Query 032094
Match_columns 147
No_of_seqs 217 out of 1111
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 09:30:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032094.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032094hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0041 PurE Phosphoribosylcar 100.0 4.9E-34 1.1E-38 224.8 9.8 79 60-138 4-82 (162)
2 PLN02948 phosphoribosylaminoim 100.0 9.7E-32 2.1E-36 243.7 12.3 123 5-138 368-490 (577)
3 TIGR01162 purE phosphoribosyla 100.0 1.4E-30 3E-35 204.9 9.1 78 61-138 1-78 (156)
4 PF00731 AIRC: AIR carboxylase 100.0 5.4E-30 1.2E-34 200.2 8.0 80 59-138 1-80 (150)
5 COG1691 NCAIR mutase (PurE)-re 99.6 1.2E-15 2.6E-20 127.4 9.1 83 52-138 111-197 (254)
6 KOG2835 Phosphoribosylamidoimi 99.2 5.7E-12 1.2E-16 110.8 1.2 111 15-138 178-288 (373)
7 KOG2835 Phosphoribosylamidoimi 98.4 1.5E-07 3.2E-12 83.2 2.8 98 4-140 219-317 (373)
8 PRK10076 pyruvate formate lyas 95.9 0.029 6.3E-07 45.8 6.9 86 18-118 105-211 (213)
9 cd08170 GlyDH Glycerol dehydro 95.3 0.084 1.8E-06 45.0 7.8 67 59-125 23-89 (351)
10 cd08550 GlyDH-like Glycerol_de 95.1 0.094 2E-06 44.9 7.4 73 60-132 24-97 (349)
11 cd08185 Fe-ADH1 Iron-containin 94.6 0.18 3.9E-06 43.6 7.9 68 59-126 26-96 (380)
12 PF06258 Mito_fiss_Elm1: Mitoc 94.5 0.26 5.6E-06 42.4 8.6 120 6-145 111-241 (311)
13 cd08183 Fe-ADH2 Iron-containin 93.9 0.27 5.8E-06 42.6 7.5 66 59-126 23-88 (374)
14 cd08551 Fe-ADH iron-containing 93.9 0.26 5.7E-06 42.3 7.4 74 59-132 24-100 (370)
15 cd08171 GlyDH-like2 Glycerol d 93.7 0.26 5.7E-06 42.2 7.0 67 59-125 23-90 (345)
16 cd08195 DHQS Dehydroquinate sy 93.7 0.47 1E-05 40.6 8.5 75 59-133 25-106 (345)
17 PRK09423 gldA glycerol dehydro 93.6 0.37 7.9E-06 41.6 7.8 73 60-132 31-104 (366)
18 cd08175 G1PDH Glycerol-1-phosp 93.3 0.39 8.6E-06 41.0 7.4 65 60-125 25-92 (348)
19 TIGR01357 aroB 3-dehydroquinat 93.2 0.61 1.3E-05 39.8 8.4 75 59-133 21-102 (344)
20 PRK00843 egsA NAD(P)-dependent 93.2 0.55 1.2E-05 40.4 8.2 72 60-133 36-108 (350)
21 cd03028 GRX_PICOT_like Glutare 93.0 0.66 1.4E-05 32.3 7.1 58 60-119 9-70 (90)
22 cd08186 Fe-ADH8 Iron-containin 93.0 0.39 8.4E-06 41.8 7.0 67 60-126 28-97 (383)
23 cd08176 LPO Lactadehyde:propan 92.8 0.34 7.4E-06 42.0 6.5 66 60-125 30-97 (377)
24 cd08182 HEPD Hydroxyethylphosp 92.8 0.47 1E-05 40.8 7.3 71 60-132 25-97 (367)
25 cd08194 Fe-ADH6 Iron-containin 92.7 0.46 1E-05 41.1 7.1 67 60-126 25-93 (375)
26 TIGR00365 monothiol glutaredox 92.5 0.92 2E-05 32.4 7.3 59 59-119 12-74 (97)
27 cd08178 AAD_C C-terminal alcoh 92.3 0.47 1E-05 41.5 6.7 68 59-126 22-91 (398)
28 PRK00002 aroB 3-dehydroquinate 92.2 1 2.3E-05 38.8 8.6 74 59-132 32-112 (358)
29 TIGR02638 lactal_redase lactal 92.1 0.49 1.1E-05 41.1 6.6 67 60-126 31-99 (379)
30 PF00465 Fe-ADH: Iron-containi 92.1 0.37 8E-06 41.3 5.7 65 60-125 23-90 (366)
31 cd08187 BDH Butanol dehydrogen 92.0 0.54 1.2E-05 40.8 6.6 68 59-126 29-99 (382)
32 cd08197 DOIS 2-deoxy-scyllo-in 92.0 1.1 2.4E-05 39.0 8.6 75 59-133 24-105 (355)
33 cd08181 PPD-like 1,3-propanedi 91.8 0.63 1.4E-05 40.1 6.9 68 59-126 26-96 (357)
34 PF00763 THF_DHG_CYH: Tetrahyd 91.8 0.57 1.2E-05 34.7 5.7 53 59-111 31-84 (117)
35 cd08173 Gro1PDH Sn-glycerol-1- 91.7 1.1 2.5E-05 38.1 8.2 71 60-132 27-98 (339)
36 cd08192 Fe-ADH7 Iron-containin 91.5 0.74 1.6E-05 39.6 7.0 66 60-125 26-93 (370)
37 cd03786 GT1_UDP-GlcNAc_2-Epime 91.3 1.1 2.4E-05 36.8 7.5 42 60-101 1-43 (363)
38 cd08188 Fe-ADH4 Iron-containin 91.2 0.85 1.8E-05 39.6 7.0 66 60-125 30-97 (377)
39 cd08189 Fe-ADH5 Iron-containin 91.2 0.86 1.9E-05 39.4 7.0 67 60-126 28-96 (374)
40 cd08179 NADPH_BDH NADPH-depend 91.1 0.85 1.8E-05 39.5 7.0 66 60-125 25-93 (375)
41 PRK10624 L-1,2-propanediol oxi 91.0 0.8 1.7E-05 39.8 6.7 66 60-125 32-99 (382)
42 PRK11914 diacylglycerol kinase 90.8 1.1 2.3E-05 37.4 7.0 71 60-134 10-84 (306)
43 cd08193 HVD 5-hydroxyvalerate 90.6 0.86 1.9E-05 39.4 6.5 67 60-126 28-96 (376)
44 cd07766 DHQ_Fe-ADH Dehydroquin 90.4 1.6 3.5E-05 36.7 7.9 74 60-134 25-100 (332)
45 TIGR03702 lip_kinase_YegS lipi 90.4 1.1 2.5E-05 37.2 6.8 70 62-135 4-73 (293)
46 cd08190 HOT Hydroxyacid-oxoaci 90.2 1.5 3.3E-05 38.7 7.8 67 60-126 25-93 (414)
47 cd08199 EEVS 2-epi-5-epi-valio 90.2 2.1 4.6E-05 37.3 8.6 75 59-133 27-109 (354)
48 PF10096 DUF2334: Uncharacteri 90.1 1.1 2.4E-05 37.0 6.5 52 68-119 12-74 (243)
49 PRK15454 ethanol dehydrogenase 89.8 0.82 1.8E-05 40.3 5.8 66 60-125 51-118 (395)
50 PRK09860 putative alcohol dehy 89.0 1.1 2.5E-05 39.1 6.1 66 60-125 33-100 (383)
51 cd08549 G1PDH_related Glycerol 89.0 2 4.3E-05 36.7 7.4 73 60-133 26-101 (332)
52 PF13407 Peripla_BP_4: Peripla 88.7 7.1 0.00015 30.3 9.8 73 61-134 1-76 (257)
53 PRK01372 ddl D-alanine--D-alan 88.6 1.6 3.4E-05 35.8 6.4 68 59-134 5-81 (304)
54 COG0695 GrxC Glutaredoxin and 88.5 2.1 4.5E-05 29.6 6.0 51 67-118 7-59 (80)
55 cd03027 GRX_DEP Glutaredoxin ( 88.4 5.2 0.00011 26.2 7.7 55 60-118 2-57 (73)
56 PRK10653 D-ribose transporter 88.4 6.6 0.00014 31.6 9.7 66 57-124 25-93 (295)
57 PLN02834 3-dehydroquinate synt 87.9 3.2 6.8E-05 37.4 8.3 75 59-133 101-184 (433)
58 cd01988 Na_H_Antiporter_C The 87.7 2.5 5.3E-05 29.4 6.1 60 72-134 56-115 (132)
59 cd01391 Periplasmic_Binding_Pr 87.6 4.9 0.00011 29.7 7.9 64 61-124 2-69 (269)
60 PRK13055 putative lipid kinase 87.4 2 4.3E-05 36.7 6.4 67 66-135 14-80 (334)
61 PRK13337 putative lipid kinase 87.2 1.8 3.8E-05 36.3 5.9 66 66-135 13-78 (304)
62 PRK15138 aldehyde reductase; P 87.0 1.8 3.9E-05 37.9 6.1 66 59-126 30-98 (387)
63 cd01539 PBP1_GGBP Periplasmic 86.7 7 0.00015 31.8 9.0 73 60-132 1-76 (303)
64 PF00462 Glutaredoxin: Glutare 86.4 2.4 5.2E-05 26.8 5.0 48 69-118 7-55 (60)
65 cd00860 ThrRS_anticodon ThrRS 86.3 5.3 0.00012 26.5 6.9 58 60-122 3-60 (91)
66 cd08191 HHD 6-hydroxyhexanoate 86.3 3 6.5E-05 36.3 7.1 64 60-125 24-91 (386)
67 PF04392 ABC_sub_bind: ABC tra 86.1 4.3 9.3E-05 33.5 7.6 65 60-124 1-70 (294)
68 PRK13054 lipid kinase; Reviewe 86.0 4.5 9.8E-05 33.7 7.8 61 71-135 17-77 (300)
69 cd08177 MAR Maleylacetate redu 85.2 2.4 5.1E-05 36.2 5.8 72 60-132 25-97 (337)
70 cd01452 VWA_26S_proteasome_sub 85.0 14 0.0003 29.9 9.8 73 59-131 108-183 (187)
71 PRK10703 DNA-binding transcrip 84.6 5 0.00011 32.8 7.2 92 27-122 30-124 (341)
72 PRK10014 DNA-binding transcrip 84.1 9.3 0.0002 31.1 8.6 92 28-123 36-130 (342)
73 PRK00861 putative lipid kinase 84.0 2.7 5.9E-05 34.9 5.5 66 66-136 14-79 (300)
74 cd08180 PDD 1,3-propanediol de 83.5 5 0.00011 34.1 7.0 66 60-126 24-91 (332)
75 cd06318 PBP1_ABC_sugar_binding 83.1 16 0.00035 28.5 9.3 63 60-124 1-66 (282)
76 cd06305 PBP1_methylthioribose_ 82.5 15 0.00032 28.5 8.8 70 60-131 1-73 (273)
77 COG1454 EutG Alcohol dehydroge 81.8 6.8 0.00015 35.1 7.4 67 60-126 31-99 (377)
78 COG2984 ABC-type uncharacteriz 81.0 5.5 0.00012 35.2 6.5 65 61-125 33-100 (322)
79 cd03418 GRX_GRXb_1_3_like Glut 80.9 11 0.00023 24.3 6.5 49 69-119 8-58 (75)
80 PLN02958 diacylglycerol kinase 80.9 10 0.00022 34.5 8.4 101 19-135 84-189 (481)
81 cd04795 SIS SIS domain. SIS (S 80.6 13 0.00029 24.2 7.4 29 90-118 51-79 (87)
82 TIGR02417 fruct_sucro_rep D-fr 79.8 15 0.00032 29.8 8.3 91 28-122 32-125 (327)
83 PRK10423 transcriptional repre 79.8 14 0.00031 29.8 8.1 92 27-122 27-121 (327)
84 cd08169 DHQ-like Dehydroquinat 79.3 13 0.00029 32.1 8.3 73 59-133 24-104 (344)
85 cd06321 PBP1_ABC_sugar_binding 79.1 23 0.00049 27.6 8.9 62 61-122 2-66 (271)
86 cd05212 NAD_bind_m-THF_DH_Cycl 78.6 4.1 8.9E-05 31.3 4.4 55 60-126 30-84 (140)
87 cd06273 PBP1_GntR_like_1 This 78.6 26 0.00056 27.1 9.0 59 61-121 2-63 (268)
88 cd07943 DRE_TIM_HOA 4-hydroxy- 78.6 14 0.00029 30.5 7.8 67 61-129 102-169 (263)
89 cd08172 GlyDH-like1 Glycerol d 78.6 4.9 0.00011 34.4 5.3 71 60-133 25-97 (347)
90 PF01380 SIS: SIS domain SIS d 78.6 20 0.00042 25.2 7.7 63 60-123 6-89 (131)
91 PRK05447 1-deoxy-D-xylulose 5- 78.6 13 0.00029 33.5 8.2 62 73-134 13-112 (385)
92 PRK10586 putative oxidoreducta 78.6 9.4 0.0002 33.3 7.2 63 60-125 36-98 (362)
93 TIGR00147 lipid kinase, YegS/R 78.4 8.3 0.00018 31.7 6.5 65 66-134 13-77 (293)
94 cd03174 DRE_TIM_metallolyase D 78.2 12 0.00027 29.8 7.3 49 70-118 113-164 (265)
95 PF02882 THF_DHG_CYH_C: Tetrah 78.2 2.4 5.2E-05 33.5 3.1 61 59-130 36-96 (160)
96 PRK13805 bifunctional acetalde 77.9 8.3 0.00018 37.3 7.2 65 59-125 481-551 (862)
97 cd01542 PBP1_TreR_like Ligand- 77.9 24 0.00052 27.1 8.6 60 61-122 2-64 (259)
98 PRK11303 DNA-binding transcrip 77.8 17 0.00037 29.4 8.1 92 27-122 32-126 (328)
99 PRK14180 bifunctional 5,10-met 77.8 3.1 6.6E-05 35.9 3.8 52 73-129 141-217 (282)
100 cd06311 PBP1_ABC_sugar_binding 77.5 30 0.00065 27.0 9.1 67 61-127 2-74 (274)
101 PRK14177 bifunctional 5,10-met 77.1 7.2 0.00016 33.7 5.9 53 58-110 34-87 (284)
102 PRK14177 bifunctional 5,10-met 76.7 3.7 8E-05 35.5 4.0 52 73-129 142-218 (284)
103 COG1597 LCB5 Sphingosine kinas 76.6 9.1 0.0002 32.6 6.4 66 66-135 14-79 (301)
104 PRK10727 DNA-binding transcrip 76.1 21 0.00045 29.3 8.2 92 27-122 30-124 (343)
105 PRK13059 putative lipid kinase 76.0 9 0.00019 32.0 6.1 65 66-135 13-77 (295)
106 PRK14190 bifunctional 5,10-met 75.9 8.5 0.00018 33.2 6.0 53 59-111 34-87 (284)
107 cd06283 PBP1_RegR_EndR_KdgR_li 75.4 32 0.00069 26.4 8.7 60 61-122 2-64 (267)
108 PF03129 HGTP_anticodon: Antic 75.1 16 0.00034 24.7 6.2 55 61-120 2-59 (94)
109 cd08184 Fe-ADH3 Iron-containin 74.8 16 0.00035 31.8 7.6 63 60-125 27-93 (347)
110 cd07381 MPP_CapA CapA and rela 74.7 8.6 0.00019 30.8 5.5 67 71-143 161-234 (239)
111 PF13528 Glyco_trans_1_3: Glyc 74.4 20 0.00043 29.1 7.6 58 57-124 191-261 (318)
112 TIGR00236 wecB UDP-N-acetylglu 74.4 18 0.00039 30.2 7.5 71 59-135 30-108 (365)
113 PRK08862 short chain dehydroge 74.2 24 0.00052 27.9 7.9 27 97-123 64-93 (227)
114 cd06296 PBP1_CatR_like Ligand- 74.0 39 0.00084 26.1 9.0 61 61-123 2-65 (270)
115 cd00859 HisRS_anticodon HisRS 73.9 21 0.00045 23.0 6.6 56 60-120 3-58 (91)
116 cd08174 G1PDH-like Glycerol-1- 73.6 14 0.0003 31.4 6.7 69 59-134 26-97 (331)
117 cd06320 PBP1_allose_binding Pe 73.4 31 0.00067 26.9 8.2 62 61-122 2-66 (275)
118 PRK12361 hypothetical protein; 73.3 9.1 0.0002 34.8 5.9 66 66-136 254-319 (547)
119 PRK14168 bifunctional 5,10-met 73.2 5.2 0.00011 34.7 4.1 52 73-129 144-224 (297)
120 PRK14187 bifunctional 5,10-met 73.1 4.9 0.00011 34.9 3.9 52 73-129 143-219 (294)
121 PRK14987 gluconate operon tran 73.0 22 0.00047 29.0 7.5 90 27-120 34-126 (331)
122 TIGR02181 GRX_bact Glutaredoxi 72.9 19 0.00042 23.6 6.0 50 68-119 6-56 (79)
123 PRK14186 bifunctional 5,10-met 72.8 4.9 0.00011 34.9 3.9 52 73-129 141-217 (297)
124 cd01538 PBP1_ABC_xylose_bindin 72.8 41 0.00089 26.8 9.0 62 61-124 2-66 (288)
125 PRK14172 bifunctional 5,10-met 72.7 5.1 0.00011 34.5 3.9 35 90-129 183-217 (278)
126 PRK13057 putative lipid kinase 72.4 13 0.00027 30.8 6.1 59 72-135 13-71 (287)
127 cd06280 PBP1_LacI_like_4 Ligan 72.0 41 0.00088 26.1 8.6 59 61-121 2-63 (263)
128 PLN02616 tetrahydrofolate dehy 72.0 5 0.00011 36.0 3.8 52 73-129 214-290 (364)
129 cd00861 ProRS_anticodon_short 71.9 16 0.00034 24.6 5.5 57 60-121 3-62 (94)
130 cd05014 SIS_Kpsf KpsF-like pro 71.7 33 0.00071 24.3 8.5 67 63-129 4-90 (128)
131 cd07025 Peptidase_S66 LD-Carbo 71.5 15 0.00033 30.8 6.4 57 70-126 12-75 (282)
132 cd06300 PBP1_ABC_sugar_binding 71.3 45 0.00098 25.9 8.7 65 61-125 2-72 (272)
133 cd06286 PBP1_CcpB_like Ligand- 71.2 42 0.00092 25.8 8.5 59 61-121 2-63 (260)
134 TIGR01205 D_ala_D_alaTIGR D-al 70.8 27 0.00058 28.7 7.6 73 60-134 1-88 (315)
135 PRK14172 bifunctional 5,10-met 70.7 14 0.00029 31.9 6.1 52 59-110 34-86 (278)
136 cd00858 GlyRS_anticodon GlyRS 70.6 27 0.00058 25.3 6.8 57 59-121 27-85 (121)
137 PRK11041 DNA-binding transcrip 70.4 24 0.00053 28.1 7.2 89 28-120 7-98 (309)
138 PRK05867 short chain dehydroge 70.3 37 0.0008 26.6 8.1 42 59-106 9-50 (253)
139 cd01541 PBP1_AraR Ligand-bindi 70.3 46 0.001 25.9 8.6 61 61-123 2-65 (273)
140 cd06298 PBP1_CcpA_like Ligand- 70.3 45 0.00097 25.6 8.4 60 61-122 2-64 (268)
141 PLN02516 methylenetetrahydrofo 70.3 5.8 0.00013 34.5 3.8 51 73-128 150-225 (299)
142 PRK14167 bifunctional 5,10-met 70.0 12 0.00026 32.5 5.6 52 59-110 33-85 (297)
143 PF02006 DUF137: Protein of un 69.9 16 0.00035 29.9 6.0 57 74-132 20-77 (178)
144 cd06293 PBP1_LacI_like_11 Liga 69.6 49 0.0011 25.7 8.6 59 61-121 2-63 (269)
145 cd06275 PBP1_PurR Ligand-bindi 69.6 49 0.0011 25.5 8.5 60 61-122 2-64 (269)
146 PRK10329 glutaredoxin-like pro 69.5 33 0.00071 23.5 6.8 41 64-107 5-45 (81)
147 PRK06203 aroB 3-dehydroquinate 69.5 23 0.0005 31.4 7.4 76 59-134 43-133 (389)
148 PRK00286 xseA exodeoxyribonucl 69.4 31 0.00067 30.5 8.2 99 25-125 102-204 (438)
149 cd00738 HGTP_anticodon HGTP an 69.3 25 0.00054 23.3 6.0 57 60-121 3-62 (94)
150 cd04740 DHOD_1B_like Dihydroor 69.2 46 0.00099 27.6 8.8 36 59-96 91-127 (296)
151 PRK14170 bifunctional 5,10-met 69.1 7.1 0.00015 33.7 4.0 35 90-129 182-216 (284)
152 PF03853 YjeF_N: YjeF-related 69.0 40 0.00088 26.0 7.9 60 57-116 24-84 (169)
153 PRK14166 bifunctional 5,10-met 69.0 7 0.00015 33.7 4.0 52 73-129 140-216 (282)
154 cd06292 PBP1_LacI_like_10 Liga 69.0 49 0.0011 25.7 8.5 59 61-121 2-63 (273)
155 cd06310 PBP1_ABC_sugar_binding 69.0 37 0.0008 26.3 7.8 62 60-123 1-67 (273)
156 TIGR02194 GlrX_NrdH Glutaredox 68.9 20 0.00043 23.4 5.4 40 65-107 4-43 (72)
157 PRK08195 4-hyroxy-2-oxovalerat 68.7 29 0.00064 30.1 7.8 61 65-126 108-169 (337)
158 TIGR01481 ccpA catabolite cont 68.6 34 0.00074 27.6 7.8 91 27-121 30-123 (329)
159 PRK10401 DNA-binding transcrip 68.4 40 0.00087 27.7 8.2 91 27-121 30-123 (346)
160 cd05008 SIS_GlmS_GlmD_1 SIS (S 68.4 39 0.00084 23.8 8.5 67 63-129 3-89 (126)
161 TIGR02190 GlrX-dom Glutaredoxi 68.3 23 0.00051 23.6 5.7 34 59-94 8-41 (79)
162 cd01540 PBP1_arabinose_binding 68.3 40 0.00087 26.5 7.9 59 61-122 2-63 (289)
163 PRK14186 bifunctional 5,10-met 68.2 21 0.00046 31.0 6.8 52 59-110 34-86 (297)
164 cd03031 GRX_GRX_like Glutaredo 68.1 22 0.00049 27.6 6.3 49 69-119 14-67 (147)
165 PRK14166 bifunctional 5,10-met 68.0 15 0.00033 31.6 5.8 52 59-110 32-84 (282)
166 PRK14182 bifunctional 5,10-met 68.0 7.5 0.00016 33.5 3.9 52 73-129 140-216 (282)
167 PF02016 Peptidase_S66: LD-car 68.0 26 0.00057 29.5 7.2 66 61-126 1-75 (284)
168 cd06323 PBP1_ribose_binding Pe 67.9 44 0.00095 25.6 7.9 59 61-121 2-63 (268)
169 PRK12757 cell division protein 67.7 69 0.0015 27.5 9.6 65 59-123 183-256 (256)
170 PRK14173 bifunctional 5,10-met 67.4 7.9 0.00017 33.5 4.0 35 90-129 180-214 (287)
171 PRK09492 treR trehalose repres 67.4 40 0.00087 27.1 7.9 91 27-121 33-126 (315)
172 KOG1208 Dehydrogenases with di 67.3 18 0.00039 31.3 6.2 47 57-109 33-79 (314)
173 cd01537 PBP1_Repressors_Sugar_ 67.2 51 0.0011 24.7 10.1 66 61-128 2-70 (264)
174 cd01987 USP_OKCHK USP domain i 67.1 29 0.00063 24.1 6.3 62 72-138 49-110 (124)
175 TIGR03566 FMN_reduc_MsuE FMN r 66.9 42 0.00091 25.7 7.6 57 60-120 1-75 (174)
176 cd03059 GST_N_SspA GST_N famil 66.8 13 0.00028 23.6 4.1 33 70-102 8-40 (73)
177 cd06302 PBP1_LsrB_Quorum_Sensi 66.8 56 0.0012 26.3 8.7 62 60-123 1-66 (298)
178 PRK14169 bifunctional 5,10-met 66.7 8.1 0.00018 33.3 3.9 35 90-129 181-215 (282)
179 PRK14180 bifunctional 5,10-met 66.1 24 0.00051 30.5 6.6 52 59-110 33-85 (282)
180 cd02977 ArsC_family Arsenate R 66.0 18 0.0004 25.4 5.1 41 69-109 7-48 (105)
181 KOG3857 Alcohol dehydrogenase, 65.6 14 0.0003 33.9 5.2 74 60-133 72-147 (465)
182 cd08196 DHQS-like1 Dehydroquin 65.4 35 0.00075 29.8 7.6 72 59-134 20-98 (346)
183 cd01989 STK_N The N-terminal d 65.4 27 0.0006 24.9 6.0 54 75-131 68-121 (146)
184 TIGR02955 TMAO_TorT TMAO reduc 65.2 58 0.0013 26.2 8.4 61 61-123 2-67 (295)
185 cd03060 GST_N_Omega_like GST_N 65.0 17 0.00036 23.5 4.4 34 69-102 7-40 (71)
186 PRK14188 bifunctional 5,10-met 65.0 30 0.00066 29.9 7.1 52 59-110 34-86 (296)
187 cd00293 USP_Like Usp: Universa 64.9 35 0.00076 22.7 6.1 48 84-135 68-115 (130)
188 cd07937 DRE_TIM_PC_TC_5S Pyruv 64.8 43 0.00093 28.0 7.8 66 61-127 107-175 (275)
189 COG0371 GldA Glycerol dehydrog 64.7 24 0.00052 31.6 6.5 66 59-125 31-96 (360)
190 PRK14171 bifunctional 5,10-met 64.3 32 0.00069 29.8 7.1 52 59-110 34-86 (288)
191 PRK14189 bifunctional 5,10-met 64.2 21 0.00046 30.8 6.0 53 59-111 34-87 (285)
192 cd07944 DRE_TIM_HOA_like 4-hyd 64.2 31 0.00067 28.8 6.8 52 66-117 103-155 (266)
193 TIGR00677 fadh2_euk methylenet 64.1 51 0.0011 28.0 8.2 66 60-125 32-99 (281)
194 PTZ00062 glutaredoxin; Provisi 64.0 47 0.001 27.1 7.7 58 60-119 114-175 (204)
195 cd03522 MoeA_like MoeA_like. T 63.8 52 0.0011 28.6 8.3 67 57-125 158-231 (312)
196 PLN02204 diacylglycerol kinase 63.5 50 0.0011 31.6 8.7 101 19-134 131-238 (601)
197 PRK14169 bifunctional 5,10-met 63.3 31 0.00067 29.8 6.8 52 59-110 32-84 (282)
198 PRK14183 bifunctional 5,10-met 63.3 12 0.00025 32.4 4.2 35 90-129 182-216 (281)
199 PRK13761 hypothetical protein; 63.3 23 0.0005 30.4 5.9 64 64-131 74-137 (248)
200 PF01522 Polysacc_deac_1: Poly 63.2 21 0.00046 24.8 4.9 59 60-122 6-64 (123)
201 PRK14171 bifunctional 5,10-met 63.1 11 0.00023 32.7 4.0 34 90-128 184-217 (288)
202 PRK14174 bifunctional 5,10-met 63.0 31 0.00066 29.9 6.7 52 59-110 33-85 (295)
203 cd06308 PBP1_sensor_kinase_lik 62.9 71 0.0015 24.9 9.2 62 60-123 1-66 (270)
204 PRK14189 bifunctional 5,10-met 62.7 10 0.00022 32.7 3.8 35 90-129 183-217 (285)
205 cd02810 DHOD_DHPD_FMN Dihydroo 62.5 61 0.0013 26.6 8.2 37 58-96 99-136 (289)
206 TIGR02189 GlrX-like_plant Glut 62.4 45 0.00098 23.6 6.5 36 60-97 9-44 (99)
207 PRK14191 bifunctional 5,10-met 62.3 33 0.00071 29.7 6.8 52 59-110 33-85 (285)
208 TIGR02180 GRX_euk Glutaredoxin 62.3 26 0.00057 22.6 5.0 53 67-119 5-61 (84)
209 PLN02897 tetrahydrofolate dehy 62.3 10 0.00022 33.8 3.8 52 73-129 197-273 (345)
210 PRK14193 bifunctional 5,10-met 62.2 12 0.00026 32.3 4.1 35 90-129 185-219 (284)
211 TIGR03590 PseG pseudaminic aci 62.0 23 0.0005 29.3 5.7 33 59-92 171-204 (279)
212 cd06270 PBP1_GalS_like Ligand 62.0 73 0.0016 24.7 8.4 59 61-121 2-63 (268)
213 cd06281 PBP1_LacI_like_5 Ligan 62.0 73 0.0016 24.8 8.2 61 61-123 2-65 (269)
214 PRK10824 glutaredoxin-4; Provi 61.9 56 0.0012 24.4 7.2 58 60-120 16-78 (115)
215 cd07062 Peptidase_S66_mccF_lik 61.7 44 0.00096 28.4 7.4 67 60-126 2-79 (308)
216 PRK14190 bifunctional 5,10-met 61.6 14 0.0003 31.9 4.4 51 73-128 141-216 (284)
217 cd03036 ArsC_like Arsenate Red 61.5 22 0.00048 25.6 4.9 38 71-108 9-47 (111)
218 TIGR03217 4OH_2_O_val_ald 4-hy 61.4 58 0.0013 28.3 8.2 63 61-125 104-167 (333)
219 PRK14176 bifunctional 5,10-met 61.4 40 0.00086 29.2 7.1 52 59-110 40-92 (287)
220 TIGR02405 trehalos_R_Ecol treh 61.3 60 0.0013 26.3 7.9 90 27-120 30-122 (311)
221 PF13685 Fe-ADH_2: Iron-contai 61.2 14 0.00031 31.0 4.3 76 60-135 21-98 (250)
222 cd03045 GST_N_Delta_Epsilon GS 61.2 14 0.0003 23.6 3.4 36 72-107 10-45 (74)
223 PRK14181 bifunctional 5,10-met 61.1 33 0.00072 29.7 6.6 52 59-110 28-80 (287)
224 PRK09526 lacI lac repressor; R 61.1 51 0.0011 26.8 7.4 90 27-120 34-127 (342)
225 TIGR03405 Phn_Fe-ADH phosphona 61.0 27 0.00058 30.1 6.1 63 60-126 25-93 (355)
226 PRK11145 pflA pyruvate formate 61.0 56 0.0012 26.1 7.6 15 77-91 153-167 (246)
227 PRK14173 bifunctional 5,10-met 60.8 35 0.00076 29.5 6.7 52 59-110 31-83 (287)
228 PRK14179 bifunctional 5,10-met 60.8 39 0.00084 29.2 7.0 52 59-110 34-86 (284)
229 PRK14170 bifunctional 5,10-met 60.6 25 0.00054 30.4 5.7 51 59-109 33-84 (284)
230 cd08198 DHQS-like2 Dehydroquin 60.5 46 0.001 29.5 7.6 76 59-134 31-121 (369)
231 PRK14193 bifunctional 5,10-met 60.4 34 0.00074 29.6 6.5 52 59-110 34-86 (284)
232 PHA03050 glutaredoxin; Provisi 60.4 44 0.00095 24.3 6.3 58 60-119 14-76 (108)
233 cd06315 PBP1_ABC_sugar_binding 60.4 84 0.0018 24.9 8.7 61 60-122 2-65 (280)
234 PRK10792 bifunctional 5,10-met 60.3 11 0.00023 32.6 3.5 35 90-129 184-218 (285)
235 PRK10426 alpha-glucosidase; Pr 60.3 40 0.00086 32.0 7.5 87 21-121 182-290 (635)
236 cd06289 PBP1_MalI_like Ligand- 60.0 76 0.0016 24.3 9.1 66 61-128 2-70 (268)
237 smart00854 PGA_cap Bacterial c 59.3 30 0.00064 27.9 5.7 68 70-143 158-232 (239)
238 TIGR00236 wecB UDP-N-acetylglu 59.1 24 0.00053 29.4 5.4 58 60-120 2-60 (365)
239 cd06290 PBP1_LacI_like_9 Ligan 59.0 81 0.0018 24.3 8.8 61 61-123 2-65 (265)
240 TIGR00676 fadh2 5,10-methylene 58.9 55 0.0012 27.3 7.4 53 73-125 46-98 (272)
241 cd01575 PBP1_GntR Ligand-bindi 58.7 80 0.0017 24.1 8.4 61 61-123 2-65 (268)
242 PRK14168 bifunctional 5,10-met 58.5 41 0.0009 29.2 6.8 52 59-110 35-87 (297)
243 cd03032 ArsC_Spx Arsenate Redu 58.5 22 0.00047 25.7 4.4 41 69-109 8-49 (115)
244 PF04028 DUF374: Domain of unk 57.9 52 0.0011 22.9 6.0 59 59-122 10-68 (74)
245 PRK14184 bifunctional 5,10-met 57.8 19 0.00041 31.2 4.5 51 73-128 140-219 (286)
246 PRK14178 bifunctional 5,10-met 57.7 47 0.001 28.6 6.9 52 59-110 28-80 (279)
247 COG0337 AroB 3-dehydroquinate 57.7 66 0.0014 28.9 8.1 74 60-133 35-115 (360)
248 cd03419 GRX_GRXh_1_2_like Glut 57.6 49 0.0011 21.3 5.7 39 68-106 7-45 (82)
249 PRK09432 metF 5,10-methylenete 57.4 49 0.0011 28.3 7.0 54 72-125 69-122 (296)
250 PF00682 HMGL-like: HMGL-like 57.2 51 0.0011 26.2 6.7 65 60-125 82-161 (237)
251 PRK14175 bifunctional 5,10-met 57.1 40 0.00086 29.1 6.4 53 59-111 34-87 (286)
252 cd03029 GRX_hybridPRX5 Glutare 56.9 31 0.00067 22.3 4.6 30 67-96 7-36 (72)
253 COG1103 Archaea-specific pyrid 56.8 13 0.00029 33.2 3.5 33 57-89 155-190 (382)
254 PRK11175 universal stress prot 56.8 54 0.0012 26.6 6.9 59 75-136 72-130 (305)
255 smart00642 Aamy Alpha-amylase 56.7 52 0.0011 25.6 6.5 49 69-118 16-88 (166)
256 PF11965 DUF3479: Domain of un 56.3 45 0.00097 26.7 6.2 59 60-120 2-64 (164)
257 PRK14453 chloramphenicol/florf 56.3 55 0.0012 28.8 7.3 65 60-124 252-330 (347)
258 PRK11253 ldcA L,D-carboxypepti 56.2 62 0.0013 27.7 7.5 63 60-126 3-79 (305)
259 PRK10792 bifunctional 5,10-met 55.8 44 0.00096 28.9 6.5 52 59-110 35-87 (285)
260 TIGR02634 xylF D-xylose ABC tr 55.8 78 0.0017 25.8 7.7 60 61-123 1-64 (302)
261 PRK14467 ribosomal RNA large s 55.7 82 0.0018 27.7 8.3 63 60-122 256-327 (348)
262 cd03041 GST_N_2GST_N GST_N fam 55.6 41 0.00088 22.1 5.1 23 72-94 11-33 (77)
263 cd06301 PBP1_rhizopine_binding 55.6 94 0.002 24.0 7.8 58 61-121 2-64 (272)
264 PRK14021 bifunctional shikimat 55.6 66 0.0014 29.7 8.0 73 60-133 211-290 (542)
265 cd06322 PBP1_ABC_sugar_binding 55.5 94 0.002 24.0 8.7 59 61-121 2-63 (267)
266 PRK00061 ribH 6,7-dimethyl-8-r 55.5 39 0.00083 26.6 5.6 61 57-120 11-78 (154)
267 PRK14182 bifunctional 5,10-met 55.4 52 0.0011 28.5 6.8 52 59-110 32-84 (282)
268 PRK14184 bifunctional 5,10-met 55.3 53 0.0011 28.4 6.9 52 59-110 33-85 (286)
269 PRK14191 bifunctional 5,10-met 55.2 25 0.00055 30.4 4.9 47 73-128 169-215 (285)
270 PLN02540 methylenetetrahydrofo 55.2 50 0.0011 31.3 7.2 65 60-125 31-98 (565)
271 PRK14192 bifunctional 5,10-met 55.1 88 0.0019 26.6 8.2 54 59-112 35-89 (283)
272 PRK10936 TMAO reductase system 55.0 1.3E+02 0.0027 25.2 9.2 87 31-123 23-114 (343)
273 cd06291 PBP1_Qymf_like Ligand 55.0 96 0.0021 23.9 8.5 60 61-122 2-64 (265)
274 PRK10355 xylF D-xylose transpo 55.0 1.3E+02 0.0027 25.2 9.8 65 57-123 24-91 (330)
275 TIGR02495 NrdG2 anaerobic ribo 54.9 51 0.0011 25.1 6.1 50 64-113 131-183 (191)
276 PRK12330 oxaloacetate decarbox 54.9 84 0.0018 29.3 8.5 71 60-132 112-186 (499)
277 PRK14194 bifunctional 5,10-met 54.9 26 0.00056 30.6 4.9 53 59-111 35-88 (301)
278 PF05036 SPOR: Sporulation rel 54.8 52 0.0011 20.8 6.0 58 60-118 4-74 (76)
279 cd07948 DRE_TIM_HCS Saccharomy 54.8 65 0.0014 27.0 7.2 54 71-125 111-165 (262)
280 cd06299 PBP1_LacI_like_13 Liga 54.7 96 0.0021 23.8 8.6 60 61-122 2-64 (265)
281 TIGR03568 NeuC_NnaA UDP-N-acet 54.7 45 0.00098 28.8 6.4 41 60-100 2-43 (365)
282 cd00537 MTHFR Methylenetetrahy 54.6 65 0.0014 26.5 7.1 55 72-126 45-99 (274)
283 PRK14569 D-alanyl-alanine synt 54.6 72 0.0016 26.6 7.4 73 59-138 4-85 (296)
284 cd06303 PBP1_LuxPQ_Quorum_Sens 54.4 1.1E+02 0.0023 24.3 8.4 62 61-122 2-69 (280)
285 cd06306 PBP1_TorT-like TorT-li 54.2 97 0.0021 24.3 7.8 61 61-123 2-67 (268)
286 PRK14187 bifunctional 5,10-met 54.0 61 0.0013 28.2 7.1 52 59-110 34-86 (294)
287 PRK14040 oxaloacetate decarbox 54.0 72 0.0016 30.2 8.0 69 61-130 113-184 (593)
288 PF03358 FMN_red: NADPH-depend 53.9 84 0.0018 22.9 8.4 50 60-111 2-70 (152)
289 COG4026 Uncharacterized protei 53.7 77 0.0017 27.5 7.5 57 59-119 7-64 (290)
290 COG1879 RbsB ABC-type sugar tr 53.3 1.2E+02 0.0027 24.7 9.2 75 59-133 34-111 (322)
291 cd03035 ArsC_Yffb Arsenate Red 53.2 42 0.00091 24.2 5.2 38 71-108 9-47 (105)
292 cd06353 PBP1_BmpA_Med_like Per 53.2 97 0.0021 25.3 7.9 56 63-120 5-64 (258)
293 COG0589 UspA Universal stress 53.1 74 0.0016 22.1 6.6 60 71-133 73-133 (154)
294 cd06602 GH31_MGAM_SI_GAA This 53.0 50 0.0011 28.5 6.4 51 70-120 22-86 (339)
295 cd01536 PBP1_ABC_sugar_binding 52.9 99 0.0021 23.4 9.1 61 61-123 2-65 (267)
296 PLN02516 methylenetetrahydrofo 52.7 64 0.0014 28.1 7.0 52 59-110 41-93 (299)
297 cd02940 DHPD_FMN Dihydropyrimi 52.5 65 0.0014 27.1 6.9 53 58-111 100-165 (299)
298 PRK13600 putative ribosomal pr 52.2 30 0.00064 24.8 4.1 29 62-90 32-60 (84)
299 cd06324 PBP1_ABC_sugar_binding 52.1 1.3E+02 0.0027 24.4 8.4 59 61-121 2-66 (305)
300 PRK14185 bifunctional 5,10-met 52.1 20 0.00042 31.2 3.8 51 74-129 170-220 (293)
301 COG4002 Predicted phosphotrans 52.1 49 0.0011 28.4 6.0 20 107-127 186-205 (256)
302 PRK08085 gluconate 5-dehydroge 51.9 1E+02 0.0022 24.0 7.5 41 59-105 9-49 (254)
303 PRK07109 short chain dehydroge 51.8 1.2E+02 0.0026 25.6 8.4 41 59-105 8-48 (334)
304 PF13409 GST_N_2: Glutathione 51.8 30 0.00066 22.5 3.9 24 72-95 3-26 (70)
305 cd06312 PBP1_ABC_sugar_binding 51.6 1.1E+02 0.0023 24.0 7.6 60 61-122 2-66 (271)
306 PRK02277 orotate phosphoribosy 51.5 33 0.00072 27.4 4.8 75 64-138 20-110 (200)
307 PF10137 TIR-like: Predicted n 50.9 1.1E+02 0.0023 23.3 7.3 58 61-120 2-59 (125)
308 PRK14183 bifunctional 5,10-met 50.9 64 0.0014 27.9 6.7 52 59-110 33-85 (281)
309 cd07939 DRE_TIM_NifV Streptomy 50.8 65 0.0014 26.4 6.5 61 61-122 85-160 (259)
310 cd03061 GST_N_CLIC GST_N famil 50.6 39 0.00084 24.3 4.6 38 69-106 20-57 (91)
311 PF01866 Diphthamide_syn: Puta 50.5 30 0.00064 29.5 4.6 56 59-121 210-268 (307)
312 cd06274 PBP1_FruR Ligand bindi 50.4 1.2E+02 0.0025 23.5 8.6 61 61-123 2-65 (264)
313 PRK09627 oorA 2-oxoglutarate-a 50.3 54 0.0012 29.1 6.3 69 60-135 277-347 (375)
314 cd06282 PBP1_GntR_like_2 Ligan 50.1 1.1E+02 0.0025 23.3 8.6 61 61-123 2-65 (266)
315 cd01453 vWA_transcription_fact 49.8 89 0.0019 24.3 6.9 73 59-138 108-182 (183)
316 PF09587 PGA_cap: Bacterial ca 49.7 52 0.0011 26.6 5.7 66 75-143 171-243 (250)
317 PF06506 PrpR_N: Propionate ca 49.4 53 0.0011 25.4 5.5 56 59-121 78-133 (176)
318 COG1570 XseA Exonuclease VII, 49.4 1.4E+02 0.0031 27.6 9.0 100 23-124 100-204 (440)
319 cd06354 PBP1_BmpA_PnrA_like Pe 49.3 1.3E+02 0.0028 23.8 8.0 59 60-121 1-65 (265)
320 PRK05571 ribose-5-phosphate is 49.3 40 0.00087 26.5 4.8 73 63-135 3-87 (148)
321 PRK14194 bifunctional 5,10-met 49.3 23 0.00049 30.9 3.7 37 90-131 184-220 (301)
322 PF13241 NAD_binding_7: Putati 49.3 41 0.00088 23.8 4.5 59 17-89 31-89 (103)
323 PF14528 LAGLIDADG_3: LAGLIDAD 49.0 24 0.00052 23.3 3.1 25 68-92 28-52 (77)
324 cd06267 PBP1_LacI_sugar_bindin 48.8 1.1E+02 0.0024 22.9 8.9 66 61-128 2-70 (264)
325 PRK14176 bifunctional 5,10-met 48.7 24 0.00052 30.6 3.8 34 90-128 189-222 (287)
326 TIGR02109 PQQ_syn_pqqE coenzym 48.5 68 0.0015 27.2 6.5 52 65-116 125-176 (358)
327 COG1393 ArsC Arsenate reductas 48.3 52 0.0011 24.6 5.1 39 72-110 12-51 (117)
328 PRK10927 essential cell divisi 48.0 1.9E+02 0.0041 25.8 9.2 67 57-123 244-319 (319)
329 PRK09389 (R)-citramalate synth 47.8 1.6E+02 0.0035 27.0 9.1 71 61-131 89-174 (488)
330 PRK14571 D-alanyl-alanine synt 47.8 77 0.0017 26.1 6.5 72 60-138 2-82 (299)
331 PRK06200 2,3-dihydroxy-2,3-dih 47.6 98 0.0021 24.3 6.9 39 59-103 6-44 (263)
332 cd04336 YeaK YeaK is an unchar 47.5 36 0.00079 25.3 4.2 44 75-118 2-45 (153)
333 cd03048 GST_N_Ure2p_like GST_N 47.3 43 0.00094 21.9 4.1 31 64-96 4-34 (81)
334 TIGR00237 xseA exodeoxyribonuc 47.1 1.7E+02 0.0036 26.3 9.0 103 21-125 92-199 (432)
335 TIGR02667 moaB_proteo molybden 47.1 1.3E+02 0.0029 23.2 8.6 65 58-123 4-73 (163)
336 PLN02616 tetrahydrofolate dehy 47.1 78 0.0017 28.5 6.8 52 59-110 105-157 (364)
337 PLN02897 tetrahydrofolate dehy 47.1 80 0.0017 28.2 6.8 52 59-110 88-140 (345)
338 PRK14185 bifunctional 5,10-met 47.0 72 0.0016 27.8 6.4 52 59-110 33-85 (293)
339 cd00578 L-fuc_L-ara-isomerases 46.8 94 0.002 27.6 7.3 59 59-119 1-69 (452)
340 KOG1752 Glutaredoxin and relat 46.6 84 0.0018 23.2 5.9 58 61-120 16-75 (104)
341 PF00781 DAGK_cat: Diacylglyce 46.4 53 0.0011 23.8 4.8 58 74-134 17-74 (130)
342 cd05005 SIS_PHI Hexulose-6-pho 46.4 1.3E+02 0.0028 22.9 9.1 67 60-128 35-117 (179)
343 TIGR00048 radical SAM enzyme, 46.3 1.1E+02 0.0023 26.9 7.5 60 61-122 263-331 (355)
344 PRK13656 trans-2-enoyl-CoA red 46.3 1.5E+02 0.0033 27.0 8.6 64 10-87 2-68 (398)
345 PRK06139 short chain dehydroge 46.3 1.2E+02 0.0026 25.7 7.6 27 98-124 67-95 (330)
346 PRK14469 ribosomal RNA large s 46.2 1.4E+02 0.003 25.8 8.1 56 62-119 257-320 (343)
347 PF13727 CoA_binding_3: CoA-bi 46.1 60 0.0013 23.5 5.1 44 75-119 131-174 (175)
348 cd06592 GH31_glucosidase_KIAA1 46.1 74 0.0016 26.9 6.3 54 67-121 25-91 (303)
349 PRK08277 D-mannonate oxidoredu 45.6 1.3E+02 0.0029 23.7 7.4 26 59-86 10-35 (278)
350 PRK05872 short chain dehydroge 45.6 1.6E+02 0.0035 23.9 8.1 26 59-86 9-34 (296)
351 cd06319 PBP1_ABC_sugar_binding 45.5 1.4E+02 0.003 23.1 8.8 60 61-122 2-64 (277)
352 cd03040 GST_N_mPGES2 GST_N fam 45.5 30 0.00065 22.4 3.1 22 72-93 11-32 (77)
353 cd00570 GST_N_family Glutathio 45.4 53 0.0011 19.4 4.0 31 71-101 9-39 (71)
354 TIGR03127 RuMP_HxlB 6-phospho 45.4 1.3E+02 0.0029 22.7 8.7 69 60-129 32-115 (179)
355 cd05009 SIS_GlmS_GlmD_2 SIS (S 45.3 1.1E+02 0.0024 21.9 7.5 61 60-120 14-96 (153)
356 cd04509 PBP1_ABC_transporter_G 45.3 1.4E+02 0.0029 22.8 8.2 51 73-123 22-77 (299)
357 PRK01060 endonuclease IV; Prov 45.1 1.3E+02 0.0027 24.3 7.3 54 60-116 3-63 (281)
358 cd03786 GT1_UDP-GlcNAc_2-Epime 44.8 63 0.0014 26.4 5.5 73 60-134 30-109 (363)
359 PRK07478 short chain dehydroge 44.8 1.4E+02 0.003 23.2 7.3 13 113-125 83-95 (254)
360 COG1635 THI4 Ribulose 1,5-bisp 44.7 43 0.00094 29.0 4.6 44 73-119 81-129 (262)
361 PF00885 DMRL_synthase: 6,7-di 44.6 1.2E+02 0.0026 23.4 6.7 58 59-120 4-69 (144)
362 PRK08265 short chain dehydroge 44.5 1.3E+02 0.0028 23.8 7.2 40 59-104 6-45 (261)
363 PRK10638 glutaredoxin 3; Provi 44.4 94 0.002 20.7 6.2 39 68-108 9-47 (83)
364 cd01311 PDC_hydrolase 2-pyrone 44.2 80 0.0017 25.6 6.0 51 69-124 107-157 (263)
365 PRK13758 anaerobic sulfatase-m 44.0 74 0.0016 27.0 6.0 52 66-117 138-189 (370)
366 cd06386 PBP1_NPR_C_like Ligand 44.0 97 0.0021 26.4 6.7 63 59-124 138-205 (387)
367 PRK07063 short chain dehydroge 43.9 1.5E+02 0.0033 23.1 8.4 42 59-106 7-48 (260)
368 PRK14457 ribosomal RNA large s 43.9 1.5E+02 0.0032 26.1 8.0 62 60-123 259-329 (345)
369 COG1737 RpiR Transcriptional r 43.7 1.4E+02 0.0031 24.8 7.6 58 59-117 131-208 (281)
370 PF13458 Peripla_BP_6: Peripla 43.5 1E+02 0.0022 24.8 6.5 71 59-131 136-207 (343)
371 PRK13394 3-hydroxybutyrate deh 43.5 1.5E+02 0.0033 22.9 7.6 26 59-86 7-32 (262)
372 TIGR02660 nifV_homocitr homoci 43.4 2E+02 0.0043 25.1 8.7 53 71-124 112-165 (365)
373 cd06317 PBP1_ABC_sugar_binding 43.4 1.5E+02 0.0033 22.8 9.2 48 74-123 19-66 (275)
374 PRK05301 pyrroloquinoline quin 43.3 97 0.0021 26.6 6.7 53 65-117 134-186 (378)
375 PRK11557 putative DNA-binding 43.2 1.8E+02 0.0039 23.6 8.5 69 60-129 130-218 (278)
376 PRK01655 spxA transcriptional 43.1 47 0.001 24.8 4.2 41 69-109 8-49 (131)
377 PRK06940 short chain dehydroge 43.0 1.3E+02 0.0028 24.2 7.1 26 99-124 61-87 (275)
378 PRK13361 molybdenum cofactor b 42.9 1.3E+02 0.0028 25.6 7.3 49 69-117 137-187 (329)
379 cd06313 PBP1_ABC_sugar_binding 42.8 1.3E+02 0.0029 23.6 7.0 46 74-121 18-63 (272)
380 cd01840 SGNH_hydrolase_yrhL_li 42.7 1.3E+02 0.0028 22.1 6.6 38 59-96 51-88 (150)
381 cd03033 ArsC_15kD Arsenate Red 42.6 64 0.0014 23.7 4.8 38 70-107 9-47 (113)
382 PRK14181 bifunctional 5,10-met 42.6 34 0.00074 29.6 3.8 52 73-129 165-216 (287)
383 cd03058 GST_N_Tau GST_N family 42.6 59 0.0013 20.9 4.2 28 72-99 10-38 (74)
384 cd03030 GRX_SH3BGR Glutaredoxi 42.5 77 0.0017 22.6 5.1 43 65-109 10-52 (92)
385 PRK14454 ribosomal RNA large s 42.5 1.5E+02 0.0032 26.0 7.7 57 62-120 257-322 (342)
386 TIGR02183 GRXA Glutaredoxin, G 42.3 1.1E+02 0.0023 20.8 5.9 42 65-106 4-48 (86)
387 PRK14455 ribosomal RNA large s 42.2 1.4E+02 0.003 26.2 7.6 60 62-123 268-336 (356)
388 PRK05876 short chain dehydroge 42.2 1.4E+02 0.003 24.2 7.1 12 113-124 83-94 (275)
389 PRK12331 oxaloacetate decarbox 42.1 2.2E+02 0.0047 26.0 9.0 71 60-131 111-184 (448)
390 TIGR00442 hisS histidyl-tRNA s 42.0 86 0.0019 27.0 6.2 60 58-122 322-381 (397)
391 TIGR01617 arsC_related transcr 42.0 89 0.0019 22.5 5.4 36 69-106 7-42 (117)
392 cd06316 PBP1_ABC_sugar_binding 41.8 1.8E+02 0.0038 23.1 8.3 60 60-121 1-64 (294)
393 KOG0725 Reductases with broad 41.7 1.6E+02 0.0034 24.7 7.5 67 59-127 8-103 (270)
394 PRK12559 transcriptional regul 41.6 79 0.0017 23.8 5.2 38 71-108 10-48 (131)
395 cd06371 PBP1_sensory_GC_DEF_li 41.6 2.1E+02 0.0046 24.4 8.4 61 59-120 133-195 (382)
396 PRK13505 formate--tetrahydrofo 41.5 1.1E+02 0.0024 29.1 7.2 57 72-128 359-419 (557)
397 PF03960 ArsC: ArsC family; I 41.2 48 0.001 23.6 3.9 39 72-110 7-46 (110)
398 cd06278 PBP1_LacI_like_2 Ligan 41.2 1.6E+02 0.0035 22.4 8.6 59 61-122 2-63 (266)
399 COG2263 Predicted RNA methylas 41.2 87 0.0019 26.1 5.8 44 66-119 122-166 (198)
400 PRK14041 oxaloacetate decarbox 41.1 2E+02 0.0044 26.5 8.7 70 60-130 110-182 (467)
401 cd01653 GATase1 Type 1 glutami 41.1 84 0.0018 19.6 4.7 38 61-100 1-38 (115)
402 PRK13601 putative L7Ae-like ri 41.1 64 0.0014 22.8 4.4 29 61-89 26-54 (82)
403 PRK08643 acetoin reductase; Va 41.0 1.4E+02 0.0031 23.1 6.8 25 99-123 63-89 (256)
404 cd06597 GH31_transferase_CtsY 40.9 1.2E+02 0.0025 26.3 6.8 25 69-93 21-45 (340)
405 PRK06124 gluconate 5-dehydroge 40.8 1.7E+02 0.0036 22.7 7.2 25 59-85 11-35 (256)
406 cd03110 Fer4_NifH_child This p 40.8 1.5E+02 0.0033 22.1 7.8 58 60-117 118-175 (179)
407 cd06368 PBP1_iGluR_non_NMDA_li 40.8 1.5E+02 0.0033 23.8 7.2 61 59-121 128-188 (324)
408 PRK06455 riboflavin synthase; 40.6 85 0.0019 25.1 5.5 58 60-120 3-63 (155)
409 cd06594 GH31_glucosidase_YihQ 40.6 1.2E+02 0.0026 25.9 6.8 50 70-120 21-91 (317)
410 cd03132 GATase1_catalase Type 40.4 1E+02 0.0022 22.4 5.6 38 60-99 3-40 (142)
411 PRK07074 short chain dehydroge 40.4 1.7E+02 0.0038 22.7 7.4 13 113-125 77-89 (257)
412 PRK14178 bifunctional 5,10-met 40.2 42 0.00091 28.9 3.9 46 73-127 164-209 (279)
413 PF10662 PduV-EutP: Ethanolami 40.2 1.5E+02 0.0033 23.1 6.7 49 58-107 90-142 (143)
414 cd03056 GST_N_4 GST_N family, 40.1 58 0.0012 20.4 3.8 24 72-95 10-33 (73)
415 cd06347 PBP1_ABC_ligand_bindin 40.1 1.9E+02 0.0041 23.1 7.5 65 59-124 136-202 (334)
416 cd06380 PBP1_iGluR_AMPA N-term 40.1 2E+02 0.0044 24.0 8.0 62 59-120 127-190 (382)
417 cd04912 ACT_AKiii-LysC-EC-like 40.1 74 0.0016 21.1 4.4 35 60-94 3-38 (75)
418 TIGR01884 cas_HTH CRISPR locus 40.0 1.9E+02 0.004 22.9 8.3 80 59-138 26-114 (203)
419 PF00128 Alpha-amylase: Alpha 40.0 85 0.0019 24.6 5.4 31 91-121 43-73 (316)
420 PRK07677 short chain dehydroge 39.9 1.7E+02 0.0036 22.8 7.1 26 98-123 61-88 (252)
421 TIGR03470 HpnH hopanoid biosyn 39.6 1.9E+02 0.0042 24.6 7.9 52 66-117 143-195 (318)
422 PF02219 MTHFR: Methylenetetra 39.6 1.7E+02 0.0036 24.5 7.4 54 72-125 57-110 (287)
423 COG2241 CobL Precorrin-6B meth 39.5 51 0.0011 27.3 4.2 44 76-123 105-150 (210)
424 COG0011 Uncharacterized conser 39.5 37 0.00079 25.3 3.0 45 65-111 14-62 (100)
425 PRK05854 short chain dehydroge 39.5 1.2E+02 0.0027 25.0 6.6 41 58-104 13-53 (313)
426 COG0381 WecB UDP-N-acetylgluco 39.3 84 0.0018 28.5 5.8 52 59-110 4-56 (383)
427 PRK08213 gluconate 5-dehydroge 39.3 1.8E+02 0.004 22.6 7.6 39 59-103 12-50 (259)
428 PRK15005 universal stress prot 39.2 1.2E+02 0.0027 21.3 5.8 50 80-134 75-127 (144)
429 PRK07097 gluconate 5-dehydroge 39.0 1.8E+02 0.004 22.8 7.2 26 59-86 10-35 (265)
430 PLN02530 histidine-tRNA ligase 38.8 1.4E+02 0.0031 27.0 7.3 57 59-120 402-458 (487)
431 cd05013 SIS_RpiR RpiR-like pro 38.6 1.3E+02 0.0029 20.7 9.1 67 62-128 16-102 (139)
432 PRK11858 aksA trans-homoaconit 38.4 2E+02 0.0042 25.3 7.9 57 61-117 91-162 (378)
433 TIGR02666 moaA molybdenum cofa 38.4 1.6E+02 0.0036 24.7 7.2 53 64-116 131-185 (334)
434 cd06379 PBP1_iGluR_NMDA_NR1 N- 38.3 2.3E+02 0.0049 23.8 8.0 64 59-122 155-222 (377)
435 COG1609 PurR Transcriptional r 38.1 1.9E+02 0.004 24.6 7.6 100 14-121 20-122 (333)
436 PLN02837 threonine-tRNA ligase 38.0 1.5E+02 0.0033 27.8 7.6 57 59-121 517-573 (614)
437 cd06350 PBP1_GPCR_family_C_lik 37.8 2.2E+02 0.0048 23.1 8.6 64 59-123 161-227 (348)
438 PF04748 Polysacc_deac_2: Dive 37.7 1.5E+02 0.0032 24.2 6.7 49 24-87 71-121 (213)
439 cd06569 GH20_Sm-chitobiase-lik 37.7 1.3E+02 0.0028 27.3 6.8 36 97-133 94-129 (445)
