BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032094
(147 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1O4V|A Chain A, Crystal Structure Of The Catalytic Subunit Of A
Phosphoribosylaminoimidazole Mutase (Tm0446) From
Thermotoga Maritima At 1.77 A Resolution
Length = 183
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 47/76 (61%)
Query: 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIII 118
P VGIIM SD DLPVM AA L +FG+ YEI I+ H+ YA +A+ERGI++II
Sbjct: 14 PRVGIIMGSDSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVII 73
Query: 119 VGDGVEAHLSGTCSCC 134
G G AHL G +
Sbjct: 74 AGAGGAAHLPGMVASI 89
>pdb|2FW1|A Chain A, Structure Of Pure (n5-carboxyaminoimidazole Ribonucleotide
Mutase) From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 8.5
pdb|2FW1|B Chain B, Structure Of Pure (n5-carboxyaminoimidazole Ribonucleotide
Mutase) From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 8.5
pdb|2FWJ|A Chain A, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) From The Acidophilic Bacterium Acetobacter
Aceti, Complexed With Air (5-Aminoimidazole
Ribonucleotide)
pdb|2FWJ|B Chain B, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) From The Acidophilic Bacterium Acetobacter
Aceti, Complexed With Air (5-Aminoimidazole
Ribonucleotide)
Length = 183
Score = 63.5 bits (153), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 43/80 (53%)
Query: 55 STDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 114
+ AP+VGIIM S D M A L++ +P+E I+ H+ YA +A ERG+
Sbjct: 19 AASAPVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGL 78
Query: 115 KIIIVGDGVEAHLSGTCSCC 134
+II G G AHL G C+
Sbjct: 79 NVIIAGAGGAAHLPGMCAAW 98
>pdb|1U11|A Chain A, Pure (N5-Carboxyaminoimidazole Ribonucleotide Mutase) From
The Acidophile Acetobacter Aceti
pdb|1U11|B Chain B, Pure (N5-Carboxyaminoimidazole Ribonucleotide Mutase) From
The Acidophile Acetobacter Aceti
Length = 182
Score = 63.5 bits (153), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 43/80 (53%)
Query: 55 STDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 114
+ AP+VGIIM S D M A L++ +P+E I+ H+ YA +A ERG+
Sbjct: 18 AASAPVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGL 77
Query: 115 KIIIVGDGVEAHLSGTCSCC 134
+II G G AHL G C+
Sbjct: 78 NVIIAGAGGAAHLPGMCAAW 97
>pdb|3LP6|A Chain A, Crystal Structure Of Rv3275c-E60a From Mycobacterium
Tubercu 1.7a Resolution
pdb|3LP6|B Chain B, Crystal Structure Of Rv3275c-E60a From Mycobacterium
Tubercu 1.7a Resolution
pdb|3LP6|C Chain C, Crystal Structure Of Rv3275c-E60a From Mycobacterium
Tubercu 1.7a Resolution
pdb|3LP6|D Chain D, Crystal Structure Of Rv3275c-E60a From Mycobacterium
Tubercu 1.7a Resolution
Length = 174
Score = 63.5 bits (153), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 47/76 (61%)
Query: 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIII 118
P VG+IM SD D PVM DAA L++F +P E++++ H+ + SYA A RG+++II
Sbjct: 8 PRVGVIMGSDSDWPVMADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGLEVII 67
Query: 119 VGDGVEAHLSGTCSCC 134
G G AHL G +
Sbjct: 68 AGAGGAAHLPGMVAAA 83
>pdb|4GRD|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Burkholderia
Cenocepacia J2315
pdb|4GRD|B Chain B, Crystal Structure Of Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Burkholderia
Cenocepacia J2315
pdb|4GRD|C Chain C, Crystal Structure Of Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Burkholderia
Cenocepacia J2315
pdb|4GRD|D Chain D, Crystal Structure Of Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Burkholderia
Cenocepacia J2315
Length = 173
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 47/85 (55%)
Query: 49 ENPNGDSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALS 108
E + AP+VG++M S D VM A L +FGVPYE K++ H+ E YA
Sbjct: 3 EIQTAHTHSAPLVGVLMGSSSDWDVMKHAVAILQEFGVPYEAKVVSAHRMPDEMFDYAEK 62
Query: 109 AKERGIKIIIVGDGVEAHLSGTCSC 133
A+ERG++ II G G AHL G +
Sbjct: 63 ARERGLRAIIAGAGGAAHLPGMLAA 87
