidoreductase ; GO: 0016491 oxidoreductase activity, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 1M2D_A 1M2A_B 1F37_B 1M2B_B 2FUG_B 3M9S_B 3IAM_B 3IAS_K 2YBB_2 3I9V_B ....
Probab=20.37 E-value=2.5e+02 Score=17.98 Aligned_cols=31 Identities=19% Similarity=0.426 Sum_probs=21.4
Q ss_pred CCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcC
Q 032093 84 RGYLVPDNVYEALVKIGFSLDSPAFYTVCESFD 116 (147)
Q Consensus 84 ~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~ 116 (147)
-|+|+.+-+..+-..++ +++.++..++..|.
T Consensus 26 ~g~i~~~~~~~iA~~l~--i~~~~v~~v~tFY~ 56 (145)
T PF01257_consen 26 YGYIPEEALEEIAEALG--IPPAEVYGVATFYS 56 (145)
T ss_dssp HSS--HHHHHHHHHHHT--S-HHHHHHHHHHSS
T ss_pred cCCCCHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence 38899988888888887 55677777777664
No 294
>PF04719 TAFII28: hTAFII28-like protein conserved region; InterPro: IPR006809 The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex. The conserved region is found at the C terminus of most member proteins. The crystal structure of hTAFII28 with hTAFII18 shows that this region is involved in the binding of these two subunits. The conserved region contains four alpha helices and three loops arranged as in histone H3 [, ].; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005634 nucleus; PDB: 1BH9_B 1BH8_B.
Probab=20.30 E-value=2e+02 Score=16.98 Aligned_cols=59 Identities=20% Similarity=0.165 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHhhcCCCCCcccHHHHH--HHHHHH---HHHHHHccccc-C-CCCceeHHHHHHHHHH
Q 032093 38 FSLSVVQQMIRMYDFDRNGTMSFEEFV--ELNKFL---LKVQHAFSDLE-R-GRGYLVPDNVYEALVK 98 (147)
Q Consensus 38 ~~~~~~~~~~~~~d~~~~~~i~~~ef~--~~~~~~---~~~~~~f~~~D-~-~~G~i~~~el~~~l~~ 98 (147)
++...+++++.....+ ..++-.--+ .-+... +.++.+...-+ . .+|.|.+..++++.+.
T Consensus 24 ~~k~~ikkli~~~~~~--qsv~~~v~i~v~g~aKvFVGEiVE~A~~Vq~~~~~~~pl~P~hlreA~rr 89 (90)
T PF04719_consen 24 FNKAAIKKLINQVLGN--QSVSQNVVIAVAGIAKVFVGEIVEEARDVQEEWGETGPLQPDHLREAYRR 89 (90)
T ss_dssp --HHHHHHHHHHHHS---S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--SS--HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCC--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHh
Confidence 5566778888876532 233322222 222221 45566666666 3 6789999999988765
No 295
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=20.30 E-value=98 Score=14.20 Aligned_cols=11 Identities=27% Similarity=0.326 Sum_probs=5.1
Q ss_pred eeHHHHHHHHH
Q 032093 87 LVPDNVYEALV 97 (147)
Q Consensus 87 i~~~el~~~l~ 97 (147)
||.+|+++++.
T Consensus 17 ls~eeir~FL~ 27 (30)
T PF08671_consen 17 LSKEEIREFLE 27 (30)
T ss_dssp --HHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 55566655553
No 296
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=20.28 E-value=2.3e+02 Score=21.19 Aligned_cols=43 Identities=14% Similarity=0.172 Sum_probs=19.6
Q ss_pred CCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhh--hhhhcccccCC
Q 032093 103 LDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQ--SARYESLKFSC 147 (147)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~i~~~eF~~~l~~~~--~~~~~~~~~~~ 147 (147)
++.++++..++.++ +.=.|+-+|....+.... .+++.+...+|
T Consensus 203 fs~~Dld~aL~~~~--E~lDIdrddLe~llr~~elqa~~R~~~~Ltc 247 (382)
T COG3448 203 FSSEDLDAALQRLG--ETLDIDRDDLERLLRETELQALRRRMGELTC 247 (382)
T ss_pred CCHHHHHHHHHhcC--ceecCCHHHHHHHHHHHHHHHHHHHhccccH
Confidence 34445555555542 222244555544444322 44555555554
Done!