440 PF03618 Kinase-PPPase: Kinase 37.6 1.6E+02 0.0035 25.1 7.0 48 67-114 5-54 (255)
441 PF01910 DUF77: Domain of unkn 37.5 27 0.00059 25.0 2.0 45 65-109 10-56 (92)
442 TIGR00418 thrS threonyl-tRNA s 37.5 1.6E+02 0.0035 26.8 7.5 58 58-120 470-527 (563)
443 TIGR02090 LEU1_arch isopropylm 37.4 1.7E+02 0.0038 25.5 7.4 46 72-117 112-158 (363)
444 TIGR01616 nitro_assoc nitrogen 37.3 38 0.00083 25.5 2.9 38 71-108 11-49 (126)
445 TIGR02764 spore_ybaN_pdaB poly 37.3 1.5E+02 0.0032 22.7 6.3 47 60-106 7-55 (191)
446 PF04412 DUF521: Protein of un 37.1 1.4E+02 0.003 27.1 6.9 82 17-117 266-352 (400)
447 PLN02780 ketoreductase/ oxidor 37.0 2.5E+02 0.0055 23.5 8.1 44 59-108 53-96 (320)
448 PRK07453 protochlorophyllide o 37.0 2.4E+02 0.0051 23.2 8.0 25 59-85 6-30 (322)
449 PLN02696 1-deoxy-D-xylulose-5- 37.0 3E+02 0.0066 25.5 9.1 72 60-134 59-170 (454)
450 PRK08318 dihydropyrimidine deh 36.9 1.5E+02 0.0033 26.0 7.0 52 59-111 101-165 (420)
451 cd03052 GST_N_GDAP1 GST_N fami 36.9 72 0.0016 21.0 4.0 23 72-94 10-32 (73)
452 cd06332 PBP1_aromatic_compound 36.9 1.8E+02 0.004 23.2 7.0 49 72-120 18-72 (333)
453 PF02670 DXP_reductoisom: 1-de 36.9 1.2E+02 0.0027 23.2 5.7 43 64-108 3-45 (129)
454 PRK01966 ddl D-alanyl-alanine 36.7 56 0.0012 27.7 4.2 30 59-88 4-38 (333)
455 PRK14462 ribosomal RNA large s 36.7 2.3E+02 0.005 25.1 8.1 62 60-123 267-337 (356)
456 PRK08177 short chain dehydroge 36.7 1.9E+02 0.0042 22.1 8.3 26 99-124 57-82 (225)
457 PRK15408 autoinducer 2-binding 36.6 2.7E+02 0.0058 23.7 9.2 73 58-132 23-99 (336)
458 TIGR01133 murG undecaprenyldip 36.5 2.2E+02 0.0049 23.0 7.5 30 104-134 81-110 (348)
459 PRK05253 sulfate adenylyltrans 36.5 1.1E+02 0.0024 26.4 5.9 81 61-147 31-115 (301)
460 cd06304 PBP1_BmpA_like Peripla 36.5 2E+02 0.0043 22.5 7.0 59 60-121 1-64 (260)
461 PRK03972 ribosomal biogenesis 36.4 1.6E+02 0.0035 24.6 6.7 58 61-127 107-164 (208)
462 COG0431 Predicted flavoprotein 36.3 2.1E+02 0.0045 22.4 8.1 71 59-131 1-86 (184)
463 cd06568 GH20_SpHex_like A subg 36.3 1.4E+02 0.0031 25.8 6.6 62 71-133 17-107 (329)
464 cd05710 SIS_1 A subgroup of th 36.2 1.6E+02 0.0035 21.1 8.8 66 64-129 4-90 (120)
465 TIGR01108 oadA oxaloacetate de 36.2 2.5E+02 0.0054 26.6 8.6 71 60-131 106-179 (582)
466 PRK06683 hypothetical protein; 36.0 84 0.0018 22.0 4.3 29 61-89 29-57 (82)
467 PRK15414 phosphomannomutase Cp 36.0 2.9E+02 0.0064 24.6 8.8 69 58-128 170-252 (456)
468 cd07945 DRE_TIM_CMS Leptospira 35.7 1.6E+02 0.0034 24.9 6.7 43 76-118 119-165 (280)
469 PRK14463 ribosomal RNA large s 35.6 2.5E+02 0.0054 24.6 8.1 60 62-123 256-324 (349)
470 PF13380 CoA_binding_2: CoA bi 35.6 97 0.0021 22.5 4.8 62 61-122 3-88 (116)
471 PRK15482 transcriptional regul 35.6 2.5E+02 0.0054 23.0 8.8 69 60-129 137-225 (285)
472 cd03055 GST_N_Omega GST_N fami 35.4 1.4E+02 0.0031 20.2 6.6 36 58-95 16-51 (89)
473 cd00002 YbaK_deacylase This CD 35.2 54 0.0012 24.6 3.5 46 76-121 3-51 (152)
474 PLN02378 glutathione S-transfe 35.1 60 0.0013 25.5 3.8 33 72-104 21-53 (213)
475 PF13607 Succ_CoA_lig: Succiny 35.1 1.3E+02 0.0028 23.0 5.5 70 62-136 31-104 (138)
476 PRK08367 porA pyruvate ferredo 35.1 1.5E+02 0.0032 26.5 6.7 46 60-107 264-311 (394)
477 PRK14102 nifW nitrogenase stab 35.0 23 0.00051 26.6 1.4 39 69-107 6-46 (105)
478 cd06563 GH20_chitobiase-like T 35.0 1.5E+02 0.0033 25.6 6.6 35 98-133 84-118 (357)
479 cd03051 GST_N_GTT2_like GST_N 34.9 80 0.0017 19.6 3.8 24 72-95 10-33 (74)
480 PRK07062 short chain dehydroge 34.8 2.2E+02 0.0048 22.2 7.1 26 59-86 8-33 (265)
481 PRK15395 methyl-galactoside AB 34.7 2.7E+02 0.0058 23.1 9.3 73 57-130 23-98 (330)
482 PRK03692 putative UDP-N-acetyl 34.6 2.4E+02 0.0053 23.5 7.6 60 60-123 107-167 (243)
483 cd00758 MoCF_BD MoCF_BD: molyb 34.6 1.8E+02 0.0038 21.4 6.1 46 76-123 23-68 (133)
484 cd01079 NAD_bind_m-THF_DH NAD 34.5 53 0.0012 27.1 3.5 22 102-128 120-142 (197)
485 TIGR02883 spore_cwlD N-acetylm 34.4 1.3E+02 0.0028 23.5 5.7 56 69-124 27-94 (189)
486 cd03789 GT1_LPS_heptosyltransf 34.4 65 0.0014 26.0 4.0 27 98-129 188-214 (279)
487 cd06388 PBP1_iGluR_AMPA_GluR4 34.4 2.5E+02 0.0054 24.2 7.8 59 59-119 125-184 (371)
488 TIGR00322 diphth2_R diphthamid 34.4 1.6E+02 0.0034 25.8 6.6 56 59-121 233-291 (332)
489 PRK05339 PEP synthetase regula 34.3 2.1E+02 0.0046 24.6 7.3 55 63-117 7-63 (269)
490 PRK14167 bifunctional 5,10-met 34.2 54 0.0012 28.5 3.7 35 90-129 186-220 (297)
491 cd01481 vWA_collagen_alpha3-VI 34.2 1.5E+02 0.0033 22.6 5.9 45 60-107 109-154 (165)
492 cd03047 GST_N_2 GST_N family, 34.1 75 0.0016 20.4 3.6 24 73-96 11-34 (73)
493 PRK09701 D-allose transporter 34.0 2.6E+02 0.0056 22.8 8.6 66 59-124 25-93 (311)
494 cd02742 GH20_hexosaminidase Be 34.0 1.7E+02 0.0037 24.7 6.6 63 70-133 14-104 (303)
495 PRK07114 keto-hydroxyglutarate 34.0 2.6E+02 0.0057 23.2 7.6 57 58-120 15-75 (222)
496 PRK13602 putative ribosomal pr 33.9 97 0.0021 21.6 4.4 29 61-89 29-57 (82)
497 PF03808 Glyco_tran_WecB: Glyc 33.9 2.2E+02 0.0048 21.9 7.7 60 59-123 49-111 (172)
498 cd04335 PrdX_deacylase This CD 33.9 89 0.0019 23.5 4.5 45 75-119 2-46 (156)
499 PRK10310 PTS system galactitol 33.8 1.7E+02 0.0037 20.6 6.8 57 60-125 4-62 (94)
500 TIGR02493 PFLA pyruvate format 33.7 1.4E+02 0.0029 23.6 5.7 45 70-114 141-188 (235)
No 1
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=100.00 E-value=4.9e-34 Score=224.81 Aligned_cols=79 Identities=42% Similarity=0.678 Sum_probs=77.8
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCchhhhhhccccCc
Q 032094 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGTCSCCKFSN 138 (147)
Q Consensus 60 ~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLpGvvAg~T~~~ 138 (147)
+|+|||||+|||++|++|+++|++|||+||++|+||||||+++.+|+++++++|++||||+||++||||||+|++|..+
T Consensus 4 ~V~IIMGS~SD~~~mk~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgAAHLPGmvAa~T~lP 82 (162)
T COG0041 4 KVGIIMGSKSDWDTMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGAAHLPGMVAAKTPLP 82 (162)
T ss_pred eEEEEecCcchHHHHHHHHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEecCcchhhcchhhhhcCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999876
No 2
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=99.97 E-value=9.7e-32 Score=243.65 Aligned_cols=123 Identities=37% Similarity=0.572 Sum_probs=112.0
Q ss_pred CCCCccccceecCceeeecCChHHHhhcccccccccCCCcccccCCCCCCCCCCCeEEEEecCCCCHHHHHHHHHHHHHh
Q 032094 5 SKRPNSVRTVSRGTIPVLASSNGSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLDLPVMNDAARTLSDF 84 (147)
Q Consensus 5 ~~r~~~~~qvyrghitVta~~l~~~k~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~SDl~~~~~a~~~L~~f 84 (147)
+.||.+ + .||++++++|.++++++.+.+++.++... +..+...++|+|||||+||+++|++|.++|++|
T Consensus 368 ~~r~~r--k--mGhV~~~g~~~~e~~~~~~~~~~~~~~~~-------~~~~~~~~~v~i~~gs~sd~~~~~~~~~~l~~~ 436 (577)
T PLN02948 368 EMRKQR--K--MGHITVVGPSAAEVEARLDQLLAEESADP-------DALPKGTPLVGIIMGSDSDLPTMKDAAEILDSF 436 (577)
T ss_pred CCCCCC--e--eEEEEEecCCHHHHHHHHHHHHhhhccCC-------CCCCCCCCeEEEEECchhhHHHHHHHHHHHHHc
Confidence 567765 5 89999999999999999999998777653 233445679999999999999999999999999
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCchhhhhhccccCc
Q 032094 85 GVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGTCSCCKFSN 138 (147)
Q Consensus 85 GI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLpGvvAg~T~~~ 138 (147)
||+|+++|+||||+|+++.+|+++++++|++||||+|||+||||||+||+|+.|
T Consensus 437 g~~~~~~v~sahr~~~~~~~~~~~~~~~~~~v~i~~ag~~~~l~~~~a~~t~~p 490 (577)
T PLN02948 437 GVPYEVTIVSAHRTPERMFSYARSAHSRGLQVIIAGAGGAAHLPGMVASMTPLP 490 (577)
T ss_pred CCCeEEEEECCccCHHHHHHHHHHHHHCCCCEEEEEcCccccchHHHhhccCCC
Confidence 999999999999999999999999999999999999999999999999999877
No 3
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=99.97 E-value=1.4e-30 Score=204.92 Aligned_cols=78 Identities=47% Similarity=0.767 Sum_probs=76.4
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCchhhhhhccccCc
Q 032094 61 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGTCSCCKFSN 138 (147)
Q Consensus 61 V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLpGvvAg~T~~~ 138 (147)
|+|||||+||+++|+++.++|++|||+||++|+||||+|+++.+|+++++++|++||||+|||+||||||+||+|..|
T Consensus 1 V~IimGS~SD~~~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lpgvva~~t~~P 78 (156)
T TIGR01162 1 VGIIMGSDSDLPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLPGMVAALTPLP 78 (156)
T ss_pred CEEEECcHhhHHHHHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhHHHHHhccCCC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999999877
No 4
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=99.96 E-value=5.4e-30 Score=200.16 Aligned_cols=80 Identities=35% Similarity=0.627 Sum_probs=71.9
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCchhhhhhccccCc
Q 032094 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGTCSCCKFSN 138 (147)
Q Consensus 59 ~~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLpGvvAg~T~~~ 138 (147)
|+|+|||||+||+++++|+.++|++|||+||++|+||||+|+++.+|+++++++|++|||++||++||||||+||+|..|
T Consensus 1 p~V~Ii~gs~SD~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~a~Lpgvva~~t~~P 80 (150)
T PF00731_consen 1 PKVAIIMGSTSDLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYEARGADVIIAVAGMSAALPGVVASLTTLP 80 (150)
T ss_dssp -EEEEEESSGGGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEEEESS--HHHHHHHHSSS-
T ss_pred CeEEEEeCCHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEECCCcccchhhheeccCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999887
No 5
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=99.63 E-value=1.2e-15 Score=127.40 Aligned_cols=83 Identities=23% Similarity=0.331 Sum_probs=74.9
Q ss_pred CCCCCCCCeEEEEecCCCCHHHHHHHHHHHHHhCCC----eEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCch
Q 032094 52 NGDSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVP----YEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL 127 (147)
Q Consensus 52 ~~~~~~~~~V~IimGS~SDl~~~~~a~~~L~~fGI~----~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhL 127 (147)
+..+...++|+|++.++||+|+++||..+++.+|++ ||++|++.||....+.+... ++.+++|++|||+++|
T Consensus 111 ~~~~~~~g~vgvlsAGTSDlPvAeEa~~tae~lG~ev~~~~DvGVAGiHRLl~~l~r~~~----~~~~~lIVvAGMEGaL 186 (254)
T COG1691 111 NYEPKKGGKVGVLSAGTSDLPVAEEAAVTAEELGVEVQKVYDVGVAGIHRLLSALKRLKI----EDADVLIVVAGMEGAL 186 (254)
T ss_pred CCCcccCceEEEEecCCCCcchHHHHHHHHHHhCceEEEEEeeccchHHhhhhHHHHHHh----hCCCeEEEEcccccch
Confidence 445666789999999999999999999999999998 88999999999998877654 4589999999999999
Q ss_pred hhhhhccccCc
Q 032094 128 SGTCSCCKFSN 138 (147)
Q Consensus 128 pGvvAg~T~~~ 138 (147)
|+++||+++-|
T Consensus 187 PsvvagLvD~P 197 (254)
T COG1691 187 PSVVAGLVDVP 197 (254)
T ss_pred HHHHHhccCCC
Confidence 99999998876
No 6
>KOG2835 consensus Phosphoribosylamidoimidazole-succinocarboxamide synthase [Nucleotide transport and metabolism]
Probab=99.17 E-value=5.7e-12 Score=110.78 Aligned_cols=111 Identities=19% Similarity=-0.005 Sum_probs=98.3
Q ss_pred ecCceeeecCChHHHhhcccccccccCCCcccccCCCCCCCCCCCeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEc
Q 032094 15 SRGTIPVLASSNGSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP 94 (147)
Q Consensus 15 yrghitVta~~l~~~k~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~S 94 (147)
..||++...+++.+...+.+.....++. .-.+.+.+.||+++|.++|..++..++.+++++|..+.+
T Consensus 178 ~~~h~~~I~d~~ie~gv~~~~~~~~~a~-------------~v~~~~~~r~~~~~d~~im~D~~~~~d~~~vt~e~~ilv 244 (373)
T KOG2835|consen 178 WAGHNCAISDMKIEFGVDVTLGEIVLAS-------------DVIDNDSWRMWPDGDGRIMKDKKVYFDLDEVTNEGLILV 244 (373)
T ss_pred hcCCccccccchhhhccchhhhhhhhhh-------------cccchhheEEcccCCcceeeeeeEEeccccCCccceEEE
Confidence 3789999999999999888765433331 122579999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHhhCCceEEEEecCCCCchhhhhhccccCc
Q 032094 95 PHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGTCSCCKFSN 138 (147)
Q Consensus 95 AHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLpGvvAg~T~~~ 138 (147)
+||+|..+.+|+..+..+|++++||+||.++|+|+++++.+..+
T Consensus 245 ~~~~t~~msr~a~~a~~~~~~~~iaga~~~~~~p~~v~a~f~~~ 288 (373)
T KOG2835|consen 245 DENTTPVMSRYATSAKSRGVVLWIAGAYKAGHEPLMVDAEFERP 288 (373)
T ss_pred eecCchhHhhhhhhcccCceEEEEeccCCCCCChhhHHhhcccc
Confidence 99999999999999999999999999999999999999987654
No 7
>KOG2835 consensus Phosphoribosylamidoimidazole-succinocarboxamide synthase [Nucleotide transport and metabolism]
Probab=98.40 E-value=1.5e-07 Score=83.25 Aligned_cols=98 Identities=14% Similarity=-0.022 Sum_probs=85.7
Q ss_pred CCCCCccccceecCceeeecCChHHHhhcccccccccCCCcccccCCCCCCCCCCCeEEEEecCCCCHHHHHHHHHHHHH
Q 032094 4 NSKRPNSVRTVSRGTIPVLASSNGSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLDLPVMNDAARTLSD 83 (147)
Q Consensus 4 ~~~r~~~~~qvyrghitVta~~l~~~k~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~SDl~~~~~a~~~L~~ 83 (147)
+..|.|.++|+|+|+.+||.+.+..+++|+.|++++...+. ++ .+
T Consensus 219 ~d~~im~D~~~~~d~~~vt~e~~ilv~~~~t~~msr~a~~a---------~~--~~------------------------ 263 (373)
T KOG2835|consen 219 GDGRIMKDKKVYFDLDEVTNEGLILVDENTTPVMSRYATSA---------KS--RG------------------------ 263 (373)
T ss_pred CCcceeeeeeEEeccccCCccceEEEeecCchhHhhhhhhc---------cc--Cc------------------------
Confidence 45788999999999999999999999999999998877653 11 11
Q ss_pred hCCCeEEEEEcCCCChHHHHHHHHHHhhCCc-eEEEEecCCCCchhhhhhccccCcce
Q 032094 84 FGVPYEIKILPPHQNCKEALSYALSAKERGI-KIIIVGDGVEAHLSGTCSCCKFSNTC 140 (147)
Q Consensus 84 fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~-~ViIAvAG~aAhLpGvvAg~T~~~~~ 140 (147)
+.+.++|||..+++...+.+..+..|+ .++++++|+++.|+.|.++++.|+-|
T Consensus 264 ----~~~~iaga~~~~~~p~~v~a~f~~~gvp~~~~~~dg~~~~l~~V~~~~~~~~~~ 317 (373)
T KOG2835|consen 264 ----VVLWIAGAYKAGHEPLMVDAEFERPGVPVVFVAVDGRDNLLSIVQMPNGVPVAT 317 (373)
T ss_pred ----eEEEEeccCCCCCChhhHHhhccccCcceeeeecccccccccceeccCCccccc
Confidence 799999999999999999976665566 88999999999999999999999876
No 8
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=95.94 E-value=0.029 Score=45.78 Aligned_cols=86 Identities=19% Similarity=0.196 Sum_probs=67.1
Q ss_pred ceeeecCChHHHhhcccccccccCCCcccccCCCCCCCCCCCeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCC
Q 032094 18 TIPVLASSNGSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQ 97 (147)
Q Consensus 18 hitVta~~l~~~k~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHR 97 (147)
|..+|+.+++.+.+|++++.+.-..+ .-++.+|-|-..|.+.+++.++.++.+++. .+.+...|+
T Consensus 105 ~~~~tG~~~~~il~nl~~l~~~g~~v--------------~iR~~vIPg~nd~~e~i~~ia~~l~~l~~~-~~~llpyh~ 169 (213)
T PRK10076 105 ARDVVKMNLPRVLENLRLLVSEGVNV--------------IPRLPLIPGFTLSRENMQQALDVLIPLGIK-QIHLLPFHQ 169 (213)
T ss_pred HHHHHCCCHHHHHHHHHHHHhCCCcE--------------EEEEEEECCCCCCHHHHHHHHHHHHHcCCc-eEEEecCCc
Confidence 55678889999999999987432222 136788999888889999999999999876 788898887
Q ss_pred ---------------------ChHHHHHHHHHHhhCCceEEE
Q 032094 98 ---------------------NCKEALSYALSAKERGIKIII 118 (147)
Q Consensus 98 ---------------------tp~~l~~~~~~~~~~g~~ViI 118 (147)
+++.+.++.+.+++.|+++.|
T Consensus 170 ~g~~Ky~~lg~~y~~~~~~~~~~~~l~~~~~~~~~~gl~~~i 211 (213)
T PRK10076 170 YGEPKYRLLGKTWSMKEVPAPSSADVATMREMAERAGFQVTV 211 (213)
T ss_pred cchhHHHHcCCcCccCCCCCcCHHHHHHHHHHHHHcCCeEEe
Confidence 345566666777788999987
No 9
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=95.34 E-value=0.084 Score=45.04 Aligned_cols=67 Identities=16% Similarity=0.104 Sum_probs=57.7
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCC
Q 032094 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (147)
Q Consensus 59 ~~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aA 125 (147)
.++.|++|+.+--...++..+.|++.|+.+.+.....+-+.+.+.+.++.++..++++|||+=|++.
T Consensus 23 ~r~livt~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGS~ 89 (351)
T cd08170 23 KRALIIADEFVLDLVGAKIEESLAAAGIDARFEVFGGECTRAEIERLAEIARDNGADVVIGIGGGKT 89 (351)
T ss_pred CeEEEEECHHHHHHHHHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHhhcCCCEEEEecCchh
Confidence 3788999876666889999999999999877666778888899999998888889999999999975
No 10
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=95.11 E-value=0.094 Score=44.87 Aligned_cols=73 Identities=11% Similarity=0.063 Sum_probs=58.0
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCc-hhhhhh
Q 032094 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGTCS 132 (147)
Q Consensus 60 ~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAh-LpGvvA 132 (147)
++.||+|..+-....++..+.|++.|+.+++.+.+-.-+.+.+.+.++.+++.++++|||+=|++.. ++..+|
T Consensus 24 ~~liv~~~~~~~~~~~~v~~~l~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGs~~D~aK~ia 97 (349)
T cd08550 24 KVAVVGGKTVLKKSRPRFEAALAKSIIVVDVIVFGGECSTEEVVKALCGAEEQEADVIIGVGGGKTLDTAKAVA 97 (349)
T ss_pred eEEEEEChHHHHHHHHHHHHHHHhcCCeeEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHH
Confidence 6888888766557788999999999998777777777788899999988888889999999997643 333443
No 11
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=94.58 E-value=0.18 Score=43.61 Aligned_cols=68 Identities=15% Similarity=0.169 Sum_probs=56.4
Q ss_pred CeEEEEecCCC--CHHHHHHHHHHHHHhCCCeEE-EEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCc
Q 032094 59 PIVGIIMESDL--DLPVMNDAARTLSDFGVPYEI-KILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH 126 (147)
Q Consensus 59 ~~V~IimGS~S--Dl~~~~~a~~~L~~fGI~~ev-~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAh 126 (147)
.+|.||+|..+ .....+++.+.|++.|+++.+ .-+..+-+.+.+.+.++.++..++++|||+=|+|..
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiavGGGS~i 96 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREEGCDFVVGLGGGSSM 96 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHcCCCEEEEeCCccHH
Confidence 37999999876 667889999999999998763 234578888889999888888899999999998753
No 12
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=94.53 E-value=0.26 Score=42.40 Aligned_cols=120 Identities=17% Similarity=0.172 Sum_probs=74.6
Q ss_pred CCCccccceecCceeeecCChHHHhhcccccccccCCCcccccCCCCCCCCCCCeEEEEecCCC-----CHH----HHHH
Q 032094 6 KRPNSVRTVSRGTIPVLASSNGSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDL-----DLP----VMND 76 (147)
Q Consensus 6 ~r~~~~~qvyrghitVta~~l~~~k~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~S-----Dl~----~~~~ 76 (147)
.+||++.+. =-.-.|+++.+++..+++..-+ .....++|+|+.|++| |.. .+++
T Consensus 111 ~~~Nvl~t~-ga~~~i~~~~l~~a~~~~~~~~----------------~~l~~p~~avLIGG~s~~~~~~~~~~~~l~~~ 173 (311)
T PF06258_consen 111 RGPNVLPTL-GAPNRITPERLAEAAAAWAPRL----------------AALPRPRVAVLIGGDSKHYRWDEEDAERLLDQ 173 (311)
T ss_pred CCCceEecc-cCCCcCCHHHHHHHHHhhhhhh----------------ccCCCCeEEEEECcCCCCcccCHHHHHHHHHH
Confidence 466665542 1233455555666665554322 1223479999999988 333 4556
Q ss_pred HHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceE-EEEecCCCCchhhhhhcc-ccCcceeeccc
Q 032094 77 AARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKI-IIVGDGVEAHLSGTCSCC-KFSNTCYSCSF 145 (147)
Q Consensus 77 a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~V-iIAvAG~aAhLpGvvAg~-T~~~~~~~~~~ 145 (147)
....++..| ..+.|+.-.|||+++.+.++..-+....+ |.-..| .|=..|++|.- -.=+|+-|-|.
T Consensus 174 l~~~~~~~~--~~~~vttSRRTp~~~~~~L~~~~~~~~~~~~~~~~~-~nPy~~~La~ad~i~VT~DSvSM 241 (311)
T PF06258_consen 174 LAALAAAYG--GSLLVTTSRRTPPEAEAALRELLKDNPGVYIWDGTG-ENPYLGFLAAADAIVVTEDSVSM 241 (311)
T ss_pred HHHHHHhCC--CeEEEEcCCCCcHHHHHHHHHhhcCCCceEEecCCC-CCcHHHHHHhCCEEEEcCccHHH
Confidence 666667777 57999999999999999986665333455 445555 66677888643 22226555543
No 13
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=93.89 E-value=0.27 Score=42.59 Aligned_cols=66 Identities=11% Similarity=0.041 Sum_probs=52.4
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCc
Q 032094 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH 126 (147)
Q Consensus 59 ~~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAh 126 (147)
.+|.|++|..+= ..++....|++.|+.+.+--....-+.+.+.+.++.++..++++|||+=|++..
T Consensus 23 ~r~livtd~~~~--~~~~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~~ 88 (374)
T cd08183 23 RRVLLVTGASSL--RAAWLIEALRAAGIEVTHVVVAGEPSVELVDAAVAEARNAGCDVVIAIGGGSVI 88 (374)
T ss_pred CcEEEEECCchH--HHHHHHHHHHHcCCeEEEecCCCCcCHHHHHHHHHHHHhcCCCEEEEecCchHH
Confidence 378999987553 888899999999998765433456666778888888888899999999999754
No 14
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=93.89 E-value=0.26 Score=42.25 Aligned_cols=74 Identities=15% Similarity=0.157 Sum_probs=57.7
Q ss_pred CeEEEEecCCCCH-HHHHHHHHHHHHhCCCeEEE-EEcCCCChHHHHHHHHHHhhCCceEEEEecCCCC-chhhhhh
Q 032094 59 PIVGIIMESDLDL-PVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA-HLSGTCS 132 (147)
Q Consensus 59 ~~V~IimGS~SDl-~~~~~a~~~L~~fGI~~ev~-V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aA-hLpGvvA 132 (147)
.+|.|++|..+-. ...++..+.|++.|+.+.+- -...|-+.+.+.+.++.++..++++|||+=|++. -++..+|
T Consensus 24 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IiaiGGGs~~D~AK~va 100 (370)
T cd08551 24 RKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREEGCDGVIAVGGGSVLDTAKAIA 100 (370)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHH
Confidence 3789999887655 77888999999988876532 3557899999999999888889999999988754 2343444
No 15
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=93.67 E-value=0.26 Score=42.15 Aligned_cols=67 Identities=10% Similarity=0.037 Sum_probs=54.5
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeE-EEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCC
Q 032094 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYE-IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (147)
Q Consensus 59 ~~V~IimGS~SDl~~~~~a~~~L~~fGI~~e-v~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aA 125 (147)
.+|.||+|..+-....+++.+.|++-|+.+. +.....+-+-+.+.+.++.++..++++|||+=|++.
T Consensus 23 ~r~liv~d~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~iiavGGGs~ 90 (345)
T cd08171 23 KKVVVIGGKTALAAAKDKIKAALEQSGIEITDFIWYGGESTYENVERLKKNPAVQEADMIFAVGGGKA 90 (345)
T ss_pred CEEEEEeCHHHHHHHHHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHhhcCCCEEEEeCCcHH
Confidence 3799999987766778888999999999875 334567778888888888888888999999999864
No 16
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=93.67 E-value=0.47 Score=40.61 Aligned_cols=75 Identities=16% Similarity=0.242 Sum_probs=60.7
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcC---CCChHHHHHHHHHHhhCCc---eEEEEecCCC-Cchhhhh
Q 032094 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPP---HQNCKEALSYALSAKERGI---KIIIVGDGVE-AHLSGTC 131 (147)
Q Consensus 59 ~~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SA---HRtp~~l~~~~~~~~~~g~---~ViIAvAG~a-AhLpGvv 131 (147)
.++.|+++....-.+.++..+.|+..|+++.+-+... +.+.+.+.+..+.+.+.++ ++|||+-|++ .-+++++
T Consensus 25 ~~~livtd~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ak~v 104 (345)
T cd08195 25 SKILIVTDENVAPLYLEKLKAALEAAGFEVEVIVIPAGEASKSLETLEKLYDALLEAGLDRKSLIIALGGGVVGDLAGFV 104 (345)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHhcCCceEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCCCCeEEEECChHHHhHHHHH
Confidence 3689999887766789999999999999888766654 8888999999988877777 8999998884 4466677
Q ss_pred hc
Q 032094 132 SC 133 (147)
Q Consensus 132 Ag 133 (147)
|+
T Consensus 105 A~ 106 (345)
T cd08195 105 AA 106 (345)
T ss_pred HH
Confidence 64
No 17
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=93.62 E-value=0.37 Score=41.61 Aligned_cols=73 Identities=14% Similarity=0.086 Sum_probs=57.0
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCc-hhhhhh
Q 032094 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGTCS 132 (147)
Q Consensus 60 ~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAh-LpGvvA 132 (147)
++.||+|..+--...++..+.|+..|+.+.+.....+-+-+.+.++++.+...++++|||+-|++.. ++..+|
T Consensus 31 ~~livtd~~~~~~~~~~v~~~l~~~~~~~~~~~~~~ep~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA 104 (366)
T PRK09423 31 RALVIADEFVLGIVGDRVEASLKEAGLTVVFEVFNGECSDNEIDRLVAIAEENGCDVVIGIGGGKTLDTAKAVA 104 (366)
T ss_pred EEEEEEChhHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecChHHHHHHHHHH
Confidence 6888888765555888889999999998765556778888888888888888889999999998643 444444
No 18
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=93.27 E-value=0.39 Score=40.98 Aligned_cols=65 Identities=14% Similarity=0.075 Sum_probs=50.1
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCC---CChHHHHHHHHHHhhCCceEEEEecCCCC
Q 032094 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPH---QNCKEALSYALSAKERGIKIIIVGDGVEA 125 (147)
Q Consensus 60 ~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAH---Rtp~~l~~~~~~~~~~g~~ViIAvAG~aA 125 (147)
++.||+|..+--...++..+.|++.|+++.+.+.... .+.+.+.+.++.+.. +.++|||+-|++.
T Consensus 25 ~~livtd~~~~~~~~~~v~~~l~~~~i~~~~~~~~~~~~~pt~~~v~~~~~~~~~-~~d~IIaIGGGs~ 92 (348)
T cd08175 25 KALIVADENTYAAAGKKVEALLKRAGVVVLLIVLPAGDLIADEKAVGRVLKELER-DTDLIIAVGSGTI 92 (348)
T ss_pred cEEEEECCcHHHHHHHHHHHHHHHCCCeeEEeecCCCcccCCHHHHHHHHHHhhc-cCCEEEEECCcHH
Confidence 6888888655443478899999999998776544333 788888888877766 7899999999864
No 19
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=93.20 E-value=0.61 Score=39.78 Aligned_cols=75 Identities=16% Similarity=0.135 Sum_probs=57.0
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcC---CCChHHHHHHHHHHhhCCc---eEEEEecCCCCc-hhhhh
Q 032094 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPP---HQNCKEALSYALSAKERGI---KIIIVGDGVEAH-LSGTC 131 (147)
Q Consensus 59 ~~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SA---HRtp~~l~~~~~~~~~~g~---~ViIAvAG~aAh-LpGvv 131 (147)
.+|.|++|...-....+++.+.|++.|+++.+.+... +.+.+.+.+.++.+...++ +++||+-|++.. +++.+
T Consensus 21 ~~~livtd~~~~~~~~~~v~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~i 100 (344)
T TIGR01357 21 SKLVIITDETVADLYADKLLEALQALGYNVLKLTVPDGEESKSLETVQRLYDQLLEAGLDRSSTIIALGGGVVGDLAGFV 100 (344)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHhcCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcChHHHHHHHHH
Confidence 4788998876655688889999999999887655543 5566888888877776665 899999998654 66666
Q ss_pred hc
Q 032094 132 SC 133 (147)
Q Consensus 132 Ag 133 (147)
|+
T Consensus 101 A~ 102 (344)
T TIGR01357 101 AA 102 (344)
T ss_pred HH
Confidence 63
No 20
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=93.20 E-value=0.55 Score=40.43 Aligned_cols=72 Identities=14% Similarity=0.087 Sum_probs=58.8
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCc-hhhhhhc
Q 032094 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGTCSC 133 (147)
Q Consensus 60 ~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAh-LpGvvAg 133 (147)
++.||++..+-....++..+.|++.| .+.+. ...+.+.+.+.++++.+...+.++|||+-|++.. +++.+|-
T Consensus 36 ~~livtd~~~~~~~~~~l~~~l~~~~-~~~~~-~~~~~t~~~v~~~~~~~~~~~~d~IIaiGGGsv~D~ak~vA~ 108 (350)
T PRK00843 36 RALIVTGPTTKKIAGDRVEENLEDAG-DVEVV-IVDEATMEEVEKVEEKAKDVNAGFLIGVGGGKVIDVAKLAAY 108 (350)
T ss_pred eEEEEECCcHHHHHHHHHHHHHHhcC-CeeEE-eCCCCCHHHHHHHHHHhhccCCCEEEEeCCchHHHHHHHHHH
Confidence 69999998887667788888899888 77654 4579999999999988888889999999997544 6666664
No 21
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=93.04 E-value=0.66 Score=32.33 Aligned_cols=58 Identities=9% Similarity=0.030 Sum_probs=38.2
Q ss_pred eEEEEecCCCCH---HHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCC-ceEEEE
Q 032094 60 IVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERG-IKIIIV 119 (147)
Q Consensus 60 ~V~IimGS~SDl---~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g-~~ViIA 119 (147)
.|.|+|-|++|. |.|.++.+.|+++||+|+..=+..+ ++...++.+....+. +.|||-
T Consensus 9 ~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~--~~~~~~l~~~~g~~tvP~vfi~ 70 (90)
T cd03028 9 PVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILED--EEVRQGLKEYSNWPTFPQLYVN 70 (90)
T ss_pred CEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCC--HHHHHHHHHHhCCCCCCEEEEC
Confidence 588888877655 4777999999999999986665544 544444444322222 366663
No 22
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=92.97 E-value=0.39 Score=41.78 Aligned_cols=67 Identities=15% Similarity=0.197 Sum_probs=52.9
Q ss_pred eEEEEecCCC--CHHHHHHHHHHHHHhCCCeEEEE-EcCCCChHHHHHHHHHHhhCCceEEEEecCCCCc
Q 032094 60 IVGIIMESDL--DLPVMNDAARTLSDFGVPYEIKI-LPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH 126 (147)
Q Consensus 60 ~V~IimGS~S--Dl~~~~~a~~~L~~fGI~~ev~V-~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAh 126 (147)
++.|++|..+ .....++..+.|++.|+.+.+-- ..++-+.+.+.+.++.++..++++|||+-|++..
T Consensus 28 r~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~i 97 (383)
T cd08186 28 KVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGREFGAQAVIAIGGGSPI 97 (383)
T ss_pred EEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCccHH
Confidence 7889998654 25567899999999999765432 3467788999999988888899999999998653
No 23
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=92.83 E-value=0.34 Score=41.96 Aligned_cols=66 Identities=20% Similarity=0.212 Sum_probs=53.5
Q ss_pred eEEEEecCCCCH-HHHHHHHHHHHHhCCCeEEE-EEcCCCChHHHHHHHHHHhhCCceEEEEecCCCC
Q 032094 60 IVGIIMESDLDL-PVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (147)
Q Consensus 60 ~V~IimGS~SDl-~~~~~a~~~L~~fGI~~ev~-V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aA 125 (147)
++.|++|..... ...+++.+.|+..|+.+.+- =+.+|-+-+.+++.++.++..++++|||+-|++.
T Consensus 30 ~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGS~ 97 (377)
T cd08176 30 KALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKKEGCDFIISIGGGSP 97 (377)
T ss_pred eEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCcHH
Confidence 688888866544 67889999999999976533 1345888899999998888889999999999876
No 24
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=92.80 E-value=0.47 Score=40.79 Aligned_cols=71 Identities=10% Similarity=0.099 Sum_probs=54.2
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhCCCeEE-EEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCc-hhhhhh
Q 032094 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEI-KILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGTCS 132 (147)
Q Consensus 60 ~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev-~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAh-LpGvvA 132 (147)
++.||+|+.+- ..++..+.|++.|+.+.+ .-...|-+.+.+.+.++.++..++++|||+=|++.. ++.++|
T Consensus 25 ~~livtd~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs~~D~aK~ia 97 (367)
T cd08182 25 RVLLVTGPRSA--IASGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLLREFGPDAVLAVGGGSVLDTAKALA 97 (367)
T ss_pred eEEEEeCchHH--HHHHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCCcHHHHHHHHHH
Confidence 78899887664 667788899999986543 234578888999999988888899999999998643 333444
No 25
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=92.70 E-value=0.46 Score=41.13 Aligned_cols=67 Identities=18% Similarity=0.117 Sum_probs=54.6
Q ss_pred eEEEEecCCCC-HHHHHHHHHHHHHhCCCeEEE-EEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCc
Q 032094 60 IVGIIMESDLD-LPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH 126 (147)
Q Consensus 60 ~V~IimGS~SD-l~~~~~a~~~L~~fGI~~ev~-V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAh 126 (147)
+|.||+|..+- ....+++.+.|++.|+.+.+- -...|-+.+.+.+.++.++..++++|||+=|++..
T Consensus 25 r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~~ 93 (375)
T cd08194 25 RPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEGGCDVIIALGGGSPI 93 (375)
T ss_pred eEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHH
Confidence 68899987554 347889999999999987632 35678888999999998888899999999998653
No 26
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=92.46 E-value=0.92 Score=32.36 Aligned_cols=59 Identities=12% Similarity=0.088 Sum_probs=38.6
Q ss_pred CeEEEEecCCCCH---HHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCC-ceEEEE
Q 032094 59 PIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERG-IKIIIV 119 (147)
Q Consensus 59 ~~V~IimGS~SDl---~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g-~~ViIA 119 (147)
..|.|+|-|++|+ |.|.++.+.|+++||+|+..=+ ...++...++.+....+. +.|||.
T Consensus 12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di--~~~~~~~~~l~~~tg~~tvP~vfi~ 74 (97)
T TIGR00365 12 NPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNV--LEDPEIRQGIKEYSNWPTIPQLYVK 74 (97)
T ss_pred CCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEEC--CCCHHHHHHHHHHhCCCCCCEEEEC
Confidence 3699999887555 6778999999999999884333 344554444443322222 367765
No 27
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=92.29 E-value=0.47 Score=41.46 Aligned_cols=68 Identities=15% Similarity=0.043 Sum_probs=53.1
Q ss_pred CeEEEEecCC-CCHHHHHHHHHHHHHhCCCeEEE-EEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCc
Q 032094 59 PIVGIIMESD-LDLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH 126 (147)
Q Consensus 59 ~~V~IimGS~-SDl~~~~~a~~~L~~fGI~~ev~-V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAh 126 (147)
.+|.||+|.. .+....+++.+.|++.|+.+.+- -...+-+.+.+.+.++.+...++++|||+-|++..
T Consensus 22 ~k~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~i 91 (398)
T cd08178 22 KRAFIVTDRFMVKLGYVDKVIDVLKRRGVETEVFSDVEPDPSLETVRKGLELMNSFKPDTIIALGGGSPM 91 (398)
T ss_pred CeEEEEcChhHHhCccHHHHHHHHHHCCCeEEEecCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccHH
Confidence 3688888754 34458889999999999876532 24468888899999988888899999999998753
No 28
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=92.20 E-value=1 Score=38.78 Aligned_cols=74 Identities=16% Similarity=0.222 Sum_probs=57.6
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEc---CCCChHHHHHHHHHHhhCCc---eEEEEecCCCC-chhhhh
Q 032094 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP---PHQNCKEALSYALSAKERGI---KIIIVGDGVEA-HLSGTC 131 (147)
Q Consensus 59 ~~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~S---AHRtp~~l~~~~~~~~~~g~---~ViIAvAG~aA-hLpGvv 131 (147)
.++.|+++....-...+++.+.|+..|+.+.+.+.+ ++.+.+.+.+.++.+...++ +++||+-|++. -+++.+
T Consensus 32 ~~~livtd~~~~~~~~~~v~~~L~~~gi~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~i 111 (358)
T PRK00002 32 KKVAIVTDETVAPLYLEKLRASLEAAGFEVDVVVLPDGEQYKSLETLEKIYDALLEAGLDRSDTLIALGGGVIGDLAGFA 111 (358)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcCcHHHHHHHHH
Confidence 368999988776678899999999999988865544 46777888888877777666 99999988753 355566
Q ss_pred h
Q 032094 132 S 132 (147)
Q Consensus 132 A 132 (147)
|
T Consensus 112 A 112 (358)
T PRK00002 112 A 112 (358)
T ss_pred H
Confidence 5
No 29
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=92.12 E-value=0.49 Score=41.07 Aligned_cols=67 Identities=18% Similarity=0.240 Sum_probs=53.2
Q ss_pred eEEEEecCCCC-HHHHHHHHHHHHHhCCCeEEE-EEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCc
Q 032094 60 IVGIIMESDLD-LPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH 126 (147)
Q Consensus 60 ~V~IimGS~SD-l~~~~~a~~~L~~fGI~~ev~-V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAh 126 (147)
+|.|++|.... ....++..+.|++.|+++.+- -..++-+.+.+.+.++.++..++++|||+-|++..
T Consensus 31 r~lvvt~~~~~~~g~~~~v~~~L~~~~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiaiGGGSvi 99 (379)
T TIGR02638 31 KALVVTDKDLIKFGVADKVTDLLDEAGIAYELFDEVKPNPTITVVKAGVAAFKASGADYLIAIGGGSPI 99 (379)
T ss_pred EEEEEcCcchhhccchHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCChHHH
Confidence 78888886533 337888999999999976543 23468888999999988888899999999998754
No 30
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=92.06 E-value=0.37 Score=41.27 Aligned_cols=65 Identities=15% Similarity=0.169 Sum_probs=54.4
Q ss_pred eEEEEecCCCCHH--HHHHHHHHHHHhCCCeEEEE-EcCCCChHHHHHHHHHHhhCCceEEEEecCCCC
Q 032094 60 IVGIIMESDLDLP--VMNDAARTLSDFGVPYEIKI-LPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (147)
Q Consensus 60 ~V~IimGS~SDl~--~~~~a~~~L~~fGI~~ev~V-~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aA 125 (147)
+|.||+|. +-.. .+++..+.|++-|+++.+-- ...|=+.+.+.+.++.+++.++++|||+=|++.
T Consensus 23 r~lvVt~~-~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~ 90 (366)
T PF00465_consen 23 RVLVVTDP-SLSKSGLVDRVLDALEEAGIEVQVFDGVGPNPTLEDVDEAAEQARKFGADCIIAIGGGSV 90 (366)
T ss_dssp EEEEEEEH-HHHHHTHHHHHHHHHHHTTCEEEEEEEESSS-BHHHHHHHHHHHHHTTSSEEEEEESHHH
T ss_pred CEEEEECc-hHHhCccHHHHHHHHhhCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCc
Confidence 89999988 4333 68999999999999986444 689999999999999999999999999999864
No 31
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=91.99 E-value=0.54 Score=40.82 Aligned_cols=68 Identities=12% Similarity=0.060 Sum_probs=52.9
Q ss_pred CeEEEEecCCCC--HHHHHHHHHHHHHhCCCeEE-EEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCc
Q 032094 59 PIVGIIMESDLD--LPVMNDAARTLSDFGVPYEI-KILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH 126 (147)
Q Consensus 59 ~~V~IimGS~SD--l~~~~~a~~~L~~fGI~~ev-~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAh 126 (147)
.++.||+|..+- ....++..+.|++.|+.+.+ .-..+|-+.+.+.+.++.++..++++|||+-|++..