>pdb|2FWA|A Chain A, Structure Of Pure (n5-carboxyaminoimidazole Ribonucleotide
Mutase) H89n From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 7
pdb|2FWA|B Chain B, Structure Of Pure (n5-carboxyaminoimidazole Ribonucleotide
Mutase) H89n From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 7
Length = 183
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 43/80 (53%)
Query: 55 STDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 114
+ AP+VGIIM S D M A L++ +P+E I+ H+ YA +A ERG+
Sbjct: 19 AASAPVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGL 78
Query: 115 KIIIVGDGVEAHLSGTCSCC 134
+II G G A+L G C+
Sbjct: 79 NVIIAGAGGAANLPGMCAAW 98
>pdb|2FW6|A Chain A, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) Mutant H59n From The Acidophilic Bacterium
Acetobacter Aceti, At Ph 5.4
pdb|2FW6|B Chain B, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) Mutant H59n From The Acidophilic Bacterium
Acetobacter Aceti, At Ph 5.4
pdb|2FW7|A Chain A, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) H59n From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 8
pdb|2FW7|B Chain B, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) H59n From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 8
pdb|2FWP|A Chain A, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) H59n From The Acidophilic Bacterium Acetobacter
Aceti, Bound To Isocair
pdb|2FWP|B Chain B, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) H59n From The Acidophilic Bacterium Acetobacter
Aceti, Bound To Isocair
Length = 183
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 43/80 (53%)
Query: 55 STDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 114
+ AP+VGIIM S D M A L++ +P+E I+ ++ YA +A ERG+
Sbjct: 19 AASAPVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSANRTPDRLADYARTAAERGL 78
Query: 115 KIIIVGDGVEAHLSGTCSCC 134
+II G G AHL G C+
Sbjct: 79 NVIIAGAGGAAHLPGMCAAW 98
>pdb|2FWB|A Chain A, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) H89f From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 8
pdb|2FWB|B Chain B, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) H89f From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 8
Length = 183
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 42/80 (52%)
Query: 55 STDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 114
+ AP+VGIIM S D M A L++ +P+E I+ H+ YA +A ERG+
Sbjct: 19 AASAPVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGL 78
Query: 115 KIIIVGDGVEAHLSGTCSCC 134
+II G G A L G C+
Sbjct: 79 NVIIAGAGGAAFLPGMCAAW 98
>pdb|2FW9|A Chain A, Structure Of Pure (n5-carboxyaminoimidazole Ribonucleotide
Mutase) H59f From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 8
pdb|2FW9|B Chain B, Structure Of Pure (n5-carboxyaminoimidazole Ribonucleotide
Mutase) H59f From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 8
Length = 183
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 42/80 (52%)
Query: 55 STDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 114
+ AP+VGIIM S D M A L++ +P+E I+ + YA +A ERG+
Sbjct: 19 AASAPVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAFRTPDRLADYARTAAERGL 78
Query: 115 KIIIVGDGVEAHLSGTCSCC 134
+II G G AHL G C+
Sbjct: 79 NVIIAGAGGAAHLPGMCAAW 98
>pdb|2FWI|A Chain A, Structure Of Pure (n5-carboxyaminoimidazole Ribonucleotide
Mutase) H59d, From The Acidophilic Bacterium Acetobacter
Aceti, Complexed With 5-aminoimidazole Ribonucleotide
(air)
pdb|2FWI|B Chain B, Structure Of Pure (n5-carboxyaminoimidazole Ribonucleotide
Mutase) H59d, From The Acidophilic Bacterium Acetobacter
Aceti, Complexed With 5-aminoimidazole Ribonucleotide
(air)
Length = 183
Score = 59.7 bits (143), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 42/80 (52%)
Query: 55 STDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 114
+ AP+VGIIM S D M A L++ +P+E I+ + YA +A ERG+
Sbjct: 19 AASAPVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSADRTPDRLADYARTAAERGL 78
Query: 115 KIIIVGDGVEAHLSGTCSCC 134
+II G G AHL G C+
Sbjct: 79 NVIIAGAGGAAHLPGMCAAW 98
>pdb|1XMP|A Chain A, Crystal Structure Of Pure (Ba0288) From Bacillus Anthracis
At 1.8 Resolution
pdb|1XMP|B Chain B, Crystal Structure Of Pure (Ba0288) From Bacillus Anthracis
At 1.8 Resolution
pdb|1XMP|C Chain C, Crystal Structure Of Pure (Ba0288) From Bacillus Anthracis
At 1.8 Resolution
pdb|1XMP|D Chain D, Crystal Structure Of Pure (Ba0288) From Bacillus Anthracis
At 1.8 Resolution
pdb|1XMP|E Chain E, Crystal Structure Of Pure (Ba0288) From Bacillus Anthracis
At 1.8 Resolution
pdb|1XMP|F Chain F, Crystal Structure Of Pure (Ba0288) From Bacillus Anthracis
At 1.8 Resolution
pdb|1XMP|G Chain G, Crystal Structure Of Pure (Ba0288) From Bacillus Anthracis
At 1.8 Resolution
pdb|1XMP|H Chain H, Crystal Structure Of Pure (Ba0288) From Bacillus Anthracis
At 1.8 Resolution
Length = 170
Score = 59.3 bits (142), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 41/74 (55%)
Query: 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIV 119
+VG+IM S D M A L + +PYE K++ H+ YA +A+ERG+K+II
Sbjct: 13 LVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIA 72
Query: 120 GDGVEAHLSGTCSC 133
G G AHL G +
Sbjct: 73 GAGGAAHLPGMVAA 86
>pdb|4B4K|A Chain A, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|B Chain B, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|C Chain C, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|D Chain D, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|E Chain E, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|F Chain F, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|G Chain G, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|H Chain H, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|I Chain I, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|J Chain J, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|K Chain K, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|L Chain L, Crystal Structure Of Bacillus Anthracis Pure
pdb|4AY3|A Chain A, Crystal Structure Of Bacillus Anthracis Pure
pdb|4AY3|B Chain B, Crystal Structure Of Bacillus Anthracis Pure
pdb|4AY3|C Chain C, Crystal Structure Of Bacillus Anthracis Pure
pdb|4AY3|D Chain D, Crystal Structure Of Bacillus Anthracis Pure
pdb|4AY4|A Chain A, Crystal Structure Of Bacillus Anthracis Pure
pdb|4AY4|B Chain B, Crystal Structure Of Bacillus Anthracis Pure
pdb|4AY4|C Chain C, Crystal Structure Of Bacillus Anthracis Pure
pdb|4AY4|D Chain D, Crystal Structure Of Bacillus Anthracis Pure
Length = 181
Score = 59.3 bits (142), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 41/74 (55%)
Query: 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIV 119
+VG+IM S D M A L + +PYE K++ H+ YA +A+ERG+K+II
Sbjct: 24 LVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIA 83
Query: 120 GDGVEAHLSGTCSC 133
G G AHL G +
Sbjct: 84 GAGGAAHLPGMVAA 97
>pdb|3OOW|A Chain A, Octameric Structure Of The Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Francisella
Tularensis Subsp. Tularensis Schu S4.
pdb|3OOW|B Chain B, Octameric Structure Of The Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Francisella
Tularensis Subsp. Tularensis Schu S4.
pdb|3OOW|C Chain C, Octameric Structure Of The Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Francisella
Tularensis Subsp. Tularensis Schu S4.
pdb|3OOW|D Chain D, Octameric Structure Of The Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Francisella
Tularensis Subsp. Tularensis Schu S4.
pdb|3OOW|E Chain E, Octameric Structure Of The Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Francisella
Tularensis Subsp. Tularensis Schu S4.
pdb|3OOW|F Chain F, Octameric Structure Of The Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Francisella
Tularensis Subsp. Tularensis Schu S4.
pdb|3OOW|G Chain G, Octameric Structure Of The Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Francisella
Tularensis Subsp. Tularensis Schu S4.