T Consensus 29 ~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~i 99 (382)
T cd08187 29 KKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKEEKVDFILAVGGGSVI 99 (382)
T ss_pred CEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCChHHH
Confidence 378999886554 35678899999999987543 224467778889998888888899999999998754
No 32
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=91.99 E-value=1.1 Score=39.04 Aligned_cols=75 Identities=16% Similarity=0.209 Sum_probs=58.4
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEc---CCCChHHHHHHHHHHhhCCce---EEEEecCCC-Cchhhhh
Q 032094 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP---PHQNCKEALSYALSAKERGIK---IIIVGDGVE-AHLSGTC 131 (147)
Q Consensus 59 ~~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~S---AHRtp~~l~~~~~~~~~~g~~---ViIAvAG~a-AhLpGvv 131 (147)
.+|.|++++.-.....++..+.|++.|+++++.+.. .+.+.+.+.+..+.+.+.+++ +|||+-|++ .-+++.+
T Consensus 24 ~rvlvVtd~~v~~~~~~~l~~~L~~~g~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~dr~~~IIAvGGGsv~D~ak~~ 103 (355)
T cd08197 24 DKYLLVTDSNVEDLYGHRLLEYLREAGAPVELLSVPSGEEHKTLSTLSDLVERALALGATRRSVIVALGGGVVGNIAGLL 103 (355)
T ss_pred CeEEEEECccHHHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHHH
Confidence 368889887654447788999999999988776654 477888899988888888887 999998875 4466666
Q ss_pred hc
Q 032094 132 SC 133 (147)
Q Consensus 132 Ag 133 (147)
|+
T Consensus 104 A~ 105 (355)
T cd08197 104 AA 105 (355)
T ss_pred HH
Confidence 64
No 33
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=91.85 E-value=0.63 Score=40.08 Aligned_cols=68 Identities=16% Similarity=0.182 Sum_probs=54.2
Q ss_pred CeEEEEecCCC-C-HHHHHHHHHHHHHhCCCeEEE-EEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCc
Q 032094 59 PIVGIIMESDL-D-LPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH 126 (147)
Q Consensus 59 ~~V~IimGS~S-D-l~~~~~a~~~L~~fGI~~ev~-V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAh 126 (147)
.++.|++|..+ . ....++..+.|++.|+.+.+- -+..+-+-+.+.+.++.+++.++++|||+-|++..
T Consensus 26 ~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGSvi 96 (357)
T cd08181 26 KRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKKFNADFVIGIGGGSPL 96 (357)
T ss_pred CEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHH
Confidence 37899998765 3 346788899999999976542 24468888889999988888899999999999864
No 34
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=91.77 E-value=0.57 Score=34.71 Aligned_cols=53 Identities=17% Similarity=0.301 Sum_probs=41.4
Q ss_pred CeEEEEecCCCC-HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhh
Q 032094 59 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE 111 (147)
Q Consensus 59 ~~V~IimGS~SD-l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~ 111 (147)
.++.|..|.+.+ .-+.+-..+.++++||.+++...+..-+.+++.+.++...+
T Consensus 31 ~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~ 84 (117)
T PF00763_consen 31 KLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKLNE 84 (117)
T ss_dssp EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH
T ss_pred EEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 477888886655 55778888999999999999999999999999999976643
No 35
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=91.72 E-value=1.1 Score=38.13 Aligned_cols=71 Identities=15% Similarity=0.162 Sum_probs=55.1
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCC-chhhhhh
Q 032094 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA-HLSGTCS 132 (147)
Q Consensus 60 ~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aA-hLpGvvA 132 (147)
+|.|++|...-....++....|++.| .+.+.+. .+=+.+.+.+..+.+.+.+.++|||+-|++. -+++.+|
T Consensus 27 ~~liv~d~~~~~~~~~~v~~~l~~~~-~~~~~~~-~~~~~~~v~~~~~~~~~~~~d~iIaiGGGs~~D~aK~~a 98 (339)
T cd08173 27 RVLVVTGPTTKSIAGKKVEALLEDEG-EVDVVIV-EDATYEEVEKVESSARDIGADFVIGVGGGRVIDVAKVAA 98 (339)
T ss_pred eEEEEECCchHHHHHHHHHHHHHhcC-CeEEEEe-CCCCHHHHHHHHHHhhhcCCCEEEEeCCchHHHHHHHHH
Confidence 68888888776678889999999999 7766543 5557888888888888888999999999754 3444444
No 36
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=91.52 E-value=0.74 Score=39.64 Aligned_cols=66 Identities=18% Similarity=0.174 Sum_probs=52.4
Q ss_pred eEEEEecCCC-CHHHHHHHHHHHHHhCCCeEEE-EEcCCCChHHHHHHHHHHhhCCceEEEEecCCCC
Q 032094 60 IVGIIMESDL-DLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (147)
Q Consensus 60 ~V~IimGS~S-Dl~~~~~a~~~L~~fGI~~ev~-V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aA 125 (147)
++.|++|... +....++..+.|++-|+++.+- -...|-+-+.+.+.++.++..++++|||+=|++.
T Consensus 26 ~~liv~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGSv 93 (370)
T cd08192 26 RPLIVTDPGLAALGLVARVLALLEDAGLAAALFDEVPPNPTEAAVEAGLAAYRAGGCDGVIAFGGGSA 93 (370)
T ss_pred eEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchH
Confidence 6888887543 3457899999999999986532 2457888888999998888889999999999865
No 37
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=91.26 E-value=1.1 Score=36.76 Aligned_cols=42 Identities=10% Similarity=0.114 Sum_probs=28.9
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHh-CCCeEEEEEcCCCChHH
Q 032094 60 IVGIIMESDLDLPVMNDAARTLSDF-GVPYEIKILPPHQNCKE 101 (147)
Q Consensus 60 ~V~IimGS~SDl~~~~~a~~~L~~f-GI~~ev~V~SAHRtp~~ 101 (147)
+|++++|..+|.-.+....+.|++. ++++.+-+++-|+.+..
T Consensus 1 ~i~~~~gtr~~~~~~~pl~~~l~~~~~~~~~~~~tg~h~~~~~ 43 (363)
T cd03786 1 KILVVTGTRPEYIKLAPLIRALKKDPGFELVLVVTGQHYDMEM 43 (363)
T ss_pred CEEEEEecCHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCChhh
Confidence 3677777777777777777777765 66666667776766553
No 38
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=91.20 E-value=0.85 Score=39.59 Aligned_cols=66 Identities=18% Similarity=0.255 Sum_probs=50.0
Q ss_pred eEEEEecCCC-CHHHHHHHHHHHHHhCCCeEEEE-EcCCCChHHHHHHHHHHhhCCceEEEEecCCCC
Q 032094 60 IVGIIMESDL-DLPVMNDAARTLSDFGVPYEIKI-LPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (147)
Q Consensus 60 ~V~IimGS~S-Dl~~~~~a~~~L~~fGI~~ev~V-~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aA 125 (147)
+|.|++|... +....++..+.|++.|+++.+-- ..++-+.+.+.+.++.+...++++|||+-|++.
T Consensus 30 ~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGsv 97 (377)
T cd08188 30 KVLLVSDPGVIKAGWVDRVIESLEEAGLEYVVFSDVSPNPRDEEVMAGAELYLENGCDVIIAVGGGSP 97 (377)
T ss_pred eEEEEeCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchH
Confidence 7888988643 23467889999999999765421 234666777888888888888999999999864
No 39
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=91.18 E-value=0.86 Score=39.45 Aligned_cols=67 Identities=19% Similarity=0.279 Sum_probs=52.1
Q ss_pred eEEEEecCCCC-HHHHHHHHHHHHHhCCCeEEE-EEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCc
Q 032094 60 IVGIIMESDLD-LPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH 126 (147)
Q Consensus 60 ~V~IimGS~SD-l~~~~~a~~~L~~fGI~~ev~-V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAh 126 (147)
+|.|++|.... ....++..+.|++.|+.+.+- -+-.|-+.+.+.+.++.+...++++|||+-|++..
T Consensus 28 ~~lvvt~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGS~~ 96 (374)
T cd08189 28 KVLIVTDKGLVKLGLLDKVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALYRENGCDAILAVGGGSVI 96 (374)
T ss_pred eEEEEeCcchhhcccHHHHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccHH
Confidence 78899886543 336788999999999976532 23467888889999988888899999999998753
No 40
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=91.14 E-value=0.85 Score=39.48 Aligned_cols=66 Identities=17% Similarity=0.153 Sum_probs=53.1
Q ss_pred eEEEEecCCC--CHHHHHHHHHHHHHhCCCeEEE-EEcCCCChHHHHHHHHHHhhCCceEEEEecCCCC
Q 032094 60 IVGIIMESDL--DLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (147)
Q Consensus 60 ~V~IimGS~S--Dl~~~~~a~~~L~~fGI~~ev~-V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aA 125 (147)
++.||+|..+ .....++..+.|++.|+++.+- =...|-+.+.+.+.++.++..++++|||+=|+|.
T Consensus 25 r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGSv 93 (375)
T cd08179 25 KAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMREFEPDWIIALGGGSP 93 (375)
T ss_pred eEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccH
Confidence 6889988654 3467789999999999976532 1346888899999998888889999999999875
No 41
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=90.98 E-value=0.8 Score=39.81 Aligned_cols=66 Identities=18% Similarity=0.197 Sum_probs=51.4
Q ss_pred eEEEEecCC-CCHHHHHHHHHHHHHhCCCeEEE-EEcCCCChHHHHHHHHHHhhCCceEEEEecCCCC
Q 032094 60 IVGIIMESD-LDLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (147)
Q Consensus 60 ~V~IimGS~-SDl~~~~~a~~~L~~fGI~~ev~-V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aA 125 (147)
+|.|++|.. .+.+..+++.+.|++.|+.+.+- =.-.+-+.+.+.+.++.+...++++|||+=|++.
T Consensus 32 ~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~ 99 (382)
T PRK10624 32 KALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVEVFKASGADYLIAIGGGSP 99 (382)
T ss_pred EEEEEeCcchhhCcchHHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCChHH
Confidence 688888754 34558889999999999976542 1335677788888888888889999999999865
No 42
>PRK11914 diacylglycerol kinase; Reviewed
Probab=90.78 E-value=1.1 Score=37.45 Aligned_cols=71 Identities=14% Similarity=0.106 Sum_probs=52.6
Q ss_pred eEEEEe----cCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCchhhhhhcc
Q 032094 60 IVGIIM----ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGTCSCC 134 (147)
Q Consensus 60 ~V~Iim----GS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLpGvvAg~ 134 (147)
++.||. |+.......+++.+.|++.|+++++... .+ +....++++.+...+.++|| ++|+.+.+--|+-++
T Consensus 10 ~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t--~~-~~~~~~~a~~~~~~~~d~vv-v~GGDGTi~evv~~l 84 (306)
T PRK11914 10 KVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVG--TD-AHDARHLVAAALAKGTDALV-VVGGDGVISNALQVL 84 (306)
T ss_pred eEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEe--CC-HHHHHHHHHHHHhcCCCEEE-EECCchHHHHHhHHh
Confidence 455543 5556677888899999999987766443 22 77888888777777788755 789999888888765
No 43
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=90.59 E-value=0.86 Score=39.42 Aligned_cols=67 Identities=10% Similarity=0.092 Sum_probs=53.4
Q ss_pred eEEEEecCCC-CHHHHHHHHHHHHHhCCCeEE-EEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCc
Q 032094 60 IVGIIMESDL-DLPVMNDAARTLSDFGVPYEI-KILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH 126 (147)
Q Consensus 60 ~V~IimGS~S-Dl~~~~~a~~~L~~fGI~~ev-~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAh 126 (147)
+|.|++|..- +....++....|++.|+.+.+ .-.-.|-+.+.+.+.++.+...++++|||+=|++..
T Consensus 28 ~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGs~i 96 (376)
T cd08193 28 RVLVVTDPGILKAGLIDPLLASLEAAGIEVTVFDDVEADPPEAVVEAAVEAARAAGADGVIGFGGGSSM 96 (376)
T ss_pred eEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHH
Confidence 6888887642 556788999999999997653 223478889999999988888899999999999764
No 44
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=90.44 E-value=1.6 Score=36.65 Aligned_cols=74 Identities=12% Similarity=0.126 Sum_probs=55.5
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhCCCeEEE-EEcCCCChHHHHHHHHHHhhCCceEEEEecCCCC-chhhhhhcc
Q 032094 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA-HLSGTCSCC 134 (147)
Q Consensus 60 ~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~-V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aA-hLpGvvAg~ 134 (147)
++.||+|...--...++..+.|++. +.+.+- ....+.+-+.+.+.++...+.+.++|||+-|++. -++..+|..
T Consensus 25 ~~liv~~~~~~~~~~~~v~~~l~~~-~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGs~~D~aK~ia~~ 100 (332)
T cd07766 25 RALVVSDEGVVKGVGEKVADSLKKL-IAVHIFDGVGPNPTFEEVKEAVERARAAEVDAVIAVGGGSTLDTAKAVAAL 100 (332)
T ss_pred eEEEEeCCchhhhHHHHHHHHHHhc-CcEEEeCCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCCchHHHHHHHHHHH
Confidence 6888887765447888899999887 766543 3456788888999988887788999999988764 355555543
No 45
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=90.37 E-value=1.1 Score=37.20 Aligned_cols=70 Identities=19% Similarity=0.264 Sum_probs=48.6
Q ss_pred EEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCchhhhhhccc
Q 032094 62 GIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGTCSCCK 135 (147)
Q Consensus 62 ~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLpGvvAg~T 135 (147)
.|+=|..+......+..+.|++.|+.+++..+ +.+....++++++...+.+++| ++|+.+.+--|+.++-
T Consensus 4 ~I~N~~~~~~~~~~~~~~~l~~~g~~~~v~~t---~~~~~a~~~a~~~~~~~~d~vv-~~GGDGTi~ev~ngl~ 73 (293)
T TIGR03702 4 LILNGKQADNEDVREAVGDLRDEGIQLHVRVT---WEKGDAQRYVAEALALGVSTVI-AGGGDGTLREVATALA 73 (293)
T ss_pred EEEeCCccchhHHHHHHHHHHHCCCeEEEEEe---cCCCCHHHHHHHHHHcCCCEEE-EEcCChHHHHHHHHHH
Confidence 34444444555677888889999998887744 3345556667666556677655 8899999999988864
No 46
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=90.19 E-value=1.5 Score=38.71 Aligned_cols=67 Identities=15% Similarity=0.177 Sum_probs=53.1
Q ss_pred eEEEEecCCC-CHHHHHHHHHHHHHhCCCeEEE-EEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCc
Q 032094 60 IVGIIMESDL-DLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH 126 (147)
Q Consensus 60 ~V~IimGS~S-Dl~~~~~a~~~L~~fGI~~ev~-V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAh 126 (147)
+|.|++|... .....+++.+.|++.|+.+.+- -+..+-+.+.+.+.++.+.+.++++|||+=|++..
T Consensus 25 ~vlivt~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGSvi 93 (414)
T cd08190 25 RVCLVTDPNLAQLPPVKVVLDSLEAAGINFEVYDDVRVEPTDESFKDAIAFAKKGQFDAFVAVGGGSVI 93 (414)
T ss_pred eEEEEECcchhhcchHHHHHHHHHHcCCcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccHH
Confidence 6888887643 3346788999999999987642 24478888999999988888899999999999754
No 47
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=90.18 E-value=2.1 Score=37.26 Aligned_cols=75 Identities=12% Similarity=0.178 Sum_probs=59.0
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEc---CCCChHHHHHHHHHHhhCCc----eEEEEecCC-CCchhhh
Q 032094 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP---PHQNCKEALSYALSAKERGI----KIIIVGDGV-EAHLSGT 130 (147)
Q Consensus 59 ~~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~S---AHRtp~~l~~~~~~~~~~g~----~ViIAvAG~-aAhLpGv 130 (147)
.++.||++....--..++..+.|+..|+++..-+.. .+.+.+.+.+..+.+...++ ++|||+-|+ ..-++++
T Consensus 27 ~~~lvVtd~~v~~~~~~~v~~~l~~~g~~~~~~v~~~~e~~~s~~~v~~~~~~l~~~~~~r~~d~IVaiGGG~v~D~ak~ 106 (354)
T cd08199 27 GRRFVVVDQNVDKLYGKKLREYFAHHNIPLTILVLRAGEAAKTMDTVLKIVDALDAFGISRRREPVLAIGGGVLTDVAGL 106 (354)
T ss_pred CeEEEEECccHHHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHH
Confidence 478889877665446778889999999988765555 58889999999887777777 999999886 5567777
Q ss_pred hhc
Q 032094 131 CSC 133 (147)
Q Consensus 131 vAg 133 (147)
+|+
T Consensus 107 ~A~ 109 (354)
T cd08199 107 AAS 109 (354)
T ss_pred HHH
Confidence 774
No 48
>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function.
Probab=90.14 E-value=1.1 Score=37.04 Aligned_cols=52 Identities=21% Similarity=0.412 Sum_probs=43.8
Q ss_pred CCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHH-----------HHHHHHHHhhCCceEEEE
Q 032094 68 DLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKE-----------ALSYALSAKERGIKIIIV 119 (147)
Q Consensus 68 ~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~-----------l~~~~~~~~~~g~~ViIA 119 (147)
.+|++.+++.++.|.+.|||+-+-|+..|..|.. +.++++++.++|-.|+.=
T Consensus 12 ~~~~~~l~~i~d~l~~~~ipf~v~vIP~~~d~~~~~~~~l~~~~~f~~~L~~~~~~Gg~I~lH 74 (243)
T PF10096_consen 12 FSDLEKLKEIADYLYKYGIPFSVAVIPVYVDPNGGITVNLSDNPEFVEYLRYLQARGGEIVLH 74 (243)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEecccCCCCcccccchhhHHHHHHHHHHHhcCCEEEEE
Confidence 6999999999999999999999999999887665 445567778888777653
No 49
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=89.80 E-value=0.82 Score=40.25 Aligned_cols=66 Identities=12% Similarity=0.067 Sum_probs=50.3
Q ss_pred eEEEEecC-CCCHHHHHHHHHHHHHhCCCeEEE-EEcCCCChHHHHHHHHHHhhCCceEEEEecCCCC
Q 032094 60 IVGIIMES-DLDLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (147)
Q Consensus 60 ~V~IimGS-~SDl~~~~~a~~~L~~fGI~~ev~-V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aA 125 (147)
++.|++|. -.+....+++.+.|++-||.+.+. -....=+.+.+.+.++.++..++++|||+=|+|.
T Consensus 51 ~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~~~D~IiavGGGS~ 118 (395)
T PRK15454 51 HLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRESGCDGVIAFGGGSV 118 (395)
T ss_pred EEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCcCEEEEeCChHH
Confidence 45555543 234567899999999999987643 3445666688899998888899999999999975
No 50
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=89.03 E-value=1.1 Score=39.07 Aligned_cols=66 Identities=15% Similarity=0.103 Sum_probs=52.1
Q ss_pred eEEEEecCC-CCHHHHHHHHHHHHHhCCCeEE-EEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCC
Q 032094 60 IVGIIMESD-LDLPVMNDAARTLSDFGVPYEI-KILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (147)
Q Consensus 60 ~V~IimGS~-SDl~~~~~a~~~L~~fGI~~ev-~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aA 125 (147)
+|.|++|.. .+....++..+.|++.||.+.+ .=+.++=+-+.+++.++.++..++++|||+=|+|.
T Consensus 33 ~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~D~IiaiGGGS~ 100 (383)
T PRK09860 33 RTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISLGGGSP 100 (383)
T ss_pred EEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcCCCEEEEeCCchH
Confidence 688888753 3466888999999999997532 22345777888999998888889999999999874
No 51
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=89.02 E-value=2 Score=36.74 Aligned_cols=73 Identities=8% Similarity=-0.067 Sum_probs=52.9
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEc--CCCChHHHHHHHHHHhhCCceEEEEecCCCC-chhhhhhc
Q 032094 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP--PHQNCKEALSYALSAKERGIKIIIVGDGVEA-HLSGTCSC 133 (147)
Q Consensus 60 ~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~S--AHRtp~~l~~~~~~~~~~g~~ViIAvAG~aA-hLpGvvAg 133 (147)
+|.||+++..-....+++.+.|++-|+.+++.... .+-+-+.+.+.++.+.. +.++|||+=|++. -+++.+|-
T Consensus 26 kvlivtd~~~~~~~~~~i~~~L~~~~~~~~i~~~~~~~~p~~~~v~~~~~~~~~-~~d~IIaiGGGsv~D~aK~iA~ 101 (332)
T cd08549 26 KIMIVCGNNTYKVAGKEIIERLESNNFTKEVLERDSLLIPDEYELGEVLIKLDK-DTEFLLGIGSGTIIDLVKFVSF 101 (332)
T ss_pred cEEEEECCcHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhc-CCCEEEEECCcHHHHHHHHHHH
Confidence 69999997765556788999999989877653222 33456777888877766 7899999988753 45556653
No 52
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=88.74 E-value=7.1 Score=30.28 Aligned_cols=73 Identities=21% Similarity=0.227 Sum_probs=57.3
Q ss_pred EEEEecCCCCH---HHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCchhhhhhcc
Q 032094 61 VGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGTCSCC 134 (147)
Q Consensus 61 V~IimGS~SDl---~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLpGvvAg~ 134 (147)
|+||+.+.++- ...+.+.+.++++|+.+++. ....-.+++..+.++++-.++++.||....-...+...+.-.
T Consensus 1 I~vi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~-~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~~~~~~l~~~ 76 (257)
T PF13407_consen 1 IGVIVPSMDNPFWQQVIKGAKAAAKELGYEVEIV-FDAQNDPEEQIEQIEQAISQGVDGIIVSPVDPDSLAPFLEKA 76 (257)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHHHTCEEEEE-EESTTTHHHHHHHHHHHHHTTESEEEEESSSTTTTHHHHHHH
T ss_pred cEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEe-CCCCCCHHHHHHHHHHHHHhcCCEEEecCCCHHHHHHHHHHH
Confidence 68888888884 24456677778888866655 679999999999999998999999998888877777666543
No 53
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=88.59 E-value=1.6 Score=35.83 Aligned_cols=68 Identities=13% Similarity=0.110 Sum_probs=44.3
Q ss_pred CeEEEEecCCCCHHHH-----HHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEec----CCCCchhh
Q 032094 59 PIVGIIMESDLDLPVM-----NDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD----GVEAHLSG 129 (147)
Q Consensus 59 ~~V~IimGS~SDl~~~-----~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvA----G~aAhLpG 129 (147)
.+|+|++|+.|+.... ..+.+.|++.|+.+++-- .. +.+.+.++ ..++++++-.. |...++++
T Consensus 5 ~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~--~~---~~~~~~~~---~~~~D~v~~~~~g~~~~~~~~~~ 76 (304)
T PRK01372 5 GKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPID--PG---EDIAAQLK---ELGFDRVFNALHGRGGEDGTIQG 76 (304)
T ss_pred cEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEe--cC---cchHHHhc---cCCCCEEEEecCCCCCCccHHHH
Confidence 4799999999986655 899999999999765432 22 12233332 23577777553 45666777
Q ss_pred hhhcc
Q 032094 130 TCSCC 134 (147)
Q Consensus 130 vvAg~ 134 (147)
++..+
T Consensus 77 ~le~~ 81 (304)
T PRK01372 77 LLELL 81 (304)
T ss_pred HHHHc
Confidence 76544
No 54
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=88.50 E-value=2.1 Score=29.60 Aligned_cols=51 Identities=25% Similarity=0.299 Sum_probs=38.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHH-hhCCc-eEEE
Q 032094 67 SDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSA-KERGI-KIII 118 (147)
Q Consensus 67 S~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~-~~~g~-~ViI 118 (147)
+.++=|.|.++.+.|++.|++|+...+..|.. ++..++++.. ..+.+ .|||
T Consensus 7 t~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~-~~~~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 7 TKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEP-EEAREMVKRGKGQRTVPQIFI 59 (80)
T ss_pred ECCCCchHHHHHHHHHHcCCCcEEEEecCCcH-HHHHHHHHHhCCCCCcCEEEE
Confidence 45568999999999999999999988877766 6777777655 23333 4554
No 55
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=88.44 E-value=5.2 Score=26.21 Aligned_cols=55 Identities=13% Similarity=-0.001 Sum_probs=34.5
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCC-ceEEE
Q 032094 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERG-IKIII 118 (147)
Q Consensus 60 ~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g-~~ViI 118 (147)
+|-|.+-+ .=|.|++|.+.|++.||+|+..=+. ..++...++.+...... ..|||
T Consensus 2 ~v~ly~~~--~C~~C~ka~~~L~~~gi~~~~~di~--~~~~~~~el~~~~g~~~vP~v~i 57 (73)
T cd03027 2 RVTIYSRL--GCEDCTAVRLFLREKGLPYVEINID--IFPERKAELEERTGSSVVPQIFF 57 (73)
T ss_pred EEEEEecC--CChhHHHHHHHHHHCCCceEEEECC--CCHHHHHHHHHHhCCCCcCEEEE
Confidence 34444443 4488999999999999999966554 34555555554333222 35554
No 56
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=88.41 E-value=6.6 Score=31.56 Aligned_cols=66 Identities=14% Similarity=0.268 Sum_probs=46.9
Q ss_pred CCCeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCC
Q 032094 57 DAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE 124 (147)
Q Consensus 57 ~~~~V~IimGS~SD---l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~a 124 (147)
+...|+++..+.+| ..+.+.+.+.++++|+.. -+......+++..++++....++++.+|..+...
T Consensus 25 ~~~~I~vi~~~~~~~f~~~~~~~i~~~~~~~G~~~--~~~~~~~d~~~~~~~~~~l~~~~~dgiii~~~~~ 93 (295)
T PRK10653 25 AKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNL--VVLDSQNNPAKELANVQDLTVRGTKILLINPTDS 93 (295)
T ss_pred cCCeEEEEecCCCChHHHHHHHHHHHHHHHcCCeE--EEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 44579999987665 334455667778898654 4455677888888888877777888777765543
No 57
>PLN02834 3-dehydroquinate synthase
Probab=87.95 E-value=3.2 Score=37.40 Aligned_cols=75 Identities=13% Similarity=0.177 Sum_probs=57.6
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEE--EEEc---CCCChHHHHHHHHHHhhCCce---EEEEecCCC-Cchhh
Q 032094 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEI--KILP---PHQNCKEALSYALSAKERGIK---IIIVGDGVE-AHLSG 129 (147)
Q Consensus 59 ~~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev--~V~S---AHRtp~~l~~~~~~~~~~g~~---ViIAvAG~a-AhLpG 129 (147)
.+|.||++..-.--..+++.+.|+.-|+++++ .+.. .+++.+.+.+.++.+...+++ +|||+-|++ .-++|
T Consensus 101 ~rvlIVtD~~v~~~~~~~v~~~L~~~g~~~~v~~~v~~~gE~~ksl~~v~~~~~~l~~~~~dr~~~VIAiGGGsv~D~ak 180 (433)
T PLN02834 101 KRVLVVTNETVAPLYLEKVVEALTAKGPELTVESVILPDGEKYKDMETLMKVFDKALESRLDRRCTFVALGGGVIGDMCG 180 (433)
T ss_pred CEEEEEECccHHHHHHHHHHHHHHhcCCceEEEEEEecCCcCCCCHHHHHHHHHHHHhcCCCcCcEEEEECChHHHHHHH
Confidence 47889988776666888899999999987665 3444 467888888888777777777 999998874 45777
Q ss_pred hhhc
Q 032094 130 TCSC 133 (147)
Q Consensus 130 vvAg 133 (147)
++|+
T Consensus 181 ~~A~ 184 (433)
T PLN02834 181 FAAA 184 (433)
T ss_pred HHHH
Confidence 7764
No 58
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=87.74 E-value=2.5 Score=29.43 Aligned_cols=60 Identities=27% Similarity=0.277 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCchhhhhhcc
Q 032094 72 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGTCSCC 134 (147)
Q Consensus 72 ~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLpGvvAg~ 134 (147)
...+++.+.+++.|++++..+...+...+.+.+++ ++.++++||.+..+...+...+-|.
T Consensus 56 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~~~a---~~~~~dlIV~G~~~~~~~~~~~lGs 115 (132)
T cd01988 56 KLLRQAERIAASLGVPVHTIIRIDHDIASGILRTA---KERQADLIIMGWHGSTSLRDRLFGG 115 (132)
T ss_pred HHHHHHHHHhhhcCCceEEEEEecCCHHHHHHHHH---HhcCCCEEEEecCCCCCccceecCc
Confidence 44556666667789998888765555445555554 4567899999998888775544443
No 59
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=87.59 E-value=4.9 Score=29.66 Aligned_cols=64 Identities=13% Similarity=0.220 Sum_probs=44.0
Q ss_pred EEEEecCC----CCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCC
Q 032094 61 VGIIMESD----LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE 124 (147)
Q Consensus 61 V~IimGS~----SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~a 124 (147)
|+++..+. .-....+.+...++++|..+++.+......++...+.++....++++.+|......
T Consensus 2 Ig~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~ 69 (269)
T cd01391 2 IGVLLPLSGSAPFGAQLLAGIELAAEEIGRGLEVILADSQSDPERALEALRDLIQQGVDGIIGPPSSS 69 (269)
T ss_pred ceEEeecCCCcHHHHHHHHHHHHHHHHhCCceEEEEecCCCCHHHHHHHHHHHHHcCCCEEEecCCCH
Confidence 56666433 12333345556677767778888888888888888888777777888888765543
No 60
>PRK13055 putative lipid kinase; Reviewed
Probab=87.40 E-value=2 Score=36.72 Aligned_cols=67 Identities=18% Similarity=0.172 Sum_probs=47.8
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCchhhhhhccc
Q 032094 66 ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGTCSCCK 135 (147)
Q Consensus 66 GS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLpGvvAg~T 135 (147)
|+.......+++.+.|++.|+.+++....-+ +....++++.+...+.+++| ++|+.+.|--|+.++-
T Consensus 14 G~~~~~~~~~~i~~~l~~~g~~~~i~~t~~~--~~~a~~~~~~~~~~~~d~vv-v~GGDGTl~evvngl~ 80 (334)
T PRK13055 14 GQEIMKKNVADILDILEQAGYETSAFQTTPE--PNSAKNEAKRAAEAGFDLII-AAGGDGTINEVVNGIA 80 (334)
T ss_pred CchhHHHHHHHHHHHHHHcCCeEEEEEeecC--CccHHHHHHHHhhcCCCEEE-EECCCCHHHHHHHHHh
Confidence 5555567778889999999998877665433 34455566555556678766 6699999888887753
No 61
>PRK13337 putative lipid kinase; Reviewed
Probab=87.24 E-value=1.8 Score=36.27 Aligned_cols=66 Identities=17% Similarity=0.147 Sum_probs=47.2
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCchhhhhhccc
Q 032094 66 ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGTCSCCK 135 (147)
Q Consensus 66 GS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLpGvvAg~T 135 (147)
|+........++...|++.|+++++..+. .+.+..++++.+..++.++ |.++|+.+.|-.|+.++.
T Consensus 13 G~~~~~~~~~~~~~~l~~~~~~~~~~~t~---~~~~a~~~a~~~~~~~~d~-vvv~GGDGTl~~vv~gl~ 78 (304)
T PRK13337 13 GRELFKKNLPDVLQKLEQAGYETSAHATT---GPGDATLAAERAVERKFDL-VIAAGGDGTLNEVVNGIA 78 (304)
T ss_pred cchhHHHHHHHHHHHHHHcCCEEEEEEec---CCCCHHHHHHHHHhcCCCE-EEEEcCCCHHHHHHHHHh
Confidence 44344455667788899999988887665 3456666666666667776 447899999999988753
No 62
>PRK15138 aldehyde reductase; Provisional
Probab=87.00 E-value=1.8 Score=37.94 Aligned_cols=66 Identities=14% Similarity=0.103 Sum_probs=47.9
Q ss_pred CeEEEEecCCCC--HHHHHHHHHHHHHhCCCeEEE-EEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCc
Q 032094 59 PIVGIIMESDLD--LPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH 126 (147)
Q Consensus 59 ~~V~IimGS~SD--l~~~~~a~~~L~~fGI~~ev~-V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAh 126 (147)
.++.|++|..|- ....+++.+.|+ |+.+.+. -+.++=+.+.+++.++.++..++++|||+=|+|.-
T Consensus 30 ~~~livt~~~~~~~~g~~~~v~~~L~--~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~i 98 (387)
T PRK15138 30 ARVLITYGGGSVKKTGVLDQVLDALK--GMDVLEFGGIEPNPTYETLMKAVKLVREEKITFLLAVGGGSVL 98 (387)
T ss_pred CeEEEECCCchHHhcCcHHHHHHHhc--CCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCChHHH
Confidence 378899886542 345677777775 6654332 23467778899999988888899999999998753
No 63
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=86.71 E-value=7 Score=31.77 Aligned_cols=73 Identities=12% Similarity=0.069 Sum_probs=50.9
Q ss_pred eEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCchhhhhh
Q 032094 60 IVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGTCS 132 (147)
Q Consensus 60 ~V~IimGS~SD---l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLpGvvA 132 (147)
+|++|..+.+| ..+.+.+.+.++++|..+++.+...+..+++..++++.+...+++.||..+.....+..++.
T Consensus 1 ~Igviv~~~~~~~~~~~~~gi~~~a~~~~~g~~~~~~~~~~~~~~q~~~i~~l~~~~vdgiii~~~~~~~~~~~~~ 76 (303)
T cd01539 1 KIGVFLYKFDDTFISLVRKNLEDIQKENGGKVEFTFYDAKNNQSTQNEQIDTALAKGVDLLAVNLVDPTAAQTVIN 76 (303)
T ss_pred CeEEEeeCCCChHHHHHHHHHHHHHHhhCCCeeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEecCchhhHHHHHH
Confidence 36777765444 23345667777786667788888889999988888888878889888776554444445444
No 64
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=86.41 E-value=2.4 Score=26.77 Aligned_cols=48 Identities=19% Similarity=0.230 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCc-eEEE
Q 032094 69 LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI-KIII 118 (147)
Q Consensus 69 SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~-~ViI 118 (147)
..=|.|+++.+.|++.|++|+..=++-+ ++...++.+..+..++ .|||
T Consensus 7 ~~C~~C~~~~~~L~~~~i~y~~~dv~~~--~~~~~~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 7 PGCPYCKKAKEFLDEKGIPYEEVDVDED--EEAREELKELSGVRTVPQVFI 55 (60)
T ss_dssp TTSHHHHHHHHHHHHTTBEEEEEEGGGS--HHHHHHHHHHHSSSSSSEEEE
T ss_pred CCCcCHHHHHHHHHHcCCeeeEcccccc--hhHHHHHHHHcCCCccCEEEE
Confidence 5668999999999999999887666655 3555555554333333 4444
No 65
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=86.35 E-value=5.3 Score=26.50 Aligned_cols=58 Identities=24% Similarity=0.284 Sum_probs=43.4
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecC
Q 032094 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 122 (147)
Q Consensus 60 ~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG 122 (147)
.|.|+.-+..+.+.+.+.+..|+..|+.+++... .+.+....++++ ..|+..+|-+..
T Consensus 3 ~v~ii~~~~~~~~~a~~~~~~Lr~~g~~v~~d~~--~~~~~~~~~~a~---~~g~~~~iiig~ 60 (91)
T cd00860 3 QVVVIPVTDEHLDYAKEVAKKLSDAGIRVEVDLR--NEKLGKKIREAQ---LQKIPYILVVGD 60 (91)
T ss_pred EEEEEeeCchHHHHHHHHHHHHHHCCCEEEEECC--CCCHHHHHHHHH---HcCCCEEEEECc
Confidence 5778887888899999999999999998877553 477777766654 567766665543
No 66
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=86.28 E-value=3 Score=36.31 Aligned_cols=64 Identities=22% Similarity=0.247 Sum_probs=47.8
Q ss_pred eEEEEecCCCC-HHHHHHHHHHHHHhCCCeEEEEEcC---CCChHHHHHHHHHHhhCCceEEEEecCCCC
Q 032094 60 IVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPP---HQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (147)
Q Consensus 60 ~V~IimGS~SD-l~~~~~a~~~L~~fGI~~ev~V~SA---HRtp~~l~~~~~~~~~~g~~ViIAvAG~aA 125 (147)
+|.|++|...- ....++..+.|++-|+.+.+ .+- +-..+.+.+.++.+.+.++++|||+-|+|.
T Consensus 24 ~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~--f~~v~~~~~~~~v~~~~~~~~~~~~D~IIaiGGGS~ 91 (386)
T cd08191 24 RALIVTDERMAGTPVFAELVQALAAAGVEVEV--FDGVLPDLPRSELCDAASAAARAGPDVIIGLGGGSC 91 (386)
T ss_pred eEEEEECcchhhcchHHHHHHHHHHcCCeEEE--ECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchH
Confidence 68889886554 47888999999999987653 333 334555666677677788999999999875
No 67
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=86.13 E-value=4.3 Score=33.50 Aligned_cols=65 Identities=17% Similarity=0.103 Sum_probs=46.3
Q ss_pred eEEEEecCCCC--HHHHHHHHHHHHHhCCCe---EEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCC
Q 032094 60 IVGIIMESDLD--LPVMNDAARTLSDFGVPY---EIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE 124 (147)
Q Consensus 60 ~V~IimGS~SD--l~~~~~a~~~L~~fGI~~---ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~a 124 (147)
+|+|+-=...| .+..+-..+.|++.|+.- ++.+-.+.+.++++.+++++.....+++||++...+
T Consensus 1 ~v~i~~~~~~~~~~~~~~gf~~~L~~~g~~~~~~~~~~~~a~~d~~~~~~~~~~l~~~~~DlIi~~gt~a 70 (294)
T PF04392_consen 1 KVGILQFISHPALDDIVRGFKDGLKELGYDEKNVEIEYKNAEGDPEKLRQIARKLKAQKPDLIIAIGTPA 70 (294)
T ss_dssp EEEEEESS--HHHHHHHHHHHHHHHHTT--CCCEEEEEEE-TT-HHHHHHHHHHHCCTS-SEEEEESHHH
T ss_pred CeEEEEEeccHHHHHHHHHHHHHHHHcCCccccEEEEEecCCCCHHHHHHHHHHHhcCCCCEEEEeCcHH
Confidence 35665544444 566777888999999985 788899999999999999988888899999986544
No 68
>PRK13054 lipid kinase; Reviewed
Probab=86.01 E-value=4.5 Score=33.74 Aligned_cols=61 Identities=15% Similarity=0.239 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCchhhhhhccc
Q 032094 71 LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGTCSCCK 135 (147)
Q Consensus 71 l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLpGvvAg~T 135 (147)
.....+....|++-|+++++... +.++...++++++...+.+++| ++|+.+.|-.|+.++.
T Consensus 17 ~~~~~~~~~~l~~~g~~~~v~~t---~~~~~a~~~a~~~~~~~~d~vv-v~GGDGTl~evv~~l~ 77 (300)
T PRK13054 17 NEELREAVGLLREEGHTLHVRVT---WEKGDAARYVEEALALGVATVI-AGGGDGTINEVATALA 77 (300)
T ss_pred hHHHHHHHHHHHHcCCEEEEEEe---cCCCcHHHHHHHHHHcCCCEEE-EECCccHHHHHHHHHH
Confidence 45667777889999998777444 3355566777666666778665 7899999999998854
No 69
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=85.17 E-value=2.4 Score=36.23 Aligned_cols=72 Identities=15% Similarity=0.089 Sum_probs=50.8
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCc-hhhhhh
Q 032094 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGTCS 132 (147)
Q Consensus 60 ~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAh-LpGvvA 132 (147)
++.|++|...--...++..+.|++.++. .+.-...|-+.+.+.+.++.....++++|||+-|++.. ++.++|
T Consensus 25 ~~livt~~~~~~~~~~~v~~~l~~~~~~-~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGs~iD~aK~ia 97 (337)
T cd08177 25 RALVLTTPSLATKLAERVASALGDRVAG-TFDGAVMHTPVEVTEAAVAAAREAGADGIVAIGGGSTIDLAKAIA 97 (337)
T ss_pred eEEEEcChHHHHHHHHHHHHHhccCCcE-EeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHH
Confidence 6888988765444777888888876432 12223467778888888888877889999999998653 333443
No 70
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=85.00 E-value=14 Score=29.85 Aligned_cols=73 Identities=14% Similarity=0.056 Sum_probs=49.8
Q ss_pred CeEEEEecCC--CCHHHHHHHHHHHHHhCCCeE-EEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCchhhhh
Q 032094 59 PIVGIIMESD--LDLPVMNDAARTLSDFGVPYE-IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGTC 131 (147)
Q Consensus 59 ~~V~IimGS~--SDl~~~~~a~~~L~~fGI~~e-v~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLpGvv 131 (147)
.+|.|+.||. .|-.-+.++++.|++-||..+ +.+-..+-+.++++.|.+...+++-.=||.+.-+.+-|.=++
T Consensus 108 ~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~~~~~~~s~~~~~~~~~~~lsd~~ 183 (187)
T cd01452 108 QRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDAVNGKDGSHLVSVPPGENLLSDAL 183 (187)
T ss_pred ceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHHhcCCCCceEEEeCCCCchhHHHh
Confidence 4788888887 455667789999999999977 444448999999999998875432233344433333354433
No 71
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=84.59 E-value=5 Score=32.81 Aligned_cols=92 Identities=9% Similarity=0.074 Sum_probs=58.4
Q ss_pred HHHhhcccccccccCCCcccccCCCCCCCCCCCeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHH
Q 032094 27 GSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEAL 103 (147)
Q Consensus 27 ~~~k~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~SD---l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~ 103 (147)
++.+++...+++++......... ....++...|+++..+.+| ..+.+.+.+.++++| |++.+...+..+++..
T Consensus 30 ~~tr~~V~~~a~elgY~pn~~a~--~l~~~~~~~i~vi~~~~~~~~~~~~~~gi~~~~~~~g--~~~~~~~~~~~~~~~~ 105 (341)
T PRK10703 30 EETRNAVWAAIKELHYSPSAVAR--SLKVNHTKSIGLLATSSEAPYFAEIIEAVEKNCYQKG--YTLILCNAWNNLEKQR 105 (341)
T ss_pred HHHHHHHHHHHHHHCCCcCHHHH--HHhhCCCCeEEEEeCCCCCchHHHHHHHHHHHHHHCC--CEEEEEeCCCCHHHHH
Confidence 35566666777777553210000 1122233578988865444 233456666777888 5677777888899888
Q ss_pred HHHHHHhhCCceEEEEecC
Q 032094 104 SYALSAKERGIKIIIVGDG 122 (147)
Q Consensus 104 ~~~~~~~~~g~~ViIAvAG 122 (147)
++++....++++.||...+
T Consensus 106 ~~i~~l~~~~vdgiii~~~ 124 (341)
T PRK10703 106 AYLSMLAQKRVDGLLVMCS 124 (341)
T ss_pred HHHHHHHHcCCCEEEEecC
Confidence 8888887888988877654
No 72
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=84.11 E-value=9.3 Score=31.13 Aligned_cols=92 Identities=8% Similarity=0.077 Sum_probs=56.5
Q ss_pred HHhhcccccccccCCCcccccCCCCCCCCCCCeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHH
Q 032094 28 SATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALS 104 (147)
Q Consensus 28 ~~k~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~SD---l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~ 104 (147)
+.+++...+++++......... .........|+++..+.++ ..+.+.+.+.+++.| |.+.+......++...+
T Consensus 36 ~tr~~V~~~a~elgY~p~~~a~--~l~~~~~~~Igvv~~~~~~~~~~~i~~gi~~~a~~~g--~~~~~~~~~~~~~~~~~ 111 (342)
T PRK10014 36 ATGERVNQAIEELGFVRNRQAS--ALRGGQSGVIGLIVRDLSAPFYAELTAGLTEALEAQG--RMVFLLQGGKDGEQLAQ 111 (342)
T ss_pred HHHHHHHHHHHHhCCCcCHHHH--hhccCCCCEEEEEeCCCccchHHHHHHHHHHHHHHcC--CEEEEEeCCCCHHHHHH
Confidence 4455555566666543210000 1122233579999876444 334455667778888 56666667788888888
Q ss_pred HHHHHhhCCceEEEEecCC
Q 032094 105 YALSAKERGIKIIIVGDGV 123 (147)
Q Consensus 105 ~~~~~~~~g~~ViIAvAG~ 123 (147)
+++.....+++.||.....
T Consensus 112 ~~~~l~~~~vdgiIi~~~~ 130 (342)
T PRK10014 112 RFSTLLNQGVDGVVIAGAA 130 (342)
T ss_pred HHHHHHhCCCCEEEEeCCC
Confidence 8887777788888876553
No 73
>PRK00861 putative lipid kinase; Reviewed
Probab=83.97 E-value=2.7 Score=34.91 Aligned_cols=66 Identities=21% Similarity=0.163 Sum_probs=46.9
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCchhhhhhcccc
Q 032094 66 ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGTCSCCKF 136 (147)
Q Consensus 66 GS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLpGvvAg~T~ 136 (147)
|+.+.....+++...|++ ++++++.++.... ...++++.+...+.+++| ++|+.+.|-.|+.++..
T Consensus 14 G~~~~~~~~~~i~~~l~~-~~~~~~~~t~~~~---~a~~~a~~~~~~~~d~vv-~~GGDGTl~evv~~l~~ 79 (300)
T PRK00861 14 GQGNPEVDLALIRAILEP-EMDLDIYLTTPEI---GADQLAQEAIERGAELII-ASGGDGTLSAVAGALIG 79 (300)
T ss_pred CCCchhhhHHHHHHHHHh-cCceEEEEccCCC---CHHHHHHHHHhcCCCEEE-EECChHHHHHHHHHHhc
Confidence 555555566778888887 5788888876543 445566555556778766 58999999999988743
No 74
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=83.51 E-value=5 Score=34.12 Aligned_cols=66 Identities=15% Similarity=0.065 Sum_probs=47.8
Q ss_pred eEEEEecCCCC-HHHHHHHHHHHHHhCCCeEE-EEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCc
Q 032094 60 IVGIIMESDLD-LPVMNDAARTLSDFGVPYEI-KILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH 126 (147)
Q Consensus 60 ~V~IimGS~SD-l~~~~~a~~~L~~fGI~~ev-~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAh 126 (147)
++.||+|..-. ....++..+.|++- +++.+ .-...+.+.+.+.+.++.+.+.++++||++-|++..
T Consensus 24 ~~lvv~~~~~~~~g~~~~v~~~l~~~-~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IiaiGGGs~~ 91 (332)
T cd08180 24 RVLIVTDPFMVKSGMLDKVTDHLDSS-IEVEIFSDVVPDPPIEVVAKGIKKFLDFKPDIVIALGGGSAI 91 (332)
T ss_pred eEEEEeCchhhhCccHHHHHHHHHhc-CcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEECCchHH
Confidence 68888875332 23667777788765 65432 223477888888898888888899999999998765
No 75
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=83.10 E-value=16 Score=28.55 Aligned_cols=63 Identities=11% Similarity=0.138 Sum_probs=42.5
Q ss_pred eEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCC
Q 032094 60 IVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE 124 (147)
Q Consensus 60 ~V~IimGS~SD---l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~a 124 (147)
+|++++...+| ...++.+.+.+++.|. ++.+......++...++++....++++.||..+...
T Consensus 1 ~igv~~~~~~~~~~~~~~~~i~~~~~~~g~--~v~~~~~~~~~~~~~~~i~~~~~~~~Dgiii~~~~~ 66 (282)
T cd06318 1 KIGFSQYTLNSPFFAALTEAAKAHAKALGY--ELISTDAQGDLTKQIADVEDLLTRGVNVLIINPVDP 66 (282)
T ss_pred CeeEEeccccCHHHHHHHHHHHHHHHHcCC--EEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEecCCc
Confidence 36777776555 2233455566777875 566666777888888888878788888777765433
No 76
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=82.55 E-value=15 Score=28.52 Aligned_cols=70 Identities=9% Similarity=0.066 Sum_probs=46.7
Q ss_pred eEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCchhhhh
Q 032094 60 IVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGTC 131 (147)
Q Consensus 60 ~V~IimGS~SD---l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLpGvv 131 (147)
+|+++..+.+| ....+.+.+.++++|+.+.+ ...=..|+...++++..-.++++.||..++.......++
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~--~~~~~~~~~~~~~l~~~~~~~vdgii~~~~~~~~~~~~i 73 (273)
T cd06305 1 RIAVVRYGGSGDFDQAYLAGTKAEAEALGGDLRV--YDAGGDDAKQADQIDQAIAQKVDAIIIQHGRAEVLKPWV 73 (273)
T ss_pred CeEEEeecCCCcHHHHHHHHHHHHHHHcCCEEEE--ECCCCCHHHHHHHHHHHHHcCCCEEEEecCChhhhHHHH
Confidence 37788876666 23455667778889876554 444456777777777766678999988876554444443
No 77
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=81.80 E-value=6.8 Score=35.06 Aligned_cols=67 Identities=21% Similarity=0.242 Sum_probs=55.0
Q ss_pred eEEEEecCC-CCHHHHHHHHHHHHHhCCCeEEE-EEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCc
Q 032094 60 IVGIIMESD-LDLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH 126 (147)
Q Consensus 60 ~V~IimGS~-SDl~~~~~a~~~L~~fGI~~ev~-V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAh 126 (147)
++.|+++.. ..+..+++..+.|+.-||+|.+. =+..+-+-+.+.+-++.+++.+++.|||+-|+|..
T Consensus 31 r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~if~~v~p~P~~~~v~~~~~~~~~~~~D~iIalGGGS~~ 99 (377)
T COG1454 31 RALIVTDRGLAKLGLLDKVLDSLDAAGIEYEVFDEVEPEPTIETVEAGAEVAREFGPDTIIALGGGSVI 99 (377)
T ss_pred ceEEEECCccccchhHHHHHHHHHhcCCeEEEecCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCccHH
Confidence 688888765 56789999999999999887743 34477777888888888889999999999999853
No 78
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=81.04 E-value=5.5 Score=35.23 Aligned_cols=65 Identities=17% Similarity=0.075 Sum_probs=54.5
Q ss_pred EEEE--ecCCCCHHHHHHHHHHHHHhCC-CeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCC
Q 032094 61 VGII--MESDLDLPVMNDAARTLSDFGV-PYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (147)
Q Consensus 61 V~Ii--mGS~SDl~~~~~a~~~L~~fGI-~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aA 125 (147)
|+|. .--++=....+-+.+.|+++|. +.++.+-++|=.+....++++....++.+|||++++-+|
T Consensus 33 VaI~~~veHpaLd~~~~G~~~aLk~~G~~n~~i~~~na~~~~~~a~~iarql~~~~~dviv~i~tp~A 100 (322)
T COG2984 33 VAITQFVEHPALDAAREGVKEALKDAGYKNVKIDYQNAQGDLGTAAQIARQLVGDKPDVIVAIATPAA 100 (322)
T ss_pred EEEEEeecchhHHHHHHHHHHHHHhcCccCeEEEeecCCCChHHHHHHHHHhhcCCCcEEEecCCHHH
Confidence 5554 4445556677888899999999 889999999999999999999998889999999998443
No 79
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=80.95 E-value=11 Score=24.29 Aligned_cols=49 Identities=20% Similarity=0.080 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhC-C-ceEEEE
Q 032094 69 LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER-G-IKIIIV 119 (147)
Q Consensus 69 SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~-g-~~ViIA 119 (147)
++=|.|.++...|++.||+|+..-+. ..++...++.+..... + +.|||.
T Consensus 8 ~~Cp~C~~ak~~L~~~~i~~~~i~i~--~~~~~~~~~~~~~~~~~~vP~v~i~ 58 (75)
T cd03418 8 PNCPYCVRAKALLDKKGVDYEEIDVD--GDPALREEMINRSGGRRTVPQIFIG 58 (75)
T ss_pred CCChHHHHHHHHHHHCCCcEEEEECC--CCHHHHHHHHHHhCCCCccCEEEEC
Confidence 45599999999999999999865443 4477777766544332 2 355543
No 80
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=80.93 E-value=10 Score=34.53 Aligned_cols=101 Identities=8% Similarity=-0.099 Sum_probs=66.0
Q ss_pred eeeecCChHHHhhcccccccccCCCcccccCCCCCCCCCCCeEEEE----ecCCCCHHHHH-HHHHHHHHhCCCeEEEEE
Q 032094 19 IPVLASSNGSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGII----MESDLDLPVMN-DAARTLSDFGVPYEIKIL 93 (147)
Q Consensus 19 itVta~~l~~~k~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~V~Ii----mGS~SDl~~~~-~a~~~L~~fGI~~ev~V~ 93 (147)
.+.-..|.+.+..-++-+.+.++.. ..+.++.|| .|..+.....+ ++...|+..|+.+++.++
T Consensus 84 ~~~~~~~~~~~~~w~~~~~~~~~~~------------~~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~~gi~~~v~~T 151 (481)
T PLN02958 84 FVFEPLSDESRRLWCQKLRDYLDSL------------GRPKRLLVFVNPFGGKKSASKIFFDVVKPLLEDADIQLTIQET 151 (481)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhc------------cCCcEEEEEEcCCCCCcchhHHHHHHHHHHHHHcCCeEEEEec
Confidence 4455666666666665555554432 122355565 46666666655 577799999999888766
Q ss_pred cCCCChHHHHHHHHHHhhCCceEEEEecCCCCchhhhhhccc
Q 032094 94 PPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGTCSCCK 135 (147)
Q Consensus 94 SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLpGvvAg~T 135 (147)
- .+....++++++...+.+.||+ +|+.+-|--|+-|+-
T Consensus 152 ~---~~ghA~~la~~~~~~~~D~VV~-vGGDGTlnEVvNGL~ 189 (481)
T PLN02958 152 K---YQLHAKEVVRTMDLSKYDGIVC-VSGDGILVEVVNGLL 189 (481)
T ss_pred c---CccHHHHHHHHhhhcCCCEEEE-EcCCCHHHHHHHHHh
Confidence 4 3366677777665666777664 688888887877763
No 81
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=80.59 E-value=13 Score=24.24 Aligned_cols=29 Identities=31% Similarity=0.279 Sum_probs=22.6
Q ss_pred EEEEcCCCChHHHHHHHHHHhhCCceEEE
Q 032094 90 IKILPPHQNCKEALSYALSAKERGIKIII 118 (147)
Q Consensus 90 v~V~SAHRtp~~l~~~~~~~~~~g~~ViI 118 (147)
+-++|..+...++.+.++.++++|.+++.