pdb|3OOW|H Chain H, Octameric Structure Of The Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Francisella
Tularensis Subsp. Tularensis Schu S4
Length = 166
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%)
Query: 61 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120
VG+I S D + L + G+ YE +++ H+ + YA +AKERG+K+II G
Sbjct: 8 VGVIXGSKSDWSTXKECCDILDNLGIGYECEVVSAHRTPDKXFDYAETAKERGLKVIIAG 67
Query: 121 DGVEAHLSGTCSC 133
G AHL G +
Sbjct: 68 AGGAAHLPGXVAA 80
>pdb|3OPQ|A Chain A, Phosphoribosylaminoimidazole Carboxylase With
Fructose-6-Phosphate Bound To The Central Channel Of The
Octameric Protein Structure.
pdb|3OPQ|B Chain B, Phosphoribosylaminoimidazole Carboxylase With
Fructose-6-Phosphate Bound To The Central Channel Of The
Octameric Protein Structure.
pdb|3OPQ|C Chain C, Phosphoribosylaminoimidazole Carboxylase With
Fructose-6-Phosphate Bound To The Central Channel Of The
Octameric Protein Structure.
pdb|3OPQ|D Chain D, Phosphoribosylaminoimidazole Carboxylase With
Fructose-6-Phosphate Bound To The Central Channel Of The
Octameric Protein Structure.
pdb|3OPQ|E Chain E, Phosphoribosylaminoimidazole Carboxylase With
Fructose-6-Phosphate Bound To The Central Channel Of The
Octameric Protein Structure.
pdb|3OPQ|F Chain F, Phosphoribosylaminoimidazole Carboxylase With
Fructose-6-Phosphate Bound To The Central Channel Of The
Octameric Protein Structure.
pdb|3OPQ|G Chain G, Phosphoribosylaminoimidazole Carboxylase With
Fructose-6-Phosphate Bound To The Central Channel Of The
Octameric Protein Structure.
pdb|3OPQ|H Chain H, Phosphoribosylaminoimidazole Carboxylase With
Fructose-6-Phosphate Bound To The Central Channel Of The
Octameric Protein Structure
Length = 163
Score = 53.1 bits (126), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%)
Query: 61 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120
VG+I S D + L + G+ YE +++ H+ + YA +AKERG+K+II G
Sbjct: 5 VGVIXGSKSDWSTXKECCDILDNLGIGYECEVVSAHRTPDKXFDYAETAKERGLKVIIAG 64
Query: 121 DGVEAHLSGTCSC 133
G AHL G +
Sbjct: 65 AGGAAHLPGXVAA 77
>pdb|2FW8|A Chain A, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) H89g From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 8
pdb|2FW8|B Chain B, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) H89g From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 8
Length = 183
Score = 52.8 bits (125), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 42/80 (52%)
Query: 55 STDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 114
+ AP+VGIIM S D M A L++ +P+E I+ H+ YA +A ERG+
Sbjct: 19 AASAPVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGL 78
Query: 115 KIIIVGDGVEAHLSGTCSCC 134
+II G G A L G C+
Sbjct: 79 NVIIAGAGGAAGLPGMCAAW 98
>pdb|2NSH|A Chain A, E. Coli Pure H45q Mutant Complexed With Nitro-Air
pdb|2NSJ|A Chain A, E. Coli Pure H45q Mutant Complexed With Cair
Length = 169
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%)
Query: 61 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120
V I+M S D M AA VP+ ++++ + + S+A SA+E G ++II G
Sbjct: 10 VAIVMGSKSDWATMQFAAEIFEILNVPHHVEVVSAQRTPDKLFSFAESAEENGYQVIIAG 69
Query: 121 DGVEAHLSGTCSC 133
G AHL G +
Sbjct: 70 AGGAAHLPGMIAA 82
>pdb|2NSL|A Chain A, E. Coli Pure H45n Mutant Complexed With Cair
Length = 169
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%)
Query: 61 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120
V I+M S D M AA VP+ ++++ ++ + S+A SA+E G ++II G
Sbjct: 10 VAIVMGSKSDWATMQFAAEIFEILNVPHHVEVVSANRTPDKLFSFAESAEENGYQVIIAG 69
Query: 121 DGVEAHLSGTCSC 133
G AHL G +
Sbjct: 70 AGGAAHLPGMIAA 82
>pdb|2ATE|A Chain A, Structure Of The Complex Of Pure With Nitroair
Length = 169
Score = 45.8 bits (107), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%)
Query: 61 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120
V I+ S D AA VP+ ++++ H+ + S+A SA+E G ++II G
Sbjct: 10 VAIVXGSKSDWATXQFAAEIFEILNVPHHVEVVSAHRTPDKLFSFAESAEENGYQVIIAG 69
Query: 121 DGVEAHLSGTCSC 133
G AHL G +
Sbjct: 70 AGGAAHLPGXIAA 82
>pdb|1QCZ|A Chain A, Crystal Structure Of E. Coli Pure, An Unusual Mutase That
Catalyzes The Conversion Of N5-carboxyaminoimidazole
Ribonucleotide (n5-cair) To 4-carboxyaminoimidazole
Ribonucleotide (cair) In The Purine Biosynthetic Pathway
Length = 169
Score = 45.8 bits (107), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%)
Query: 61 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120
V I+ S D AA VP+ ++++ H+ + S+A SA+E G ++II G
Sbjct: 10 VAIVXGSKSDWATXQFAAEIFEILNVPHHVEVVSAHRTPDKLFSFAESAEENGYQVIIAG 69
Query: 121 DGVEAHLSGTCSC 133
G AHL G +
Sbjct: 70 AGGAAHLPGXIAA 82
>pdb|1D7A|A Chain A, Crystal Structure Of E. Coli Pure-Mononucleotide Complex.
pdb|1D7A|B Chain B, Crystal Structure Of E. Coli Pure-Mononucleotide Complex.
pdb|1D7A|C Chain C, Crystal Structure Of E. Coli Pure-Mononucleotide Complex.
pdb|1D7A|D Chain D, Crystal Structure Of E. Coli Pure-Mononucleotide Complex.
pdb|1D7A|L Chain L, Crystal Structure Of E. Coli Pure-Mononucleotide Complex.
pdb|1D7A|M Chain M, Crystal Structure Of E. Coli Pure-Mononucleotide Complex.
pdb|1D7A|N Chain N, Crystal Structure Of E. Coli Pure-Mononucleotide Complex.
pdb|1D7A|O Chain O, Crystal Structure Of E. Coli Pure-Mononucleotide Complex
Length = 161
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%)
Query: 61 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120
V I+ S D AA VP+ ++++ H+ + S+A SA+E G ++II G
Sbjct: 4 VAIVXGSKSDWATXQFAAEIFEILNVPHHVEVVSAHRTPDKLFSFAESAEENGYQVIIAG 63
Query: 121 DGVEAHLSGTCSC 133
G AHL G +
Sbjct: 64 AGGAAHLPGXIAA 76
>pdb|3KUU|A Chain A, Structure Of The Pure Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Yersinia Pestis
pdb|3KUU|B Chain B, Structure Of The Pure Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Yersinia Pestis
pdb|3KUU|C Chain C, Structure Of The Pure Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Yersinia Pestis
pdb|3KUU|D Chain D, Structure Of The Pure Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Yersinia Pestis
Length = 174
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%)
Query: 61 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120
+ I+ S D AA L+ VP+ ++++ H+ S+A A+ G+ +II G
Sbjct: 15 IAIVXGSKSDWATXQFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAG 74
Query: 121 DGVEAHLSGTCSC 133
+G AHL G +
Sbjct: 75 NGGAAHLPGXLAA 87
>pdb|3TRH|A Chain A, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|B Chain B, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|C Chain C, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|D Chain D, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|E Chain E, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|F Chain F, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|G Chain G, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|H Chain H, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|I Chain I, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|J Chain J, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|K Chain K, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|L Chain L, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|M Chain M, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|N Chain N, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|O Chain O, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|P Chain P, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
Length = 169
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%)
Query: 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIII 118
V I+ SD DL A L G+P+E IL H+ KE + + +A RG + I
Sbjct: 8 FVAILXGSDSDLSTXETAFTELKSLGIPFEAHILSAHRTPKETVEFVENADNRGCAVFI 66
>pdb|3ORS|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Mutase From Staphylococcus Aureus
pdb|3ORS|B Chain B, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Mutase From Staphylococcus Aureus