T Consensus 51 ~i~iS~sg~t~~~~~~~~~a~~~g~~ii~ 79 (87)
T cd04795 51 VIALSYSGRTEELLAALEIAKELGIPVIA 79 (87)
T ss_pred EEEEECCCCCHHHHHHHHHHHHcCCeEEE
Confidence 66777888888888888888888877543
No 82
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=79.81 E-value=15 Score=29.81 Aligned_cols=91 Identities=9% Similarity=0.085 Sum_probs=56.3
Q ss_pred HHhhcccccccccCCCcccccCCCCCCCCCCCeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHH
Q 032094 28 SATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALS 104 (147)
Q Consensus 28 ~~k~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~SD---l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~ 104 (147)
+.+++...+++++......... .........|++++...+| ..+.+.+.+.+++.|. .+.+......+++..+
T Consensus 32 ~tr~rV~~~a~~lgY~pn~~a~--~l~~~~~~~Igvi~~~~~~~~~~~~~~~i~~~~~~~gy--~~~i~~~~~~~~~~~~ 107 (327)
T TIGR02417 32 ETVERVMAVVREQGYQPNIHAA--SLRAGRSRTIGLVIPDLENYSYARIAKELEQQCREAGY--QLLIACSDDNPDQEKV 107 (327)
T ss_pred HHHHHHHHHHHHhCCCCCHHHH--HhhcCCCceEEEEeCCCCCccHHHHHHHHHHHHHHCCC--EEEEEeCCCCHHHHHH
Confidence 5666666777777653210000 0122234579999875444 3345566667777775 5556666778888888
Q ss_pred HHHHHhhCCceEEEEecC
Q 032094 105 YALSAKERGIKIIIVGDG 122 (147)
Q Consensus 105 ~~~~~~~~g~~ViIAvAG 122 (147)
+++....++++-+|....
T Consensus 108 ~~~~l~~~~vdgiIi~~~ 125 (327)
T TIGR02417 108 VIENLLARQVDALIVASC 125 (327)
T ss_pred HHHHHHHcCCCEEEEeCC
Confidence 887777778887776543
No 83
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=79.80 E-value=14 Score=29.79 Aligned_cols=92 Identities=5% Similarity=0.065 Sum_probs=56.3
Q ss_pred HHHhhcccccccccCCCcccccCCCCCCCCCCCeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHH
Q 032094 27 GSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEAL 103 (147)
Q Consensus 27 ~~~k~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~SD---l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~ 103 (147)
++.+++....++++......... .....+...|++++...+| ....+.+.+.+++.| |++.+......+++..
T Consensus 27 ~~tr~rV~~~a~~lgY~pn~~a~--~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g--~~~~~~~~~~~~~~~~ 102 (327)
T PRK10423 27 EAITAKVEAAIKELNYAPSALAR--SLKLNQTRTIGMLITASTNPFYSELVRGVERSCFERG--YSLVLCNTEGDEQRMN 102 (327)
T ss_pred HHHHHHHHHHHHHHCCCccHHHH--HHhhCCCCeEEEEeCCCCCCcHHHHHHHHHHHHHHcC--CEEEEEeCCCCHHHHH
Confidence 35566666666666553110000 1122244579999865443 344566677788888 5566666677788887
Q ss_pred HHHHHHhhCCceEEEEecC
Q 032094 104 SYALSAKERGIKIIIVGDG 122 (147)
Q Consensus 104 ~~~~~~~~~g~~ViIAvAG 122 (147)
++++....++++-+|....
T Consensus 103 ~~~~~l~~~~vdGiI~~~~ 121 (327)
T PRK10423 103 RNLETLMQKRVDGLLLLCT 121 (327)
T ss_pred HHHHHHHHcCCCEEEEeCC
Confidence 8887777777887776543
No 84
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=79.34 E-value=13 Score=32.06 Aligned_cols=73 Identities=16% Similarity=0.113 Sum_probs=54.6
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHH-hCCCeEEEEEc---CCCChHHHHHHHHHHhhCC---ceEEEEecCCCC-chhhh
Q 032094 59 PIVGIIMESDLDLPVMNDAARTLSD-FGVPYEIKILP---PHQNCKEALSYALSAKERG---IKIIIVGDGVEA-HLSGT 130 (147)
Q Consensus 59 ~~V~IimGS~SDl~~~~~a~~~L~~-fGI~~ev~V~S---AHRtp~~l~~~~~~~~~~g---~~ViIAvAG~aA-hLpGv 130 (147)
.++.|+++..-.-...++..+.|+. .++. +.+.+ .+.+.+.+.++.+.+...+ .++|||+-|++. -+++.
T Consensus 24 ~k~livtd~~v~~~~~~~v~~~L~~~~~~~--~~~~~~~e~~k~~~~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ak~ 101 (344)
T cd08169 24 DQYFFISDSGVADLIAHYIAEYLSKILPVH--ILVIEGGEEYKTFETVTRILERAIALGANRRTAIVAVGGGATGDVAGF 101 (344)
T ss_pred CeEEEEECccHHHHHHHHHHHHHHhhcCce--EEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHH
Confidence 3688998887666788899999987 6664 34455 4778888888877666544 799999998854 47777
Q ss_pred hhc
Q 032094 131 CSC 133 (147)
Q Consensus 131 vAg 133 (147)
+|+
T Consensus 102 vA~ 104 (344)
T cd08169 102 VAS 104 (344)
T ss_pred HHH
Confidence 765
No 85
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=79.11 E-value=23 Score=27.60 Aligned_cols=62 Identities=6% Similarity=0.138 Sum_probs=39.7
Q ss_pred EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecC
Q 032094 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 122 (147)
Q Consensus 61 V~IimGS~SD---l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG 122 (147)
|+++....+| ..+.+.+.+.++++|..+++.+......+++..++++....++++-||....
T Consensus 2 Ig~v~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiIi~~~ 66 (271)
T cd06321 2 IGVSVGDLGNPFFVALAKGAEAAAKKLNPGVKVTVVSADYDLNKQVSQIDNFIAAKVDLILLNAV 66 (271)
T ss_pred eEEEecccCCHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 5666654444 2334455566677777777777666777777777776666667776666543
No 86
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=78.64 E-value=4.1 Score=31.34 Aligned_cols=55 Identities=15% Similarity=0.056 Sum_probs=37.3
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCc
Q 032094 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH 126 (147)
Q Consensus 60 ~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAh 126 (147)
.|.|+=.|. .+.+..+..|.+-| ..|...|+....+.++++ ..+++|++.|...-
T Consensus 30 ~v~VvGrs~---~vG~pla~lL~~~g----atV~~~~~~t~~l~~~v~-----~ADIVvsAtg~~~~ 84 (140)
T cd05212 30 KVLVVGRSG---IVGAPLQCLLQRDG----ATVYSCDWKTIQLQSKVH-----DADVVVVGSPKPEK 84 (140)
T ss_pred EEEEECCCc---hHHHHHHHHHHHCC----CEEEEeCCCCcCHHHHHh-----hCCEEEEecCCCCc
Confidence 455554443 46677777777655 566667876666777664 36999999998843
No 87
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=78.63 E-value=26 Score=27.09 Aligned_cols=59 Identities=17% Similarity=0.206 Sum_probs=40.7
Q ss_pred EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEec
Q 032094 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (147)
Q Consensus 61 V~IimGS~SD---l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvA 121 (147)
|+|++-+.+| ....+.+.+.++++|. .+-+.+....+++..++++...+++++.+|...
T Consensus 2 i~vv~p~~~~~~~~~~~~~i~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~ 63 (268)
T cd06273 2 IGAIVPTLDNAIFARVIQAFQETLAAHGY--TLLVASSGYDLDREYAQARKLLERGVDGLALIG 63 (268)
T ss_pred eEEEeCCCCCchHHHHHHHHHHHHHHCCC--EEEEecCCCCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 6677755444 3445667777888884 555567777888888888777777787777654
No 88
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=78.63 E-value=14 Score=30.49 Aligned_cols=67 Identities=10% Similarity=0.029 Sum_probs=52.4
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCC-hHHHHHHHHHHhhCCceEEEEecCCCCchhh
Q 032094 61 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQN-CKEALSYALSAKERGIKIIIVGDGVEAHLSG 129 (147)
Q Consensus 61 V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRt-p~~l~~~~~~~~~~g~~ViIAvAG~aAhLpG 129 (147)
|.| .-+.||...++++.+..++.|....+.+.-++|. |+.+.++++.+.+-|++. |..+-..+.+-+
T Consensus 102 iri-~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~-i~l~DT~G~~~P 169 (263)
T cd07943 102 VRV-ATHCTEADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGADC-VYVTDSAGAMLP 169 (263)
T ss_pred EEE-EechhhHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCE-EEEcCCCCCcCH
Confidence 444 4488999999999999999999888888667765 888889998888888885 466666555443
No 89
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=78.62 E-value=4.9 Score=34.39 Aligned_cols=71 Identities=14% Similarity=-0.059 Sum_probs=48.9
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEc-CCCChHHHHHHHHHHhhCCceEEEEecCCCCc-hhhhhhc
Q 032094 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP-PHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGTCSC 133 (147)
Q Consensus 60 ~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~S-AHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAh-LpGvvAg 133 (147)
++.||+|..+-....++..+.|+..++.+. +.+ . -+-+.+++.++.+...++++|||+=|++.. ++..+|.
T Consensus 25 ~~liv~d~~~~~~~~~~l~~~L~~~~~~~~--~~~~~-p~~~~v~~~~~~~~~~~~D~iIavGGGs~~D~aK~ia~ 97 (347)
T cd08172 25 RPLIVTGPRSWAAAKPYLPESLAAGEAFVL--RYDGE-CSEENIERLAAQAKENGADVIIGIGGGKVLDTAKAVAD 97 (347)
T ss_pred eEEEEECHHHHHHHHHHHHHHHhcCeEEEE--EeCCC-CCHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHH
Confidence 688898866644455666666655566432 332 3 778888888888888899999999998643 4444443
No 90
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=78.62 E-value=20 Score=25.16 Aligned_cols=63 Identities=24% Similarity=0.159 Sum_probs=51.1
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhCCCeE---------------------EEEEcCCCChHHHHHHHHHHhhCCceEEE
Q 032094 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYE---------------------IKILPPHQNCKEALSYALSAKERGIKIII 118 (147)
Q Consensus 60 ~V~IimGS~SDl~~~~~a~~~L~~fGI~~e---------------------v~V~SAHRtp~~l~~~~~~~~~~g~~ViI 118 (147)
+-.++.|.-+....++.+...|.++|.... +-+.|......++.+.++.++++|.+| |
T Consensus 6 ~~i~i~G~G~s~~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~is~sg~~~~~~~~~~~ak~~g~~v-i 84 (131)
T PF01380_consen 6 KRIYIYGSGSSYGVAQYAALKLQKLGRIVVISYEAGEFFHGPLENLDPDDLVIIISYSGETRELIELLRFAKERGAPV-I 84 (131)
T ss_dssp SEEEEEESTHHHHHHHHHHHHHHHHHSSEEEEEEHHHHHTTGGGGCSTTEEEEEEESSSTTHHHHHHHHHHHHTTSEE-E
T ss_pred CEEEEEEcchHHHHHHHHHHHHHHhcCcceeccchHHHhhhhcccccccceeEeeeccccchhhhhhhHHHHhcCCeE-E
Confidence 356788888999999999999988876411 778889999999999999999999988 5
Q ss_pred EecCC
Q 032094 119 VGDGV 123 (147)
Q Consensus 119 AvAG~ 123 (147)
++.+.
T Consensus 85 ~iT~~ 89 (131)
T PF01380_consen 85 LITSN 89 (131)
T ss_dssp EEESS
T ss_pred EEeCC
Confidence 55443
No 91
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=78.60 E-value=13 Score=33.47 Aligned_cols=62 Identities=11% Similarity=0.019 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHH--------------------------------------HhhCCc
Q 032094 73 VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALS--------------------------------------AKERGI 114 (147)
Q Consensus 73 ~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~--------------------------------------~~~~g~ 114 (147)
+...+.+++.++.=.|++...++|+..+++.+.++. ++...+
T Consensus 13 IG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~~~~~~l~~~~~v 92 (385)
T PRK05447 13 IGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQAREFRPKYVVVADEEAAKELKEALAAAGIEVLAGEEGLCELAALPEA 92 (385)
T ss_pred HHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhccCCceEEEChhHHHHHhcCCCC
Confidence 455566666655445677777777777776666543 111347
Q ss_pred eEEEEecCCCCchhhhhhcc
Q 032094 115 KIIIVGDGVEAHLSGTCSCC 134 (147)
Q Consensus 115 ~ViIAvAG~aAhLpGvvAg~ 134 (147)
++++.+.++.+||..+++++
T Consensus 93 D~Vv~Ai~G~aGl~ptl~Ai 112 (385)
T PRK05447 93 DVVVAAIVGAAGLLPTLAAI 112 (385)
T ss_pred CEEEEeCcCcccHHHHHHHH
Confidence 88888888899999888875
No 92
>PRK10586 putative oxidoreductase; Provisional
Probab=78.56 E-value=9.4 Score=33.34 Aligned_cols=63 Identities=10% Similarity=-0.036 Sum_probs=46.9
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCC
Q 032094 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (147)
Q Consensus 60 ~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aA 125 (147)
++.||+|..+-..........|++-|+.+ .+.+-+-+.+.+.++.+..+ .++++||++=|++.
T Consensus 36 ~~lvv~g~~~~~~~~~~~~~~l~~~~~~~--~~~~g~~~~~~v~~l~~~~~-~~~d~iiavGGGs~ 98 (362)
T PRK10586 36 RAVWIYGERAIAAAQPYLPPAFELPGAKH--ILFRGHCSESDVAQLAAASG-DDRQVVIGVGGGAL 98 (362)
T ss_pred eEEEEEChHHHHHHHHHHHHHHHHcCCeE--EEeCCCCCHHHHHHHHHHhc-cCCCEEEEecCcHH
Confidence 68899998776666567777899888754 34555666777777776554 47899999998764
No 93
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=78.43 E-value=8.3 Score=31.73 Aligned_cols=65 Identities=14% Similarity=0.266 Sum_probs=43.7
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCchhhhhhcc
Q 032094 66 ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGTCSCC 134 (147)
Q Consensus 66 GS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLpGvvAg~ 134 (147)
|+.......+++.+.|++.|+++++... -++. ...++++.+...+.+++| ++|+.+.|--++-++
T Consensus 13 g~~~~~~~~~~i~~~l~~~~~~~~~~~t-~~~~--~~~~~~~~~~~~~~d~iv-v~GGDGTl~~v~~~l 77 (293)
T TIGR00147 13 GKSNDNKPLREVIMLLREEGMEIHVRVT-WEKG--DAARYVEEARKFGVDTVI-AGGGDGTINEVVNAL 77 (293)
T ss_pred cchhhHHHHHHHHHHHHHCCCEEEEEEe-cCcc--cHHHHHHHHHhcCCCEEE-EECCCChHHHHHHHH
Confidence 5555667788899999999998887544 2331 223444444445677655 589999998888764
No 94
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=78.22 E-value=12 Score=29.80 Aligned_cols=49 Identities=20% Similarity=0.181 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHHHHhCCCeEEEEEcCCC---ChHHHHHHHHHHhhCCceEEE
Q 032094 70 DLPVMNDAARTLSDFGVPYEIKILPPHQ---NCKEALSYALSAKERGIKIII 118 (147)
Q Consensus 70 Dl~~~~~a~~~L~~fGI~~ev~V~SAHR---tp~~l~~~~~~~~~~g~~ViI 118 (147)
+++.+.++.+.+++.|+++.+.+..+.| +|+.+.++++.+.+-|++.|.
T Consensus 113 ~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~ 164 (265)
T cd03174 113 DLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEIS 164 (265)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 6888999999999999999999988885 788889999888888876544
No 95
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=78.21 E-value=2.4 Score=33.49 Aligned_cols=61 Identities=13% Similarity=0.061 Sum_probs=36.8
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCchhhh
Q 032094 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGT 130 (147)
Q Consensus 59 ~~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLpGv 130 (147)
++-+++.|... .+-+..+..|.+-| ..|...|...+.+.++.+ ..+++|+++|..+-+++-
T Consensus 36 Gk~v~VvGrs~--~VG~Pla~lL~~~~----atVt~~h~~T~~l~~~~~-----~ADIVVsa~G~~~~i~~~ 96 (160)
T PF02882_consen 36 GKKVVVVGRSN--IVGKPLAMLLLNKG----ATVTICHSKTKNLQEITR-----RADIVVSAVGKPNLIKAD 96 (160)
T ss_dssp T-EEEEE-TTT--TTHHHHHHHHHHTT-----EEEEE-TTSSSHHHHHT-----TSSEEEE-SSSTT-B-GG
T ss_pred CCEEEEECCcC--CCChHHHHHHHhCC----CeEEeccCCCCcccceee-----eccEEeeeeccccccccc
Confidence 34444555432 35566666777664 466678888888888875 379999999998876653
No 96
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=77.95 E-value=8.3 Score=37.31 Aligned_cols=65 Identities=17% Similarity=0.190 Sum_probs=49.8
Q ss_pred CeEEEEecCCC-CHHHHHHHHHHHH--HhCCCeEEEEEc---CCCChHHHHHHHHHHhhCCceEEEEecCCCC
Q 032094 59 PIVGIIMESDL-DLPVMNDAARTLS--DFGVPYEIKILP---PHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (147)
Q Consensus 59 ~~V~IimGS~S-Dl~~~~~a~~~L~--~fGI~~ev~V~S---AHRtp~~l~~~~~~~~~~g~~ViIAvAG~aA 125 (147)
.+|.||+|... +....++..+.|+ ..|+.+ .+.+ .+-+.+.+.+.++.+...++++|||+-|++.
T Consensus 481 ~~~lvVtd~~~~~~g~~~~v~~~L~~~~~~i~~--~~~~~v~~np~~~~v~~~~~~~~~~~~D~IIaiGGGSv 551 (862)
T PRK13805 481 KRAFIVTDRFMVELGYVDKVTDVLKKRENGVEY--EVFSEVEPDPTLSTVRKGAELMRSFKPDTIIALGGGSP 551 (862)
T ss_pred CEEEEEECcchhhcchHHHHHHHHhcccCCCeE--EEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchH
Confidence 37888887543 3447788888998 666654 4443 5788899999998888889999999999865
No 97
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=77.88 E-value=24 Score=27.12 Aligned_cols=60 Identities=10% Similarity=0.111 Sum_probs=41.8
Q ss_pred EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecC
Q 032094 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 122 (147)
Q Consensus 61 V~IimGS~SD---l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG 122 (147)
|+|++...++ ....+.+.+.++++|. ++.+...+..+++..++++.....+++.+|....
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~~dgii~~~~ 64 (259)
T cd01542 2 IGVIVPRLDSFSTSRTVKGILAALYENGY--QMLLMNTNFSIEKEIEALELLARQKVDGIILLAT 64 (259)
T ss_pred eEEEecCCccchHHHHHHHHHHHHHHCCC--EEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 6677654433 2345555666777874 5556667788998888888777788988888754
No 98
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=77.85 E-value=17 Score=29.37 Aligned_cols=92 Identities=10% Similarity=0.065 Sum_probs=54.5
Q ss_pred HHHhhcccccccccCCCcccccCCCCCCCCCCCeEEEEecCCCCH---HHHHHHHHHHHHhCCCeEEEEEcCCCChHHHH
Q 032094 27 GSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEAL 103 (147)
Q Consensus 27 ~~~k~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~SDl---~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~ 103 (147)
++-+++....++++......... .........|++++...+|. .+.+.+.+.+++.|. ++.+...+..++...
T Consensus 32 ~~tr~rV~~~a~elgY~pn~~a~--~l~~~~~~~Igvv~~~~~~~~~~~l~~gi~~~~~~~g~--~~~~~~~~~~~~~~~ 107 (328)
T PRK11303 32 DKTVEKVMAVVREHNYHPNAVAA--GLRAGRTRSIGLIIPDLENTSYARIAKYLERQARQRGY--QLLIACSDDQPDNEM 107 (328)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHH--HhhcCCCceEEEEeCCCCCchHHHHHHHHHHHHHHcCC--EEEEEeCCCCHHHHH
Confidence 35566666667666653110000 11222346799998654442 233455566677775 455566677788777
Q ss_pred HHHHHHhhCCceEEEEecC
Q 032094 104 SYALSAKERGIKIIIVGDG 122 (147)
Q Consensus 104 ~~~~~~~~~g~~ViIAvAG 122 (147)
++++.....+++-+|....
T Consensus 108 ~~~~~l~~~~vdgiIi~~~ 126 (328)
T PRK11303 108 RCAEHLLQRQVDALIVSTS 126 (328)
T ss_pred HHHHHHHHcCCCEEEEcCC
Confidence 8887776777888777543
No 99
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=77.77 E-value=3.1 Score=35.89 Aligned_cols=52 Identities=17% Similarity=0.257 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhCCCeE-------------------------EEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCch
Q 032094 73 VMNDAARTLSDFGVPYE-------------------------IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL 127 (147)
Q Consensus 73 ~~~~a~~~L~~fGI~~e-------------------------v~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhL 127 (147)
+...+.++|+.+|++++ .+|+..|+..+.+.++.++ .+++|+++|...-+
T Consensus 141 Tp~aii~lL~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T~dl~~~~k~-----ADIvIsAvGkp~~i 215 (282)
T PRK14180 141 TPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLKSHTTK-----ADILIVAVGKPNFI 215 (282)
T ss_pred CHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCCCCHHHHhhh-----cCEEEEccCCcCcC
Confidence 55667777888877643 5778888877778777653 69999999999876
Q ss_pred hh
Q 032094 128 SG 129 (147)
Q Consensus 128 pG 129 (147)
++
T Consensus 216 ~~ 217 (282)
T PRK14180 216 TA 217 (282)
T ss_pred CH
Confidence 64
No 100
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=77.48 E-value=30 Score=27.04 Aligned_cols=67 Identities=10% Similarity=0.091 Sum_probs=42.5
Q ss_pred EEEEecCCCC---HHHHHHHHHHHHHhC---CCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCch
Q 032094 61 VGIIMESDLD---LPVMNDAARTLSDFG---VPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL 127 (147)
Q Consensus 61 V~IimGS~SD---l~~~~~a~~~L~~fG---I~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhL 127 (147)
|+++..+.++ ..+.+.+.+.++++| ..+++.+......++...++++....++++.||....-...+
T Consensus 2 Ig~i~~~~~~~f~~~~~~gi~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vDgiii~~~~~~~~ 74 (274)
T cd06311 2 IGVSIPAADHGWTAGIVWHAQAAAKKLEAAYPDVEFILVTASNDTEQQNAQQDLLINRKIDALVILPFESAPL 74 (274)
T ss_pred eeeeccCCCCcHHHHHHHHHHHHHHHhhhhCCCeEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCCchhh
Confidence 4555554444 234455556666664 567788877777777777777777777788777765443333
No 101
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=77.07 E-value=7.2 Score=33.70 Aligned_cols=53 Identities=11% Similarity=0.136 Sum_probs=43.7
Q ss_pred CCeEEEEecCC-CCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHh
Q 032094 58 APIVGIIMESD-LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAK 110 (147)
Q Consensus 58 ~~~V~IimGS~-SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~ 110 (147)
+.++.|..|.+ ++.-+++...+.++++||.+++.-....-+.+++.+.++...
T Consensus 34 P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~s~~el~~~I~~lN 87 (284)
T PRK14177 34 PKLATILVGNNPASETYVSMKVKACHKVGMGSEMIRLKEQTTTEELLGVIDKLN 87 (284)
T ss_pred CeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35788888877 456667777899999999999999999989999999887663
No 102
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=76.67 E-value=3.7 Score=35.47 Aligned_cols=52 Identities=13% Similarity=0.171 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhCCCe-------------------------EEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCch
Q 032094 73 VMNDAARTLSDFGVPY-------------------------EIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL 127 (147)
Q Consensus 73 ~~~~a~~~L~~fGI~~-------------------------ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhL 127 (147)
+...+.++|+.+|+++ ...|...|...+.+.++.++ .+++|+++|...-+
T Consensus 142 Tp~avi~ll~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T~~l~~~~~~-----ADIvIsAvGk~~~i 216 (284)
T PRK14177 142 TPYGMVLLLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKTQNLPSIVRQ-----ADIIVGAVGKPEFI 216 (284)
T ss_pred CHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhh-----CCEEEEeCCCcCcc
Confidence 4566777888888865 36788889766777777653 69999999998876
Q ss_pred hh
Q 032094 128 SG 129 (147)
Q Consensus 128 pG 129 (147)
.+
T Consensus 217 ~~ 218 (284)
T PRK14177 217 KA 218 (284)
T ss_pred CH
Confidence 53
No 103
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=76.64 E-value=9.1 Score=32.61 Aligned_cols=66 Identities=12% Similarity=0.214 Sum_probs=52.8
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCchhhhhhccc
Q 032094 66 ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGTCSCCK 135 (147)
Q Consensus 66 GS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLpGvvAg~T 135 (147)
|-.......+++.+.|++.|..+++++.... ....++++++...+++.+||+ |+.+-+.-|+.++-
T Consensus 14 G~~~~~~~~~~~~~~l~~~g~~~~~~~t~~~---g~a~~~a~~a~~~~~D~via~-GGDGTv~evingl~ 79 (301)
T COG1597 14 GKGKAKKLLREVEELLEEAGHELSVRVTEEA---GDAIEIAREAAVEGYDTVIAA-GGDGTVNEVANGLA 79 (301)
T ss_pred cccchhhHHHHHHHHHHhcCCeEEEEEeecC---ccHHHHHHHHHhcCCCEEEEe-cCcchHHHHHHHHh
Confidence 4345667888999999999999999998655 788889988888888988865 77788877777653
No 104
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=76.11 E-value=21 Score=29.32 Aligned_cols=92 Identities=8% Similarity=-0.036 Sum_probs=56.5
Q ss_pred HHHhhcccccccccCCCcccccCCCCCCCCCCCeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHH
Q 032094 27 GSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEAL 103 (147)
Q Consensus 27 ~~~k~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~SD---l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~ 103 (147)
++.+++....++++......... .........|+++..+-+| ....+.+.+.+++.|. .+-+...+..+++..
T Consensus 30 ~~tr~rV~~~a~elgY~pn~~ar--~l~~~~~~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~ 105 (343)
T PRK10727 30 EASRLAVHSAMESLSYHPNANAR--ALAQQSTETVGLVVGDVSDPFFGAMVKAVEQVAYHTGN--FLLIGNGYHNEQKER 105 (343)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHH--hhhhCCCCeEEEEeCCCCcchHHHHHHHHHHHHHHcCC--EEEEEeCCCCHHHHH
Confidence 45566666666666553210000 1122234579999876544 2345566677788885 566666777888777
Q ss_pred HHHHHHhhCCceEEEEecC
Q 032094 104 SYALSAKERGIKIIIVGDG 122 (147)
Q Consensus 104 ~~~~~~~~~g~~ViIAvAG 122 (147)
++++....++++-+|....
T Consensus 106 ~~i~~l~~~~vdgiIi~~~ 124 (343)
T PRK10727 106 QAIEQLIRHRCAALVVHAK 124 (343)
T ss_pred HHHHHHHhcCCCEEEEecC
Confidence 8887777777887777654
No 105
>PRK13059 putative lipid kinase; Reviewed
Probab=75.95 E-value=9 Score=32.02 Aligned_cols=65 Identities=12% Similarity=0.113 Sum_probs=43.0
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCchhhhhhccc
Q 032094 66 ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGTCSCCK 135 (147)
Q Consensus 66 GS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLpGvvAg~T 135 (147)
|+..+....+++.+.|++.|+.+++....-+...+ .+.++...+.+++| ++|+.+.+--|+.++-
T Consensus 13 G~g~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~----~~~~~~~~~~d~vi-~~GGDGTv~evv~gl~ 77 (295)
T PRK13059 13 GENAIISELDKVIRIHQEKGYLVVPYRISLEYDLK----NAFKDIDESYKYIL-IAGGDGTVDNVVNAMK 77 (295)
T ss_pred cchhHHHHHHHHHHHHHHCCcEEEEEEccCcchHH----HHHHHhhcCCCEEE-EECCccHHHHHHHHHH
Confidence 55555667788889999999887754444332222 23333345667554 7899999998887764
No 106
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=75.91 E-value=8.5 Score=33.20 Aligned_cols=53 Identities=13% Similarity=0.160 Sum_probs=43.0
Q ss_pred CeEEEEecCCCC-HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhh
Q 032094 59 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE 111 (147)
Q Consensus 59 ~~V~IimGS~SD-l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~ 111 (147)
.++.|..|.+.| .-+.+...+.++++||.+++.-.+..-+.+++.+.++...+
T Consensus 34 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 87 (284)
T PRK14190 34 GLAVILVGDDPASHSYVRGKKKAAEKVGIYSELYEFPADITEEELLALIDRLNA 87 (284)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 467777887765 45556668899999999999999999999999999976633
No 107
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=75.44 E-value=32 Score=26.38 Aligned_cols=60 Identities=13% Similarity=0.187 Sum_probs=40.6
Q ss_pred EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecC
Q 032094 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 122 (147)
Q Consensus 61 V~IimGS~SD---l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG 122 (147)
|+++..+.+| ....+.+.+.++++|+ ++.+......++...++++.....+++-||..+.
T Consensus 2 igvi~~~~~~~~~~~~~~~i~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~~dgiii~~~ 64 (267)
T cd06283 2 IGVIVADITNPFSSLVLKGIEDVCRAHGY--QVLVCNSDNDPEKEKEYLESLLAYQVDGLIVNPT 64 (267)
T ss_pred EEEEecCCccccHHHHHHHHHHHHHHcCC--EEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEeCC
Confidence 5666665555 5566777788888885 4455555556777777777777777877766554
No 108
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=75.06 E-value=16 Score=24.75 Aligned_cols=55 Identities=24% Similarity=0.266 Sum_probs=37.8
Q ss_pred EEEEecCC---CCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEe
Q 032094 61 VGIIMESD---LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120 (147)
Q Consensus 61 V~IimGS~---SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAv 120 (147)
|+|+.=+. .-.+.+.+....|...|+..++.- -++++.+-.+++. ..|+..+|.+
T Consensus 2 v~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~--~~~~~~k~~~~a~---~~g~p~~iii 59 (94)
T PF03129_consen 2 VVIIPVGKKDEEIIEYAQELANKLRKAGIRVELDD--SDKSLGKQIKYAD---KLGIPFIIII 59 (94)
T ss_dssp EEEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEES--SSSTHHHHHHHHH---HTTESEEEEE
T ss_pred EEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEEC--CCCchhHHHHHHh---hcCCeEEEEE
Confidence 66666666 567888999999999998766655 5666666555543 4566555543
No 109
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=74.84 E-value=16 Score=31.76 Aligned_cols=63 Identities=10% Similarity=-0.116 Sum_probs=43.7
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhCCCeEEE-EEcCCCChHHHHHHHHHHhhC---CceEEEEecCCCC
Q 032094 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKER---GIKIIIVGDGVEA 125 (147)
Q Consensus 60 ~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~-V~SAHRtp~~l~~~~~~~~~~---g~~ViIAvAG~aA 125 (147)
.+.|+++. +-.. .+..+.|+..|+++.+. -+...=+.+.+++.++.++.. ++++|||+=|+|.
T Consensus 27 ~~lvvtd~-~~~~--~~v~~~L~~~g~~~~~f~~v~~nPt~~~v~~~~~~~~~~~~~~~D~IIaiGGGS~ 93 (347)
T cd08184 27 PAVFFVDD-VFQG--KDLISRLPVESEDMIIWVDATEEPKTDQIDALTAQVKSFDGKLPCAIVGIGGGST 93 (347)
T ss_pred eEEEEECc-chhh--hHHHHHHHhcCCcEEEEcCCCCCcCHHHHHHHHHHHHhhCCCCCCEEEEeCCcHH
Confidence 46666653 3232 56777788889886653 234566667788888777665 8999999999864
No 110
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=74.70 E-value=8.6 Score=30.81 Aligned_cols=67 Identities=18% Similarity=0.161 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEcCCCChHH-------HHHHHHHHhhCCceEEEEecCCCCchhhhhhccccCcceeec
Q 032094 71 LPVMNDAARTLSDFGVPYEIKILPPHQNCKE-------ALSYALSAKERGIKIIIVGDGVEAHLSGTCSCCKFSNTCYSC 143 (147)
Q Consensus 71 l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~-------l~~~~~~~~~~g~~ViIAvAG~aAhLpGvvAg~T~~~~~~~~ 143 (147)
.+.+++..+.|++ ..|+-|++.|=..+. ..++++..-+.|+++|| |.-.|.+--+--.-.+.+.||+
T Consensus 161 ~~~~~~~i~~lr~---~~D~vIv~~H~G~e~~~~p~~~~~~la~~l~~~G~D~Ii---G~H~Hv~q~~E~~~~~~I~YSl 234 (239)
T cd07381 161 LERIAADIAEAKK---KADIVIVSLHWGVEYSYYPTPEQRELARALIDAGADLVI---GHHPHVLQGIEIYKGKLIFYSL 234 (239)
T ss_pred HHHHHHHHHHHhh---cCCEEEEEecCcccCCCCCCHHHHHHHHHHHHCCCCEEE---cCCCCcCCCeEEECCEEEEEcC
Confidence 4445555555554 389999999986543 56677666667899998 6666654322112223366875
No 111
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=74.37 E-value=20 Score=29.07 Aligned_cols=58 Identities=14% Similarity=0.244 Sum_probs=40.2
Q ss_pred CCCeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCC-------------ChHHHHHHHHHHhhCCceEEEEecCC
Q 032094 57 DAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQ-------------NCKEALSYALSAKERGIKIIIVGDGV 123 (147)
Q Consensus 57 ~~~~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHR-------------tp~~l~~~~~~~~~~g~~ViIAvAG~ 123 (147)
+.+.|.|.+|+...- ++.+.|+.+. .+.+.|.+.+. +.+.+.+++.. .+++|+-+|-
T Consensus 191 ~~~~iLv~~gg~~~~----~~~~~l~~~~-~~~~~v~g~~~~~~~~~ni~~~~~~~~~~~~~m~~-----ad~vIs~~G~ 260 (318)
T PF13528_consen 191 DEPKILVYFGGGGPG----DLIEALKALP-DYQFIVFGPNAADPRPGNIHVRPFSTPDFAELMAA-----ADLVISKGGY 260 (318)
T ss_pred CCCEEEEEeCCCcHH----HHHHHHHhCC-CCeEEEEcCCcccccCCCEEEeecChHHHHHHHHh-----CCEEEECCCH
Confidence 446788888886554 6677788876 57777777665 23455555532 6999999886
Q ss_pred C
Q 032094 124 E 124 (147)
Q Consensus 124 a 124 (147)
+
T Consensus 261 ~ 261 (318)
T PF13528_consen 261 T 261 (318)
T ss_pred H
Confidence 5
No 112
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=74.35 E-value=18 Score=30.23 Aligned_cols=71 Identities=14% Similarity=0.128 Sum_probs=42.4
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEE--EEEcCCC------ChHHHHHHHHHHhhCCceEEEEecCCCCchhhh
Q 032094 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEI--KILPPHQ------NCKEALSYALSAKERGIKIIIVGDGVEAHLSGT 130 (147)
Q Consensus 59 ~~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev--~V~SAHR------tp~~l~~~~~~~~~~g~~ViIAvAG~aAhLpGv 130 (147)
....|++|..- +-..++++.|||+.++ .+-+ |- +..-+.++.+......++++++-.-....|.|.
T Consensus 30 ~~~~~~tg~h~-----~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~pDiv~~~gd~~~~la~a 103 (365)
T TIGR00236 30 DSYVIVTAQHR-----EMLDQVLDLFHLPPDYDLNIMS-PGQTLGEITSNMLEGLEELLLEEKPDIVLVQGDTTTTLAGA 103 (365)
T ss_pred CEEEEEeCCCH-----HHHHHHHHhcCCCCCeeeecCC-CCCCHHHHHHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHH
Confidence 35677888762 4455666678887554 4433 32 122233444444455678888885567778888
Q ss_pred hhccc
Q 032094 131 CSCCK 135 (147)
Q Consensus 131 vAg~T 135 (147)
+|+.-
T Consensus 104 ~aa~~ 108 (365)
T TIGR00236 104 LAAFY 108 (365)
T ss_pred HHHHH
Confidence 87643
No 113
>PRK08862 short chain dehydrogenase; Provisional
Probab=74.17 E-value=24 Score=27.94 Aligned_cols=27 Identities=0% Similarity=-0.125 Sum_probs=16.7
Q ss_pred CChHHHHHHHHHHhh--C-CceEEEEecCC
Q 032094 97 QNCKEALSYALSAKE--R-GIKIIIVGDGV 123 (147)
Q Consensus 97 Rtp~~l~~~~~~~~~--~-g~~ViIAvAG~ 123 (147)
..++.+.++++...+ . .++++|..||.
T Consensus 64 ~~~~~~~~~~~~~~~~~g~~iD~li~nag~ 93 (227)
T PRK08862 64 FSQESIRHLFDAIEQQFNRAPDVLVNNWTS 93 (227)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCEEEECCcc
Confidence 356666666654432 2 47888888874
No 114
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=74.02 E-value=39 Score=26.12 Aligned_cols=61 Identities=10% Similarity=0.162 Sum_probs=43.4
Q ss_pred EEEEecCCC---CHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCC
Q 032094 61 VGIIMESDL---DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV 123 (147)
Q Consensus 61 V~IimGS~S---Dl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~ 123 (147)
|+|+.-+.+ .....+.+.+.++++| |++.+......++...++++....++++.+|.....
T Consensus 2 i~vi~~~~~~~~~~~~~~gi~~~~~~~g--~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~ 65 (270)
T cd06296 2 IGLVFPDLDSPWASEVLRGVEEAAAAAG--YDVVLSESGRRTSPERQWVERLSARRTDGVILVTPE 65 (270)
T ss_pred eEEEECCCCCccHHHHHHHHHHHHHHcC--CeEEEecCCCchHHHHHHHHHHHHcCCCEEEEecCC
Confidence 566664433 3556667777888887 566777788888878788877777888888776554
No 115
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=73.94 E-value=21 Score=22.96 Aligned_cols=56 Identities=21% Similarity=0.246 Sum_probs=38.6
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEe
Q 032094 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120 (147)
Q Consensus 60 ~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAv 120 (147)
.|.|+.-+..+.+.+.+.+..|..-|+.+++.... +.++...++ +...|+..+|.+
T Consensus 3 ~v~i~~~~~~~~~~a~~i~~~Lr~~g~~v~~~~~~--~~~~~~~~~---a~~~~~~~~i~i 58 (91)
T cd00859 3 DVYVVPLGEGALSEALELAEQLRDAGIKAEIDYGG--RKLKKQFKY---ADRSGARFAVIL 58 (91)
T ss_pred cEEEEEcChHHHHHHHHHHHHHHHCCCEEEEecCC--CCHHHHHHH---HHHcCCCEEEEE
Confidence 47788877888888889999999999987765543 345554444 445676554444
No 116
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=73.57 E-value=14 Score=31.38 Aligned_cols=69 Identities=12% Similarity=0.097 Sum_probs=44.1
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEc--CCCChHHHHHHHHHHhhCCceEEEEecCCC-Cchhhhhhcc
Q 032094 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP--PHQNCKEALSYALSAKERGIKIIIVGDGVE-AHLSGTCSCC 134 (147)
Q Consensus 59 ~~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~S--AHRtp~~l~~~~~~~~~~g~~ViIAvAG~a-AhLpGvvAg~ 134 (147)
.++.||+|... .+++.+.|++.++ .++.+.. -+-+.+++.+.++..+ +.++|||+-|++ .-+++++|.+
T Consensus 26 ~r~livtd~~~----~~~~~~~L~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~--~~d~iIaiGGGsv~D~aK~vA~~ 97 (331)
T cd08174 26 GRVAVVSGPGV----GEQVAESLKTSFS-AEVEAVEEVSNSDAEEIGARARSIP--NVDAVVGIGGGKVIDVAKYAAFL 97 (331)
T ss_pred CceEEEECCcH----HHHHHHHHHhccC-ceEEEecCCCccCHHHHHHHHHhcc--CCCEEEEeCCcHHHHHHHHHHhh
Confidence 36899998765 7788888888777 3444432 1233444444444332 479999998875 4466777665
No 117
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=73.38 E-value=31 Score=26.91 Aligned_cols=62 Identities=16% Similarity=0.259 Sum_probs=36.3
Q ss_pred EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecC
Q 032094 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 122 (147)
Q Consensus 61 V~IimGS~SD---l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG 122 (147)
|+++.-+.+| ...++.+.+.+++.|+...+......+.++...+.++....++++.+|....
T Consensus 2 igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 66 (275)
T cd06320 2 YGVVLKTLSNEFWRSLKEGYENEAKKLGVSVDIQAAPSEGDQQGQLSIAENMINKGYKGLLFSPI 66 (275)
T ss_pred eeEEEecCCCHHHHHHHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHhCCCEEEECCC
Confidence 5666655444 2233455566677776544433334567776667776666667777766543
No 118
>PRK12361 hypothetical protein; Provisional
Probab=73.32 E-value=9.1 Score=34.84 Aligned_cols=66 Identities=18% Similarity=0.172 Sum_probs=46.3
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCchhhhhhcccc
Q 032094 66 ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGTCSCCKF 136 (147)
Q Consensus 66 GS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLpGvvAg~T~ 136 (147)
|+.......+++.+.|++. +++++..+.. .+...++++++...+.+++| ++|+.+.|..|+.++..
T Consensus 254 G~g~~~~~~~~i~~~L~~~-~~~~v~~t~~---~~~a~~la~~~~~~~~d~Vi-v~GGDGTl~ev~~~l~~ 319 (547)
T PRK12361 254 GGGKWQEYGEQIQRELKAY-FDLTVKLTTP---EISAEALAKQARKAGADIVI-ACGGDGTVTEVASELVN 319 (547)
T ss_pred CCCcHHHHHHHHHHHHhcC-CceEEEECCC---CccHHHHHHHHHhcCCCEEE-EECCCcHHHHHHHHHhc
Confidence 6655667888888888874 5555554432 34456777666666777766 58999999999987643
No 119
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=73.20 E-value=5.2 Score=34.73 Aligned_cols=52 Identities=19% Similarity=0.178 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhCCCe-----------------------------EEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCC
Q 032094 73 VMNDAARTLSDFGVPY-----------------------------EIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV 123 (147)
Q Consensus 73 ~~~~a~~~L~~fGI~~-----------------------------ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~ 123 (147)
+...+.++|+.+|+++ .-+|...|+....+.++.++ .+++|+++|.
T Consensus 144 Tp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T~~l~~~~~~-----ADIvVsAvGk 218 (297)
T PRK14168 144 TPAGIQEMLVRSGVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRSKNLARHCQR-----ADILIVAAGV 218 (297)
T ss_pred CHHHHHHHHHHhCCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCCcCHHHHHhh-----CCEEEEecCC
Confidence 5567778888888774 24677889877778777753 6999999999
Q ss_pred CCchhh
Q 032094 124 EAHLSG 129 (147)
Q Consensus 124 aAhLpG 129 (147)
..-+.+
T Consensus 219 p~~i~~ 224 (297)
T PRK14168 219 PNLVKP 224 (297)
T ss_pred cCccCH
Confidence 887654
No 120
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=73.13 E-value=4.9 Score=34.87 Aligned_cols=52 Identities=8% Similarity=0.150 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhCCCeE-------------------------EEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCch
Q 032094 73 VMNDAARTLSDFGVPYE-------------------------IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL 127 (147)
Q Consensus 73 ~~~~a~~~L~~fGI~~e-------------------------v~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhL 127 (147)
+...+.++|+.+||+++ .+|...|.....+.++.++ ++++|+++|...-+
T Consensus 143 Tp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T~~l~~~~~~-----ADIvVsAvGkp~~i 217 (294)
T PRK14187 143 TPKGCLYLIKTITRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSATRDLADYCSK-----ADILVAAVGIPNFV 217 (294)
T ss_pred CHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCCCCHHHHHhh-----CCEEEEccCCcCcc
Confidence 56777888999988752 5788889887778887754 69999999999876
Q ss_pred hh
Q 032094 128 SG 129 (147)
Q Consensus 128 pG 129 (147)
.+
T Consensus 218 ~~ 219 (294)
T PRK14187 218 KY 219 (294)
T ss_pred CH
Confidence 54
No 121
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=73.03 E-value=22 Score=29.00 Aligned_cols=90 Identities=9% Similarity=0.001 Sum_probs=55.3
Q ss_pred HHHhhcccccccccCCCcccccCCCCCCCCCCCeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHH
Q 032094 27 GSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEAL 103 (147)
Q Consensus 27 ~~~k~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~SD---l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~ 103 (147)
++.+++....++++......... .........|+++....++ ..+.+.+.+.+++.| |++-+......++...
T Consensus 34 ~~tr~rV~~~a~elgY~pn~~a~--~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g--~~~~~~~~~~~~~~~~ 109 (331)
T PRK14987 34 VALRGKIAAALDELGYIPNRAPD--ILSNATSRAIGVLLPSLTNQVFAEVLRGIESVTDAHG--YQTMLAHYGYKPEMEQ 109 (331)
T ss_pred HHHHHHHHHHHHHhCCCccHHHH--HHhhCCCCEEEEEeCCCcchhHHHHHHHHHHHHHHCC--CEEEEecCCCCHHHHH
Confidence 35677777777777653100000 1122233579999865554 344556777778888 4555666666777777
Q ss_pred HHHHHHhhCCceEEEEe
Q 032094 104 SYALSAKERGIKIIIVG 120 (147)
Q Consensus 104 ~~~~~~~~~g~~ViIAv 120 (147)
++++....++++-+|..
T Consensus 110 ~~~~~~~~~~vdgiI~~ 126 (331)
T PRK14987 110 ERLESMLSWNIDGLILT 126 (331)
T ss_pred HHHHHHHhcCCCEEEEc
Confidence 77776667778888765
No 122
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=72.88 E-value=19 Score=23.58 Aligned_cols=50 Identities=18% Similarity=0.060 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCC-ceEEEE
Q 032094 68 DLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERG-IKIIIV 119 (147)
Q Consensus 68 ~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g-~~ViIA 119 (147)
.+.=|.|.+|...|++.||+|+..=+. ..|+...++.+...... +.|||.
T Consensus 6 ~~~Cp~C~~a~~~L~~~~i~~~~~di~--~~~~~~~~~~~~~g~~~vP~i~i~ 56 (79)
T TIGR02181 6 KPYCPYCTRAKALLSSKGVTFTEIRVD--GDPALRDEMMQRSGRRTVPQIFIG 56 (79)
T ss_pred cCCChhHHHHHHHHHHcCCCcEEEEec--CCHHHHHHHHHHhCCCCcCEEEEC
Confidence 456789999999999999998866543 45666667665333222 355553
No 123
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=72.84 E-value=4.9 Score=34.88 Aligned_cols=52 Identities=12% Similarity=0.161 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhCCCeE-------------------------EEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCch
Q 032094 73 VMNDAARTLSDFGVPYE-------------------------IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL 127 (147)
Q Consensus 73 ~~~~a~~~L~~fGI~~e-------------------------v~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhL 127 (147)
+...+.++|+.+||+.+ .+|...|.....+.++.++ .+++|+++|...-+
T Consensus 141 Tp~aii~lL~~~~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T~~l~~~~~~-----ADIvIsAvGkp~~i 215 (297)
T PRK14186 141 TPAGVMRLLRSQQIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRTQDLASITRE-----ADILVAAAGRPNLI 215 (297)
T ss_pred CHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhh-----CCEEEEccCCcCcc
Confidence 45566667777776532 5677778887778888754 69999999998766
Q ss_pred hh
Q 032094 128 SG 129 (147)
Q Consensus 128 pG 129 (147)
.+
T Consensus 216 ~~ 217 (297)
T PRK14186 216 GA 217 (297)
T ss_pred CH
Confidence 53
No 124
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=72.84 E-value=41 Score=26.85 Aligned_cols=62 Identities=10% Similarity=0.266 Sum_probs=42.9
Q ss_pred EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCC
Q 032094 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE 124 (147)
Q Consensus 61 V~IimGS~SD---l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~a 124 (147)
|+++....+| ....+.+.+.++++|+ ++.+......+++..++++.....+++.||..+.-.
T Consensus 2 I~vi~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~ 66 (288)
T cd01538 2 IGLSLPTKTEERWIRDRPNFEAALKELGA--EVIVQNANGDPAKQISQIENMIAKGVDVLVIAPVDG 66 (288)
T ss_pred eEEEEeCCCcHHHHHHHHHHHHHHHHcCC--EEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCCh
Confidence 6777765555 2334566666778775 555666777888888888777778898888776443
No 125
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=72.75 E-value=5.1 Score=34.48 Aligned_cols=35 Identities=14% Similarity=0.155 Sum_probs=27.2
Q ss_pred EEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCchhh
Q 032094 90 IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG 129 (147)
Q Consensus 90 v~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLpG 129 (147)
.+|...|+....+.++.++ .+++|+++|...-+.+
T Consensus 183 AtVt~chs~T~~l~~~~~~-----ADIvIsAvGkp~~i~~ 217 (278)
T PRK14172 183 ATVTICHSKTKNLKEVCKK-----ADILVVAIGRPKFIDE 217 (278)
T ss_pred CEEEEeCCCCCCHHHHHhh-----CCEEEEcCCCcCccCH
Confidence 5677888777778777754 6999999999887653
No 126
>PRK13057 putative lipid kinase; Reviewed
Probab=72.43 E-value=13 Score=30.82 Aligned_cols=59 Identities=12% Similarity=0.155 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCchhhhhhccc
Q 032094 72 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGTCSCCK 135 (147)
Q Consensus 72 ~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLpGvvAg~T 135 (147)
...+++.+.|++.|+++++... +.++...++++.. .++.++|| ++|+.+.+--|+.++-
T Consensus 13 ~~~~~i~~~l~~~g~~~~~~~t---~~~~~a~~~~~~~-~~~~d~ii-v~GGDGTv~~v~~~l~ 71 (287)
T PRK13057 13 AALAAARAALEAAGLELVEPPA---EDPDDLSEVIEAY-ADGVDLVI-VGGGDGTLNAAAPALV 71 (287)
T ss_pred hhHHHHHHHHHHcCCeEEEEec---CCHHHHHHHHHHH-HcCCCEEE-EECchHHHHHHHHHHh
Confidence 3567888899999998766544 5566777777653 45567655 7899999998887754
No 127
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=71.99 E-value=41 Score=26.12 Aligned_cols=59 Identities=14% Similarity=0.178 Sum_probs=40.2
Q ss_pred EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEec
Q 032094 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (147)
Q Consensus 61 V~IimGS~SD---l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvA 121 (147)
|+++....+| ....+.+.+.++++| |++-+...+..++...++++....++++-+|...
T Consensus 2 Ig~i~p~~~~~~~~~~~~~i~~~~~~~g--~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~ 63 (263)
T cd06280 2 VGLIVADIRNPFFTAVSRAVEDAAYRAG--LRVILCNTDEDPEKEAMYLELMEEERVTGVIFAP 63 (263)
T ss_pred EEEEecccccccHHHHHHHHHHHHHHCC--CEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeC
Confidence 5666654443 334556667788888 4566667778888887887777777787777654
No 128
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=71.95 E-value=5 Score=35.98 Aligned_cols=52 Identities=17% Similarity=0.199 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhCCCeE-------------------------EEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCch
Q 032094 73 VMNDAARTLSDFGVPYE-------------------------IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL 127 (147)
Q Consensus 73 ~~~~a~~~L~~fGI~~e-------------------------v~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhL 127 (147)
+...+.++|+.+||+.+ -+|...|.....+.++.++ ++|+|+++|...-+
T Consensus 214 Tp~avielL~~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T~nl~~~~r~-----ADIVIsAvGkp~~i 288 (364)
T PLN02616 214 TPKGCIELLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRE-----ADIIISAVGQPNMV 288 (364)
T ss_pred CHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCCCCHHHHHhh-----CCEEEEcCCCcCcC
Confidence 45668889999998754 5677789888888888754 69999999998876
Q ss_pred hh
Q 032094 128 SG 129 (147)
Q Consensus 128 pG 129 (147)
.+
T Consensus 289 ~~ 290 (364)
T PLN02616 289 RG 290 (364)
T ss_pred CH
Confidence 54
No 129
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=71.94 E-value=16 Score=24.55 Aligned_cols=57 Identities=19% Similarity=0.043 Sum_probs=38.4
Q ss_pred eEEEEecCC---CCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEec
Q 032094 60 IVGIIMESD---LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (147)
Q Consensus 60 ~V~IimGS~---SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvA 121 (147)
.|+|+.-+. .+.+.+.+.+..|+..|+.+++... -+.+....++ +...|+..+|.+-
T Consensus 3 qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~~--~~~l~k~i~~---a~~~g~~~~iiiG 62 (94)
T cd00861 3 DVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDR--NERPGVKFAD---ADLIGIPYRIVVG 62 (94)
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEECC--CCCcccchhH---HHhcCCCEEEEEC
Confidence 588888776 4677888888888888988877532 3455555444 4466777555553
No 130
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=71.73 E-value=33 Score=24.26 Aligned_cols=67 Identities=21% Similarity=0.249 Sum_probs=47.7
Q ss_pred EEecCCCCHHHHHHHHHHHHHhCCCe--------------------EEEEEcCCCChHHHHHHHHHHhhCCceEEEEecC
Q 032094 63 IIMESDLDLPVMNDAARTLSDFGVPY--------------------EIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 122 (147)
Q Consensus 63 IimGS~SDl~~~~~a~~~L~~fGI~~--------------------ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG 122 (147)
.+.|.-+-...++.....|..+|.+. -+-++|..+..+++.+.++.++++|++||--...
T Consensus 4 ~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~ 83 (128)
T cd05014 4 VVTGVGKSGHIARKIAATLSSTGTPAFFLHPTEALHGDLGMVTPGDVVIAISNSGETDELLNLLPHLKRRGAPIIAITGN 83 (128)
T ss_pred EEEeCcHhHHHHHHHHHHhhcCCCceEEcccchhhccccCcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 34444455566666666666666542 1667788888999999999999999988777766
Q ss_pred CCCchhh
Q 032094 123 VEAHLSG 129 (147)
Q Consensus 123 ~aAhLpG 129 (147)
..+-|..
T Consensus 84 ~~s~la~ 90 (128)
T cd05014 84 PNSTLAK 90 (128)
T ss_pred CCCchhh
Confidence 6666665
No 131
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=71.50 E-value=15 Score=30.79 Aligned_cols=57 Identities=14% Similarity=0.103 Sum_probs=41.3
Q ss_pred CHHHHHHHHHHHHHhCCCeEEEEEc-------CCCChHHHHHHHHHHhhCCceEEEEecCCCCc
Q 032094 70 DLPVMNDAARTLSDFGVPYEIKILP-------PHQNCKEALSYALSAKERGIKIIIVGDGVEAH 126 (147)
Q Consensus 70 Dl~~~~~a~~~L~~fGI~~ev~V~S-------AHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAh 126 (147)
+.+..+++.+.|+.+|....+.=.- +.-.-+|.+++.+...+..++.|+++-|+-+.
T Consensus 12 ~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~a~s~~~Ra~dL~~a~~d~~i~aI~~~rGG~ga 75 (282)
T cd07025 12 EEERLERAIARLESLGLEVVVGPHVLARDGYLAGTDEERAADLNAAFADPEIKAIWCARGGYGA 75 (282)
T ss_pred cHHHHHHHHHHHHhCCCEEEeccchhhhcCccCCCHHHHHHHHHHHhhCCCCCEEEEcCCcCCH
Confidence 3389999999999998864433221 22234667777777778889999999998664
No 132
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=71.27 E-value=45 Score=25.91 Aligned_cols=65 Identities=9% Similarity=0.212 Sum_probs=39.7
Q ss_pred EEEEecCCCCH---HHHHHHHHHHHHh---CCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCC
Q 032094 61 VGIIMESDLDL---PVMNDAARTLSDF---GVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (147)
Q Consensus 61 V~IimGS~SDl---~~~~~a~~~L~~f---GI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aA 125 (147)
|+++....+|. ...+.+.+.++++ |..+++.+....=.++...+.++....++++.||..+....
T Consensus 2 Ig~i~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~l~i~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~ 72 (272)
T cd06300 2 IGLSNSYAGNTWRAQMLDEFKAQAKELKKAGLISEFIVTSADGDVAQQIADIRNLIAQGVDAIIINPASPT 72 (272)
T ss_pred eEEeccccCChHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCChh
Confidence 55555444431 2344555666667 76667777655556777777776666667777777665433
No 133
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=71.20 E-value=42 Score=25.81 Aligned_cols=59 Identities=12% Similarity=0.254 Sum_probs=40.8
Q ss_pred EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEec
Q 032094 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (147)
Q Consensus 61 V~IimGS~SD---l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvA 121 (147)
|++++-+.++ ..+.+.+.+.++++|. ++.+...+..+++..+.++.....+++.+|...
T Consensus 2 i~~i~~~~~~~~~~~i~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~ 63 (260)
T cd06286 2 IGVVLPYINHPYFSQLVDGIEKAALKHGY--KVVLLQTNYDKEKELEYLELLKTKQVDGLILCS 63 (260)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHHHHcCC--EEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeC
Confidence 5666654333 4555677777888875 555566688888888888777777788666654
No 134
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=70.76 E-value=27 Score=28.69 Aligned_cols=73 Identities=12% Similarity=0.080 Sum_probs=42.2
Q ss_pred eEEEEecCCCCHH-----HHHHHHHHHHHhCCCeEEEEEcCCC-----ChHHHHHHHH-HHhhCCceEEEEec----CCC
Q 032094 60 IVGIIMESDLDLP-----VMNDAARTLSDFGVPYEIKILPPHQ-----NCKEALSYAL-SAKERGIKIIIVGD----GVE 124 (147)
Q Consensus 60 ~V~IimGS~SDl~-----~~~~a~~~L~~fGI~~ev~V~SAHR-----tp~~l~~~~~-~~~~~g~~ViIAvA----G~a 124 (147)
+|+|++|+.|+.- ....+.+.|++.|.... ++.... .++....+.. ......+++++-.+ |..
T Consensus 1 ~~~~~~gg~s~e~~~s~~s~~~i~~al~~~g~~v~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~g~~~~~ 78 (315)
T TIGR01205 1 RVAVLFGGKSAEHEISLVSAAAVLKALRDLGYDVY--PVDIDKMGSWTYKDLPQLILELGALLEGIDVVFPVLHGRYGED 78 (315)
T ss_pred CEEEEeCCCCCCeeeeHHHHHHHHHHHhhcCCEEE--EEeecCCccccccchHHHHhhccccCCCCCEEEEecCCCCCCC
Confidence 5999999999754 56778899999887643 333333 1122222221 11124578887765 334
Q ss_pred Cchhhhhhcc
Q 032094 125 AHLSGTCSCC 134 (147)
Q Consensus 125 AhLpGvvAg~ 134 (147)
+++++++..+
T Consensus 79 ~~~~~~le~~ 88 (315)
T TIGR01205 79 GTIQGLLELM 88 (315)
T ss_pred cHHHHHHHHc
Confidence 5666665543
No 135
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=70.74 E-value=14 Score=31.89 Aligned_cols=52 Identities=13% Similarity=0.191 Sum_probs=43.0
Q ss_pred CeEEEEecCCCCHH-HHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHh
Q 032094 59 PIVGIIMESDLDLP-VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAK 110 (147)
Q Consensus 59 ~~V~IimGS~SDl~-~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~ 110 (147)
.++.|+.|.+.+-. +++.-.+.++++||.+++.-.+..=+.+++.+.++...
T Consensus 34 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN 86 (278)
T PRK14172 34 KIASILVGNDGGSIYYMNNQEKVANSLGIDFKKIKLDESISEEDLINEIEELN 86 (278)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 47788888776655 56667889999999999999999999999999887663
No 136
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=70.61 E-value=27 Score=25.34 Aligned_cols=57 Identities=12% Similarity=0.133 Sum_probs=39.2
Q ss_pred CeEEEEecC--CCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEec
Q 032094 59 PIVGIIMES--DLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (147)
Q Consensus 59 ~~V~IimGS--~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvA 121 (147)
..|.|+.-+ +.+...+.+.+..|+..|+.+++... |.+....+++ ...|+..+|-+.
T Consensus 27 ~~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~d~~---~sl~kqlk~A---~k~g~~~~iiiG 85 (121)
T cd00858 27 IKVAVLPLVKRDELVEIAKEISEELRELGFSVKYDDS---GSIGRRYARQ---DEIGTPFCVTVD 85 (121)
T ss_pred cEEEEEecCCcHHHHHHHHHHHHHHHHCCCEEEEeCC---CCHHHHHHHh---HhcCCCEEEEEC
Confidence 457777766 56677888888888888998887652 6666666555 456776555443
No 137
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=70.42 E-value=24 Score=28.07 Aligned_cols=89 Identities=10% Similarity=0.034 Sum_probs=52.4
Q ss_pred HHhhcccccccccCCCcccccCCCCCCCCCCCeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHH
Q 032094 28 SATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALS 104 (147)
Q Consensus 28 ~~k~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~SD---l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~ 104 (147)
+-+++...+++++...-..... .....+...|+++.-+.++ ....+.+.+.++++|+. +.+......++.-.+
T Consensus 7 ~Tr~rV~~~a~elgY~pn~~a~--~l~~~~~~~ig~v~~~~~~~~~~~~~~gi~~~~~~~g~~--~~~~~~~~~~~~~~~ 82 (309)
T PRK11041 7 ATRQRVEQAVLEVGYSPQSLGR--NLKRNESRTILVIVPDICDPFFSEIIRGIEVTAAEHGYL--VLIGDCAHQNQQEKT 82 (309)
T ss_pred HHHHHHHHHHHHHCCCcCHHHH--HhhcCCCcEEEEEeCCCcCccHHHHHHHHHHHHHHCCCE--EEEEeCCCChHHHHH
Confidence 3455555666666543211011 1223344689988765433 44556788888889854 444445556666667
Q ss_pred HHHHHhhCCceEEEEe
Q 032094 105 YALSAKERGIKIIIVG 120 (147)
Q Consensus 105 ~~~~~~~~g~~ViIAv 120 (147)
+++....++++-||..
T Consensus 83 ~i~~l~~~~vDgiIi~ 98 (309)
T PRK11041 83 FVNLIITKQIDGMLLL 98 (309)
T ss_pred HHHHHHHcCCCEEEEe
Confidence 7777667778766664
No 138
>PRK05867 short chain dehydrogenase; Provisional
Probab=70.35 E-value=37 Score=26.57 Aligned_cols=42 Identities=10% Similarity=0.054 Sum_probs=27.4
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHH
Q 032094 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYA 106 (147)
Q Consensus 59 ~~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~ 106 (147)
+++++|+|+++ .+...+++.|-+.|. +|+-..|.+++++++.
T Consensus 9 ~k~vlVtGas~--gIG~~ia~~l~~~G~----~V~~~~r~~~~~~~~~ 50 (253)
T PRK05867 9 GKRALITGAST--GIGKRVALAYVEAGA----QVAIAARHLDALEKLA 50 (253)
T ss_pred CCEEEEECCCc--hHHHHHHHHHHHCCC----EEEEEcCCHHHHHHHH
Confidence 47889999887 456677777777775 2333456666555544
No 139
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=70.29 E-value=46 Score=25.88 Aligned_cols=61 Identities=15% Similarity=0.196 Sum_probs=42.7
Q ss_pred EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCC
Q 032094 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV 123 (147)
Q Consensus 61 V~IimGS~SD---l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~ 123 (147)
|+|++.+..| ..+.+.+.+.++++|+.. -+...-..++...+.++..-..+++-||...+.
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~~g~~~--~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~ 65 (273)
T cd01541 2 IGVITTYISDYIFPSIIRGIESVLSEKGYSL--LLASTNNDPERERKCLENMLSQGIDGLIIEPTK 65 (273)
T ss_pred eEEEeCCccchhHHHHHHHHHHHHHHcCCEE--EEEeCCCCHHHHHHHHHHHHHcCCCEEEEeccc
Confidence 6677765444 356667778888888654 455556778877787777777889888876554
No 140
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=70.28 E-value=45 Score=25.64 Aligned_cols=60 Identities=13% Similarity=0.164 Sum_probs=40.3
Q ss_pred EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecC
Q 032094 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 122 (147)
Q Consensus 61 V~IimGS~SD---l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG 122 (147)
|+++..+..| ..+.+.+.+.+++.|. ++.+...+..++...++++.....+++.+|..+.
T Consensus 2 i~vi~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 64 (268)
T cd06298 2 VGVIIPDITNSYFAELARGIDDIATMYKY--NIILSNSDNDKEKELKVLNNLLAKQVDGIIFMGG 64 (268)
T ss_pred EEEEECCCcchHHHHHHHHHHHHHHHcCC--eEEEEeCCCCHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 5666655443 3344556667777765 5556667888988888887766677887776543
No 141
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=70.27 E-value=5.8 Score=34.49 Aligned_cols=51 Identities=18% Similarity=0.247 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhCCCeE-------------------------EEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCch
Q 032094 73 VMNDAARTLSDFGVPYE-------------------------IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL 127 (147)
Q Consensus 73 ~~~~a~~~L~~fGI~~e-------------------------v~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhL 127 (147)
+...+.++|+.+||+++ .+|...|.....+.++.++ .+++|+++|...-+
T Consensus 150 Tp~avi~lL~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T~nl~~~~~~-----ADIvv~AvGk~~~i 224 (299)
T PLN02516 150 TPKGCLELLSRSGIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRTPDPESIVRE-----ADIVIAAAGQAMMI 224 (299)
T ss_pred CHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhh-----CCEEEEcCCCcCcc
Confidence 45667778888888643 5677778887778887753 69999999997544
Q ss_pred h
Q 032094 128 S 128 (147)
Q Consensus 128 p 128 (147)
.
T Consensus 225 ~ 225 (299)
T PLN02516 225 K 225 (299)
T ss_pred C
Confidence 3
No 142
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=70.03 E-value=12 Score=32.48 Aligned_cols=52 Identities=12% Similarity=0.118 Sum_probs=42.0
Q ss_pred CeEEEEecCCC-CHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHh
Q 032094 59 PIVGIIMESDL-DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAK 110 (147)
Q Consensus 59 ~~V~IimGS~S-Dl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~ 110 (147)
.++.|..|.+. +.-+++...+.++++||.+++...+..-+-+++.+.++...
T Consensus 33 ~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN 85 (297)
T PRK14167 33 GLATVLMSDDPASETYVSMKQRDCEEVGIEAIDVEIDPDAPAEELYDTIDELN 85 (297)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 46677777554 45567777889999999999999999999999999887653
No 143
>PF02006 DUF137: Protein of unknown function DUF137; InterPro: IPR002855 The archaeal proteins in this family have no known function.
Probab=69.92 E-value=16 Score=29.91 Aligned_cols=57 Identities=11% Similarity=0.098 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecC-CCCchhhhhh
Q 032094 74 MNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG-VEAHLSGTCS 132 (147)
Q Consensus 74 ~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG-~aAhLpGvvA 132 (147)
.+++.+.-+..|.+.||.. .|||.++...+.+..++.|.+.+.+... .+..+||.=.
T Consensus 20 p~eiveLa~~~~A~iEVNL--FyRT~eR~~~I~~~L~~~Ga~~vlG~~~d~~~~ip~L~~ 77 (178)
T PF02006_consen 20 PEEIVELAKATGAKIEVNL--FYRTEERVEKIAELLREHGAEEVLGVNPDASERIPGLDH 77 (178)
T ss_pred hHHHHHHHHHhCCCEEEEc--ccCCHHHHHHHHHHHHHcCCCEeeccCCcccccCCCCCC
Confidence 4567777788888777665 7999999999999999999986665522 2456777543
No 144
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=69.59 E-value=49 Score=25.68 Aligned_cols=59 Identities=8% Similarity=0.176 Sum_probs=40.5
Q ss_pred EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEec
Q 032094 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (147)
Q Consensus 61 V~IimGS~SD---l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvA 121 (147)
|+++..+.++ ....+.+.+.++++|. ++.+......++...++++.....+++-||...
T Consensus 2 Ig~i~~~~~~~~~~~~~~gi~~~~~~~gy--~v~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~ 63 (269)
T cd06293 2 IGLVVPDIANPFFAELADAVEEEADARGL--SLVLCATRNRPERELTYLRWLDTNHVDGLIFVT 63 (269)
T ss_pred EEEEeCCCCCCcHHHHHHHHHHHHHHCCC--EEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeC
Confidence 6777755433 3566777788888885 444554445777778888887788888777753
No 145
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=69.58 E-value=49 Score=25.51 Aligned_cols=60 Identities=10% Similarity=0.172 Sum_probs=40.9
Q ss_pred EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecC
Q 032094 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 122 (147)
Q Consensus 61 V~IimGS~SD---l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG 122 (147)
|+++..+.++ ....+.+.+.++++|. ++.+......+++..++++....++++.||....
T Consensus 2 igvi~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 64 (269)
T cd06275 2 IGMLVTTSTNPFFAEVVRGVEQYCYRQGY--NLILCNTEGDPERQRSYLRMLAQKRVDGLLVMCS 64 (269)
T ss_pred EEEEeCCCCcchHHHHHHHHHHHHHHcCC--EEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecC
Confidence 6777765433 2334456667788885 5556667788988888888777778887776543
No 146
>PRK10329 glutaredoxin-like protein; Provisional
Probab=69.53 E-value=33 Score=23.53 Aligned_cols=41 Identities=12% Similarity=0.092 Sum_probs=28.6
Q ss_pred EecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHH
Q 032094 64 IMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYAL 107 (147)
Q Consensus 64 imGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~ 107 (147)
+.+.+.. +.|..+...|++.||+|+..=+. ..|+...++..
T Consensus 5 lYt~~~C-p~C~~ak~~L~~~gI~~~~idi~--~~~~~~~~~~~ 45 (81)
T PRK10329 5 IYTRNDC-VQCHATKRAMESRGFDFEMINVD--RVPEAAETLRA 45 (81)
T ss_pred EEeCCCC-HhHHHHHHHHHHCCCceEEEECC--CCHHHHHHHHH
Confidence 3344444 99999999999999998855443 45666555543
No 147
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=69.50 E-value=23 Score=31.39 Aligned_cols=76 Identities=11% Similarity=0.142 Sum_probs=50.7
Q ss_pred CeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEE--EE------cCCCChHHHHHHHHHHhhCCce---EEEEecCCC
Q 032094 59 PIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIK--IL------PPHQNCKEALSYALSAKERGIK---IIIVGDGVE 124 (147)
Q Consensus 59 ~~V~IimGS~SD---l~~~~~a~~~L~~fGI~~ev~--V~------SAHRtp~~l~~~~~~~~~~g~~---ViIAvAG~a 124 (147)
.++.||++..-. .+..++..+.|+.-|+++.+. +. .++-.++.+.++.+.+...+++ +|||+-|++
T Consensus 43 ~r~liVtD~~v~~~~~~l~~~v~~~L~~~g~~~~~~~~~~~~~~ge~~k~~~~~v~~i~~~~~~~~~dr~d~IIaiGGGs 122 (389)
T PRK06203 43 KKVLVVIDSGVLRAHPDLLEQITAYFAAHADVLELVAEPLVVPGGEAAKNDPALVEALHAAINRHGIDRHSYVLAIGGGA 122 (389)
T ss_pred CeEEEEECchHHHhhhhHHHHHHHHHHhcCCceeeeeeEEEccCCccCCCcHHHHHHHHHHHHHcCCCCCceEEEeCCcH
Confidence 368888865443 245678888888888876532 21 2333446677777777666666 999999885
Q ss_pred -Cchhhhhhcc
Q 032094 125 -AHLSGTCSCC 134 (147)
Q Consensus 125 -AhLpGvvAg~ 134 (147)
.-+++.+|+.
T Consensus 123 v~D~ak~iA~~ 133 (389)
T PRK06203 123 VLDMVGYAAAT 133 (389)
T ss_pred HHHHHHHHHHH
Confidence 4577777753
No 148
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=69.37 E-value=31 Score=30.52 Aligned_cols=99 Identities=16% Similarity=0.140 Sum_probs=59.5
Q ss_pred ChHHHhhcccccccccCCCcccccCCCCCCCCCCCeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCC----ChH
Q 032094 25 SNGSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQ----NCK 100 (147)
Q Consensus 25 ~l~~~k~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHR----tp~ 100 (147)
...++...|+.+.+.|..---+.+.+-.+-|.-+.+||||++.++.- .+....++++-.=.+++.+..+-= .+.
T Consensus 102 g~G~l~~~~~~lk~~L~~eGlfd~~~k~~lP~~p~~I~viTs~~gAa--~~D~~~~~~~r~p~~~~~~~~~~vQG~~A~~ 179 (438)
T PRK00286 102 GIGALAAAFEQLKEKLAAEGLFDPERKKPLPFFPKRIGVITSPTGAA--IRDILTVLRRRFPLVEVIIYPTLVQGEGAAA 179 (438)
T ss_pred CccHHHHHHHHHHHHHHHCCCCChhhcCCCCCCCCEEEEEeCCccHH--HHHHHHHHHhcCCCCeEEEecCcCcCccHHH
Confidence 34577777777766664332233332233344456899999988764 677777776543225655555432 355
Q ss_pred HHHHHHHHHhhCCceEEEEecCCCC
Q 032094 101 EALSYALSAKERGIKIIIVGDGVEA 125 (147)
Q Consensus 101 ~l~~~~~~~~~~g~~ViIAvAG~aA 125 (147)
.+.+-++.+...+++|||.+=|+-+
T Consensus 180 ~i~~al~~~~~~~~Dviii~RGGGS 204 (438)
T PRK00286 180 SIVAAIERANARGEDVLIVARGGGS 204 (438)
T ss_pred HHHHHHHHhcCCCCCEEEEecCCCC
Confidence 5555555555555799988887743
No 149
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=69.29 E-value=25 Score=23.27 Aligned_cols=57 Identities=16% Similarity=0.099 Sum_probs=37.5
Q ss_pred eEEEEecCC---CCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEec
Q 032094 60 IVGIIMESD---LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (147)
Q Consensus 60 ~V~IimGS~---SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvA 121 (147)
.|.|+.-+. .+++.+.+.+..|+..|+.+++.. -.+.+....+++ ...|+..+|-+-
T Consensus 3 ~v~ii~~~~~~~~~~~~a~~~~~~Lr~~g~~v~~~~--~~~~~~k~~~~a---~~~g~~~~iiig 62 (94)
T cd00738 3 DVAIVPLTDPRVEAREYAQKLLNALLANGIRVLYDD--RERKIGKKFREA---DLRGVPFAVVVG 62 (94)
T ss_pred EEEEEECCCCcHHHHHHHHHHHHHHHHCCCEEEecC--CCcCHhHHHHHH---HhCCCCEEEEEC
Confidence 477776666 678888888889999998666543 235555555554 456766554443
No 150
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=69.22 E-value=46 Score=27.57 Aligned_cols=36 Identities=28% Similarity=0.457 Sum_probs=21.0
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCC-eEEEEEcCC
Q 032094 59 PIVGIIMESDLDLPVMNDAARTLSDFGVP-YEIKILPPH 96 (147)
Q Consensus 59 ~~V~IimGS~SDl~~~~~a~~~L~~fGI~-~ev~V~SAH 96 (147)
|.++-|+|+ |.+-..++++.+++.|.+ .|+.+.|+|
T Consensus 91 p~ivsi~g~--~~~~~~~~a~~~~~~G~d~iElN~~cP~ 127 (296)
T cd04740 91 PVIASIAGS--TVEEFVEVAEKLADAGADAIELNISCPN 127 (296)
T ss_pred cEEEEEecC--CHHHHHHHHHHHHHcCCCEEEEECCCCC
Confidence 456666664 345555666666666665 456665544
No 151
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=69.10 E-value=7.1 Score=33.72 Aligned_cols=35 Identities=17% Similarity=0.278 Sum_probs=26.8
Q ss_pred EEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCchhh
Q 032094 90 IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG 129 (147)
Q Consensus 90 v~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLpG 129 (147)
.+|...|.....+.++.++ ++++|+++|...-+.+
T Consensus 182 atVtichs~T~~l~~~~~~-----ADIvI~AvG~~~~i~~ 216 (284)
T PRK14170 182 ATVTIAHSRTKDLPQVAKE-----ADILVVATGLAKFVKK 216 (284)
T ss_pred CEEEEeCCCCCCHHHHHhh-----CCEEEEecCCcCccCH
Confidence 4666668777778777754 6999999999887653
No 152
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=69.05 E-value=40 Score=26.04 Aligned_cols=60 Identities=25% Similarity=0.197 Sum_probs=40.5
Q ss_pred CCCeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcC-CCChHHHHHHHHHHhhCCceE
Q 032094 57 DAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPP-HQNCKEALSYALSAKERGIKI 116 (147)
Q Consensus 57 ~~~~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SA-HRtp~~l~~~~~~~~~~g~~V 116 (147)
..++|.|++|+-.--.-.--+++.|.+.|++.++..... .+..+......+..++-|.++
T Consensus 24 ~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~ 84 (169)
T PF03853_consen 24 KGPRVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKI 84 (169)
T ss_dssp TT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EE
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcE
Confidence 346899999999988889999999999999877755543 244444444445555555444
No 153
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=69.02 E-value=7 Score=33.69 Aligned_cols=52 Identities=19% Similarity=0.240 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhCCCeE-------------------------EEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCch
Q 032094 73 VMNDAARTLSDFGVPYE-------------------------IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL 127 (147)
Q Consensus 73 ~~~~a~~~L~~fGI~~e-------------------------v~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhL 127 (147)
+...+.++|+.+|++++ ..|+..|+..+.+.++.++ ++++|+++|...-+
T Consensus 140 Tp~avi~lL~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T~nl~~~~~~-----ADIvIsAvGkp~~i 214 (282)
T PRK14166 140 TPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSLYTRQ-----ADLIIVAAGCVNLL 214 (282)
T ss_pred CHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhh-----CCEEEEcCCCcCcc
Confidence 45666777777777532 5677788887778877753 69999999998876
Q ss_pred hh
Q 032094 128 SG 129 (147)
Q Consensus 128 pG 129 (147)
.+
T Consensus 215 ~~ 216 (282)
T PRK14166 215 RS 216 (282)
T ss_pred CH
Confidence 54
No 154
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=69.02 E-value=49 Score=25.67 Aligned_cols=59 Identities=12% Similarity=0.233 Sum_probs=40.8
Q ss_pred EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEec
Q 032094 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (147)
Q Consensus 61 V~IimGS~SD---l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvA 121 (147)
|++|+.+..+ ....+.+.+.++++|. ++-+......++...++++....++++-+|...
T Consensus 2 Igvi~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~ 63 (273)
T cd06292 2 VGLLVPELSNPIFPAFAEAIEAALAQYGY--TVLLCNTYRGGVSEADYVEDLLARGVRGVVFIS 63 (273)
T ss_pred EEEEeCCCcCchHHHHHHHHHHHHHHCCC--EEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeC
Confidence 5666654333 2344567777778874 566677777888888888888788888777653
No 155
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=68.95 E-value=37 Score=26.34 Aligned_cols=62 Identities=13% Similarity=0.210 Sum_probs=37.4
Q ss_pred eEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEc--CCCChHHHHHHHHHHhhCCceEEEEecCC
Q 032094 60 IVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILP--PHQNCKEALSYALSAKERGIKIIIVGDGV 123 (147)
Q Consensus 60 ~V~IimGS~SD---l~~~~~a~~~L~~fGI~~ev~V~S--AHRtp~~l~~~~~~~~~~g~~ViIAvAG~ 123 (147)
+|+|+...-+| ....+.+.+.+++.|. .+.+.. ....+++..++++.....+++-+|.....
T Consensus 1 ~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgvii~~~~ 67 (273)
T cd06310 1 KIALVPKGTTSDFWQAVKAGAEAAAKELGV--KVTFQGPASETDVAGQVNLLENAIARGPDAILLAPTD 67 (273)
T ss_pred CeEEEecCCCcHHHHHHHHHHHHHHHHcCC--EEEEecCccCCCHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 47777754343 2334455566677775 444443 25688887787776666677777765443
No 156
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=68.87 E-value=20 Score=23.41 Aligned_cols=40 Identities=8% Similarity=0.061 Sum_probs=27.9
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHH
Q 032094 65 MESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYAL 107 (147)
Q Consensus 65 mGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~ 107 (147)
.+..+ =|.|.++.+.|++.||+|+..=+ .+.|+...++.+
T Consensus 4 y~~~~-Cp~C~~ak~~L~~~~i~~~~~di--~~~~~~~~~~~~ 43 (72)
T TIGR02194 4 YSKNN-CVQCKMTKKALEEHGIAFEEINI--DEQPEAIDYVKA 43 (72)
T ss_pred EeCCC-CHHHHHHHHHHHHCCCceEEEEC--CCCHHHHHHHHH
Confidence 34433 38999999999999999886533 355655555543
No 157
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=68.73 E-value=29 Score=30.15 Aligned_cols=61 Identities=8% Similarity=-0.019 Sum_probs=49.2
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCC-hHHHHHHHHHHhhCCceEEEEecCCCCc
Q 032094 65 MESDLDLPVMNDAARTLSDFGVPYEIKILPPHQN-CKEALSYALSAKERGIKIIIVGDGVEAH 126 (147)
Q Consensus 65 mGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRt-p~~l~~~~~~~~~~g~~ViIAvAG~aAh 126 (147)
.-+.+|.+.+.+..+..++.|....+.+.-+||. |+++.++++.+.+-|++.| .++-..+.
T Consensus 108 ~~~~~e~~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i-~i~DT~G~ 169 (337)
T PRK08195 108 ATHCTEADVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCV-YVVDSAGA 169 (337)
T ss_pred EEecchHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEE-EeCCCCCC
Confidence 3478889999999999999999999999999987 6888899988888888764 44444433
No 158
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=68.64 E-value=34 Score=27.65 Aligned_cols=91 Identities=9% Similarity=0.059 Sum_probs=54.9
Q ss_pred HHHhhcccccccccCCCcccccCCCCCCCCCCCeEEEEecCCCCHH---HHHHHHHHHHHhCCCeEEEEEcCCCChHHHH
Q 032094 27 GSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLDLP---VMNDAARTLSDFGVPYEIKILPPHQNCKEAL 103 (147)
Q Consensus 27 ~~~k~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~SDl~---~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~ 103 (147)
++.+++....++++......... .........|++++...++.- +.+.+.+.+++.| |.+.+...+..++...
T Consensus 30 ~~tr~rV~~~a~~lgY~pn~~a~--~l~~~~~~~Igvv~~~~~~~f~~~l~~~i~~~~~~~g--~~~~i~~~~~~~~~~~ 105 (329)
T TIGR01481 30 PATRKKVLEVIKRLDYRPNAVAR--GLASKRTTTVGVIIPDISNIYYAELARGIEDIATMYK--YNIILSNSDEDPEKEV 105 (329)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHH--HHhhCCCCEEEEEeCCCCchhHHHHHHHHHHHHHHcC--CEEEEEeCCCCHHHHH
Confidence 45666666677777653210000 112223457999997655522 2334455566676 5677777788888888
Q ss_pred HHHHHHhhCCceEEEEec
Q 032094 104 SYALSAKERGIKIIIVGD 121 (147)
Q Consensus 104 ~~~~~~~~~g~~ViIAvA 121 (147)
++++....++++-+|...
T Consensus 106 ~~~~~l~~~~vdGiIi~~ 123 (329)
T TIGR01481 106 QVLNTLLSKQVDGIIFMG 123 (329)
T ss_pred HHHHHHHhCCCCEEEEeC
Confidence 887777677787777643
No 159
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=68.40 E-value=40 Score=27.68 Aligned_cols=91 Identities=7% Similarity=-0.038 Sum_probs=55.6
Q ss_pred HHHhhcccccccccCCCcccccCCCCCCCCCCCeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHH
Q 032094 27 GSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEAL 103 (147)
Q Consensus 27 ~~~k~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~SD---l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~ 103 (147)
++.+++...+++++......... .........|++++...+| ..+.+.+.+.++++| |++-+...+..+++..
T Consensus 30 ~~tr~kV~~~a~elgY~pn~~a~--~l~~~~~~~Igvi~~~~~~~f~~~l~~gi~~~~~~~g--y~~~~~~~~~~~~~~~ 105 (346)
T PRK10401 30 ADTREAVMKAVSELGYRPNANAQ--ALATQVSDTIGVVVMDVSDAFFGALVKAVDLVAQQHQ--KYVLIGNSYHEAEKER 105 (346)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHH--HhhcCCCCEEEEEeCCCCCccHHHHHHHHHHHHHHCC--CEEEEEcCCCChHHHH
Confidence 45666666666666543100000 1122234579999865444 224455666777887 4566777777888888
Q ss_pred HHHHHHhhCCceEEEEec
Q 032094 104 SYALSAKERGIKIIIVGD 121 (147)
Q Consensus 104 ~~~~~~~~~g~~ViIAvA 121 (147)
++++....++++-||...
T Consensus 106 ~~i~~l~~~~vdGiIi~~ 123 (346)
T PRK10401 106 HAIEVLIRQRCNALIVHS 123 (346)
T ss_pred HHHHHHHhcCCCEEEEeC
Confidence 888777777788777664
No 160
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=68.36 E-value=39 Score=23.79 Aligned_cols=67 Identities=19% Similarity=0.258 Sum_probs=46.3
Q ss_pred EEecCCCCHHHHHHHHHHHHHhC-CCeE-------------------EEEEcCCCChHHHHHHHHHHhhCCceEEEEecC
Q 032094 63 IIMESDLDLPVMNDAARTLSDFG-VPYE-------------------IKILPPHQNCKEALSYALSAKERGIKIIIVGDG 122 (147)
Q Consensus 63 IimGS~SDl~~~~~a~~~L~~fG-I~~e-------------------v~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG 122 (147)
.+.|.-+-...+..+...|..+| ++.. +-++|......++.+.++.++.+|++||.--..
T Consensus 3 ~i~G~G~S~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~iT~~ 82 (126)
T cd05008 3 LIVGCGTSYHAALVAKYLLERLAGIPVEVEAASEFRYRRPLLDEDTLVIAISQSGETADTLAALRLAKEKGAKTVAITNV 82 (126)
T ss_pred EEEEccHHHHHHHHHHHHHHHhcCCceEEEehhHhhhcCCCCCCCcEEEEEeCCcCCHHHHHHHHHHHHcCCeEEEEECC
Confidence 34566666677777777777765 5422 566777788888999999999999887655554
Q ss_pred CCCchhh
Q 032094 123 VEAHLSG 129 (147)
Q Consensus 123 ~aAhLpG 129 (147)
..+-|..
T Consensus 83 ~~s~la~ 89 (126)
T cd05008 83 VGSTLAR 89 (126)
T ss_pred CCChHHH
Confidence 5555443
No 161
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=68.33 E-value=23 Score=23.62 Aligned_cols=34 Identities=24% Similarity=0.214 Sum_probs=27.1
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEc
Q 032094 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP 94 (147)
Q Consensus 59 ~~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~S 94 (147)
..|.|.+. +.=+.|.++.+.|+++||+|+..-+.
T Consensus 8 ~~V~ly~~--~~Cp~C~~ak~~L~~~gi~y~~idi~ 41 (79)
T TIGR02190 8 ESVVVFTK--PGCPFCAKAKATLKEKGYDFEEIPLG 41 (79)
T ss_pred CCEEEEEC--CCCHhHHHHHHHHHHcCCCcEEEECC
Confidence 45666655 66799999999999999999975543
No 162
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=68.33 E-value=40 Score=26.46 Aligned_cols=59 Identities=14% Similarity=0.142 Sum_probs=35.7
Q ss_pred EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecC
Q 032094 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 122 (147)
Q Consensus 61 V~IimGS~SD---l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG 122 (147)
|++|+.+.+| ....+.+.+.++++|. ++.+.... .+++..+.++....++++.||..+.
T Consensus 2 Ig~v~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~-~~~~~~~~i~~~~~~~~dgiii~~~ 63 (289)
T cd01540 2 IGFIVKQPEEPWFQTEWKFAKKAAKEKGF--TVVKIDVP-DGEKVLSAIDNLGAQGAKGFVICVP 63 (289)
T ss_pred eeeecCCCCCcHHHHHHHHHHHHHHHcCC--EEEEccCC-CHHHHHHHHHHHHHcCCCEEEEccC
Confidence 6666665444 2223445667777774 45555555 6666666666666677776666543
No 163
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=68.23 E-value=21 Score=31.01 Aligned_cols=52 Identities=12% Similarity=0.110 Sum_probs=43.4
Q ss_pred CeEEEEecCC-CCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHh
Q 032094 59 PIVGIIMESD-LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAK 110 (147)
Q Consensus 59 ~~V~IimGS~-SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~ 110 (147)
.++.|..|.+ ++.-+.+...+.++++||.+++...+..-+.+++.+.++...
T Consensus 34 ~LaiI~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN 86 (297)
T PRK14186 34 GLAVLRVGDDPASAVYVRNKEKACARVGIASFGKHLPADTSQAEVEALIAQLN 86 (297)
T ss_pred eEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4777888866 456677778889999999999999999999999999997663
No 164
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=68.09 E-value=22 Score=27.61 Aligned_cols=49 Identities=8% Similarity=0.013 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhh-----CCceEEEE
Q 032094 69 LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE-----RGIKIIIV 119 (147)
Q Consensus 69 SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~-----~g~~ViIA 119 (147)
...|.+.++..+|+.+||+|+.+=+|-| ++...++.+.... .-+.|||-
T Consensus 14 ~t~~~C~~ak~iL~~~~V~~~e~DVs~~--~~~~~EL~~~~g~~~~~~tvPqVFI~ 67 (147)
T cd03031 14 KTFEDCNNVRAILESFRVKFDERDVSMD--SGFREELRELLGAELKAVSLPRVFVD 67 (147)
T ss_pred CcChhHHHHHHHHHHCCCcEEEEECCCC--HHHHHHHHHHhCCCCCCCCCCEEEEC
Confidence 3889999999999999999998888866 3444444433221 22467765
No 165
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=68.04 E-value=15 Score=31.63 Aligned_cols=52 Identities=12% Similarity=0.142 Sum_probs=42.7
Q ss_pred CeEEEEecCCC-CHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHh
Q 032094 59 PIVGIIMESDL-DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAK 110 (147)
Q Consensus 59 ~~V~IimGS~S-Dl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~ 110 (147)
.++.|..|.+. +.-+.+...+.++++||.+++...+..-+.+++.+.++...
T Consensus 32 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN 84 (282)
T PRK14166 32 CLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNENTTQNELLALINTLN 84 (282)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 47788888664 45566777889999999999999999999999999987653
No 166
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=68.00 E-value=7.5 Score=33.55 Aligned_cols=52 Identities=13% Similarity=0.139 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhCCCeE-------------------------EEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCch
Q 032094 73 VMNDAARTLSDFGVPYE-------------------------IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL 127 (147)
Q Consensus 73 ~~~~a~~~L~~fGI~~e-------------------------v~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhL 127 (147)
+...+.++|+.+||+.+ -+|...|.....+.++.++ ++++|+++|.+.-+
T Consensus 140 Tp~avi~ll~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T~nl~~~~~~-----ADIvI~AvGk~~~i 214 (282)
T PRK14182 140 TPAGVMRMLDEARVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRTADLAGEVGR-----ADILVAAIGKAELV 214 (282)
T ss_pred CHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhh-----CCEEEEecCCcCcc
Confidence 56677788888887642 5677789888778877753 69999999987655
Q ss_pred hh
Q 032094 128 SG 129 (147)
Q Consensus 128 pG 129 (147)
.+
T Consensus 215 ~~ 216 (282)
T PRK14182 215 KG 216 (282)
T ss_pred CH
Confidence 43
No 167
>PF02016 Peptidase_S66: LD-carboxypeptidase; InterPro: IPR003507 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature is found in the Escherichia coli microcin C7 self-immunity protein mccF and in muramoyltetrapeptide carboxypeptidase (3.4.17.13 from EC, LD-carboxypeptidase A). LD-carboxypeptidase A belongs to MEROPS peptidase family S66 (clan SS). The entry also contains uncharacterised proteins including hypothetical proteins from various bacteria archaea.; PDB: 1ZRS_A 1ZL0_B 2AUM_B 2AUN_B 3TLG_A 3TLC_A 3TLZ_B 3TLY_B 3TLE_A 3TLB_B ....
Probab=67.98 E-value=26 Score=29.50 Aligned_cols=66 Identities=15% Similarity=0.170 Sum_probs=42.1
Q ss_pred EEEEecC--CCCHHHHHHHHHHHHHhCCCeEEEEEc--CCC----C-hHHHHHHHHHHhhCCceEEEEecCCCCc
Q 032094 61 VGIIMES--DLDLPVMNDAARTLSDFGVPYEIKILP--PHQ----N-CKEALSYALSAKERGIKIIIVGDGVEAH 126 (147)
Q Consensus 61 V~IimGS--~SDl~~~~~a~~~L~~fGI~~ev~V~S--AHR----t-p~~l~~~~~~~~~~g~~ViIAvAG~aAh 126 (147)
|+||.=| ..|.+..+++.+.|+++|....+.=.. .|. + -+|..++.+...+..++.|+++-|+-+.
T Consensus 1 I~ivaPS~~~~~~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~ags~~~Ra~dL~~a~~d~~i~aI~~~rGGyg~ 75 (284)
T PF02016_consen 1 IGIVAPSLSPIDPERLERGIKRLESWGFKVVVGPHVFKRDGYLAGSDEERAEDLNEAFADPEIDAIWCARGGYGA 75 (284)
T ss_dssp EEEE-SSHHHHCHHHHHHHHHHHHHTTEEEEE-TTTTS-BTTBSS-HHHHHHHHHHHHHSTTEEEEEES--SS-G
T ss_pred CEEEeCCCCccCHHHHHHHHHHHHhCCCEEEECCcccccCCCcCCCHHHHHHHHHHHhcCCCCCEEEEeeccccH
Confidence 4566555 568899999999999999865443111 111 2 2455666677778889999999998664
No 168
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=67.87 E-value=44 Score=25.63 Aligned_cols=59 Identities=17% Similarity=0.378 Sum_probs=36.9
Q ss_pred EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEec
Q 032094 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (147)
Q Consensus 61 V~IimGS~SD---l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvA 121 (147)
|++|..+-+| ....+.+.+.++++|+ ++.+......+++..++++....++++.+|...
T Consensus 2 I~vv~~~~~~~~~~~~~~~i~~~~~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~~~dgii~~~ 63 (268)
T cd06323 2 IGLSVSTLNNPFFVTLKDGAQKEAKELGY--ELTVLDAQNDAAKQLNDIEDLITRGVDAIIINP 63 (268)
T ss_pred eeEecccccCHHHHHHHHHHHHHHHHcCc--eEEecCCCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 5666655444 3445566677777774 444555556777777777666666677666553
No 169
>PRK12757 cell division protein FtsN; Provisional
Probab=67.72 E-value=69 Score=27.54 Aligned_cols=65 Identities=17% Similarity=0.052 Sum_probs=52.7
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEE-------EE-EcCCCChHHHHHHHHHHhhCCc-eEEEEecCC
Q 032094 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEI-------KI-LPPHQNCKEALSYALSAKERGI-KIIIVGDGV 123 (147)
Q Consensus 59 ~~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev-------~V-~SAHRtp~~l~~~~~~~~~~g~-~ViIAvAG~ 123 (147)
....|=.||-+|..-++....-|...|++..+ || ++...+.++..++.+..+..|+ .+||..+|+
T Consensus 183 ~~~~VQVGAF~~~~nAe~L~arL~~~G~~a~I~~~gg~yRVrVGPf~sr~~A~~~~~rLk~~G~~~~iiva~gg 256 (256)
T PRK12757 183 QRWMVQCGSFKGTEQAESVRAQLAFAGIESRITTGGGWNRVVLGPYNSKAAADKMLQRLKGAGHSGCIPLAAGG 256 (256)
T ss_pred ccEEEEEeeCCCHHHHHHHHHHHHhcCCceEEeecCCEEEEEeCCCCCHHHHHHHHHHHHHcCCCCeEEeccCC
Confidence 45678899999999999999999999987442 22 5567788899999988888777 888888775
No 170
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=67.45 E-value=7.9 Score=33.47 Aligned_cols=35 Identities=9% Similarity=0.176 Sum_probs=26.3
Q ss_pred EEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCchhh
Q 032094 90 IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG 129 (147)
Q Consensus 90 v~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLpG 129 (147)
-+|...|+....+.++.++ .+++|+++|.++-+.+
T Consensus 180 aTVtichs~T~~l~~~~~~-----ADIvIsAvGkp~~i~~ 214 (287)
T PRK14173 180 ATVTLAHSKTQDLPAVTRR-----ADVLVVAVGRPHLITP 214 (287)
T ss_pred CEEEEeCCCCCCHHHHHhh-----CCEEEEecCCcCccCH
Confidence 4566667777777777653 6999999999987653
No 171
>PRK09492 treR trehalose repressor; Provisional
Probab=67.39 E-value=40 Score=27.07 Aligned_cols=91 Identities=12% Similarity=0.034 Sum_probs=55.2
Q ss_pred HHHhhcccccccccCCCcccccCCCCCCCCCCCeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHH
Q 032094 27 GSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEAL 103 (147)
Q Consensus 27 ~~~k~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~SD---l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~ 103 (147)
++.+++....++++......... .........|+++....++ ...++.+.+.+++.|. ++-+......++...
T Consensus 33 ~~tr~rV~~~a~elgY~pn~~a~--~l~~~~~~~Ig~i~~~~~~~~~~~~~~~i~~~~~~~gy--~~~~~~~~~~~~~~~ 108 (315)
T PRK09492 33 EETRERVEAVINQHGFSPSKSAR--AMRGQSDKVVGIIVSRLDSLSENQAVRTMLPAFYEQGY--DPIIMESQFSPEKVN 108 (315)
T ss_pred HHHHHHHHHHHHHHCCCcCHHHH--HhhcCCCCeEEEEecCCcCcccHHHHHHHHHHHHHcCC--eEEEEecCCChHHHH
Confidence 34555666666666542100000 0112233579999864333 4456777788888884 566666777888887
Q ss_pred HHHHHHhhCCceEEEEec
Q 032094 104 SYALSAKERGIKIIIVGD 121 (147)
Q Consensus 104 ~~~~~~~~~g~~ViIAvA 121 (147)
++++....++++-+|...
T Consensus 109 ~~~~~l~~~~vdgiIi~~ 126 (315)
T PRK09492 109 EHLGVLKRRNVDGVILFG 126 (315)
T ss_pred HHHHHHHhcCCCEEEEeC
Confidence 887777777788777653
No 172
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=67.30 E-value=18 Score=31.26 Aligned_cols=47 Identities=13% Similarity=0.063 Sum_probs=36.1
Q ss_pred CCCeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHH
Q 032094 57 DAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSA 109 (147)
Q Consensus 57 ~~~~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~ 109 (147)
-+++|+||+|++| .+..++++.|..-|. +|+=++|+.++.++.++..
T Consensus 33 ~~~~~~vVTGans--GIG~eta~~La~~Ga----~Vv~~~R~~~~~~~~~~~i 79 (314)
T KOG1208|consen 33 LSGKVALVTGATS--GIGFETARELALRGA----HVVLACRNEERGEEAKEQI 79 (314)
T ss_pred CCCcEEEEECCCC--chHHHHHHHHHhCCC----EEEEEeCCHHHHHHHHHHH
Confidence 3468999999999 889999999999993 4555778876666655443
No 173
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=67.22 E-value=51 Score=24.72 Aligned_cols=66 Identities=14% Similarity=0.215 Sum_probs=43.7
Q ss_pred EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCchh
Q 032094 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS 128 (147)
Q Consensus 61 V~IimGS~SD---l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLp 128 (147)
|+++.-..++ ....+.+.+.++++|+ ++.+...+..++...+.++....++++.+|........+.
T Consensus 2 ig~v~~~~~~~~~~~~~~g~~~~~~~~g~--~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~ 70 (264)
T cd01537 2 IGVLVPDLDNPFFAQVLKGIEEAAKAAGY--QVLLANSQNDAEKQLSALENLIARGVDGIIIAPSDLTAPT 70 (264)
T ss_pred eEEEEcCCCChHHHHHHHHHHHHHHHcCC--eEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCCcchh
Confidence 5566633211 3344455566777886 5666667778888888887777778999988776655544
No 174
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=67.10 E-value=29 Score=24.08 Aligned_cols=62 Identities=18% Similarity=0.229 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCchhhhhhccccCc
Q 032094 72 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGTCSCCKFSN 138 (147)
Q Consensus 72 ~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLpGvvAg~T~~~ 138 (147)
..++++.+.++++++++. +..-+ .| ...+.+.+++.+++.+|.++.+.+.+...+-|.+...
T Consensus 49 ~~l~~~~~~~~~~~~~~~--~~~~~-~~--~~~I~~~~~~~~~dllviG~~~~~~~~~~~~Gs~~~~ 110 (124)
T cd01987 49 RRLAEALRLAEELGAEVV--TLPGD-DV--AEAIVEFAREHNVTQIVVGKSRRSRWRELFRGSLVDR 110 (124)
T ss_pred HHHHHHHHHHHHcCCEEE--EEeCC-cH--HHHHHHHHHHcCCCEEEeCCCCCchHHHHhcccHHHH
Confidence 456667777788888643 32222 23 3344455557789999999999999998887766544
No 175
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=66.92 E-value=42 Score=25.67 Aligned_cols=57 Identities=14% Similarity=0.150 Sum_probs=32.6
Q ss_pred eEEEEecCCCC----HHHHHHHHHHHH-HhCCCeEEEEEcCCC-------------ChHHHHHHHHHHhhCCceEEEEe
Q 032094 60 IVGIIMESDLD----LPVMNDAARTLS-DFGVPYEIKILPPHQ-------------NCKEALSYALSAKERGIKIIIVG 120 (147)
Q Consensus 60 ~V~IimGS~SD----l~~~~~a~~~L~-~fGI~~ev~V~SAHR-------------tp~~l~~~~~~~~~~g~~ViIAv 120 (147)
+|.+|.||.+. ...++.+.+.+. ..|.++ .+..... .|+.+.++.+.... .+.||-+
T Consensus 1 kIl~i~GS~r~~s~t~~l~~~~~~~l~~~~g~ev--~~idL~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--AD~iIi~ 75 (174)
T TIGR03566 1 KVVGVSGSLTRPSRTLALVEALVAELAARLGISP--RTIDLADLAPSLGGALWRSQLPPDAERILQAIES--ADLLVVG 75 (174)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHhcCCeE--EEEEhhhcChhhccccccCCCCHHHHHHHHHHHH--CCEEEEE
Confidence 48899999976 456666666654 456543 3333222 36666666655544 3444433
No 176
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=66.81 E-value=13 Score=23.60 Aligned_cols=33 Identities=21% Similarity=0.188 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHH
Q 032094 70 DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEA 102 (147)
Q Consensus 70 Dl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l 102 (147)
.-+.++++...|++.|++|+...+.....++++
T Consensus 8 ~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~ 40 (73)
T cd03059 8 DDVYSHRVRIVLAEKGVSVEIIDVDPDNPPEDL 40 (73)
T ss_pred CChhHHHHHHHHHHcCCccEEEEcCCCCCCHHH
Confidence 446889999999999999998877644333333
No 177
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=66.80 E-value=56 Score=26.33 Aligned_cols=62 Identities=11% Similarity=0.138 Sum_probs=41.0
Q ss_pred eEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEE-cCCCChHHHHHHHHHHhhCCceEEEEecCC
Q 032094 60 IVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKIL-PPHQNCKEALSYALSAKERGIKIIIVGDGV 123 (147)
Q Consensus 60 ~V~IimGS~SD---l~~~~~a~~~L~~fGI~~ev~V~-SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~ 123 (147)
+|+++..+.+| ..+.+.+.+.++++|+ ++.+. .....++...++++.....+++-||..+..