pdb|3ORS|C Chain C, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Mutase From Staphylococcus Aureus
pdb|3ORS|D Chain D, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Mutase From Staphylococcus Aureus
pdb|3ORS|E Chain E, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Mutase From Staphylococcus Aureus
pdb|3ORS|F Chain F, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Mutase From Staphylococcus Aureus
pdb|3ORS|G Chain G, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Mutase From Staphylococcus Aureus
pdb|3ORS|H Chain H, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Mutase From Staphylococcus Aureus
Length = 163
Score = 39.3 bits (90), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 44/79 (55%)
Query: 56 TDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIK 115
++A V +IM S D +M ++ L F +PYE +++ H+ K + +A A+ERGI
Sbjct: 1 SNAMKVAVIMGSSSDWKIMQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGIN 60
Query: 116 IIIVGDGVEAHLSGTCSCC 134
III G G AHL G +
Sbjct: 61 IIIAGAGGAAHLPGMVASL 79
>pdb|2YWX|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Methanocaldococcus
Jannaschii
Length = 157
Score = 33.5 bits (75), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 63 IIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 122
IIM S+ DL + A L +FGV +E+++ H+ + ++K + I G
Sbjct: 4 IIMGSESDLKIAEKAVNILKEFGVEFEVRVASAHRTPELVEEIVKNSKA---DVFIAIAG 60
Query: 123 VEAHLSGTCSCC 134
+ AHL G +
Sbjct: 61 LAAHLPGVVASL 72
>pdb|3RGG|A Chain A, Crystal Structure Of Treponema Denticola Pure Bound To Air
pdb|3RGG|B Chain B, Crystal Structure Of Treponema Denticola Pure Bound To Air
pdb|3RGG|C Chain C, Crystal Structure Of Treponema Denticola Pure Bound To Air
pdb|3RGG|D Chain D, Crystal Structure Of Treponema Denticola Pure Bound To Air
Length = 159
Score = 29.6 bits (65), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALS 104
P+V I+M S D+ A L FG+ Y I+I H+ + +S
Sbjct: 3 PLVIILMGSSSDMGHAEKIASELKTFGIEYAIRIGSAHKTAEHVVS 48
>pdb|3RG8|A Chain A, Crystal Structure Of Treponema Denticola Pure
pdb|3RG8|B Chain B, Crystal Structure Of Treponema Denticola Pure
pdb|3RG8|C Chain C, Crystal Structure Of Treponema Denticola Pure
pdb|3RG8|D Chain D, Crystal Structure Of Treponema Denticola Pure
pdb|3RG8|E Chain E, Crystal Structure Of Treponema Denticola Pure
pdb|3RG8|F Chain F, Crystal Structure Of Treponema Denticola Pure
pdb|3RG8|G Chain G, Crystal Structure Of Treponema Denticola Pure
pdb|3RG8|H Chain H, Crystal Structure Of Treponema Denticola Pure
Length = 159
Score = 29.6 bits (65), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALS 104
P+V I+M S D+ A L FG+ Y I+I H+ + +S
Sbjct: 3 PLVIILMGSSSDMGHAEKIASELKTFGIEYAIRIGSAHKTAEHVVS 48
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 28.9 bits (63), Expect = 1.1, Method: Composition-based stats.
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 77 AARTLSDFGVPYEIKILPPH 96
AAR S+FGV I +LPPH
Sbjct: 522 AARIQSEFGVTAAIDLLPPH 541
>pdb|2ZSG|A Chain A, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
pdb|2ZSG|B Chain B, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
Length = 359
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 9/43 (20%)
Query: 83 DFGVPYE---------IKILPPHQNCKEALSYALSAKERGIKI 116
DFG YE + I P KE S L A+ER +KI
Sbjct: 218 DFGATYENYCADITRVVSIGEPSDEVKEVHSIVLEAQERALKI 260
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,166,355
Number of Sequences: 62578
Number of extensions: 157432
Number of successful extensions: 276
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 248
Number of HSP's gapped (non-prelim): 31
length of query: 147
length of database: 14,973,337
effective HSP length: 90
effective length of query: 57
effective length of database: 9,341,317
effective search space: 532455069
effective search space used: 532455069
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.7 bits)