T Consensus 1 ~I~vi~~~~~~~f~~~i~~gi~~~a~~~g~--~v~~~~~~~~d~~~~~~~i~~~~~~~~DgiIi~~~~ 66 (298)
T cd06302 1 TIAFVPKVTGIPYFNRMEEGAKEAAKELGV--DAIYVGPTTADAAGQVQIIEDLIAQGVDAIAVVPND 66 (298)
T ss_pred CEEEEEcCCCChHHHHHHHHHHHHHHHhCC--eEEEECCCCCCHHHHHHHHHHHHhcCCCEEEEecCC
Confidence 36777766555 2344566677778875 55554 455678888888877767778877776543
No 178
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=66.71 E-value=8.1 Score=33.33 Aligned_cols=35 Identities=14% Similarity=0.263 Sum_probs=26.1
Q ss_pred EEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCchhh
Q 032094 90 IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG 129 (147)
Q Consensus 90 v~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLpG 129 (147)
.+|...|.....+.++.++ .+++|+++|...-+.+
T Consensus 181 atVtichs~T~~l~~~~~~-----ADIvI~AvG~p~~i~~ 215 (282)
T PRK14169 181 ATVTIAHSKTRNLKQLTKE-----ADILVVAVGVPHFIGA 215 (282)
T ss_pred CEEEEECCCCCCHHHHHhh-----CCEEEEccCCcCccCH
Confidence 5666778666667777653 6999999999886654
No 179
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=66.07 E-value=24 Score=30.48 Aligned_cols=52 Identities=19% Similarity=0.299 Sum_probs=42.8
Q ss_pred CeEEEEecCCC-CHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHh
Q 032094 59 PIVGIIMESDL-DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAK 110 (147)
Q Consensus 59 ~~V~IimGS~S-Dl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~ 110 (147)
.++.|+.|.+. +.-+.+...+.++++||.+++.-.+..-+.+++.+.++...
T Consensus 33 ~La~I~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN 85 (282)
T PRK14180 33 KLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELIDQLN 85 (282)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 57888888664 45566677888999999999999999999999999997663
No 180
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=66.04 E-value=18 Score=25.42 Aligned_cols=41 Identities=15% Similarity=0.080 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEc-CCCChHHHHHHHHHH
Q 032094 69 LDLPVMNDAARTLSDFGVPYEIKILP-PHQNCKEALSYALSA 109 (147)
Q Consensus 69 SDl~~~~~a~~~L~~fGI~~ev~V~S-AHRtp~~l~~~~~~~ 109 (147)
+.=+.|++|.+.|++.||+|+..=+. -.-+.+++.++....
T Consensus 7 ~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~~l~~~~~~~ 48 (105)
T cd02977 7 PNCSTSRKALAWLEEHGIEYEFIDYLKEPPTKEELKELLAKL 48 (105)
T ss_pred CCCHHHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHhc
Confidence 44688999999999999999865554 455677777777543
No 181
>KOG3857 consensus Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=65.56 E-value=14 Score=33.91 Aligned_cols=74 Identities=15% Similarity=0.176 Sum_probs=49.1
Q ss_pred eEEEEec-CCCCHHHHHHHHHHHHHhCCCeEEEE-EcCCCChHHHHHHHHHHhhCCceEEEEecCCCCchhhhhhc
Q 032094 60 IVGIIME-SDLDLPVMNDAARTLSDFGVPYEIKI-LPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGTCSC 133 (147)
Q Consensus 60 ~V~IimG-S~SDl~~~~~a~~~L~~fGI~~ev~V-~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLpGvvAg 133 (147)
++.+++- .-+-++-.+.+.+.|++-||+|+|.= .-.--|-..+.+-++.+++..++.||++-|+|+|=-.=.|+
T Consensus 72 k~llvTDkni~~~~~~~~a~~~L~~~~I~~~vyD~v~~ePtv~s~~~alefak~~~fDs~vaiGGGSa~DtaKaaa 147 (465)
T KOG3857|consen 72 KTLLVTDKNIAKLGLVKVAQDSLEENGINVEVYDKVQPEPTVGSVTAALEFAKKKNFDSFVAIGGGSAHDTAKAAA 147 (465)
T ss_pred ceEEeeCCChhhcccHHHHHHHHHHcCCceEEecCccCCCchhhHHHHHHHHHhcccceEEEEcCcchhhhHHHHH
Confidence 4555542 34556778899999999999988421 11223333444555666677899999999999985443333
No 182
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=65.38 E-value=35 Score=29.80 Aligned_cols=72 Identities=8% Similarity=0.056 Sum_probs=52.7
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEc---CCCChHHHHHHHHHHhhCCc---eEEEEecCCCC-chhhhh
Q 032094 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP---PHQNCKEALSYALSAKERGI---KIIIVGDGVEA-HLSGTC 131 (147)
Q Consensus 59 ~~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~S---AHRtp~~l~~~~~~~~~~g~---~ViIAvAG~aA-hLpGvv 131 (147)
.++.||+...-.-...+...+.|+ ++ ++.+.+ .+++.+.+.+..+.+.+.|+ +++||+-|++. -++|.+
T Consensus 20 ~r~lIVtD~~v~~l~~~~l~~~L~--~~--~~~~~~~~e~~k~l~~v~~~~~~~~~~~~~r~d~iIaiGGGsv~D~ak~v 95 (346)
T cd08196 20 ENDVFIVDANVAELYRDRLDLPLD--AA--PVIAIDATEENKSLEAVSSVIESLRQNGARRNTHLVAIGGGIIQDVTTFV 95 (346)
T ss_pred CeEEEEECccHHHHHHHHHHHHhc--CC--eEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHH
Confidence 368888877554446666666665 44 444544 59999999999988888888 79999999864 577777
Q ss_pred hcc
Q 032094 132 SCC 134 (147)
Q Consensus 132 Ag~ 134 (147)
|+.
T Consensus 96 A~~ 98 (346)
T cd08196 96 ASI 98 (346)
T ss_pred HHH
Confidence 753
No 183
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=65.38 E-value=27 Score=24.94 Aligned_cols=54 Identities=20% Similarity=0.199 Sum_probs=32.7
Q ss_pred HHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCchhhhh
Q 032094 75 NDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGTC 131 (147)
Q Consensus 75 ~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLpGvv 131 (147)
+++.+.|+..|++++..+.-- ..| ...+++++++.+++.||-++-+-..|..++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~g-~~~--~~~I~~~a~~~~~dlIV~Gs~g~~~l~~~~ 121 (146)
T cd01989 68 LPYRCFCSRKGVQCEDVVLED-DDV--AKAIVEYVADHGITKLVMGASSDNHFSMKF 121 (146)
T ss_pred HHHHHHHhhcCCeEEEEEEeC-CcH--HHHHHHHHHHcCCCEEEEeccCCCceeecc
Confidence 344445555678777666521 122 344556666777888888877766665444
No 184
>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT. Members of this family are the periplasmic protein TorT which, together with the the TorS/TorR histidine kinase/response regulator system, regulates expression of the torCAD operon for trimethylamine N-oxide reductase (TMAO reductase). It appears to bind an inducer for TMAO reductase, and shows homology to a periplasmic D-ribose binding protein.
Probab=65.19 E-value=58 Score=26.21 Aligned_cols=61 Identities=20% Similarity=0.259 Sum_probs=38.4
Q ss_pred EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEcC--CCChHHHHHHHHHHhhCCceEEEEecCC
Q 032094 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPP--HQNCKEALSYALSAKERGIKIIIVGDGV 123 (147)
Q Consensus 61 V~IimGS~SD---l~~~~~a~~~L~~fGI~~ev~V~SA--HRtp~~l~~~~~~~~~~g~~ViIAvAG~ 123 (147)
+++++-..+| ....+.+.+.+++.|.. +.+.+. ...+++..++++....++++-||..+..
T Consensus 2 igvvvp~~~n~f~~~~~~gi~~~a~~~g~~--v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~ 67 (295)
T TIGR02955 2 LCALYPHLKDSYWLSINYGMVEQAKHLGVE--LKVLEAGGYPNLDKQLAQIEQCKSWGADAILLGTVS 67 (295)
T ss_pred eeEEecCCCcHHHHHHHHHHHHHHHHhCCE--EEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEecCC
Confidence 5666655555 23334555667777764 444444 3467777788887778888887776543
No 185
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=65.00 E-value=17 Score=23.46 Aligned_cols=34 Identities=18% Similarity=0.112 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHH
Q 032094 69 LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEA 102 (147)
Q Consensus 69 SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l 102 (147)
..-+.+.++...|++.|++|+..-+.....++++
T Consensus 7 ~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~~~~~ 40 (71)
T cd03060 7 RRCPYAMRARMALLLAGITVELREVELKNKPAEM 40 (71)
T ss_pred CCCcHHHHHHHHHHHcCCCcEEEEeCCCCCCHHH
Confidence 3446889999999999999997766654334333
No 186
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=64.98 E-value=30 Score=29.89 Aligned_cols=52 Identities=12% Similarity=0.135 Sum_probs=42.6
Q ss_pred CeEEEEecCCCC-HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHh
Q 032094 59 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAK 110 (147)
Q Consensus 59 ~~V~IimGS~SD-l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~ 110 (147)
.++.|+.|.+.| .-+.+...+.++++||.+++.-.+..-+.+++.+.++...
T Consensus 34 ~La~i~vg~~~~s~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~i~~lN 86 (296)
T PRK14188 34 GLAVVLVGEDPASQVYVRSKGKQTKEAGMASFEHKLPADTSQAELLALIARLN 86 (296)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 467777786654 4456668889999999999999999999999999997663
No 187
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=64.86 E-value=35 Score=22.68 Aligned_cols=48 Identities=23% Similarity=0.204 Sum_probs=31.4
Q ss_pred hCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCchhhhhhccc
Q 032094 84 FGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGTCSCCK 135 (147)
Q Consensus 84 fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLpGvvAg~T 135 (147)
.|+++...+.. ..+ ...+.+.++.++++++|.++.....+...+-+.+
T Consensus 68 ~~~~~~~~~~~--~~~--~~~i~~~~~~~~~dlvvig~~~~~~~~~~~~~~~ 115 (130)
T cd00293 68 AGVKVETVVLE--GDP--AEAILEAAEELGADLIVMGSRGRSGLRRLLLGSV 115 (130)
T ss_pred CCCceEEEEec--CCC--HHHHHHHHHHcCCCEEEEcCCCCCccceeeeccH
Confidence 57777666553 222 4555555667789999999988888766554443
No 188
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=64.78 E-value=43 Score=27.99 Aligned_cols=66 Identities=15% Similarity=0.080 Sum_probs=48.3
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEE--cCCCC-hHHHHHHHHHHhhCCceEEEEecCCCCch
Q 032094 61 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKIL--PPHQN-CKEALSYALSAKERGIKIIIVGDGVEAHL 127 (147)
Q Consensus 61 V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~--SAHRt-p~~l~~~~~~~~~~g~~ViIAvAG~aAhL 127 (147)
+.-|.-..||++.+.++.+..++.|..+.+.+. .+.|. |+.+.++++.+.+-|++. |..+-..+.+
T Consensus 107 ~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~-i~l~DT~G~~ 175 (275)
T cd07937 107 IFRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADS-ICIKDMAGLL 175 (275)
T ss_pred EEEEeecCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCE-EEEcCCCCCC
Confidence 344455779999999999999999987776663 34554 788888998888888876 3555444443
No 189
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=64.67 E-value=24 Score=31.56 Aligned_cols=66 Identities=15% Similarity=0.126 Sum_probs=55.8
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCC
Q 032094 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (147)
Q Consensus 59 ~~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aA 125 (147)
..+.|++|-..---.-++..+.|+..|+ ...-+..-+=+-++++++.+.+...+.+++|++-|+..
T Consensus 31 ~~~lvv~g~~~~~~~~~~~~~~l~~~g~-~~~~~~~~~a~~~ev~~~~~~~~~~~~d~vIGVGGGk~ 96 (360)
T COG0371 31 SRALVVTGENTYAIAGEKVEKSLKDEGL-VVHVVFVGEASEEEVERLAAEAGEDGADVVIGVGGGKT 96 (360)
T ss_pred CceEEEEChhHHHHHHHHHHHHhcccCc-ceeeeecCccCHHHHHHHHHHhcccCCCEEEEecCcHH
Confidence 4689999999988888899999999998 55566668888999999988777677999999999864
No 190
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=64.35 E-value=32 Score=29.82 Aligned_cols=52 Identities=6% Similarity=0.081 Sum_probs=42.3
Q ss_pred CeEEEEecCCCCHH-HHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHh
Q 032094 59 PIVGIIMESDLDLP-VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAK 110 (147)
Q Consensus 59 ~~V~IimGS~SDl~-~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~ 110 (147)
.++.|..|.+.+-. +++...+.++++||.+++.-.+..-+.+++.+.++...
T Consensus 34 ~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~LN 86 (288)
T PRK14171 34 KLAIVLVGDNPASIIYVKNKIKNAHKIGIDTLLVNLSTTIHTNDLISKINELN 86 (288)
T ss_pred eEEEEEeCCCccHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHc
Confidence 47788888765544 45556889999999999999999999999999987653
No 191
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=64.18 E-value=21 Score=30.80 Aligned_cols=53 Identities=11% Similarity=0.075 Sum_probs=43.4
Q ss_pred CeEEEEecCCC-CHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhh
Q 032094 59 PIVGIIMESDL-DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE 111 (147)
Q Consensus 59 ~~V~IimGS~S-Dl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~ 111 (147)
.++.|..|.+. +.-+.+...+.++++||.+++.-.+..-+.+++.+.++...+
T Consensus 34 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~ 87 (285)
T PRK14189 34 GLAVILVGDNPASQVYVRNKVKACEDNGFHSLKDRYPADLSEAELLARIDELNR 87 (285)
T ss_pred eEEEEEeCCCchHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46777777654 456677788999999999999999999999999999976643
No 192
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=64.16 E-value=31 Score=28.81 Aligned_cols=52 Identities=8% Similarity=0.001 Sum_probs=44.0
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCC-hHHHHHHHHHHhhCCceEE
Q 032094 66 ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQN-CKEALSYALSAKERGIKII 117 (147)
Q Consensus 66 GS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRt-p~~l~~~~~~~~~~g~~Vi 117 (147)
-..+|++.+.++.+..++.|....+.+..+.|. |+.+.++++.+.+-|++.|
T Consensus 103 ~~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i 155 (266)
T cd07944 103 FHKHEFDEALPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVF 155 (266)
T ss_pred cccccHHHHHHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEE
Confidence 366899999999999999999988888888887 5888889988877788654
No 193
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=64.14 E-value=51 Score=27.95 Aligned_cols=66 Identities=14% Similarity=0.044 Sum_probs=52.0
Q ss_pred eEEEEecC-CCCHHHHHHHHHHHH-HhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCC
Q 032094 60 IVGIIMES-DLDLPVMNDAARTLS-DFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (147)
Q Consensus 60 ~V~IimGS-~SDl~~~~~a~~~L~-~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aA 125 (147)
.|.|--|. .|+..-.-+++..|+ ++|++.-.+++.-.|+..++.+++..+...|++=|.|..|-..
T Consensus 32 fvsvT~~~~~~~~~~t~~~~~~l~~~~g~~~i~Hltcr~~~~~~l~~~L~~~~~~Gi~niLal~GD~p 99 (281)
T TIGR00677 32 FIDITWGAGGTTAELTLTIASRAQNVVGVETCMHLTCTNMPIEMIDDALERAYSNGIQNILALRGDPP 99 (281)
T ss_pred EEEeccCCCCcchhhHHHHHHHHHHhcCCCeeEEeccCCCCHHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence 46666555 455555555555555 7899999999999999999999998888899999999988764
No 194
>PTZ00062 glutaredoxin; Provisional
Probab=64.05 E-value=47 Score=27.14 Aligned_cols=58 Identities=12% Similarity=0.053 Sum_probs=36.1
Q ss_pred eEEEEecCC---CCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCC-ceEEEE
Q 032094 60 IVGIIMESD---LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERG-IKIIIV 119 (147)
Q Consensus 60 ~V~IimGS~---SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g-~~ViIA 119 (147)
.|.|+|=|+ +.=+.|+++.+.|++.||+|+..=+. ..++....+.+...... ..|||-
T Consensus 114 ~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~--~d~~~~~~l~~~sg~~TvPqVfI~ 175 (204)
T PTZ00062 114 KILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIF--EDPDLREELKVYSNWPTYPQLYVN 175 (204)
T ss_pred CEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcC--CCHHHHHHHHHHhCCCCCCeEEEC
Confidence 578888654 46788889999999999998744333 33433333333222222 367765
No 195
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=63.83 E-value=52 Score=28.62 Aligned_cols=67 Identities=22% Similarity=0.305 Sum_probs=40.4
Q ss_pred CCCeEEEEe-cCCC------CHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCC
Q 032094 57 DAPIVGIIM-ESDL------DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (147)
Q Consensus 57 ~~~~V~Iim-GS~S------Dl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aA 125 (147)
.+++|+||. |+.- |.. ..-....|+++|+.......-.| .++.+.+.++.+..+|.+++|.-.|.+.
T Consensus 158 r~~rv~II~TG~Ev~~G~i~D~~-~~~l~~~L~~~G~~v~~~~iv~D-d~~~I~~ai~~~~~~g~DlIItTGGtsv 231 (312)
T cd03522 158 RPLRVGLIVTGSEVYGGRIEDKF-GPVLRARLAALGVELVEQVIVPH-DEAAIAAAIAEALEAGAELLILTGGASV 231 (312)
T ss_pred CCCEEEEEEcCCcCCCCcEEEhH-HHHHHHHHHHCCCEEEEEEEcCC-CHHHHHHHHHHHhcCCCCEEEEeCCccc
Confidence 447899986 5521 221 12344568899986544333233 3455666665555567899999888764
No 196
>PLN02204 diacylglycerol kinase
Probab=63.54 E-value=50 Score=31.63 Aligned_cols=101 Identities=6% Similarity=-0.045 Sum_probs=61.7
Q ss_pred eeeecCChHHHhhcccccccccCCCcccccCCCCCCCCCCCeEEEE----ecCCCCHHHHHHHHHHHHHhCCCeEEEEEc
Q 032094 19 IPVLASSNGSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGII----MESDLDLPVMNDAARTLSDFGVPYEIKILP 94 (147)
Q Consensus 19 itVta~~l~~~k~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~V~Ii----mGS~SDl~~~~~a~~~L~~fGI~~ev~V~S 94 (147)
.|+-.++.+.|+.=++.+.+.+.. ....+.++.|| .|........+++..+|+..|+.+++.++-
T Consensus 131 ~~f~~~d~~~~~~w~~~l~~~l~~-----------~~~r~k~llVivNP~sGkg~~~~~~~~V~p~f~~a~i~~~v~~T~ 199 (601)
T PLN02204 131 YTFGHKDLQTCQSWVDRLNASLNK-----------EVGRPKNLLVFVHPLSGKGSGSRTWETVSPIFIRAKVKTKVIVTE 199 (601)
T ss_pred EeecCCCHHHHHHHHHHHHHHHhh-----------ccCCCceEEEEECCCCCCcchHHHHHHHHHHHHHcCCeEEEEEec
Confidence 344456666776655555444432 11122344444 477777788889999999999998888875
Q ss_pred CCCChHHHHHHHHHH---hhCCceEEEEecCCCCchhhhhhcc
Q 032094 95 PHQNCKEALSYALSA---KERGIKIIIVGDGVEAHLSGTCSCC 134 (147)
Q Consensus 95 AHRtp~~l~~~~~~~---~~~g~~ViIAvAG~aAhLpGvvAg~ 134 (147)
.- ....++++.+ +..+++.|||+ |+.+-+--|+-|+
T Consensus 200 ~a---ghA~d~~~~~~~~~l~~~D~VVaV-GGDGt~nEVlNGL 238 (601)
T PLN02204 200 RA---GHAFDVMASISNKELKSYDGVIAV-GGDGFFNEILNGY 238 (601)
T ss_pred Cc---chHHHHHHHHhhhhccCCCEEEEE-cCccHHHHHHHHH
Confidence 33 3334444332 24567877765 7777666666555
No 197
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=63.35 E-value=31 Score=29.79 Aligned_cols=52 Identities=17% Similarity=0.195 Sum_probs=43.0
Q ss_pred CeEEEEecCCCC-HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHh
Q 032094 59 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAK 110 (147)
Q Consensus 59 ~~V~IimGS~SD-l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~ 110 (147)
.++.|+.|.+.| .-+++.-.+.++++||.+++.-.++.-+-+++.+.++...
T Consensus 32 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN 84 (282)
T PRK14169 32 TLAVVLVGSDPASEVYVRNKQRRAEDIGVRSLMFRLPEATTQADLLAKVAELN 84 (282)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 478888887654 4566677888999999999999999999999999987653
No 198
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=63.33 E-value=12 Score=32.39 Aligned_cols=35 Identities=20% Similarity=0.163 Sum_probs=26.2
Q ss_pred EEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCchhh
Q 032094 90 IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG 129 (147)
Q Consensus 90 v~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLpG 129 (147)
-.|...|...+.+.++.+. .+++|+++|...-+.+
T Consensus 182 AtVti~hs~T~~l~~~~~~-----ADIvV~AvGkp~~i~~ 216 (281)
T PRK14183 182 ATVDICHIFTKDLKAHTKK-----ADIVIVGVGKPNLITE 216 (281)
T ss_pred CEEEEeCCCCcCHHHHHhh-----CCEEEEecCcccccCH
Confidence 4556668777777777653 6999999999887763
No 199
>PRK13761 hypothetical protein; Provisional
Probab=63.32 E-value=23 Score=30.38 Aligned_cols=64 Identities=16% Similarity=0.188 Sum_probs=45.4
Q ss_pred EecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCchhhhh
Q 032094 64 IMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGTC 131 (147)
Q Consensus 64 imGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLpGvv 131 (147)
+=|.+.=| .-+++.+.-+..|-+.||.. .|||+++...+.+..+..|.+.+...-- ...+||.=
T Consensus 74 VNGN~AAL-~p~eiveLa~~~~A~iEVNL--F~RT~eR~~~I~~~l~~~Ga~~vlG~~~-~~~ip~L~ 137 (248)
T PRK13761 74 VNGNTAAL-VPEEIVELAEALNAKLEVNL--FYRTEERVEKIAEVLREHGAKEVLGTDE-DARIPGLD 137 (248)
T ss_pred EcchHHhh-ChHHHHHHHHHhCCCEEEEe--ccCCHHHHHHHHHHHHHcCCceeeCCCC-cCcCCCCC
Confidence 34443333 34567777788888877665 7999999999999999999986554432 67777654
No 200
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=63.22 E-value=21 Score=24.75 Aligned_cols=59 Identities=12% Similarity=0.046 Sum_probs=38.8
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecC
Q 032094 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 122 (147)
Q Consensus 60 ~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG 122 (147)
..++++=-+-.......+..+|+++|++..+-|++-+ .++-.+.++...++|. =|+.=|
T Consensus 6 ~~v~ltfDdg~~~~~~~~~~~l~~~~i~at~fv~~~~--~~~~~~~l~~l~~~G~--ei~~H~ 64 (123)
T PF01522_consen 6 KSVALTFDDGYRDNYDRLLPLLKKYGIPATFFVIGSW--VERYPDQLRELAAAGH--EIGNHG 64 (123)
T ss_dssp SEEEEEEESHCHTHHHHHHHHHHHTT--EEEEE-HHH--HHHHHHHHHHHHHTT---EEEEE-
T ss_pred CEEEEEEecCchhhHHHHHHHHHhcccceeeeecccc--cccccccchhHHHHHH--HHHhcC
Confidence 4555555555578889999999999999999999875 5555566666767773 344444
No 201
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=63.08 E-value=11 Score=32.72 Aligned_cols=34 Identities=15% Similarity=0.165 Sum_probs=25.7
Q ss_pred EEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCchh
Q 032094 90 IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS 128 (147)
Q Consensus 90 v~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLp 128 (147)
.+|...|.....+.++.++ .+++|+++|...-+.
T Consensus 184 ATVtichs~T~~L~~~~~~-----ADIvV~AvGkp~~i~ 217 (288)
T PRK14171 184 CSVTICHSKTHNLSSITSK-----ADIVVAAIGSPLKLT 217 (288)
T ss_pred CEEEEeCCCCCCHHHHHhh-----CCEEEEccCCCCccC
Confidence 5677778666667777653 699999999987655
No 202
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=63.02 E-value=31 Score=29.93 Aligned_cols=52 Identities=15% Similarity=0.190 Sum_probs=43.5
Q ss_pred CeEEEEecCCCC-HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHh
Q 032094 59 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAK 110 (147)
Q Consensus 59 ~~V~IimGS~SD-l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~ 110 (147)
.++.|+.|.+.| .-+.+...+.++++||.+++.-.+.--+.+++.+.++...
T Consensus 33 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN 85 (295)
T PRK14174 33 GLTVIIVGEDPASQVYVRNKAKSCKEIGMNSTVIELPADTTEEHLLKKIEDLN 85 (295)
T ss_pred eEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 578888887754 5566777889999999999999999999999999997663
No 203
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=62.88 E-value=71 Score=24.86 Aligned_cols=62 Identities=15% Similarity=0.273 Sum_probs=40.8
Q ss_pred eEEEEecCCCCH---HHHHHHHHHHHHh-CCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCC
Q 032094 60 IVGIIMESDLDL---PVMNDAARTLSDF-GVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV 123 (147)
Q Consensus 60 ~V~IimGS~SDl---~~~~~a~~~L~~f-GI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~ 123 (147)
+|+++.++-+|. ...+.+.+.+++. |+ ++-+......++...++++..-.++++.||.....
T Consensus 1 ~ig~~~~~~~~~~~~~~~~~i~~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~ 66 (270)
T cd06308 1 VIGFSQCNLADPWRAAMNDEIQREASNYPDV--ELIIADAADDNSKQVADIENFIRQGVDLLIISPNE 66 (270)
T ss_pred CEEEEeeCCCCHHHHHHHHHHHHHHHhcCCc--EEEEEcCCCCHHHHHHHHHHHHHhCCCEEEEecCc
Confidence 367777776762 3344555566665 54 45555666778877888877777788877776543
No 204
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=62.73 E-value=10 Score=32.71 Aligned_cols=35 Identities=11% Similarity=0.183 Sum_probs=25.6
Q ss_pred EEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCchhh
Q 032094 90 IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG 129 (147)
Q Consensus 90 v~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLpG 129 (147)
.+|...|+..+.+.++.++ .+++|+++|...-+.+
T Consensus 183 atVt~~hs~t~~l~~~~~~-----ADIVV~avG~~~~i~~ 217 (285)
T PRK14189 183 ATVTICHSKTRDLAAHTRQ-----ADIVVAAVGKRNVLTA 217 (285)
T ss_pred CEEEEecCCCCCHHHHhhh-----CCEEEEcCCCcCccCH
Confidence 4566678777777777653 6999999998765554
No 205
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=62.55 E-value=61 Score=26.59 Aligned_cols=37 Identities=19% Similarity=0.311 Sum_probs=24.9
Q ss_pred CCeEEEEecCCCCHHHHHHHHHHHHHhCCC-eEEEEEcCC
Q 032094 58 APIVGIIMESDLDLPVMNDAARTLSDFGVP-YEIKILPPH 96 (147)
Q Consensus 58 ~~~V~IimGS~SDl~~~~~a~~~L~~fGI~-~ev~V~SAH 96 (147)
.|.++.|+|+ |.+...++++.+.+.|++ .|+.+.++|
T Consensus 99 ~pvi~si~g~--~~~~~~~~a~~~~~~G~d~ielN~~cP~ 136 (289)
T cd02810 99 QPLIASVGGS--SKEDYVELARKIERAGAKALELNLSCPN 136 (289)
T ss_pred CeEEEEeccC--CHHHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence 3566677776 555666777777777776 667666654
No 206
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=62.38 E-value=45 Score=23.65 Aligned_cols=36 Identities=17% Similarity=0.105 Sum_probs=28.0
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCC
Q 032094 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQ 97 (147)
Q Consensus 60 ~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHR 97 (147)
.|.|.+ .+.=|.|.++.+.|+++||+|++.-+.-+-
T Consensus 9 ~Vvvys--k~~Cp~C~~ak~~L~~~~i~~~~vdid~~~ 44 (99)
T TIGR02189 9 AVVIFS--RSSCCMCHVVKRLLLTLGVNPAVHEIDKEP 44 (99)
T ss_pred CEEEEE--CCCCHHHHHHHHHHHHcCCCCEEEEcCCCc
Confidence 355554 477899999999999999999876665443
No 207
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=62.33 E-value=33 Score=29.68 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=42.9
Q ss_pred CeEEEEecCC-CCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHh
Q 032094 59 PIVGIIMESD-LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAK 110 (147)
Q Consensus 59 ~~V~IimGS~-SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~ 110 (147)
.++.|..|.+ ++.-+.+...+.++++||.+++.-.++.-+.+++.+.++...
T Consensus 33 ~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN 85 (285)
T PRK14191 33 KLAVILVGKDPASQTYVNMKIKACERVGMDSDLHTLQENTTEAELLSLIKDLN 85 (285)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4667777755 456677788889999999999999999999999999997664
No 208
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=62.31 E-value=26 Score=22.64 Aligned_cols=53 Identities=25% Similarity=0.229 Sum_probs=36.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCC--eEEEEEcCCCChHHHHHHHHHH-hh-CCceEEEE
Q 032094 67 SDLDLPVMNDAARTLSDFGVP--YEIKILPPHQNCKEALSYALSA-KE-RGIKIIIV 119 (147)
Q Consensus 67 S~SDl~~~~~a~~~L~~fGI~--~ev~V~SAHRtp~~l~~~~~~~-~~-~g~~ViIA 119 (147)
+.+.=|.|.++...|++++++ |++--+......+.+.+++... .. .-..+||.
T Consensus 5 ~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~ 61 (84)
T TIGR02180 5 SKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFIN 61 (84)
T ss_pred ECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEEC
Confidence 356779999999999999999 7766666666666666655332 22 22356553
No 209
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=62.27 E-value=10 Score=33.76 Aligned_cols=52 Identities=17% Similarity=0.224 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhCCCeE-------------------------EEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCch
Q 032094 73 VMNDAARTLSDFGVPYE-------------------------IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL 127 (147)
Q Consensus 73 ~~~~a~~~L~~fGI~~e-------------------------v~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhL 127 (147)
+...+.++|+.+||+.+ .+|...|.....+.++.++ .+|+|+++|...-+
T Consensus 197 Tp~avi~LL~~~~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T~nl~~~~~~-----ADIvIsAvGkp~~v 271 (345)
T PLN02897 197 TPKGCVELLIRSGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFTKDPEQITRK-----ADIVIAAAGIPNLV 271 (345)
T ss_pred CHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCCCCHHHHHhh-----CCEEEEccCCcCcc
Confidence 45667778888887532 4677778777777777653 69999999998876
Q ss_pred hh
Q 032094 128 SG 129 (147)
Q Consensus 128 pG 129 (147)
.+
T Consensus 272 ~~ 273 (345)
T PLN02897 272 RG 273 (345)
T ss_pred CH
Confidence 54
No 210
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=62.18 E-value=12 Score=32.32 Aligned_cols=35 Identities=14% Similarity=0.229 Sum_probs=26.7
Q ss_pred EEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCchhh
Q 032094 90 IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG 129 (147)
Q Consensus 90 v~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLpG 129 (147)
.+|...|..+..+.++.++ .+++|+++|...-+.+
T Consensus 185 atVtvchs~T~~l~~~~k~-----ADIvV~AvGkp~~i~~ 219 (284)
T PRK14193 185 ATVTLCHTGTRDLAAHTRR-----ADIIVAAAGVAHLVTA 219 (284)
T ss_pred CEEEEeCCCCCCHHHHHHh-----CCEEEEecCCcCccCH
Confidence 4577778777778777754 6999999999876554
No 211
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=62.04 E-value=23 Score=29.31 Aligned_cols=33 Identities=12% Similarity=0.081 Sum_probs=21.0
Q ss_pred CeEEEEecCCCCH-HHHHHHHHHHHHhCCCeEEEE
Q 032094 59 PIVGIIMESDLDL-PVMNDAARTLSDFGVPYEIKI 92 (147)
Q Consensus 59 ~~V~IimGS~SDl-~~~~~a~~~L~~fGI~~ev~V 92 (147)
+.|.|.+|+ ||. ....++.+.|.++.-++++.|
T Consensus 171 ~~iLi~~GG-~d~~~~~~~~l~~l~~~~~~~~i~v 204 (279)
T TIGR03590 171 RRVLVSFGG-ADPDNLTLKLLSALAESQINISITL 204 (279)
T ss_pred CeEEEEeCC-cCCcCHHHHHHHHHhccccCceEEE
Confidence 468777775 554 456777888877654444443
No 212
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=62.02 E-value=73 Score=24.69 Aligned_cols=59 Identities=14% Similarity=0.164 Sum_probs=39.4
Q ss_pred EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEec
Q 032094 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (147)
Q Consensus 61 V~IimGS~SD---l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvA 121 (147)
|++|..+.+| ..+.+.+.+.++++|+.+. +......++...++++..-.++++.||..+
T Consensus 2 igvi~p~~~~~~~~~~~~g~~~~a~~~g~~~~--~~~~~~~~~~~~~~i~~~~~~~vdgii~~~ 63 (268)
T cd06270 2 IGLVVSDLDGPFFGPLLSGVESVARKAGKHLI--ITAGHHSAEKEREAIEFLLERRCDALILHS 63 (268)
T ss_pred EEEEEccccCcchHHHHHHHHHHHHHCCCEEE--EEeCCCchHHHHHHHHHHHHcCCCEEEEec
Confidence 5666655444 2455666777888887554 444555677777888777778898888864
No 213
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=61.99 E-value=73 Score=24.77 Aligned_cols=61 Identities=20% Similarity=0.262 Sum_probs=40.2
Q ss_pred EEEEec---CCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCC
Q 032094 61 VGIIME---SDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV 123 (147)
Q Consensus 61 V~IimG---S~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~ 123 (147)
|+|+.. +.......+.+.+.++++|.. +-+......+++..+.++.....+++-+|...+.
T Consensus 2 Igvv~~~~~~~~~~~~~~~i~~~a~~~g~~--~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~ 65 (269)
T cd06281 2 IGCLVSDITNPLLAQLFSGAEDRLRAAGYS--LLIANSLNDPERELEILRSFEQRRMDGIIIAPGD 65 (269)
T ss_pred EEEEecCCccccHHHHHHHHHHHHHHcCCE--EEEEeCCCChHHHHHHHHHHHHcCCCEEEEecCC
Confidence 455554 333455566777788888754 4455556678877787777777778877776543
No 214
>PRK10824 glutaredoxin-4; Provisional
Probab=61.86 E-value=56 Score=24.45 Aligned_cols=58 Identities=14% Similarity=0.045 Sum_probs=36.1
Q ss_pred eEEEEecCCC---CHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhh--CCceEEEEe
Q 032094 60 IVGIIMESDL---DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE--RGIKIIIVG 120 (147)
Q Consensus 60 ~V~IimGS~S---Dl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~--~g~~ViIAv 120 (147)
.|.|+|=|+- ==|+|.+|.++|+.+|++|..--+- ..++ +.+.++.... --..|||-+
T Consensus 16 ~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~--~d~~-~~~~l~~~sg~~TVPQIFI~G 78 (115)
T PRK10824 16 PILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDIL--QNPD-IRAELPKYANWPTFPQLWVDG 78 (115)
T ss_pred CEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEec--CCHH-HHHHHHHHhCCCCCCeEEECC
Confidence 5778876653 4578999999999999998743332 3454 4444433222 123777743
No 215
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=61.66 E-value=44 Score=28.38 Aligned_cols=67 Identities=15% Similarity=0.081 Sum_probs=46.5
Q ss_pred eEEEEecCCC----CHHHHHHHHHHHHHhCCCeEEEEEc-------CCCChHHHHHHHHHHhhCCceEEEEecCCCCc
Q 032094 60 IVGIIMESDL----DLPVMNDAARTLSDFGVPYEIKILP-------PHQNCKEALSYALSAKERGIKIIIVGDGVEAH 126 (147)
Q Consensus 60 ~V~IimGS~S----Dl~~~~~a~~~L~~fGI~~ev~V~S-------AHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAh 126 (147)
+|+||.=|.. +.+..+.+.+.|+.+|....+.=.. |.-.-+|..++.+...+..++.|+++-|+-+.
T Consensus 2 ~I~ivAPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~~~~Ra~dL~~a~~Dp~i~aI~~~rGG~g~ 79 (308)
T cd07062 2 TIAVVSPSSGIPGELPHRLERAKKRLENLGFEVVEGPNALKGDKYLSASPEERAEELMAAFADPSIKAIIPTIGGDDS 79 (308)
T ss_pred eEEEEeCCCCCcccCHHHHHHHHHHHHhCCCEEEEecccccccccccCCHHHHHHHHHHHhcCCCCCEEEECCcccCH
Confidence 4666655532 3688999999999998864433221 11234577778777788889999999998654
No 216
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=61.61 E-value=14 Score=31.87 Aligned_cols=51 Identities=14% Similarity=0.199 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhCCCeE-------------------------EEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCch
Q 032094 73 VMNDAARTLSDFGVPYE-------------------------IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL 127 (147)
Q Consensus 73 ~~~~a~~~L~~fGI~~e-------------------------v~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhL 127 (147)
+...+.++|+.+||+.+ -+|+..|.....+.++.++ .+++|+++|...-+
T Consensus 141 Tp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t~~l~~~~~~-----ADIvI~AvG~p~~i 215 (284)
T PRK14190 141 TPHGILELLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKTKNLAELTKQ-----ADILIVAVGKPKLI 215 (284)
T ss_pred CHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCchhHHHHHHh-----CCEEEEecCCCCcC
Confidence 45566777777777542 5666778888878777653 69999999988754
Q ss_pred h
Q 032094 128 S 128 (147)
Q Consensus 128 p 128 (147)
.
T Consensus 216 ~ 216 (284)
T PRK14190 216 T 216 (284)
T ss_pred C
Confidence 4
No 217
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=61.50 E-value=22 Score=25.65 Aligned_cols=38 Identities=16% Similarity=0.160 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEcCCC-ChHHHHHHHHH
Q 032094 71 LPVMNDAARTLSDFGVPYEIKILPPHQ-NCKEALSYALS 108 (147)
Q Consensus 71 l~~~~~a~~~L~~fGI~~ev~V~SAHR-tp~~l~~~~~~ 108 (147)
=+.|++|.+.|++.||+|+..=+.... +.+++.++.+.
T Consensus 9 C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~~~~~ 47 (111)
T cd03036 9 CSTCRKAKKWLDEHGVDYTAIDIVEEPPSKEELKKWLEK 47 (111)
T ss_pred CHHHHHHHHHHHHcCCceEEecccCCcccHHHHHHHHHH
Confidence 478999999999999999977665444 45666666654
No 218
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=61.42 E-value=58 Score=28.33 Aligned_cols=63 Identities=10% Similarity=0.008 Sum_probs=48.8
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCC-hHHHHHHHHHHhhCCceEEEEecCCCC
Q 032094 61 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQN-CKEALSYALSAKERGIKIIIVGDGVEA 125 (147)
Q Consensus 61 V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRt-p~~l~~~~~~~~~~g~~ViIAvAG~aA 125 (147)
|-|.. +.+|.+..++..+..+++|....+.+.-+||. |+++.++++.+.+-|++.| .++-..+
T Consensus 104 iri~~-~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i-~i~DT~G 167 (333)
T TIGR03217 104 VRVAT-HCTEADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCV-YIVDSAG 167 (333)
T ss_pred EEEEe-ccchHHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEE-EEccCCC
Confidence 44444 67888899999999999999888888888976 5788888888888888765 4444433
No 219
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=61.37 E-value=40 Score=29.22 Aligned_cols=52 Identities=17% Similarity=0.190 Sum_probs=43.5
Q ss_pred CeEEEEecCC-CCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHh
Q 032094 59 PIVGIIMESD-LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAK 110 (147)
Q Consensus 59 ~~V~IimGS~-SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~ 110 (147)
.++.|+.|.+ ++.-+++...+.++++||.+++...+..-+.+++.+.++...
T Consensus 40 ~Laii~vg~d~aS~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~LN 92 (287)
T PRK14176 40 GLATILVGDDPASKMYVRLKHKACERVGIRAEDQFLPADTTQEELLELIDSLN 92 (287)
T ss_pred eEEEEEECCCcchHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4677777865 456677788899999999999999999999999999997663
No 220
>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial. This family consists of repressors of the LacI family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gammaproteobacteria and does not include the GntR family TreR of Bacillus subtilis
Probab=61.34 E-value=60 Score=26.30 Aligned_cols=90 Identities=9% Similarity=-0.012 Sum_probs=55.0
Q ss_pred HHHhhcccccccccCCCcccccCCCCCCCCCCCeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHH
Q 032094 27 GSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEAL 103 (147)
Q Consensus 27 ~~~k~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~SD---l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~ 103 (147)
++-+++....++++......... .........|+++....++ ...++.+.+.+++.| |++-+...+..+++..
T Consensus 30 ~~tr~rV~~~a~~lgY~pn~~a~--~l~~~~~~~Ig~i~~~~~~~~~~~~~~~i~~~~~~~g--y~~~i~~~~~~~~~~~ 105 (311)
T TIGR02405 30 IETRERVEQVIQQSGFVPSKSAR--AMRGGSDKVVAVIVSRLDSPSENLAVSGMLPVFYTAG--YDPIIMESQFSPQLTN 105 (311)
T ss_pred HHHHHHHHHHHHHHCCCcCHHHH--HhhcCCCCEEEEEeCCcccccHHHHHHHHHHHHHHCC--CeEEEecCCCChHHHH
Confidence 34456666666666542100000 1112234579999864333 335667777788887 4566667788898888
Q ss_pred HHHHHHhhCCceEEEEe
Q 032094 104 SYALSAKERGIKIIIVG 120 (147)
Q Consensus 104 ~~~~~~~~~g~~ViIAv 120 (147)
++++......++-+|..
T Consensus 106 ~~~~~l~~~~vdGvIi~ 122 (311)
T TIGR02405 106 EHLSVLQKRNVDGVILF 122 (311)
T ss_pred HHHHHHHhcCCCEEEEe
Confidence 88877766677766665
No 221
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=61.19 E-value=14 Score=31.05 Aligned_cols=76 Identities=9% Similarity=0.070 Sum_probs=46.5
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEE-EcCCCChHHHHHHHHHHhhCCceEEEEecCCC-Cchhhhhhccc
Q 032094 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKI-LPPHQNCKEALSYALSAKERGIKIIIVGDGVE-AHLSGTCSCCK 135 (147)
Q Consensus 60 ~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V-~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~a-AhLpGvvAg~T 135 (147)
++.||+|...--...++..+.|+..|+++.+-. ....=+-+.+.++.+..+..+.+++|++-|+. .=+.=.+|..+
T Consensus 21 ~~lvv~d~~t~~~~g~~v~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vGgG~i~D~~K~~A~~~ 98 (250)
T PF13685_consen 21 KVLVVTDENTYKAAGEKVEESLKSAGIEVAVIEEFVGDADEDEVEKLVEALRPKDADLIIGVGGGTIIDIAKYAAFEL 98 (250)
T ss_dssp EEEEEEETTHHHHHHHHHHHHHHTTT-EEEEEE-EE---BHHHHHHHHTTS--TT--EEEEEESHHHHHHHHHHHHHH
T ss_pred cEEEEEcCCHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHHhcccCCCEEEEeCCcHHHHHHHHHHHhc
Confidence 799999998877778889999999999877322 11222455566676666556789999987763 23333444333
No 222
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=61.18 E-value=14 Score=23.59 Aligned_cols=36 Identities=11% Similarity=0.096 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHH
Q 032094 72 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYAL 107 (147)
Q Consensus 72 ~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~ 107 (147)
+.+.++...|++.|++|++..+..........+|.+
T Consensus 10 ~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~ 45 (74)
T cd03045 10 PPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLK 45 (74)
T ss_pred CcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHh
Confidence 567889999999999999887765444333344443
No 223
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=61.14 E-value=33 Score=29.71 Aligned_cols=52 Identities=12% Similarity=0.185 Sum_probs=42.8
Q ss_pred CeEEEEecCCCC-HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHh
Q 032094 59 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAK 110 (147)
Q Consensus 59 ~~V~IimGS~SD-l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~ 110 (147)
.++.|+.|.+.+ .-+++...+.++++||.+++.-.+..-+.+++.+.++...
T Consensus 28 ~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN 80 (287)
T PRK14181 28 GLAVVLIGNDPASEVYVGMKVKKATDLGMVSKAHRLPSDATLSDILKLIHRLN 80 (287)
T ss_pred cEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 477888886654 4566777888999999999999999999999999997663
No 224
>PRK09526 lacI lac repressor; Reviewed
Probab=61.10 E-value=51 Score=26.82 Aligned_cols=90 Identities=6% Similarity=-0.021 Sum_probs=52.0
Q ss_pred HHHhhcccccccccCCCcccccCCCCCCCCCCCeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEcCC-CChHHH
Q 032094 27 GSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPH-QNCKEA 102 (147)
Q Consensus 27 ~~~k~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~SD---l~~~~~a~~~L~~fGI~~ev~V~SAH-Rtp~~l 102 (147)
++.+++...+++++......... .........|++++.+.++ ....+.+.+.++++|... .+.... -.++..
T Consensus 34 ~~tr~rV~~~a~elgY~pn~~a~--~l~~~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~--~i~~~~~~~~~~~ 109 (342)
T PRK09526 34 AKTREKVEAAMAELNYVPNRVAQ--QLAGKQSLTIGLATTSLALHAPSQIAAAIKSRADQLGYSV--VISMVERSGVEAC 109 (342)
T ss_pred HHHHHHHHHHHHHHCCCcCHHHH--HhhcCCCceEEEEeCCCCcccHHHHHHHHHHHHHHCCCEE--EEEeCCCChHHHH
Confidence 45666666667666553110000 1122234579999986544 234566677788888654 443333 345666
Q ss_pred HHHHHHHhhCCceEEEEe
Q 032094 103 LSYALSAKERGIKIIIVG 120 (147)
Q Consensus 103 ~~~~~~~~~~g~~ViIAv 120 (147)
.++++....++++-||..
T Consensus 110 ~~~l~~l~~~~vdGiii~ 127 (342)
T PRK09526 110 QAAVNELLAQRVSGVIIN 127 (342)
T ss_pred HHHHHHHHhcCCCEEEEe
Confidence 677776767778777764
No 225
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=60.96 E-value=27 Score=30.15 Aligned_cols=63 Identities=10% Similarity=0.046 Sum_probs=44.5
Q ss_pred eEEEEecCCC-CHHHHHHHHHHHHHhCCCeEEEEE---cCCCChHHHHHHHHHHhhCC--ceEEEEecCCCCc
Q 032094 60 IVGIIMESDL-DLPVMNDAARTLSDFGVPYEIKIL---PPHQNCKEALSYALSAKERG--IKIIIVGDGVEAH 126 (147)
Q Consensus 60 ~V~IimGS~S-Dl~~~~~a~~~L~~fGI~~ev~V~---SAHRtp~~l~~~~~~~~~~g--~~ViIAvAG~aAh 126 (147)
+|.|++|... ++...++..+.|+.. ++.+. -.+-+.+.+.+.++.+...+ +++|||+-|+|..
T Consensus 25 r~lvVtd~~~~~~g~~~~v~~~L~~~----~~~~~~~v~~~pt~~~v~~~~~~~~~~~~~~D~IIaiGGGSvi 93 (355)
T TIGR03405 25 RVVVVTFPEARALGLARRLEALLGGR----LAALIDDVAPNPDVAQLDGLYARLWGDEGACDLVIALGGGSVI 93 (355)
T ss_pred eEEEEECcchhhcchHHHHHHHhccC----cEEEeCCCCCCcCHHHHHHHHHHHHhcCCCCCEEEEeCCccHH
Confidence 6888887643 245667777777643 23333 36778888888887776666 9999999999864
No 226
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=60.95 E-value=56 Score=26.14 Aligned_cols=15 Identities=27% Similarity=0.093 Sum_probs=7.2
Q ss_pred HHHHHHHhCCCeEEE
Q 032094 77 AARTLSDFGVPYEIK 91 (147)
Q Consensus 77 a~~~L~~fGI~~ev~ 91 (147)
..+.|.+.|++++++
T Consensus 153 ~i~~l~~~g~~v~i~ 167 (246)
T PRK11145 153 FARYLAKRNQKTWIR 167 (246)
T ss_pred HHHHHHhCCCcEEEE
Confidence 334445555555544
No 227
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=60.81 E-value=35 Score=29.52 Aligned_cols=52 Identities=13% Similarity=0.222 Sum_probs=43.4
Q ss_pred CeEEEEecCCCC-HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHh
Q 032094 59 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAK 110 (147)
Q Consensus 59 ~~V~IimGS~SD-l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~ 110 (147)
.++.|+.|.+.+ .-+.+...+.++++||.+++...+..-+.+++.+.++...
T Consensus 31 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN 83 (287)
T PRK14173 31 HLRVVRLGEDPASVSYVRLKDRQAKALGLRSQVEVLPESTSQEELLELIARLN 83 (287)
T ss_pred cEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 578888887755 4566777889999999999999999999999999987653
No 228
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=60.79 E-value=39 Score=29.17 Aligned_cols=52 Identities=17% Similarity=0.163 Sum_probs=42.3
Q ss_pred CeEEEEecCCCCH-HHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHh
Q 032094 59 PIVGIIMESDLDL-PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAK 110 (147)
Q Consensus 59 ~~V~IimGS~SDl-~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~ 110 (147)
.++.|..|.+.|- -+++...+.++++||.+++.-.+..-+.+++.+.++...
T Consensus 34 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN 86 (284)
T PRK14179 34 GLVVILVGDNPASQVYVRNKERSALAAGFKSEVVRLPETISQEELLDLIERYN 86 (284)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4778888877654 455556789999999999999999999999999987663
No 229
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=60.57 E-value=25 Score=30.44 Aligned_cols=51 Identities=10% Similarity=0.135 Sum_probs=42.1
Q ss_pred CeEEEEecCCCC-HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHH
Q 032094 59 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSA 109 (147)
Q Consensus 59 ~~V~IimGS~SD-l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~ 109 (147)
.++.|..|.+.+ .-+.+...+.++++||.+++.-.+..-+.+++.+.++..
T Consensus 33 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~l 84 (284)
T PRK14170 33 GLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPENVTEEKLLSVVEEL 84 (284)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 478888886654 556677788899999999999999999999999988765
No 230
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=60.51 E-value=46 Score=29.54 Aligned_cols=76 Identities=14% Similarity=0.195 Sum_probs=51.2
Q ss_pred CeEEEEecCCCCH---HHHHHHHHHHHHhCCCeEEE--E--Ec---CCCC-hHHHHHHHHHHhhCCce---EEEEecCCC
Q 032094 59 PIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIK--I--LP---PHQN-CKEALSYALSAKERGIK---IIIVGDGVE 124 (147)
Q Consensus 59 ~~V~IimGS~SDl---~~~~~a~~~L~~fGI~~ev~--V--~S---AHRt-p~~l~~~~~~~~~~g~~---ViIAvAG~a 124 (147)
.++.||+...-.- +..++....|+.-|+++++. + .. .++. ++.+.++.+.+.+.+++ ++||+-|++
T Consensus 31 ~r~lvVtD~~v~~~~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~ge~~k~~~~~v~~i~~~l~~~~~~r~~~IIalGGG~ 110 (369)
T cd08198 31 PKVLVVIDSGVAQANPQLASDIQAYAAAHADALRLVAPPHIVPGGEACKNDPDLVEALHAAINRHGIDRHSYVIAIGGGA 110 (369)
T ss_pred CeEEEEECcchHHhhhhHHHHHHHHHHhcCCceeeeeeeEecCCCccCCChHHHHHHHHHHHHHcCCCcCcEEEEECChH
Confidence 3688888765543 44577777888778765522 2 11 3455 36677777777777776 999999885
Q ss_pred -Cchhhhhhcc
Q 032094 125 -AHLSGTCSCC 134 (147)
Q Consensus 125 -AhLpGvvAg~ 134 (147)
.=++|.+|+.
T Consensus 111 v~D~ag~vA~~ 121 (369)
T cd08198 111 VLDAVGYAAAT 121 (369)
T ss_pred HHHHHHHHHHH
Confidence 4577787763
No 231
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=60.41 E-value=34 Score=29.57 Aligned_cols=52 Identities=12% Similarity=0.127 Sum_probs=42.8
Q ss_pred CeEEEEecCCCC-HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHh
Q 032094 59 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAK 110 (147)
Q Consensus 59 ~~V~IimGS~SD-l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~ 110 (147)
.++.|..|.+.+ .-+.+...+.++++||.+++...+..-+.+++.+.++...
T Consensus 34 ~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~el~~~I~~lN 86 (284)
T PRK14193 34 GLGTVLVGDDPGSQAYVRGKHRDCAEVGITSIRRDLPADATQEELNAVIDELN 86 (284)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 467777786654 4566777888999999999999999999999999987663
No 232
>PHA03050 glutaredoxin; Provisional
Probab=60.38 E-value=44 Score=24.34 Aligned_cols=58 Identities=19% Similarity=0.234 Sum_probs=35.2
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhCC---CeEEEEEcC-CCChHHHHHHHHHHhhCC-ceEEEE
Q 032094 60 IVGIIMESDLDLPVMNDAARTLSDFGV---PYEIKILPP-HQNCKEALSYALSAKERG-IKIIIV 119 (147)
Q Consensus 60 ~V~IimGS~SDl~~~~~a~~~L~~fGI---~~ev~V~SA-HRtp~~l~~~~~~~~~~g-~~ViIA 119 (147)
.|.|.+ .+.=|.|.+|.+.|+++|| +|++.=+.. +..++...++.+....+. +.|||.
T Consensus 14 ~V~vys--~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~ 76 (108)
T PHA03050 14 KVTIFV--KFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFG 76 (108)
T ss_pred CEEEEE--CCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEEC
Confidence 466654 4568999999999999999 565443333 334444444444333323 356554
No 233
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=60.38 E-value=84 Score=24.92 Aligned_cols=61 Identities=13% Similarity=0.083 Sum_probs=42.2
Q ss_pred eEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecC
Q 032094 60 IVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 122 (147)
Q Consensus 60 ~V~IimGS~SD---l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG 122 (147)
.|+++..+-++ ..+.+.+.+.++++| |++-+......+++..++++....+.++.||....
T Consensus 2 ~ig~i~~~~~~~~~~~~~~gi~~~a~~~g--y~~~~~~~~~~~~~~~~~i~~l~~~~vdgiil~~~ 65 (280)
T cd06315 2 NIIFVASDLKNGGILGVGEGVREAAKAIG--WNLRILDGRGSEAGQAAALNQAIALKPDGIVLGGV 65 (280)
T ss_pred eEEEEecccCCcHHHHHHHHHHHHHHHcC--cEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 47777766554 234445556777777 56666666678888888888887888887777643
No 234
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=60.33 E-value=11 Score=32.64 Aligned_cols=35 Identities=14% Similarity=0.201 Sum_probs=27.1
Q ss_pred EEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCchhh
Q 032094 90 IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG 129 (147)
Q Consensus 90 v~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLpG 129 (147)
..|+..|+..+.+.++.+. .+++|+++|...-+.+
T Consensus 184 atVtv~hs~T~~l~~~~~~-----ADIvi~avG~p~~v~~ 218 (285)
T PRK10792 184 CTVTVCHRFTKNLRHHVRN-----ADLLVVAVGKPGFIPG 218 (285)
T ss_pred CeEEEEECCCCCHHHHHhh-----CCEEEEcCCCcccccH
Confidence 4667778888878777653 6999999999886554
No 235
>PRK10426 alpha-glucosidase; Provisional
Probab=60.33 E-value=40 Score=31.97 Aligned_cols=87 Identities=13% Similarity=-0.022 Sum_probs=57.5
Q ss_pred eecCChHHHhhcccccccccCCCcccccCCCCCCCCCCCeE-EEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcC----
Q 032094 21 VLASSNGSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIV-GIIMESDLDLPVMNDAARTLSDFGVPYEIKILPP---- 95 (147)
Q Consensus 21 Vta~~l~~~k~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~V-~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SA---- 95 (147)
+.++++.++-++|..+...-..+ | .--- +..+|-.+....+.+.++.+++.|||+++-++--
T Consensus 182 ~~G~~~~~vi~~yt~ltGr~p~~-----------P--~Wal~G~~~g~~~~~~~v~~v~~~~r~~~IP~d~i~lddw~~~ 248 (635)
T PRK10426 182 ECADTYISLLEKLTALFGRQPEL-----------P--DWAYDGVTLGIQGGTEVVQKKLDTMRNAGVKVNGIWAQDWSGI 248 (635)
T ss_pred EeCCCHHHHHHHHHHhhCCCCCC-----------C--hhhccCccccccCCHHHHHHHHHHHHHcCCCeeEEEEeccccc
Confidence 45678889999988876433211 1 1123 5566666656778888999999999999765531
Q ss_pred -----------------CCChHHHHHHHHHHhhCCceEEEEec
Q 032094 96 -----------------HQNCKEALSYALSAKERGIKIIIVGD 121 (147)
Q Consensus 96 -----------------HRtp~~l~~~~~~~~~~g~~ViIAvA 121 (147)
.|-|+ ..+++++..++|+++++-+-
T Consensus 249 ~~~~~g~~~~~~~~~d~~~FPd-p~~mi~~L~~~G~k~v~~i~ 290 (635)
T PRK10426 249 RMTSFGKRLMWNWKWDSERYPQ-LDSRIKQLNEEGIQFLGYIN 290 (635)
T ss_pred ccccccccccccceEChhhCCC-HHHHHHHHHHCCCEEEEEEc
Confidence 12232 45677777788998876653
No 236
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=60.02 E-value=76 Score=24.28 Aligned_cols=66 Identities=11% Similarity=0.188 Sum_probs=43.1
Q ss_pred EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCchh
Q 032094 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS 128 (147)
Q Consensus 61 V~IimGS~SD---l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLp 128 (147)
|+++....+| ..+.+.+.+.++++|. .+.+......++...++++....++++.+|..+.....+.
T Consensus 2 I~vi~~~~~~~~~~~~~~g~~~~a~~~g~--~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~ 70 (268)
T cd06289 2 IGLVINDLTNPFFAELAAGLEEVLEEAGY--TVFLANSGEDVERQEQLLSTMLEHGVAGIILCPAAGTSPD 70 (268)
T ss_pred EEEEecCCCcchHHHHHHHHHHHHHHcCC--eEEEecCCCChHHHHHHHHHHHHcCCCEEEEeCCCCccHH
Confidence 5666654333 2344556667788885 4555566667888888888887788888887765444333
No 237
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=59.33 E-value=30 Score=27.89 Aligned_cols=68 Identities=18% Similarity=0.176 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHHhCCCeEEEEEcCCCCh-------HHHHHHHHHHhhCCceEEEEecCCCCchhhhhhccccCcceee
Q 032094 70 DLPVMNDAARTLSDFGVPYEIKILPPHQNC-------KEALSYALSAKERGIKIIIVGDGVEAHLSGTCSCCKFSNTCYS 142 (147)
Q Consensus 70 Dl~~~~~a~~~L~~fGI~~ev~V~SAHRtp-------~~l~~~~~~~~~~g~~ViIAvAG~aAhLpGvvAg~T~~~~~~~ 142 (147)
|.+.+++..+.|++ ..|+-|++.|=.. ++..++++...+.|+++|| |.-.|..--+-=...+.+-||
T Consensus 158 ~~~~i~~~i~~lr~---~~D~vIv~~H~G~e~~~~p~~~~~~~A~~l~~~G~DvIi---G~H~H~~~~~e~~~~~~I~Ys 231 (239)
T smart00854 158 DREKILADIARARK---KADVVIVSLHWGVEYQYEPTDEQRELAHALIDAGADVVI---GHHPHVLQPIEIYKGKLIAYS 231 (239)
T ss_pred CHHHHHHHHHHHhc---cCCEEEEEecCccccCCCCCHHHHHHHHHHHHcCCCEEE---cCCCCcCCceEEECCEEEEEc
Confidence 45666666666665 4799999999653 3446677776667899998 556664422211122335576
Q ss_pred c
Q 032094 143 C 143 (147)
Q Consensus 143 ~ 143 (147)
.
T Consensus 232 l 232 (239)
T smart00854 232 L 232 (239)
T ss_pred c
Confidence 4
No 238
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=59.05 E-value=24 Score=29.41 Aligned_cols=58 Identities=10% Similarity=-0.046 Sum_probs=42.9
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHH-hCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEe
Q 032094 60 IVGIIMESDLDLPVMNDAARTLSD-FGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120 (147)
Q Consensus 60 ~V~IimGS~SDl~~~~~a~~~L~~-fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAv 120 (147)
+|+|++|...|.-.+....+.|++ -++++++-+++-|. +...++.+..+-. .++.+.+
T Consensus 2 ~i~~~~gtr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~--~~~~~~~~~~~i~-~~~~~~~ 60 (365)
T TIGR00236 2 KVSIVLGTRPEAIKMAPLIRALKKYPEIDSYVIVTAQHR--EMLDQVLDLFHLP-PDYDLNI 60 (365)
T ss_pred eEEEEEecCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCH--HHHHHHHHhcCCC-CCeeeec
Confidence 689999999999999999999987 48899999999996 4444454432211 3454554
No 239
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=58.98 E-value=81 Score=24.29 Aligned_cols=61 Identities=21% Similarity=0.262 Sum_probs=41.4
Q ss_pred EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCC
Q 032094 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV 123 (147)
Q Consensus 61 V~IimGS~SD---l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~ 123 (147)
|+++.-+.+| ....+.+.+.++++| |.+-+...+-.+++..++++...+++++-+|.....
T Consensus 2 i~vi~~~~~~~~~~~~~~gi~~~~~~~g--y~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~ 65 (265)
T cd06290 2 IGVLTQDFASPFYGRILKGMERGLNGSG--YSPIIATGHWNQSRELEALELLKSRRVDALILLGGD 65 (265)
T ss_pred EEEEECCCCCchHHHHHHHHHHHHHHCC--CEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 5666644333 234455667778888 455566667788888888888888888888776543
No 240
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=58.88 E-value=55 Score=27.30 Aligned_cols=53 Identities=17% Similarity=0.134 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCC
Q 032094 73 VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (147)
Q Consensus 73 ~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aA 125 (147)
.+.-+..+.+++|++.-.+++.-.|+...+.+++..+...|++=+.+..|-..
T Consensus 46 t~~~a~~l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~nvL~l~GD~~ 98 (272)
T TIGR00676 46 TVRIVRRIKKETGIPTVPHLTCIGATREEIREILREYRELGIRHILALRGDPP 98 (272)
T ss_pred HHHHHHHHHHhcCCCeeEEeeecCCCHHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 44444444458999999999999999999999998888999998888888654
No 241
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=58.70 E-value=80 Score=24.14 Aligned_cols=61 Identities=11% Similarity=0.044 Sum_probs=40.6
Q ss_pred EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCC
Q 032094 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV 123 (147)
Q Consensus 61 V~IimGS~SD---l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~ 123 (147)
|++|.-+.++ ....+.+.+.++++|. ++.+......+++..++++....++++.+|.....
T Consensus 2 Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~ 65 (268)
T cd01575 2 VAVLVPSLSNSVFADVLQGISDVLEAAGY--QLLLGNTGYSPEREEELLRTLLSRRPAGLILTGLE 65 (268)
T ss_pred EEEEeCCCcchhHHHHHHHHHHHHHHcCC--EEEEecCCCCchhHHHHHHHHHHcCCCEEEEeCCC
Confidence 4555543332 3344566677888884 55666667788888888877777778888776543
No 242
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=58.50 E-value=41 Score=29.23 Aligned_cols=52 Identities=13% Similarity=0.044 Sum_probs=42.4
Q ss_pred CeEEEEecCCCC-HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHh
Q 032094 59 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAK 110 (147)
Q Consensus 59 ~~V~IimGS~SD-l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~ 110 (147)
.++.|+.|.+.+ .-+.+...+.++++||.+++.-.+..-+.+++.+.++...
T Consensus 35 ~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN 87 (297)
T PRK14168 35 GLVTILVGESPASLSYVTLKIKTAHRLGFHEIQDNQSVDITEEELLALIDKYN 87 (297)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 578888887654 4455666889999999999999999999999999987664
No 243
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=58.49 E-value=22 Score=25.75 Aligned_cols=41 Identities=15% Similarity=0.080 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEc-CCCChHHHHHHHHHH
Q 032094 69 LDLPVMNDAARTLSDFGVPYEIKILP-PHQNCKEALSYALSA 109 (147)
Q Consensus 69 SDl~~~~~a~~~L~~fGI~~ev~V~S-AHRtp~~l~~~~~~~ 109 (147)
..=+.|++|.+.|++.||+|++.=+. -.-+.+++.++++..
T Consensus 8 ~~C~~c~ka~~~L~~~gi~~~~idi~~~~~~~~el~~~~~~~ 49 (115)
T cd03032 8 PSCSSCRKAKQWLEEHQIPFEERNLFKQPLTKEELKEILSLT 49 (115)
T ss_pred CCCHHHHHHHHHHHHCCCceEEEecCCCcchHHHHHHHHHHh
Confidence 44578999999999999999866553 334466666666543
No 244
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=57.91 E-value=52 Score=22.89 Aligned_cols=59 Identities=22% Similarity=0.307 Sum_probs=43.4
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecC
Q 032094 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 122 (147)
Q Consensus 59 ~~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG 122 (147)
..+.++....-|-+.+ +.+++.||+. -+|-.|-+.....+.++++..+ +|..+.|+.-|
T Consensus 10 ~~~~~lvS~s~DGe~i---a~~~~~~G~~-~iRGSs~rgg~~Alr~~~~~lk-~G~~~~itpDG 68 (74)
T PF04028_consen 10 RKIAALVSRSRDGELI---ARVLERFGFR-TIRGSSSRGGARALREMLRALK-EGYSIAITPDG 68 (74)
T ss_pred CCEEEEEccCcCHHHH---HHHHHHcCCC-eEEeCCCCcHHHHHHHHHHHHH-CCCeEEEeCCC
Confidence 3466666666776665 5577899987 5777777777788888888776 67889888776
No 245
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=57.84 E-value=19 Score=31.17 Aligned_cols=51 Identities=10% Similarity=0.128 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhCCCeE-----------------------------EEEEcCCCChHHHHHHHHHHhhCCceEEEEecCC
Q 032094 73 VMNDAARTLSDFGVPYE-----------------------------IKILPPHQNCKEALSYALSAKERGIKIIIVGDGV 123 (147)
Q Consensus 73 ~~~~a~~~L~~fGI~~e-----------------------------v~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~ 123 (147)
+...+.++|+.+||+.+ .+|...|.....+.++.+. .+++|++.|.
T Consensus 140 Tp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t~~l~~~~~~-----ADIVI~AvG~ 214 (286)
T PRK14184 140 TPAGVMTLLERYGLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRTPDLAEECRE-----ADFLFVAIGR 214 (286)
T ss_pred CHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCchhHHHHHHh-----CCEEEEecCC
Confidence 45667778888888742 5788889988888888764 6999999988
Q ss_pred CCchh
Q 032094 124 EAHLS 128 (147)
Q Consensus 124 aAhLp 128 (147)
..-+.
T Consensus 215 p~li~ 219 (286)
T PRK14184 215 PRFVT 219 (286)
T ss_pred CCcCC
Confidence 66544
No 246
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=57.73 E-value=47 Score=28.64 Aligned_cols=52 Identities=13% Similarity=0.095 Sum_probs=42.8
Q ss_pred CeEEEEecCCCC-HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHh
Q 032094 59 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAK 110 (147)
Q Consensus 59 ~~V~IimGS~SD-l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~ 110 (147)
.++.|+.|.+.+ .-+.+...+.++++||.+++.-.+..-+.+++.+.++...
T Consensus 28 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN 80 (279)
T PRK14178 28 RLATVIVGDDPASQMYVRMKHRACERVGIGSVGIELPGDATTRTVLERIRRLN 80 (279)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 478888887654 4566667889999999999999999999999999987653
No 247
>COG0337 AroB 3-dehydroquinate synthetase [Amino acid transport and metabolism]
Probab=57.67 E-value=66 Score=28.90 Aligned_cols=74 Identities=19% Similarity=0.218 Sum_probs=57.5
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEc---CCCChHHHHHHHHHHhhCCc---eEEEEecCC-CCchhhhhh
Q 032094 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP---PHQNCKEALSYALSAKERGI---KIIIVGDGV-EAHLSGTCS 132 (147)
Q Consensus 60 ~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~S---AHRtp~~l~~~~~~~~~~g~---~ViIAvAG~-aAhLpGvvA 132 (147)
+|+|++=..=.--+.++....|+..|+..+..++. ..++.+.+.++.+..-..++ ..+||.-|+ -+-|+|.+|
T Consensus 35 k~~ivtd~~v~~~y~~~~~~~l~~~g~~v~~~~lp~GE~~Ksl~~~~~i~~~ll~~~~~R~s~iialGGGvigDlaGF~A 114 (360)
T COG0337 35 KVAIVTDETVAPLYLEKLLATLEAAGVEVDSIVLPDGEEYKSLETLEKIYDALLEAGLDRKSTLIALGGGVIGDLAGFAA 114 (360)
T ss_pred eEEEEECchhHHHHHHHHHHHHHhcCCeeeEEEeCCCcccccHHHHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHHH
Confidence 68888777666668999999999999998777776 67888777777766554444 788888777 566899888
Q ss_pred c
Q 032094 133 C 133 (147)
Q Consensus 133 g 133 (147)
|
T Consensus 115 a 115 (360)
T COG0337 115 A 115 (360)
T ss_pred H
Confidence 6
No 248
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=57.58 E-value=49 Score=21.33 Aligned_cols=39 Identities=23% Similarity=0.291 Sum_probs=30.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHH
Q 032094 68 DLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYA 106 (147)
Q Consensus 68 ~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~ 106 (147)
..+=|.|.++.+.|++++++|+..-+..+....++.+.+
T Consensus 7 ~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~ 45 (82)
T cd03419 7 KSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYL 45 (82)
T ss_pred cCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHH
Confidence 467799999999999999998866666666655555544
No 249
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=57.42 E-value=49 Score=28.30 Aligned_cols=54 Identities=13% Similarity=-0.014 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCC
Q 032094 72 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (147)
Q Consensus 72 ~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aA 125 (147)
-..+-+..++++.|++.-.+++.-.|+..++.+.+..+...|++=|.|..|--.
T Consensus 69 r~~~~a~~i~~~~g~~~i~Hltcr~~n~~~l~~~L~~~~~~GI~niLaLrGD~p 122 (296)
T PRK09432 69 RTHSIIKGIKKRTGLEAAPHLTCIDATPDELRTIAKDYWNNGIRHIVALRGDLP 122 (296)
T ss_pred HHHHHHHHHHHHhCCCeeeecccCCCCHHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 344345556688999999999999999999999998889999999999999743
No 250
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=57.23 E-value=51 Score=26.16 Aligned_cols=65 Identities=20% Similarity=0.146 Sum_probs=48.2
Q ss_pred eEEEEecCCCC--------------HHHHHHHHHHHHHhCCCeEEEEEcC-CCChHHHHHHHHHHhhCCceEEEEecCCC
Q 032094 60 IVGIIMESDLD--------------LPVMNDAARTLSDFGVPYEIKILPP-HQNCKEALSYALSAKERGIKIIIVGDGVE 124 (147)
Q Consensus 60 ~V~IimGS~SD--------------l~~~~~a~~~L~~fGI~~ev~V~SA-HRtp~~l~~~~~~~~~~g~~ViIAvAG~a 124 (147)
.+.-+.-+.|| ++.+.++.+.++++|....+....+ .-+|+++.++++...+-|++.| .++-..
T Consensus 82 ~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i-~l~Dt~ 160 (237)
T PF00682_consen 82 DIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADII-YLADTV 160 (237)
T ss_dssp SEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEE-EEEETT
T ss_pred CEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEE-EeeCcc
Confidence 35556667899 8899999999999999988877554 4468889999988877788775 444333
Q ss_pred C
Q 032094 125 A 125 (147)
Q Consensus 125 A 125 (147)
+
T Consensus 161 G 161 (237)
T PF00682_consen 161 G 161 (237)
T ss_dssp S
T ss_pred C
Confidence 3
No 251
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=57.09 E-value=40 Score=29.10 Aligned_cols=53 Identities=15% Similarity=0.129 Sum_probs=43.2
Q ss_pred CeEEEEecCCCC-HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhh
Q 032094 59 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE 111 (147)
Q Consensus 59 ~~V~IimGS~SD-l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~ 111 (147)
.++.|+.|.+.+ .-+.+.-.+.++++||.+++.-.+..-+.+++.+.++...+
T Consensus 34 ~Laii~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~ 87 (286)
T PRK14175 34 KLSVILVGNDGASQSYVRSKKKAAEKIGMISEIVHLEETATEEEVLNELNRLNN 87 (286)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 477888887654 45566778889999999999999999999999999976643
No 252
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=56.93 E-value=31 Score=22.30 Aligned_cols=30 Identities=23% Similarity=0.297 Sum_probs=24.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCeEEEEEcCC
Q 032094 67 SDLDLPVMNDAARTLSDFGVPYEIKILPPH 96 (147)
Q Consensus 67 S~SDl~~~~~a~~~L~~fGI~~ev~V~SAH 96 (147)
|.+.=|.|.+|.+.|++.||+|+..-+...
T Consensus 7 s~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~ 36 (72)
T cd03029 7 TKPGCPFCARAKAALQENGISYEEIPLGKD 36 (72)
T ss_pred ECCCCHHHHHHHHHHHHcCCCcEEEECCCC
Confidence 456779999999999999999976655433
No 253
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=56.78 E-value=13 Score=33.18 Aligned_cols=33 Identities=21% Similarity=0.415 Sum_probs=26.7
Q ss_pred CCCeEEEEe---cCCCCHHHHHHHHHHHHHhCCCeE
Q 032094 57 DAPIVGIIM---ESDLDLPVMNDAARTLSDFGVPYE 89 (147)
Q Consensus 57 ~~~~V~Iim---GS~SDl~~~~~a~~~L~~fGI~~e 89 (147)
++|.+++++ |+.-.++-+++.+++|+++|||.-
T Consensus 155 ~~~~lallTh~Dg~YGNl~Dakkva~ic~e~gvPll 190 (382)
T COG1103 155 DPPALALLTHVDGEYGNLADAKKVAKICREYGVPLL 190 (382)
T ss_pred CCceEEEEeccCCCcCCchhhHHHHHHHHHcCCceE
Confidence 335666665 778889999999999999999843
No 254
>PRK11175 universal stress protein UspE; Provisional
Probab=56.76 E-value=54 Score=26.56 Aligned_cols=59 Identities=15% Similarity=0.185 Sum_probs=36.5
Q ss_pred HHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCchhhhhhcccc
Q 032094 75 NDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGTCSCCKF 136 (147)
Q Consensus 75 ~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLpGvvAg~T~ 136 (147)
+++...++..|++.+..+.--++..+.+.++ +.+.+++.||.++-+...+.+.+-|.|.
T Consensus 72 ~~~~~~~~~~~~~~~~~v~~~g~~~~~i~~~---a~~~~~DLiV~G~~~~~~~~~~~~gs~~ 130 (305)
T PRK11175 72 REQAKPYLDAGIPIEIKVVWHNRPFEAIIQE---VIAGGHDLVVKMTHQHDKLESVIFTPTD 130 (305)
T ss_pred HHHHHHHhhcCCceEEEEecCCCcHHHHHHH---HHhcCCCEEEEeCCCCcHHHhhccChhH
Confidence 3444444556888877666333333444444 4467899999998776777776655443
No 255
>smart00642 Aamy Alpha-amylase domain.
Probab=56.68 E-value=52 Score=25.55 Aligned_cols=49 Identities=27% Similarity=0.304 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEcC------------------------CCChHHHHHHHHHHhhCCceEEE
Q 032094 69 LDLPVMNDAARTLSDFGVPYEIKILPP------------------------HQNCKEALSYALSAKERGIKIII 118 (147)
Q Consensus 69 SDl~~~~~a~~~L~~fGI~~ev~V~SA------------------------HRtp~~l~~~~~~~~~~g~~ViI 118 (147)
-|+.-+.+-...|+++|+..- -+... -=+.+++.++++.+.++|++|++
T Consensus 16 G~~~gi~~~l~yl~~lG~~~I-~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vil 88 (166)
T smart00642 16 GDLQGIIEKLDYLKDLGVTAI-WLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVIL 88 (166)
T ss_pred cCHHHHHHHHHHHHHCCCCEE-EECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEE
Confidence 466666666678999998622 11111 12458899999999999999986
No 256
>PF11965 DUF3479: Domain of unknown function (DUF3479); InterPro: IPR022571 This functionally uncharacterised domain, found N-terminal to PF02514 from PFAM, occurs in magnesium chelatase subunit H, which is involved in chlorophyll biosynthesis. It is found in bacteria, green plants and archaea. It is around 160 amino acids in length.; GO: 0016851 magnesium chelatase activity
Probab=56.33 E-value=45 Score=26.70 Aligned_cols=59 Identities=14% Similarity=0.108 Sum_probs=38.5
Q ss_pred eEEEEec-CCCCHHHHHHHHHHHHHhCCCeEEEEEcCC---CChHHHHHHHHHHhhCCceEEEEe
Q 032094 60 IVGIIME-SDLDLPVMNDAARTLSDFGVPYEIKILPPH---QNCKEALSYALSAKERGIKIIIVG 120 (147)
Q Consensus 60 ~V~IimG-S~SDl~~~~~a~~~L~~fGI~~ev~V~SAH---Rtp~~l~~~~~~~~~~g~~ViIAv 120 (147)
+|++|+| +.-..+..+.+....++.....++.|-++. +.|+.++++.+..+. .++||+-
T Consensus 2 r~V~vtld~~~~~al~~aa~~l~~~~~p~l~l~~~~~~el~~~~~~~~~~~~aia~--ADii~~s 64 (164)
T PF11965_consen 2 RFVIVTLDEHYNSALYRAAARLNRDHCPGLELSVFAAAELERDPEALEECEAAIAR--ADIIFGS 64 (164)
T ss_pred EEEEEeCchhhhHHHHHHHHHHhhccCCCeEEEEEeHHHhhcChHHHHHHHHHHHh--CCEEEee
Confidence 3455555 444455555555555566777888887754 999888888765544 6888763
No 257
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=56.29 E-value=55 Score=28.76 Aligned_cols=65 Identities=11% Similarity=0.106 Sum_probs=52.6
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHh---CCCeEEEEEcCCCChH-----------HHHHHHHHHhhCCceEEEEecCCC
Q 032094 60 IVGIIMESDLDLPVMNDAARTLSDF---GVPYEIKILPPHQNCK-----------EALSYALSAKERGIKIIIVGDGVE 124 (147)
Q Consensus 60 ~V~IimGS~SDl~~~~~a~~~L~~f---GI~~ev~V~SAHRtp~-----------~l~~~~~~~~~~g~~ViIAvAG~a 124 (147)
...+|-|=..|.+.+++.++.++.+ |..+.+.++-.|..++ ++.+|.+..++.|+.|.|--..+.
T Consensus 252 ry~LI~GvNDs~e~a~~L~~~lk~l~~~~~~~~VnLIPyn~~~~~~~~~~~ps~e~v~~f~~~L~~~Gi~vtiR~~~G~ 330 (347)
T PRK14453 252 AYIMLEGVNDSKEHAEAVVGLLRNRGSWEHLYHVNLIPYNSTDKTPFKFQSSSAGQIKQFCSTLKSAGISVTVRTQFGS 330 (347)
T ss_pred EEEeECCCCCCHHHHHHHHHHHhhccccCCcceEEEecCCCCCCCCccCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 3577888888899999999999988 5578899999998654 478888888889999988655443
No 258
>PRK11253 ldcA L,D-carboxypeptidase A; Provisional
Probab=56.23 E-value=62 Score=27.73 Aligned_cols=63 Identities=16% Similarity=0.083 Sum_probs=43.5
Q ss_pred eEEEEecCC-C-CHHHHHHHHHHHHHhCCCeEEEEEcCCC----------ChHHHHHHHHHH--hhCCceEEEEecCCCC
Q 032094 60 IVGIIMESD-L-DLPVMNDAARTLSDFGVPYEIKILPPHQ----------NCKEALSYALSA--KERGIKIIIVGDGVEA 125 (147)
Q Consensus 60 ~V~IimGS~-S-Dl~~~~~a~~~L~~fGI~~ev~V~SAHR----------tp~~l~~~~~~~--~~~g~~ViIAvAG~aA 125 (147)
+|+||.=|. - +.+..+.+.+.|+++|....+ +.|. .-+|..++.+.. .+. ++.|+++-|+-+
T Consensus 3 ~I~viAPSs~~~~~~~~~~~i~~L~~~G~~v~~---~~~~~~~~~~~agtd~~Ra~dL~~a~a~~dp-i~aI~~~rGGyg 78 (305)
T PRK11253 3 LFHLIAPSGYPIDQAAALRGVQRLTDAGHQVEN---VEVIARRYQRFAGTDGERLADLNSLADLTTP-NTIVLAVRGGYG 78 (305)
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHhCCCEEee---ccccccccCccCCCHHHHHHHHHHHHhcCCC-ccEEEEecccCC
Confidence 588888774 2 678899999999999986432 2221 234555565544 455 999999999865
Q ss_pred c
Q 032094 126 H 126 (147)
Q Consensus 126 h 126 (147)
.
T Consensus 79 ~ 79 (305)
T PRK11253 79 A 79 (305)
T ss_pred H
Confidence 4
No 259
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=55.84 E-value=44 Score=28.88 Aligned_cols=52 Identities=13% Similarity=0.114 Sum_probs=42.9
Q ss_pred CeEEEEecCCC-CHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHh
Q 032094 59 PIVGIIMESDL-DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAK 110 (147)
Q Consensus 59 ~~V~IimGS~S-Dl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~ 110 (147)
.++.|+.|.+. +.-+.+...+.++++||.+++....+.-+.+++.+.++...
T Consensus 35 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN 87 (285)
T PRK10792 35 GLAVVLVGSDPASQVYVASKRKACEEVGFVSRSYDLPETTSEAELLALIDELN 87 (285)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 47777788664 45567777889999999999999999999999999997664
No 260
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=55.76 E-value=78 Score=25.76 Aligned_cols=60 Identities=13% Similarity=0.260 Sum_probs=37.2
Q ss_pred EEEEecCCCCHHHHHH----HHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCC
Q 032094 61 VGIIMESDLDLPVMND----AARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV 123 (147)
Q Consensus 61 V~IimGS~SDl~~~~~----a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~ 123 (147)
|+++|.+ .+-+...+ +.+.++++| |++.+.+..-.++...++++....++++.||.....
T Consensus 1 ig~~~~~-~~~~~~~~~~~~i~~~a~~~g--~~v~~~~~~~~~~~q~~~i~~l~~~~vDgIIi~~~~ 64 (302)
T TIGR02634 1 IGVSIDD-LRLERWQKDRDIFVAAAESLG--AKVFVQSANGNEAKQISQIENLIARGVDVLVIIPQN 64 (302)
T ss_pred CeeecCc-cchhhHHHHHHHHHHHHHhcC--CEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 3455543 34444443 344455566 466667777778877788877777778877776543
No 261
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=55.71 E-value=82 Score=27.72 Aligned_cols=63 Identities=8% Similarity=0.077 Sum_probs=49.6
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCC---------hHHHHHHHHHHhhCCceEEEEecC
Q 032094 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQN---------CKEALSYALSAKERGIKIIIVGDG 122 (147)
Q Consensus 60 ~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRt---------p~~l~~~~~~~~~~g~~ViIAvAG 122 (147)
...+|=|=..+.+.+++.++.|+.++..+.+.++-.|.. .+++.++.+..++.|+.|.|=-..
T Consensus 256 eyvLIpGvNDs~e~a~~La~~l~~l~~~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~~~gi~v~vR~~~ 327 (348)
T PRK14467 256 EYVLIKGVNDSPEDALRLAQLIGKNKKKFKVNLIPFNPDPELPYERPELERVYKFQKILWDNGISTFVRWSK 327 (348)
T ss_pred EEEEECCccCCHHHHHHHHHHHhcCCCceEEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeCCC
Confidence 356777888888999999999998865678888888863 467777877788889999886433
No 262
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=55.63 E-value=41 Score=22.13 Aligned_cols=23 Identities=13% Similarity=0.203 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEc
Q 032094 72 PVMNDAARTLSDFGVPYEIKILP 94 (147)
Q Consensus 72 ~~~~~a~~~L~~fGI~~ev~V~S 94 (147)
+.+.++...|++.||+|++.-+.
T Consensus 11 p~~~kv~~~L~~~gi~y~~~~v~ 33 (77)
T cd03041 11 PFCRLVREVLTELELDVILYPCP 33 (77)
T ss_pred chHHHHHHHHHHcCCcEEEEECC
Confidence 78999999999999999986554
No 263
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=55.63 E-value=94 Score=24.05 Aligned_cols=58 Identities=19% Similarity=0.203 Sum_probs=27.4
Q ss_pred EEEEecCCCCHHHHH----HHHHHHHH-hCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEec
Q 032094 61 VGIIMESDLDLPVMN----DAARTLSD-FGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (147)
Q Consensus 61 V~IimGS~SDl~~~~----~a~~~L~~-fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvA 121 (147)
|+++.-+.+| +... .+.+.+++ .| |++.+...-..++...++++...+.+++.||...
T Consensus 2 igvi~~~~~~-~~~~~~~~gi~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~ 64 (272)
T cd06301 2 IGVSMANFDD-NFLTLLRNAMKEHAKVLGG--VELQFEDAKNDVATQLSQVENFIAQGVDAIIVVP 64 (272)
T ss_pred eeEeecccCC-HHHHHHHHHHHHHHHHcCC--cEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 4555544443 2222 33334444 33 3444444444556565655555455566555443
No 264
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=55.61 E-value=66 Score=29.69 Aligned_cols=73 Identities=15% Similarity=0.099 Sum_probs=47.6
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcC---CCChHHHHHHHHHHhhC---CceEEEEecCCC-Cchhhhhh
Q 032094 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPP---HQNCKEALSYALSAKER---GIKIIIVGDGVE-AHLSGTCS 132 (147)
Q Consensus 60 ~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SA---HRtp~~l~~~~~~~~~~---g~~ViIAvAG~a-AhLpGvvA 132 (147)
++.||+..... ...++..+.|+..|+.+...|... +++.+...+..+...+. ..+++||+-|++ .=++|.+|
T Consensus 211 k~~iV~d~~v~-~~~~~l~~~L~~~g~~v~~~v~p~~E~~ksl~~v~~~~~~l~~~~~~r~D~IIAIGGGsv~D~AKfvA 289 (542)
T PRK14021 211 KVALIHTQPVQ-RHSDRARTLLRQGGYEVSDIVIPDAEAGKTIEVANGIWQRLGNEGFTRSDAIVGLGGGAATDLAGFVA 289 (542)
T ss_pred eEEEEECccHH-HHHHHHHHHHHhCCCceEEEEeCCCcccCCHHHHHHHHHHHHhcCCCCCcEEEEEcChHHHHHHHHHH
Confidence 56666655443 467788888999898755555543 34556666555444433 479999998874 45777776
Q ss_pred c
Q 032094 133 C 133 (147)
Q Consensus 133 g 133 (147)
+
T Consensus 290 ~ 290 (542)
T PRK14021 290 A 290 (542)
T ss_pred H
Confidence 5
No 265
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=55.48 E-value=94 Score=23.96 Aligned_cols=59 Identities=12% Similarity=0.171 Sum_probs=34.2
Q ss_pred EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEec
Q 032094 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (147)
Q Consensus 61 V~IimGS~SD---l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvA 121 (147)
|++++=+.+| ....+.+.+.+++.|+ ++.+......+++..++++....++++.+|...
T Consensus 2 i~~~~~~~~~~~~~~~~~~i~~~~~~~g~--~~~i~~~~~~~~~~~~~~~~~~~~~vdgiii~~ 63 (267)
T cd06322 2 IGASLLTQQHPFYIELANAMKEEAKKQKV--NLIVSIANQDLNKQLSDVEDFITKKVDAIVLSP 63 (267)
T ss_pred eeEeecCcccHHHHHHHHHHHHHHHhcCC--EEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 4555544444 2334555566666765 444444455677677777666666777776654
No 266
>PRK00061 ribH 6,7-dimethyl-8-ribityllumazine synthase; Provisional
Probab=55.46 E-value=39 Score=26.62 Aligned_cols=61 Identities=16% Similarity=0.162 Sum_probs=47.0
Q ss_pred CCCeEEEEecCCCCH---HHHHHHHHHHHHhCCC----eEEEEEcCCCChHHHHHHHHHHhhCCceEEEEe
Q 032094 57 DAPIVGIIMESDLDL---PVMNDAARTLSDFGVP----YEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120 (147)
Q Consensus 57 ~~~~V~IimGS~SDl---~~~~~a~~~L~~fGI~----~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAv 120 (147)
+..+|+||.+.-.+. ...+.|.+.|++.|++ ..+.|-++-=.|-....+++ .+.++.+||.
T Consensus 11 ~~~riaIV~s~~n~~i~~~l~~ga~~~l~~~gv~~~~i~v~~VPGa~EiP~a~~~l~~---~~~~DavIal 78 (154)
T PRK00061 11 KGLRIGIVVARFNDFITDALLEGALDALKRHGVSEENIDVVRVPGAFEIPLAAKKLAE---SGKYDAVIAL 78 (154)
T ss_pred CCCEEEEEEecCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCCHHHHHHHHHHHHH---cCCCCEEEEE
Confidence 446999999999888 7888999999999975 22566777777777777764 3457888874
No 267
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=55.36 E-value=52 Score=28.46 Aligned_cols=52 Identities=12% Similarity=0.119 Sum_probs=41.8
Q ss_pred CeEEEEecCCCC-HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHh
Q 032094 59 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAK 110 (147)
Q Consensus 59 ~~V~IimGS~SD-l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~ 110 (147)
.++.|..|.+.+ .-+++...+.++++||.+++.-.+..-+.+++.+.++...
T Consensus 32 ~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN 84 (282)
T PRK14182 32 GLTVVRVGDDPASAIYVRGKRKDCEEVGITSVEHHLPATTTQAELLALIARLN 84 (282)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 477778886654 4556666889999999999999999999999999886653
No 268
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=55.33 E-value=53 Score=28.44 Aligned_cols=52 Identities=17% Similarity=0.169 Sum_probs=42.7
Q ss_pred CeEEEEecCCCC-HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHh
Q 032094 59 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAK 110 (147)
Q Consensus 59 ~~V~IimGS~SD-l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~ 110 (147)
.++.|+.|.+.+ .-+++...+.++++||.+++...+.+=+.+++.+.++...
T Consensus 33 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN 85 (286)
T PRK14184 33 GLAVILVGEDPASQVYVRNKERACEDAGIVSEAFRLPADTTQEELEDLIAELN 85 (286)
T ss_pred EEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 477888887655 4556666889999999999999999999999999987653
No 269
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=55.24 E-value=25 Score=30.37 Aligned_cols=47 Identities=21% Similarity=0.192 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCchh
Q 032094 73 VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS 128 (147)
Q Consensus 73 ~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLp 128 (147)
+.+..+..|.+-| ..|...|...+.+.++.+. .+++|++.|...-+.
T Consensus 169 VG~Pla~lL~~~g----AtVtv~hs~t~~l~~~~~~-----ADIvV~AvG~p~~i~ 215 (285)
T PRK14191 169 VGKPLAMLMLNAG----ASVSVCHILTKDLSFYTQN-----ADIVCVGVGKPDLIK 215 (285)
T ss_pred hHHHHHHHHHHCC----CEEEEEeCCcHHHHHHHHh-----CCEEEEecCCCCcCC
Confidence 3444444444433 3345558766777777653 699999999988766
No 270
>PLN02540 methylenetetrahydrofolate reductase
Probab=55.19 E-value=50 Score=31.30 Aligned_cols=65 Identities=18% Similarity=0.133 Sum_probs=49.0
Q ss_pred eEEEEec---CCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCC
Q 032094 60 IVGIIME---SDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (147)
Q Consensus 60 ~V~IimG---S~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aA 125 (147)
.|.|--| |++|. .++-|..+.+++|++.-.+++.-.|+.+.+.+.+..+...|++=|.|..|-.-
T Consensus 31 FisVT~gAgGst~~~-Tl~la~~lq~~~Gie~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILALrGDpp 98 (565)
T PLN02540 31 FCDITWGAGGSTADL-TLDIANRMQNMICVETMMHLTCTNMPVEKIDHALETIKSNGIQNILALRGDPP 98 (565)
T ss_pred EEEeCCCCCCCcHHH-HHHHHHHHHHhcCCCeeEEeeecCCCHHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence 4555433 33432 34444444456799999999999999999999999999999999999998654
No 271
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=55.15 E-value=88 Score=26.65 Aligned_cols=54 Identities=11% Similarity=0.087 Sum_probs=42.3
Q ss_pred CeEEEEecCCCCHH-HHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhC
Q 032094 59 PIVGIIMESDLDLP-VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER 112 (147)
Q Consensus 59 ~~V~IimGS~SDl~-~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~ 112 (147)
.++.|..|.+.+-. +.+--.+.++++||++++.-.+++-+++++.++++...+.
T Consensus 35 ~L~~i~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~~l~~~i~~Ln~d 89 (283)
T PRK14192 35 ILATILVGDDPASATYVRMKGNACRRVGMDSLKVELPQETTTEQLLAKIEELNAN 89 (283)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47778888765544 4455566779999999999999999999999999776554
No 272
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=55.02 E-value=1.3e+02 Score=25.23 Aligned_cols=87 Identities=16% Similarity=0.109 Sum_probs=51.4
Q ss_pred hcccccccccCCCcccccCCCCCCCCCCCeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEcC--CCChHHHHHH
Q 032094 31 SRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPP--HQNCKEALSY 105 (147)
Q Consensus 31 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~SD---l~~~~~a~~~L~~fGI~~ev~V~SA--HRtp~~l~~~ 105 (147)
..+.|-+.|...+. +. |+........|+++.-+..+ ....+.+.+.++++|.. +.+... .-..++..+.
T Consensus 23 ~~~~~~~~~~~~Lg-Y~---Pn~~Ar~t~~Igvv~p~~~~~f~~~~~~gi~~aa~~~G~~--l~i~~~~~~~~~~~q~~~ 96 (343)
T PRK10936 23 NLLTWHLAQRTSLQ-YS---PLLKAKKAWKLCALYPHLKDSYWLSVNYGMVEEAKRLGVD--LKVLEAGGYYNLAKQQQQ 96 (343)
T ss_pred hHHHHHHHhhcccc-cc---cccccCCCeEEEEEecCCCchHHHHHHHHHHHHHHHhCCE--EEEEcCCCCCCHHHHHHH
Confidence 34567666655543 21 23344455689988865443 22334566667788864 444433 2345666777
Q ss_pred HHHHhhCCceEEEEecCC
Q 032094 106 ALSAKERGIKIIIVGDGV 123 (147)
Q Consensus 106 ~~~~~~~g~~ViIAvAG~ 123 (147)
++...+++++.||.+...
T Consensus 97 i~~l~~~~vdgIIl~~~~ 114 (343)
T PRK10936 97 LEQCVAWGADAILLGAVT 114 (343)
T ss_pred HHHHHHhCCCEEEEeCCC
Confidence 777777888877776543
No 273
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=54.97 E-value=96 Score=23.89 Aligned_cols=60 Identities=13% Similarity=0.225 Sum_probs=40.4
Q ss_pred EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecC
Q 032094 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 122 (147)
Q Consensus 61 V~IimGS~SD---l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG 122 (147)
|++++-+.++ ..+.+.+.+.++++|.. +.+...-..++...++++.+..++++.+|....
T Consensus 2 I~vi~~~~~~~~~~~~~~gi~~~~~~~g~~--~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~ 64 (265)
T cd06291 2 IGLIVPTISNPFFSELARAVEKELYKKGYK--LILCNSDNDPEKEREYLEMLRQNQVDGIIAGTH 64 (265)
T ss_pred EEEEECCCCChhHHHHHHHHHHHHHHCCCe--EEEecCCccHHHHHHHHHHHHHcCCCEEEEecC
Confidence 6777765443 34455666788888855 444444456777778888787888888887654
No 274
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=54.95 E-value=1.3e+02 Score=25.24 Aligned_cols=65 Identities=9% Similarity=0.104 Sum_probs=46.1
Q ss_pred CCCeEEEEecCCCCH---HHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCC
Q 032094 57 DAPIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV 123 (147)
Q Consensus 57 ~~~~V~IimGS~SDl---~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~ 123 (147)
+..+|++++....+- .+.+-+.+.++++| |++.+.+....++...++++...+++++.||..+..
T Consensus 24 ~~~~Ig~i~~~~~~~f~~~~~~gi~~~a~~~g--~~l~i~~~~~~~~~~~~~i~~l~~~~vDGiIi~~~~ 91 (330)
T PRK10355 24 KEVKIGMAIDDLRLERWQKDRDIFVKKAESLG--AKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYN 91 (330)
T ss_pred CCceEEEEecCCCchHHHHHHHHHHHHHHHcC--CEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 456899999654433 22334455666777 567777888889989899988888889888876543
No 275
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=54.90 E-value=51 Score=25.15 Aligned_cols=50 Identities=16% Similarity=0.211 Sum_probs=32.4
Q ss_pred EecCCCCHH-HHHHHHHHHHHhCCCeEEEEEcCCCCh--HHHHHHHHHHhhCC
Q 032094 64 IMESDLDLP-VMNDAARTLSDFGVPYEIKILPPHQNC--KEALSYALSAKERG 113 (147)
Q Consensus 64 imGS~SDl~-~~~~a~~~L~~fGI~~ev~V~SAHRtp--~~l~~~~~~~~~~g 113 (147)
++|...+.+ ...++.+.|.+.|++..+++.--.-.. +++.++++..++.+
T Consensus 131 ~~g~~~~~~~~~~~~i~~l~~~gi~~~i~~~v~~~~~~~~ei~~~~~~l~~~~ 183 (191)
T TIGR02495 131 LYGLEKNGSNNILKSLEILLRSGIPFELRTTVHRGFLDEEDLAEIATRIKENG 183 (191)
T ss_pred HHCCCCchHHHHHHHHHHHHHcCCCEEEEEEEeCCCCCHHHHHHHHHHhccCC
Confidence 445544554 666777888888998887766432222 46777777766665
No 276
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=54.88 E-value=84 Score=29.30 Aligned_cols=71 Identities=17% Similarity=0.097 Sum_probs=56.9
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEE----EcCCCChHHHHHHHHHHhhCCceEEEEecCCCCchhhhhh
Q 032094 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKI----LPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGTCS 132 (147)
Q Consensus 60 ~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V----~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLpGvvA 132 (147)
.|.-|.-+-||+..++.+.+..++.|...+..| ...| +++.+.++++.+.+-|++ .|+++-+++.|-+--+
T Consensus 112 di~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~-t~e~~~~~a~~l~~~Gad-~I~IkDtaGll~P~~~ 186 (499)
T PRK12330 112 DVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTICYTVSPIH-TVEGFVEQAKRLLDMGAD-SICIKDMAALLKPQPA 186 (499)
T ss_pred CEEEEEecCChHHHHHHHHHHHHHhCCeEEEEEEEecCCCC-CHHHHHHHHHHHHHcCCC-EEEeCCCccCCCHHHH
Confidence 466677788999999999999999999775444 3344 899999999999888987 6788888888765443
No 277
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=54.87 E-value=26 Score=30.56 Aligned_cols=53 Identities=11% Similarity=0.115 Sum_probs=42.7
Q ss_pred CeEEEEecCCCC-HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhh
Q 032094 59 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE 111 (147)
Q Consensus 59 ~~V~IimGS~SD-l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~ 111 (147)
.++.|+.|.+.+ .-+++.-.+.++++||.+++.-.+..-+.+++.+.++...+
T Consensus 35 ~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~ 88 (301)
T PRK14194 35 ALAVILVGNDPASQVYVRNKILRAEEAGIRSLEHRLPADTSQARLLALIAELNA 88 (301)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcC
Confidence 477777886654 44666777899999999999999999999999999976643
No 278
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=54.82 E-value=52 Score=20.80 Aligned_cols=58 Identities=14% Similarity=0.040 Sum_probs=39.5
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhCCCe------------EEEEEcCCCChHHHHHHHHHHh-hCCceEEE
Q 032094 60 IVGIIMESDLDLPVMNDAARTLSDFGVPY------------EIKILPPHQNCKEALSYALSAK-ERGIKIII 118 (147)
Q Consensus 60 ~V~IimGS~SDl~~~~~a~~~L~~fGI~~------------ev~V~SAHRtp~~l~~~~~~~~-~~g~~ViI 118 (147)
.-.|.+|+-++.+-+++...-|+..|.+. -|.+ +...+-++..+..+... ..+.+.+|
T Consensus 4 ~y~vQv~s~~~~~~A~~~~~~l~~~g~~~~~~~~~~~~~~yrV~~-G~f~~~~~A~~~~~~l~~~~~~~~~v 74 (76)
T PF05036_consen 4 GYYVQVGSFSSEENAERLLAKLKKKGPDAYVVQVSKGGPWYRVRV-GPFSSREEAEAALRKLKKAAGPDAFV 74 (76)
T ss_dssp EEEEEEEEES-HHHHHHHHHHHHHHT-----EEEEEETTCEEEEE-CCECTCCHHHHHHHHHHHHHTS--EE
T ss_pred cEEEEEEEcCCHHHHHHHHHHHHhcCCCcceEEEecCCceEEEEE-CCCCCHHHHHHHHHHHhHhhCCCCEE
Confidence 46788999999999999999999988863 2333 56677777777776666 56666555
No 279
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=54.79 E-value=65 Score=26.98 Aligned_cols=54 Identities=6% Similarity=0.015 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEcCCCCh-HHHHHHHHHHhhCCceEEEEecCCCC
Q 032094 71 LPVMNDAARTLSDFGVPYEIKILPPHQNC-KEALSYALSAKERGIKIIIVGDGVEA 125 (147)
Q Consensus 71 l~~~~~a~~~L~~fGI~~ev~V~SAHRtp-~~l~~~~~~~~~~g~~ViIAvAG~aA 125 (147)
++.+.++.+.+++.|+...+.+.-+.|.| +.+.++++.+.+-|++.| ..+-..+
T Consensus 111 ~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i-~l~Dt~G 165 (262)
T cd07948 111 IESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKLGVNRV-GIADTVG 165 (262)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHcCCCEE-EECCcCC
Confidence 34455566677788999999998899996 888888888877788754 4444333
No 280
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=54.75 E-value=96 Score=23.82 Aligned_cols=60 Identities=17% Similarity=0.122 Sum_probs=37.1
Q ss_pred EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecC
Q 032094 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 122 (147)
Q Consensus 61 V~IimGS~SD---l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG 122 (147)
|+++..+.+| ....+.+.+.++++|+ ++.+...-..++...++++.....+++-||....
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 64 (265)
T cd06299 2 IGVIVPDIRNPYFASLATAIQDAASAAGY--STIIGNSDENPETENRYLDNLLSQRVDGIIVVPH 64 (265)
T ss_pred EEEEecCCCCccHHHHHHHHHHHHHHcCC--EEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 5666654333 3444556666777875 4445555567777777777777777876666543
No 281
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=54.74 E-value=45 Score=28.76 Aligned_cols=41 Identities=10% Similarity=0.181 Sum_probs=32.0
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHH-hCCCeEEEEEcCCCChH
Q 032094 60 IVGIIMESDLDLPVMNDAARTLSD-FGVPYEIKILPPHQNCK 100 (147)
Q Consensus 60 ~V~IimGS~SDl~~~~~a~~~L~~-fGI~~ev~V~SAHRtp~ 100 (147)
+|++++|.-.|+-.|......|++ -++++.+-+++-|+.++
T Consensus 2 ki~~v~GtRpe~iklapv~~~l~~~~~~~~~lv~tGqH~~~~ 43 (365)
T TIGR03568 2 KICVVTGTRADYGLLRPLLKALQDDPDLELQLIVTGMHLSPE 43 (365)
T ss_pred eEEEEEecChhHHHHHHHHHHHhcCCCCcEEEEEeCCCCChh
Confidence 578888888888888888888876 46777777888887654
No 282
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=54.64 E-value=65 Score=26.50 Aligned_cols=55 Identities=25% Similarity=0.190 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCc
Q 032094 72 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH 126 (147)
Q Consensus 72 ~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAh 126 (147)
....-+..++++.|++.-.+++.-.|+..++.+.+..+...|++=+.++.|-...
T Consensus 45 ~t~~~a~~l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~~iL~l~GD~~~ 99 (274)
T cd00537 45 MTLLAAARILQEGGIEPIPHLTCRDRNRIELQSILLGAHALGIRNILALRGDPPK 99 (274)
T ss_pred hHHHHHHHHHHhcCCCeeeecccCCCCHHHHHHHHHHHHHCCCCeEEEeCCCCCC
Confidence 4556667777788999999999999999999999988888899988888776443
No 283
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=54.57 E-value=72 Score=26.55 Aligned_cols=73 Identities=11% Similarity=0.018 Sum_probs=44.3
Q ss_pred CeEEEEecCCCC-----HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCc-eEEEEecCC---CCchhh
Q 032094 59 PIVGIIMESDLD-----LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI-KIIIVGDGV---EAHLSG 129 (147)
Q Consensus 59 ~~V~IimGS~SD-----l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~-~ViIAvAG~---aAhLpG 129 (147)
.+|+|++|+.|- +.-++.+.+.|++.|....+ +-.+. .+.+.++. ...+ .||++.-|. .+.+++
T Consensus 4 ~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~--~~~~~-~~~~~~l~----~~~~d~vf~~lhG~~ge~~~i~~ 76 (296)
T PRK14569 4 EKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVG--VDASG-KELVAKLL----ELKPDKCFVALHGEDGENGRVSA 76 (296)
T ss_pred cEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEE--EcCCc-hhHHHHhh----ccCCCEEEEeCCCCCCCChHHHH
Confidence 479999999998 46677888899998876432 22332 12222222 2234 567766544 455677
Q ss_pred hhhccccCc
Q 032094 130 TCSCCKFSN 138 (147)
Q Consensus 130 vvAg~T~~~ 138 (147)
++..+-.|.
T Consensus 77 ~le~~gip~ 85 (296)
T PRK14569 77 LLEMLEIKH 85 (296)
T ss_pred HHHHcCCCe
Confidence 666555554
No 284
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=54.38 E-value=1.1e+02 Score=24.26 Aligned_cols=62 Identities=11% Similarity=0.166 Sum_probs=38.5
Q ss_pred EEEEecCCCCHHH----HHHHHHHHHHhCCCeEEEEEcCCC--ChHHHHHHHHHHhhCCceEEEEecC
Q 032094 61 VGIIMESDLDLPV----MNDAARTLSDFGVPYEIKILPPHQ--NCKEALSYALSAKERGIKIIIVGDG 122 (147)
Q Consensus 61 V~IimGS~SDl~~----~~~a~~~L~~fGI~~ev~V~SAHR--tp~~l~~~~~~~~~~g~~ViIAvAG 122 (147)
|++|.-..++-+. .+.+.+.|+++|..+.+....... .++...++++....++++.||....
T Consensus 2 Igvi~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIv~~~ 69 (280)
T cd06303 2 IAVIYPGQQISDYWVRNIASFTARLEELNIPYELTQFSSRPGIDHRLQSQQLNEALQSKPDYLIFTLD 69 (280)
T ss_pred eeEEecCccHHHHHHHHHHHHHHHHHHcCCcEEEEEeccCcccCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 6666654322233 345566677888766655433332 5677777777777788988887654
No 285
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=54.19 E-value=97 Score=24.33 Aligned_cols=61 Identities=16% Similarity=0.223 Sum_probs=31.8
Q ss_pred EEEEecCCCCH---HHHHHHHHHHHHhCCCeEEEEEcCC--CChHHHHHHHHHHhhCCceEEEEecCC
Q 032094 61 VGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPH--QNCKEALSYALSAKERGIKIIIVGDGV 123 (147)
Q Consensus 61 V~IimGS~SDl---~~~~~a~~~L~~fGI~~ev~V~SAH--Rtp~~l~~~~~~~~~~g~~ViIAvAG~ 123 (147)
|+|++.+.+|. .+.+.+.+.++++|+. +-+.... ..++...++++...+++++.||..+..
T Consensus 2 Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~--~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiI~~~~~ 67 (268)
T cd06306 2 LCVLYPHLKDAYWLSVNYGMVEEAKRLGVS--LKLLEAGGYPNLAKQIAQLEDCAAWGADAILLGAVS 67 (268)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHHHHHcCCE--EEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 56666554432 2233444556667654 3333332 234555566666666667777665543
No 286
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=54.03 E-value=61 Score=28.17 Aligned_cols=52 Identities=13% Similarity=0.156 Sum_probs=41.9
Q ss_pred CeEEEEecCCCC-HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHh
Q 032094 59 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAK 110 (147)
Q Consensus 59 ~~V~IimGS~SD-l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~ 110 (147)
.++.|+.|.+.+ .-+++...+.++++||.+++.-.+..-+.+++.+.+++..
T Consensus 34 ~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~e~~l~~~I~~lN 86 (294)
T PRK14187 34 CLIVILVGDDPASQLYVRNKQRKAEMLGLRSETILLPSTISESSLIEKINELN 86 (294)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 477788886654 4556666889999999999999999999999988887653
No 287
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=53.99 E-value=72 Score=30.19 Aligned_cols=69 Identities=12% Similarity=0.124 Sum_probs=53.3
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEE---cCCCChHHHHHHHHHHhhCCceEEEEecCCCCchhhh
Q 032094 61 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKIL---PPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGT 130 (147)
Q Consensus 61 V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~---SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLpGv 130 (147)
+.-|.=+-+|++-++++.+..++.|...+..|+ ++--+++.+.++++.+.+-|++ .|+++-+++.|-+-
T Consensus 113 ~~rifd~lnd~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~Gad-~i~i~Dt~G~l~P~ 184 (593)
T PRK14040 113 VFRVFDAMNDPRNLETALKAVRKVGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMGVD-SLCIKDMAGLLKPY 184 (593)
T ss_pred EEEEeeeCCcHHHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHHHHHHHHHHHHcCCC-EEEECCCCCCcCHH
Confidence 333335789999999999999999998665555 4433789999999988888887 67777877776553
No 288
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=53.89 E-value=84 Score=22.88 Aligned_cols=50 Identities=18% Similarity=0.126 Sum_probs=32.5
Q ss_pred eEEEEecCCCC----HHHHHHHHHHHHHhCCCeEEEEEcCCC---------------ChHHHHHHHHHHhh
Q 032094 60 IVGIIMESDLD----LPVMNDAARTLSDFGVPYEIKILPPHQ---------------NCKEALSYALSAKE 111 (147)
Q Consensus 60 ~V~IimGS~SD----l~~~~~a~~~L~~fGI~~ev~V~SAHR---------------tp~~l~~~~~~~~~ 111 (147)
+|.||.||... ...++.+.+.|++.| +|+.++..+- .++.+.++.+...+
T Consensus 2 kilii~gS~r~~~~t~~l~~~~~~~l~~~g--~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~ 70 (152)
T PF03358_consen 2 KILIINGSPRKNSNTRKLAEAVAEQLEEAG--AEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKE 70 (152)
T ss_dssp EEEEEESSSSTTSHHHHHHHHHHHHHHHTT--EEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHH
T ss_pred EEEEEECcCCCCCHHHHHHHHHHHHHHHcC--CEEEEEeccccchhhcccccccccCCcHHHHHHHhceec
Confidence 79999999853 334555555666665 5667777665 35666777766554
No 289
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=53.68 E-value=77 Score=27.49 Aligned_cols=57 Identities=28% Similarity=0.383 Sum_probs=42.5
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceE-EEE
Q 032094 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKI-IIV 119 (147)
Q Consensus 59 ~~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~V-iIA 119 (147)
-.|-||.-+.||.++..+|..-+ .+|-.|.++|.|.--|.. .++++.+. .|+++ +||
T Consensus 7 VDVRIiVEGAsDvE~iSkalQr~-aLG~eYnITisSIiPTT~--~eIA~raa-eGADlvlIA 64 (290)
T COG4026 7 VDVRIIVEGASDVEVISKALQRL-ALGSEYNITISSIIPTTN--VEIAKRAA-EGADLVLIA 64 (290)
T ss_pred ceEEEEeeccchHHHHHHHHHHh-hhcccceeEEEeeccCch--HHHHHHhh-ccCCEEEEe
Confidence 46999999999999999887664 589999999999876554 45665543 35654 444
No 290
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=53.32 E-value=1.2e+02 Score=24.69 Aligned_cols=75 Identities=12% Similarity=0.208 Sum_probs=59.8
Q ss_pred CeEEEEecCCCC--HHHHHH-HHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCchhhhhhc
Q 032094 59 PIVGIIMESDLD--LPVMND-AARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGTCSC 133 (147)
Q Consensus 59 ~~V~IimGS~SD--l~~~~~-a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLpGvvAg 133 (147)
.+|++++...+| +..+.+ +.+..+++|+...+....+...+..-.+.++.+-.++++.||..+.-+..+.+.+.-
T Consensus 34 ~~i~~~~~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~~~~~d~~~Q~~~i~~~ia~~~daIiv~~~d~~~~~~~v~~ 111 (322)
T COG1879 34 KTIGVVVPTLGNPFFQAVRKGAEAAAKKLGVVVAVVIADAQNDVAKQIAQIEDLIAQGVDAIIINPVDPDALTPAVKK 111 (322)
T ss_pred ceEEEEeccCCChHHHHHHHHHHHHHHHcCCcEEEEecccccChHHHHHHHHHHHHcCCCEEEEcCCChhhhHHHHHH
Confidence 479999998888 233444 566678899877888888888888888877777788999999999999999888753
No 291
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=53.24 E-value=42 Score=24.22 Aligned_cols=38 Identities=13% Similarity=0.130 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHhCCCeEEE-EEcCCCChHHHHHHHHH
Q 032094 71 LPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALS 108 (147)
Q Consensus 71 l~~~~~a~~~L~~fGI~~ev~-V~SAHRtp~~l~~~~~~ 108 (147)
=+.|++|.+.|++.||+|+++ +..--=+.+++.++++.
T Consensus 9 C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~~~l~~ 47 (105)
T cd03035 9 CDTVKKARKWLEARGVAYTFHDYRKDGLDAATLERWLAK 47 (105)
T ss_pred CHHHHHHHHHHHHcCCCeEEEecccCCCCHHHHHHHHHH
Confidence 367999999999999999865 44444467777777763
No 292
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=53.19 E-value=97 Score=25.25 Aligned_cols=56 Identities=11% Similarity=-0.007 Sum_probs=34.0
Q ss_pred EEecCCCCHHHHHH---HHHHH-HHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEe
Q 032094 63 IIMESDLDLPVMND---AARTL-SDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120 (147)
Q Consensus 63 IimGS~SDl~~~~~---a~~~L-~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAv 120 (147)
++.|+..|...-+- +.+-+ +++|+++++.-.. ..++...+.++...++|.++||+.
T Consensus 5 l~~g~~~D~~~n~~~~~G~~~~~~~~gv~~~~~e~~--~~~~~~~~~i~~~~~~g~dlIi~~ 64 (258)
T cd06353 5 VYVGPIGDQGWNYAHDEGRKAAEKALGVEVTYVENV--PEGADAERVLRELAAQGYDLIFGT 64 (258)
T ss_pred EEeCCCCccchhHHHHHHHHHHHHhcCCeEEEEecC--CchHhHHHHHHHHHHcCCCEEEEC
Confidence 44577777554333 33333 4578865554332 267777777777777788888873
No 293
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=53.13 E-value=74 Score=22.06 Aligned_cols=60 Identities=23% Similarity=0.284 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHhCCCe-EEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCchhhhhhc
Q 032094 71 LPVMNDAARTLSDFGVPY-EIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGTCSC 133 (147)
Q Consensus 71 l~~~~~a~~~L~~fGI~~-ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLpGvvAg 133 (147)
....+++.+.++..|++. +..+..-.-.++.+.+++. ..++++|+.++.+...|-.++-|
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~a~---~~~adliV~G~~g~~~l~~~llG 133 (154)
T COG0589 73 EELLAEAKALAEAAGVPVVETEVVEGSPSAEEILELAE---EEDADLIVVGSRGRSGLSRLLLG 133 (154)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEecCCCcHHHHHHHHH---HhCCCEEEECCCCCccccceeee
Confidence 666777888888999995 6666555444577777765 34689999999766666664433
No 294
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=53.00 E-value=50 Score=28.51 Aligned_cols=51 Identities=6% Similarity=0.146 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHHHhCCCeEEEEEcCC-------------CChH-HHHHHHHHHhhCCceEEEEe
Q 032094 70 DLPVMNDAARTLSDFGVPYEIKILPPH-------------QNCK-EALSYALSAKERGIKIIIVG 120 (147)
Q Consensus 70 Dl~~~~~a~~~L~~fGI~~ev~V~SAH-------------Rtp~-~l~~~~~~~~~~g~~ViIAv 120 (147)
....+++.++.+++.+||+++-++-.+ |-|+ +..+++++..++|++|++-+
T Consensus 22 ~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i 86 (339)
T cd06602 22 NVDEVKEVVENMRAAGIPLDVQWNDIDYMDRRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPIL 86 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECcccccCccceecccccCCCccHHHHHHHHHHCCCEEEEEE
Confidence 456677888888999999998777643 5565 34667777778999988755
No 295
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=52.87 E-value=99 Score=23.40 Aligned_cols=61 Identities=16% Similarity=0.286 Sum_probs=38.4
Q ss_pred EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCC
Q 032094 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV 123 (147)
Q Consensus 61 V~IimGS~SD---l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~ 123 (147)
|++|....++ ....+.+.+.+++.|+ ++.+......++...++++....++++.+|.....
T Consensus 2 ig~i~p~~~~~~~~~~~~~~~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~~ 65 (267)
T cd01536 2 IGLVVPSLNNPFWQAMNKGAEAAAKELGV--ELIVLDAQNDVSKQIQQIEDLIAQGVDGIIISPVD 65 (267)
T ss_pred EEEEeccccCHHHHHHHHHHHHHHHhcCc--eEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 6666643323 2344555566667765 55555666678877787777666678888876543
No 296
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=52.69 E-value=64 Score=28.13 Aligned_cols=52 Identities=17% Similarity=0.131 Sum_probs=42.4
Q ss_pred CeEEEEecCCCC-HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHh
Q 032094 59 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAK 110 (147)
Q Consensus 59 ~~V~IimGS~SD-l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~ 110 (147)
.++.|..|.+.+ .-+.+...+.++++||.+++.-.+..-+.+++.+.+++..
T Consensus 41 ~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN 93 (299)
T PLN02516 41 GLAVVIVGSRKDSQTYVNMKRKACAEVGIKSFDVDLPENISEAELISKVHELN 93 (299)
T ss_pred eEEEEEECCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 477888887655 4456667788999999999999999999999999997663
No 297
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=52.50 E-value=65 Score=27.09 Aligned_cols=53 Identities=17% Similarity=0.186 Sum_probs=40.0
Q ss_pred CCeEEEEecCCCCHHHHHHHHHHHHHhCCC-eEEEEEcCC------------CChHHHHHHHHHHhh
Q 032094 58 APIVGIIMESDLDLPVMNDAARTLSDFGVP-YEIKILPPH------------QNCKEALSYALSAKE 111 (147)
Q Consensus 58 ~~~V~IimGS~SDl~~~~~a~~~L~~fGI~-~ev~V~SAH------------Rtp~~l~~~~~~~~~ 111 (147)
.|.++.+.|+. |.+...++++.+++.|.. +|+.+.+++ +.|+.+.++++...+
T Consensus 100 ~p~i~si~G~~-~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~ 165 (299)
T cd02940 100 KILIASIMCEY-NKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVRE 165 (299)
T ss_pred CeEEEEecCCC-CHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHH
Confidence 46888898973 556677777888888876 788888877 358888888876643
No 298
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=52.17 E-value=30 Score=24.82 Aligned_cols=29 Identities=14% Similarity=0.407 Sum_probs=25.1
Q ss_pred EEEecCCCCHHHHHHHHHHHHHhCCCeEE
Q 032094 62 GIIMESDLDLPVMNDAARTLSDFGVPYEI 90 (147)
Q Consensus 62 ~IimGS~SDl~~~~~a~~~L~~fGI~~ev 90 (147)
.++++.|.|-.++.+....+++.||||..
T Consensus 32 ~v~iA~Da~~~vv~~l~~lceek~Ip~v~ 60 (84)
T PRK13600 32 SLIIAEDVEVYLMTRVLSQINQKNIPVSF 60 (84)
T ss_pred EEEEeCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 56777788888999999999999999864
No 299
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=52.13 E-value=1.3e+02 Score=24.39 Aligned_cols=59 Identities=17% Similarity=0.173 Sum_probs=32.8
Q ss_pred EEEEecCC-CC---HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhC--CceEEEEec
Q 032094 61 VGIIMESD-LD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER--GIKIIIVGD 121 (147)
Q Consensus 61 V~IimGS~-SD---l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~--g~~ViIAvA 121 (147)
|+|+.... +| ....+.+.+.++++|+ ++.+......++...++++...++ +++-||...
T Consensus 2 Igvi~~~~~~~~~~~~~~~gi~~~~~~~g~--~v~~~~~~~~~~~~~~~i~~~~~~~~~vdgiIi~~ 66 (305)
T cd06324 2 VVFLNPGKSDEPFWNSVARFMQAAADDLGI--ELEVLYAERDRFLMLQQARTILQRPDKPDALIFTN 66 (305)
T ss_pred eEEecCCCCCCcHHHHHHHHHHHHHHhcCC--eEEEEeCCCCHHHHHHHHHHHHHhccCCCEEEEcC
Confidence 45555443 33 2223345555666665 344445666777676777666666 677666543
No 300
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=52.12 E-value=20 Score=31.19 Aligned_cols=51 Identities=18% Similarity=0.158 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCchhh
Q 032094 74 MNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG 129 (147)
Q Consensus 74 ~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLpG 129 (147)
.+..+..|.+-|+.....|+..|.....+.++.++ ++++|+++|...-+.+
T Consensus 170 GkPla~lL~~~~~~~~aTVtvchs~T~nl~~~~~~-----ADIvIsAvGkp~~i~~ 220 (293)
T PRK14185 170 GKPMAQLMMQKAYPGDCTVTVCHSRSKNLKKECLE-----ADIIIAALGQPEFVKA 220 (293)
T ss_pred hHHHHHHHHcCCCCCCCEEEEecCCCCCHHHHHhh-----CCEEEEccCCcCccCH
Confidence 33444444333332356777778877778888754 6999999999987764
No 301
>COG4002 Predicted phosphotransacetylase [General function prediction only]
Probab=52.07 E-value=49 Score=28.37 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=14.1
Q ss_pred HHHhhCCceEEEEecCCCCch
Q 032094 107 LSAKERGIKIIIVGDGVEAHL 127 (147)
Q Consensus 107 ~~~~~~g~~ViIAvAG~aAhL 127 (147)
+++-++| .||||+-|-++-|
T Consensus 186 Eealkdg-nvIia~dGItGNL 205 (256)
T COG4002 186 EEALKDG-NVIIAVDGITGNL 205 (256)
T ss_pred HHHhhcC-CEEEEecCccchh
Confidence 3333455 8999999987765
No 302
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=51.86 E-value=1e+02 Score=24.01 Aligned_cols=41 Identities=17% Similarity=0.056 Sum_probs=24.2
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHH
Q 032094 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSY 105 (147)
Q Consensus 59 ~~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~ 105 (147)
+++++|+|+.+ .+...+++.|-+-|. +|+...|.++++.+.
T Consensus 9 ~k~~lItGas~--giG~~ia~~L~~~G~----~vvl~~r~~~~~~~~ 49 (254)
T PRK08085 9 GKNILITGSAQ--GIGFLLATGLAEYGA----EIIINDITAERAELA 49 (254)
T ss_pred CCEEEEECCCC--hHHHHHHHHHHHcCC----EEEEEcCCHHHHHHH
Confidence 46788888877 445566666666663 233345555554443
No 303
>PRK07109 short chain dehydrogenase; Provisional
Probab=51.80 E-value=1.2e+02 Score=25.56 Aligned_cols=41 Identities=17% Similarity=0.175 Sum_probs=22.5
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHH
Q 032094 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSY 105 (147)
Q Consensus 59 ~~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~ 105 (147)
.++.+|+|..+ .+...+++.|-+.|. ++.++ -|.++.+.++
T Consensus 8 ~k~vlITGas~--gIG~~la~~la~~G~--~Vvl~--~R~~~~l~~~ 48 (334)
T PRK07109 8 RQVVVITGASA--GVGRATARAFARRGA--KVVLL--ARGEEGLEAL 48 (334)
T ss_pred CCEEEEECCCC--HHHHHHHHHHHHCCC--EEEEE--ECCHHHHHHH
Confidence 35777777776 445556666666563 33332 3555544443
No 304
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=51.77 E-value=30 Score=22.52 Aligned_cols=24 Identities=38% Similarity=0.750 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEcC
Q 032094 72 PVMNDAARTLSDFGVPYEIKILPP 95 (147)
Q Consensus 72 ~~~~~a~~~L~~fGI~~ev~V~SA 95 (147)
|.+.++.-.|+.+|+++++.+.-.
T Consensus 3 P~a~Rv~i~l~~~gl~~~~~~v~~ 26 (70)
T PF13409_consen 3 PFAHRVRIALEEKGLPYEIKVVPL 26 (70)
T ss_dssp HHHHHHHHHHHHHTGTCEEEEEET
T ss_pred hHhHHHHHHHHHhCCCCEEEEEee
Confidence 678899999999999999998844
No 305
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=51.58 E-value=1.1e+02 Score=23.95 Aligned_cols=60 Identities=20% Similarity=0.162 Sum_probs=31.1
Q ss_pred EEEEecCC-CCH---HHHHHHHHHHHHhCCCeEEEEEcCCC-ChHHHHHHHHHHhhCCceEEEEecC
Q 032094 61 VGIIMESD-LDL---PVMNDAARTLSDFGVPYEIKILPPHQ-NCKEALSYALSAKERGIKIIIVGDG 122 (147)
Q Consensus 61 V~IimGS~-SDl---~~~~~a~~~L~~fGI~~ev~V~SAHR-tp~~l~~~~~~~~~~g~~ViIAvAG 122 (147)
|++++.+. +|- ...+.+.+.+++.|+... +...-. .++...+.++....++++.+|....
T Consensus 2 i~~i~~~~~~~~~~~~~~~g~~~~~~~~g~~v~--~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 66 (271)
T cd06312 2 IAFVTHGPAGDPFWTVVKNGAEDAAKDLGVDVE--YRGPETFDVADMARLIEAAIAAKPDGIVVTIP 66 (271)
T ss_pred EEEecCCCCCCcHHHHHHHHHHHHHHHhCCEEE--EECCCCCCHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 56666544 331 233444455556665433 333333 5666666666655566666665543
No 306
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=51.50 E-value=33 Score=27.40 Aligned_cols=75 Identities=11% Similarity=-0.044 Sum_probs=52.5
Q ss_pred EecCCCC-HHHHHHHHHHHHHhCC---------CeEEEEEcCCCChHHHHHHHHHHh------hCCceEEEEecCCCCch
Q 032094 64 IMESDLD-LPVMNDAARTLSDFGV---------PYEIKILPPHQNCKEALSYALSAK------ERGIKIIIVGDGVEAHL 127 (147)
Q Consensus 64 imGS~SD-l~~~~~a~~~L~~fGI---------~~ev~V~SAHRtp~~l~~~~~~~~------~~g~~ViIAvAG~aAhL 127 (147)
.+|-..| +.++.+++..|..-+- ++.+.....++.|+++..+.+... ..++++|++++-+.--+
T Consensus 20 ~~~~ia~el~vs~~t~~~l~~~~~~~~~~~~~~~~yid~~~~~~~~~~l~~i~~~la~~i~~~~~~~D~Ivgi~~gG~~~ 99 (200)
T PRK02277 20 STGEIADELNVSRETATWLLTRAKKLEKAPAPKDIHIDWSSIGSSSSRLRYIASAMADMLEKEDEEVDVVVGIAKSGVPL 99 (200)
T ss_pred ChhhhhhhhcchHHHHHHHHhcccCCCCCCCCCCEEEEChhhccCHHHHHHHHHHHHHHHHhcCCCCCEEEeeccCCHHH
Confidence 3455555 7789999999864322 355677788999987776554332 24579999999888888
Q ss_pred hhhhhccccCc
Q 032094 128 SGTCSCCKFSN 138 (147)
Q Consensus 128 pGvvAg~T~~~ 138 (147)
+..+|-....+
T Consensus 100 A~~lA~~L~~~ 110 (200)
T PRK02277 100 ATLVADELGKD 110 (200)
T ss_pred HHHHHHHhCCC
Confidence 88888655444
No 307
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=50.94 E-value=1.1e+02 Score=23.25 Aligned_cols=58 Identities=19% Similarity=0.145 Sum_probs=34.8
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEe
Q 032094 61 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120 (147)
Q Consensus 61 V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAv 120 (147)
|=|+.| -|.+..++....|+.+|++..+=--.+.-...-++++.+...+-++-||+.-
T Consensus 2 VFIvhg--~~~~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~T 59 (125)
T PF10137_consen 2 VFIVHG--RDLAAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFT 59 (125)
T ss_pred EEEEeC--CCHHHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEc
Confidence 445555 8889999999999999987554333343333334444444444445555543
No 308
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=50.87 E-value=64 Score=27.88 Aligned_cols=52 Identities=15% Similarity=0.132 Sum_probs=42.2
Q ss_pred CeEEEEecCCCC-HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHh
Q 032094 59 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAK 110 (147)
Q Consensus 59 ~~V~IimGS~SD-l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~ 110 (147)
.++.|..|.+.| .-+++...+.++++||.+++.-...+-+.+++.+.++...
T Consensus 33 ~Laii~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN 85 (281)
T PRK14183 33 GLAVILVGDDPASHTYVKMKAKACDRVGIYSITHEMPSTISQKEILETIAMMN 85 (281)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 477888887654 4566777888999999999999999999999999887653
No 309
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=50.79 E-value=65 Score=26.41 Aligned_cols=61 Identities=13% Similarity=0.024 Sum_probs=42.5
Q ss_pred EEEEecCCCCH--------------HHHHHHHHHHHHhCCCeEEEEEcCCCC-hHHHHHHHHHHhhCCceEEEEecC
Q 032094 61 VGIIMESDLDL--------------PVMNDAARTLSDFGVPYEIKILPPHQN-CKEALSYALSAKERGIKIIIVGDG 122 (147)
Q Consensus 61 V~IimGS~SDl--------------~~~~~a~~~L~~fGI~~ev~V~SAHRt-p~~l~~~~~~~~~~g~~ViIAvAG 122 (147)
..-+..|.||. +-+.++.+.+++.|....+...-+.|. |+.+.++++.+.+-|++.| ..+-
T Consensus 85 ~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i-~l~D 160 (259)
T cd07939 85 AVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAGADRL-RFAD 160 (259)
T ss_pred EEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCCCCEE-EeCC
Confidence 33444477886 455677778888998777777777765 7888888888777777653 4433
No 310
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=50.59 E-value=39 Score=24.25 Aligned_cols=38 Identities=13% Similarity=0.094 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHH
Q 032094 69 LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYA 106 (147)
Q Consensus 69 SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~ 106 (147)
.+=++++++.-+|.+-||+|++.-+.....|+.+.++-
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~~~~~~n 57 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPEDLKDLA 57 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCCCCHHHHHhC
Confidence 45589999999999999999998888888887766653
No 311
>PF01866 Diphthamide_syn: Putative diphthamide synthesis protein; InterPro: IPR002728 Members of this family include Q16439 from SWISSPROT, a candidate tumour suppressor gene [], and DPH2 from yeast P32461 from SWISSPROT [], which confers resistance to diphtheria toxin and has been found to be involved in diphthamide synthesis. Diphtheria toxin inhibits eukaryotic protein synthesis by ADP-ribosylating diphthamide, a posttranslationally modified histidine residue present in EF2. The exact function of the members of this family is unknown.; GO: 0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine, 0005737 cytoplasm; PDB: 3LZD_B 3LZC_A.
Probab=50.45 E-value=30 Score=29.47 Aligned_cols=56 Identities=14% Similarity=0.121 Sum_probs=36.9
Q ss_pred CeEEEEecC---CCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEec
Q 032094 59 PIVGIIMES---DLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (147)
Q Consensus 59 ~~V~IimGS---~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvA 121 (147)
..+|||+|+ .--+..++...+.|++-|..+.+-+. =.=+|+++..|- ++++||-+|
T Consensus 210 ~~~GIiv~tl~~q~~~~~~~~l~~~l~~~gkk~y~~~~-~~i~~~kL~nf~------eid~fV~~a 268 (307)
T PF01866_consen 210 KTFGIIVGTLGGQGYLELIKRLKKLLKKAGKKSYTLSV-GEINPAKLANFP------EIDAFVQIA 268 (307)
T ss_dssp -EEEEEEE-STTT--HHHHHHHHHHHHHTT-EEEEEEE-SS--GGGGTTS---------SEEEE-S
T ss_pred CEEEEEEecCCCCCCHHHHHHHHHHHHHcCCEEEEEEE-CCCCHHHHhcCc------ccCEEEEec
Confidence 479999995 77889999999999999998654444 566888888884 267777665
No 312
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=50.39 E-value=1.2e+02 Score=23.48 Aligned_cols=61 Identities=11% Similarity=0.165 Sum_probs=38.7
Q ss_pred EEEEecCCCCH---HHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCC
Q 032094 61 VGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV 123 (147)
Q Consensus 61 V~IimGS~SDl---~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~ 123 (147)
|++++.+.+|. ...+.+.+.+++.|. ++.+...-..+++..++++....++++.+|..+..
T Consensus 2 igvi~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~ 65 (264)
T cd06274 2 IGLIIPDLENRSFARIAKRLEALARERGY--QLLIACSDDDPETERETVETLIARQVDALIVAGSL 65 (264)
T ss_pred EEEEeccccCchHHHHHHHHHHHHHHCCC--EEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 66777664442 222344455566765 45555556677777788877777888888877654
No 313
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=50.32 E-value=54 Score=29.08 Aligned_cols=69 Identities=12% Similarity=-0.002 Sum_probs=46.8
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhCCCeE-EEEEcCCCChHH-HHHHHHHHhhCCceEEEEecCCCCchhhhhhccc
Q 032094 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYE-IKILPPHQNCKE-ALSYALSAKERGIKIIIVGDGVEAHLSGTCSCCK 135 (147)
Q Consensus 60 ~V~IimGS~SDl~~~~~a~~~L~~fGI~~e-v~V~SAHRtp~~-l~~~~~~~~~~g~~ViIAvAG~aAhLpGvvAg~T 135 (147)
.+.|-+||.+ ..+++|.+.|++-|+..- +++...+=.|.+ +.++++ +.+.+|++==..+.|...+.+.+
T Consensus 277 ~~IV~~GSt~--~~~keAv~~lr~~G~kvg~l~~~~~~PfP~~~i~~~l~-----~~k~viVvE~n~Gql~~~v~~~~ 347 (375)
T PRK09627 277 ILIIAYGSVS--LSAKEAIKRLREEGIKVGLFRPITLWPSPAKKLKEIGD-----KFEKILVIELNMGQYLEEIERVM 347 (375)
T ss_pred EEEEEeCCCH--HHHHHHHHHHHhcCCeEEEEEeCeEECCCHHHHHHHHh-----cCCEEEEEcCChHHHHHHHHHHh
Confidence 5666777764 789999999999888755 455556667865 666664 35666665544466666666544
No 314
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=50.14 E-value=1.1e+02 Score=23.28 Aligned_cols=61 Identities=8% Similarity=0.092 Sum_probs=33.8
Q ss_pred EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCC
Q 032094 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV 123 (147)
Q Consensus 61 V~IimGS~SD---l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~ 123 (147)
|+|+..+.+| ....+.+.+.++++|+... +...-..++...+.++....++++.+|...+.
T Consensus 2 igvv~~~~~~~~~~~~~~~i~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~ 65 (266)
T cd06282 2 VGVVLPSLANPVFAECVQGIQEEARAAGYSLL--LATTDYDAEREADAVETLLRQRVDGLILTVAD 65 (266)
T ss_pred eEEEeCCCCcchHHHHHHHHHHHHHHCCCEEE--EeeCCCCHHHHHHHHHHHHhcCCCEEEEecCC
Confidence 4555544444 3344555666677765443 33334456666666666555667777765443
No 315
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=49.84 E-value=89 Score=24.32 Aligned_cols=73 Identities=11% Similarity=-0.013 Sum_probs=44.9
Q ss_pred CeEEEEecCCCCH--HHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCchhhhhhcccc
Q 032094 59 PIVGIIMESDLDL--PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGTCSCCKF 136 (147)
Q Consensus 59 ~~V~IimGS~SDl--~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLpGvvAg~T~ 136 (147)
.+|.|+.++.+|. .-..++++.|++.||. +.+++..=.++.+.++++ .-|=+-|.+... .+|+-++.-+++
T Consensus 108 ~~iiil~sd~~~~~~~~~~~~~~~l~~~~I~--v~~IgiG~~~~~L~~ia~---~tgG~~~~~~~~--~~l~~~~~~~~~ 180 (183)
T cd01453 108 REVLIIFSSLSTCDPGNIYETIDKLKKENIR--VSVIGLSAEMHICKEICK---ATNGTYKVILDE--THLKELLLEHVT 180 (183)
T ss_pred eEEEEEEcCCCcCChhhHHHHHHHHHHcCcE--EEEEEechHHHHHHHHHH---HhCCeeEeeCCH--HHHHHHHHhcCC
Confidence 3566666554433 2345678888999986 444444323344555544 333477776553 699999988887
Q ss_pred Cc
Q 032094 137 SN 138 (147)
Q Consensus 137 ~~ 138 (147)
|+
T Consensus 181 p~ 182 (183)
T cd01453 181 PP 182 (183)
T ss_pred CC
Confidence 75
No 316
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=49.66 E-value=52 Score=26.65 Aligned_cols=66 Identities=18% Similarity=0.159 Sum_probs=44.4
Q ss_pred HHHHHHHHHhCCCeEEEEEcCCCC-------hHHHHHHHHHHhhCCceEEEEecCCCCchhhhhhccccCcceeec
Q 032094 75 NDAARTLSDFGVPYEIKILPPHQN-------CKEALSYALSAKERGIKIIIVGDGVEAHLSGTCSCCKFSNTCYSC 143 (147)
Q Consensus 75 ~~a~~~L~~fGI~~ev~V~SAHRt-------p~~l~~~~~~~~~~g~~ViIAvAG~aAhLpGvvAg~T~~~~~~~~ 143 (147)
+.+.+..+++.=..|+-|++.|=. .++..++++..-+.|+++||+ .-.|..-=+--.-.+++-||+
T Consensus 171 ~~i~~~i~~~r~~~D~vIv~~HwG~e~~~~p~~~q~~~a~~lidaGaDiIiG---~HpHv~q~~E~y~~~~I~YSL 243 (250)
T PF09587_consen 171 ERIKEDIREARKKADVVIVSLHWGIEYENYPTPEQRELARALIDAGADIIIG---HHPHVIQPVEIYKGKPIFYSL 243 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEEeccCCCCCCCCCHHHHHHHHHHHHcCCCEEEe---CCCCcccceEEECCEEEEEeC
Confidence 555566666665689999999987 667788888888889999984 444443333223333455664
No 317
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=49.41 E-value=53 Score=25.38 Aligned_cols=56 Identities=20% Similarity=0.272 Sum_probs=35.0
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEec
Q 032094 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (147)
Q Consensus 59 ~~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvA 121 (147)
++|+++.= .+.++-+.... +-||++...... .+++++...++.+...|++|||++.
T Consensus 78 ~~Iavv~~-~~~~~~~~~~~---~ll~~~i~~~~~---~~~~e~~~~i~~~~~~G~~viVGg~ 133 (176)
T PF06506_consen 78 PKIAVVGY-PNIIPGLESIE---ELLGVDIKIYPY---DSEEEIEAAIKQAKAEGVDVIVGGG 133 (176)
T ss_dssp SEEEEEEE-SS-SCCHHHHH---HHHT-EEEEEEE---SSHHHHHHHHHHHHHTT--EEEESH
T ss_pred CcEEEEec-ccccHHHHHHH---HHhCCceEEEEE---CCHHHHHHHHHHHHHcCCcEEECCH
Confidence 57887754 33333344333 445775444433 4799999999999999999999874
No 318
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=49.35 E-value=1.4e+02 Score=27.58 Aligned_cols=100 Identities=18% Similarity=0.196 Sum_probs=59.2
Q ss_pred cCChHHHhhcccccccccCCCcccccCCCCCCCCCCCeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCC----CC
Q 032094 23 ASSNGSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPH----QN 98 (147)
Q Consensus 23 a~~l~~~k~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAH----Rt 98 (147)
+.+...+-..|+.+-++|..=-.|.+..-.+-|.-+.+||||++.++ .....+..++++--=.+++-|...- -.
T Consensus 100 p~G~G~L~~~~E~lK~kL~aEGlFd~~~KkpLP~~p~~IGVITS~tg--AairDIl~~~~rR~P~~~viv~pt~VQG~~A 177 (440)
T COG1570 100 PAGLGALYLAFEQLKAKLAAEGLFDPERKKPLPFFPKKIGVITSPTG--AALRDILHTLSRRFPSVEVIVYPTLVQGEGA 177 (440)
T ss_pred cCChhHHHHHHHHHHHHHHhCCCcChhhcCCCCCCCCeEEEEcCCch--HHHHHHHHHHHhhCCCCeEEEEeccccCCCc
Confidence 34445566666666544432222344432344555568999999875 6777788888653322455544321 23
Q ss_pred hHHHHHHHHHHhhCC-ceEEEEecCCC
Q 032094 99 CKEALSYALSAKERG-IKIIIVGDGVE 124 (147)
Q Consensus 99 p~~l~~~~~~~~~~g-~~ViIAvAG~a 124 (147)
+.++.+-++.+..++ ++|+|.+=|+-
T Consensus 178 ~~eIv~aI~~an~~~~~DvlIVaRGGG 204 (440)
T COG1570 178 AEEIVEAIERANQRGDVDVLIVARGGG 204 (440)
T ss_pred HHHHHHHHHHhhccCCCCEEEEecCcc
Confidence 556666666666666 89999998873
No 319
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=49.32 E-value=1.3e+02 Score=23.80 Aligned_cols=59 Identities=12% Similarity=0.143 Sum_probs=36.7
Q ss_pred eEEEEecC--CCCHH----HHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEec
Q 032094 60 IVGIIMES--DLDLP----VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (147)
Q Consensus 60 ~V~IimGS--~SDl~----~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvA 121 (147)
+|++++-+ ..|-| +.+.+.+.++++|+. +.+.... .++...++++...+++++.||...
T Consensus 1 ~I~~i~~~~~~~~~~f~~~~~~gi~~~~~~~gy~--~~i~~~~-~~~~~~~~i~~l~~~~vdgiI~~~ 65 (265)
T cd06354 1 KVALVTDVGGLGDKSFNQSAWEGLERAAKELGIE--YKYVESK-SDADYEPNLEQLADAGYDLIVGVG 65 (265)
T ss_pred CEEEEeCCCCcCchhHHHHHHHHHHHHHHHcCCe--EEEEecC-CHHHHHHHHHHHHhCCCCEEEEcC
Confidence 36677743 13434 344555777788864 4444444 566667777777777888888764
No 320
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=49.29 E-value=40 Score=26.45 Aligned_cols=73 Identities=16% Similarity=0.183 Sum_probs=43.5
Q ss_pred EEecCCCC-HHHHHHHHHHHHHhCCCe-EEEEEcCC---CChHHHHHHHHHHhhC--CceEEEEecCC-----CCchhhh
Q 032094 63 IIMESDLD-LPVMNDAARTLSDFGVPY-EIKILPPH---QNCKEALSYALSAKER--GIKIIIVGDGV-----EAHLSGT 130 (147)
Q Consensus 63 IimGS~SD-l~~~~~a~~~L~~fGI~~-ev~V~SAH---Rtp~~l~~~~~~~~~~--g~~ViIAvAG~-----aAhLpGv 130 (147)
|+.|||-. .+.=+...+.|++.|.++ |++--+.. -.|+...+..+...+. ..-|+|++.|. +|-.||+
T Consensus 3 I~igsDhaG~~lK~~l~~~L~~~g~eV~D~G~~~~~~~~dYpd~a~~va~~V~~g~~~~GIliCGtGiG~siaANK~~GI 82 (148)
T PRK05571 3 IAIGSDHAGFELKEEIIEHLEELGHEVIDLGPDSYDASVDYPDYAKKVAEAVVAGEADRGILICGTGIGMSIAANKVKGI 82 (148)
T ss_pred EEEEeCCchHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCCcHHHHHHHhcCCCe
Confidence 67888888 556667788999998753 23332222 2456555555554333 24678888774 4445555
Q ss_pred hhccc
Q 032094 131 CSCCK 135 (147)
Q Consensus 131 vAg~T 135 (147)
-|++.
T Consensus 83 RAA~~ 87 (148)
T PRK05571 83 RAALC 87 (148)
T ss_pred EEEEE
Confidence 55543
No 321
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=49.26 E-value=23 Score=30.87 Aligned_cols=37 Identities=11% Similarity=0.158 Sum_probs=27.6
Q ss_pred EEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCchhhhh
Q 032094 90 IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGTC 131 (147)
Q Consensus 90 v~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLpGvv 131 (147)
..|...||.+..+.++++ ..+|+|.+.|....+.++.
T Consensus 184 atVtv~~~~t~~l~e~~~-----~ADIVIsavg~~~~v~~~~ 220 (301)
T PRK14194 184 CSVTVVHSRSTDAKALCR-----QADIVVAAVGRPRLIDADW 220 (301)
T ss_pred CEEEEECCCCCCHHHHHh-----cCCEEEEecCChhcccHhh
Confidence 345556887776666664 3699999999998888775
No 322
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=49.26 E-value=41 Score=23.78 Aligned_cols=59 Identities=8% Similarity=-0.011 Sum_probs=40.5
Q ss_pred CceeeecCChHHHhhcccccccccCCCcccccCCCCCCCCCCCeEEEEecCCCCHHHHHHHHHHHHHhCCCeE
Q 032094 17 GTIPVLASSNGSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYE 89 (147)
Q Consensus 17 ghitVta~~l~~~k~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~SDl~~~~~a~~~L~~fGI~~e 89 (147)
.+++|.+++...++.+++|.-+..+.. - + ..-++...+.|...-+++...+++.|+++.
T Consensus 31 A~v~vis~~~~~~~~~i~~~~~~~~~~-----------l-~--~~~lV~~at~d~~~n~~i~~~a~~~~i~vn 89 (103)
T PF13241_consen 31 AKVTVISPEIEFSEGLIQLIRREFEED-----------L-D--GADLVFAATDDPELNEAIYADARARGILVN 89 (103)
T ss_dssp BEEEEEESSEHHHHTSCEEEESS-GGG-----------C-T--TESEEEE-SS-HHHHHHHHHHHHHTTSEEE
T ss_pred CEEEEECCchhhhhhHHHHHhhhHHHH-----------H-h--hheEEEecCCCHHHHHHHHHHHhhCCEEEE
Confidence 578899999877788888875444311 1 1 234555677888888999999999999854
No 323
>PF14528 LAGLIDADG_3: LAGLIDADG-like domain; PDB: 2CW7_A 2CW8_A 2VS8_F 2VS7_G 1B24_A 1DQ3_A 2DCH_X.
Probab=48.97 E-value=24 Score=23.28 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=18.7
Q ss_pred CCCHHHHHHHHHHHHHhCCCeEEEE
Q 032094 68 DLDLPVMNDAARTLSDFGVPYEIKI 92 (147)
Q Consensus 68 ~SDl~~~~~a~~~L~~fGI~~ev~V 92 (147)
+.|.+.++.....|.+|||...+..
T Consensus 28 ~~s~~ll~~v~~lL~~lGi~~~i~~ 52 (77)
T PF14528_consen 28 SKSKELLEDVQKLLLRLGIKASIYE 52 (77)
T ss_dssp ES-HHHHHHHHHHHHHTT--EEEEE
T ss_pred ECCHHHHHHHHHHHHHCCCeeEEEE
Confidence 4788999999999999999876553
No 324
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=48.79 E-value=1.1e+02 Score=22.88 Aligned_cols=66 Identities=9% Similarity=0.095 Sum_probs=43.4
Q ss_pred EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCchh
Q 032094 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS 128 (147)
Q Consensus 61 V~IimGS~SD---l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLp 128 (147)
|+++.-+.++ ....+.+.+.++++|+. +.+......|++..+.++...+++++.+|........+.
T Consensus 2 i~~v~~~~~~~~~~~~~~g~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~iii~~~~~~~~~ 70 (264)
T cd06267 2 IGVIVPDISNPFFAELLRGIEEAAREAGYS--VLLCNSDEDPEKEREALELLLSRRVDGIILAPSRLDDEL 70 (264)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHcCCE--EEEEcCCCCHHHHHHHHHHHHHcCcCEEEEecCCcchHH
Confidence 4555544322 23344555666777754 455566677888888888888888999998887766543
No 325
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=48.73 E-value=24 Score=30.56 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=24.6
Q ss_pred EEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCchh
Q 032094 90 IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS 128 (147)
Q Consensus 90 v~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLp 128 (147)
.+|...|...+.+.++.+. ++++|+++|...-+.
T Consensus 189 atVtv~hs~T~~l~~~~~~-----ADIvv~AvG~p~~i~ 222 (287)
T PRK14176 189 ATVSVCHVFTDDLKKYTLD-----ADILVVATGVKHLIK 222 (287)
T ss_pred CEEEEEeccCCCHHHHHhh-----CCEEEEccCCccccC
Confidence 4667778666667776643 699999999976543
No 326
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=48.52 E-value=68 Score=27.19 Aligned_cols=52 Identities=15% Similarity=0.111 Sum_probs=39.8
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceE
Q 032094 65 MESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKI 116 (147)
Q Consensus 65 mGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~V 116 (147)
.|....+..+.++.+.|++.|+++.+.++--.-+.+++.++++.+.+.|++-
T Consensus 125 rg~~g~f~~v~~~i~~l~~~g~~v~v~~vv~~~N~~~l~~~~~~~~~lg~~~ 176 (358)
T TIGR02109 125 AGYKNAFEQKLAMARAVKAAGLPLTLNFVIHRHNIDQIPEIIELAIELGADR 176 (358)
T ss_pred cCCccHHHHHHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHHHHHcCCCE
Confidence 4544456777778888999999988877656667888988888887777753
No 327
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=48.29 E-value=52 Score=24.58 Aligned_cols=39 Identities=13% Similarity=0.060 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEc-CCCChHHHHHHHHHHh
Q 032094 72 PVMNDAARTLSDFGVPYEIKILP-PHQNCKEALSYALSAK 110 (147)
Q Consensus 72 ~~~~~a~~~L~~fGI~~ev~V~S-AHRtp~~l~~~~~~~~ 110 (147)
..+++|.+.|++.||+|++.-.. =-=+.+++.++++..+
T Consensus 12 ~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l~~~g 51 (117)
T COG1393 12 STCRKALAWLEEHGIEYTFIDYLKTPPSREELKKILSKLG 51 (117)
T ss_pred hHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHHHHcC
Confidence 38999999999999999866444 3445677777776543
No 328
>PRK10927 essential cell division protein FtsN; Provisional
Probab=47.96 E-value=1.9e+02 Score=25.79 Aligned_cols=67 Identities=18% Similarity=0.043 Sum_probs=51.7
Q ss_pred CCCeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEE--------EEcCCCChHHHHHHHHHHhhCCc-eEEEEecCC
Q 032094 57 DAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIK--------ILPPHQNCKEALSYALSAKERGI-KIIIVGDGV 123 (147)
Q Consensus 57 ~~~~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~--------V~SAHRtp~~l~~~~~~~~~~g~-~ViIAvAG~ 123 (147)
+...-.|=.||-++.+-++....-|...|++..+. ++++.-.-+++++........|+ .+|+..+|+
T Consensus 244 ~~~~~~VQvGSF~n~~nAE~LrAkLa~~G~~A~I~~~g~~~RVrVGPf~sr~eAe~a~~rLk~aGis~ci~~a~gG 319 (319)
T PRK10927 244 DERRWMVQCGSFRGAEQAETVRAQLAFEGFDSKITTNNGWNRVVIGPVKGKENADSTLNRLKMAGHTNCIRLAAGG 319 (319)
T ss_pred CCCcEEEEeCccCCHHHHHHHHHHHHHcCCeeEEccCCcEEEEEeCCCCCHHHHHHHHHHHHHCCCCceeeccCCC
Confidence 33678999999999999999999999999875532 24466678888888877777777 566655553
No 329
>PRK09389 (R)-citramalate synthase; Provisional
Probab=47.85 E-value=1.6e+02 Score=27.04 Aligned_cols=71 Identities=15% Similarity=0.039 Sum_probs=49.5
Q ss_pred EEEEecCCCCH--------------HHHHHHHHHHHHhCCCeEEEEEcCCCC-hHHHHHHHHHHhhCCceEEEEecCCCC
Q 032094 61 VGIIMESDLDL--------------PVMNDAARTLSDFGVPYEIKILPPHQN-CKEALSYALSAKERGIKIIIVGDGVEA 125 (147)
Q Consensus 61 V~IimGS~SDl--------------~~~~~a~~~L~~fGI~~ev~V~SAHRt-p~~l~~~~~~~~~~g~~ViIAvAG~aA 125 (147)
+.-+..+.||+ ..+.++.+.+++.|..+++..-.+.|+ |+.+.++++.+.+-|++.|.-..=.-.
T Consensus 89 ~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DTvG~ 168 (488)
T PRK09389 89 SVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAGIEAGADRICFCDTVGI 168 (488)
T ss_pred EEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence 45555688998 445566677788999888888889988 677778888887778876544433333
Q ss_pred chhhhh
Q 032094 126 HLSGTC 131 (147)
Q Consensus 126 hLpGvv 131 (147)
.+|.-+
T Consensus 169 ~~P~~~ 174 (488)
T PRK09389 169 LTPEKT 174 (488)
T ss_pred cCHHHH
Confidence 444433
No 330
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=47.77 E-value=77 Score=26.14 Aligned_cols=72 Identities=13% Similarity=0.151 Sum_probs=42.8
Q ss_pred eEEEEecCCCC-----HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceE-EEEecC---CCCchhhh
Q 032094 60 IVGIIMESDLD-----LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKI-IIVGDG---VEAHLSGT 130 (147)
Q Consensus 60 ~V~IimGS~SD-----l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~V-iIAvAG---~aAhLpGv 130 (147)
+|+|++|+.|= +..++.+.+.|+++|..+++ +-..+. +....... ..+++ |+.+-| ..++++++
T Consensus 2 ~v~v~~gg~s~e~~~sl~s~~~i~~al~~~g~~~~~--i~~~~~---~~~~~~~~--~~~D~v~~~~~g~~ge~~~~~~~ 74 (299)
T PRK14571 2 RVALLMGGVSREREISLRSGERVKKALEKLGYEVTV--FDVDED---FLKKVDQL--KSFDVVFNVLHGTFGEDGTLQAI 74 (299)
T ss_pred eEEEEeCCCCCCccchHHHHHHHHHHHHHcCCeEEE--EccCch---HHHHhhhc--cCCCEEEEeCCCCCCCccHHHHH
Confidence 69999999884 55677888999999886543 223322 11111111 22444 444433 36788887
Q ss_pred hhccccCc
Q 032094 131 CSCCKFSN 138 (147)
Q Consensus 131 vAg~T~~~ 138 (147)
+..+-.|.
T Consensus 75 le~~gip~ 82 (299)
T PRK14571 75 LDFLGIRY 82 (299)
T ss_pred HHHcCCCc
Confidence 77655554
No 331
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=47.61 E-value=98 Score=24.31 Aligned_cols=39 Identities=8% Similarity=0.048 Sum_probs=24.2
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHH
Q 032094 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEAL 103 (147)
Q Consensus 59 ~~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~ 103 (147)
+++++|+|+.+.+ ...+++.|.+.|.. | +-..|.++++.
T Consensus 6 ~k~vlVtGas~gI--G~~ia~~l~~~G~~--V--~~~~r~~~~~~ 44 (263)
T PRK06200 6 GQVALITGGGSGI--GRALVERFLAEGAR--V--AVLERSAEKLA 44 (263)
T ss_pred CCEEEEeCCCchH--HHHHHHHHHHCCCE--E--EEEeCCHHHHH
Confidence 4688999998854 56677777776753 3 22345554443
No 332
>cd04336 YeaK YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function. The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans.
Probab=47.52 E-value=36 Score=25.33 Aligned_cols=44 Identities=16% Similarity=0.266 Sum_probs=28.6
Q ss_pred HHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEE
Q 032094 75 NDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIII 118 (147)
Q Consensus 75 ~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViI 118 (147)
++..+.|+++||+|++.-...-++.+++.+.......+.+|.++
T Consensus 2 ~~v~~~L~~~~i~y~~~~~~~~~t~~~~a~~~~~~~~~~~Ktll 45 (153)
T cd04336 2 ERLQELLNTNGARFRVLDHPPEGTSEEVAAIRGTELGQGAKALL 45 (153)
T ss_pred HHHHHHHHHCCCCEEEEecCCCCCHHHHHHHhCCCcccceEEEE
Confidence 46778899999999987665556666666554332333344444
No 333
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=47.32 E-value=43 Score=21.89 Aligned_cols=31 Identities=23% Similarity=0.380 Sum_probs=24.6
Q ss_pred EecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCC
Q 032094 64 IMESDLDLPVMNDAARTLSDFGVPYEIKILPPH 96 (147)
Q Consensus 64 imGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAH 96 (147)
+-+..+ +-+.++.-.|++.|++|++..+...
T Consensus 4 Ly~~~~--~~~~~v~~~l~~~gl~~~~~~~~~~ 34 (81)
T cd03048 4 LYTHGT--PNGFKVSIMLEELGLPYEIHPVDIS 34 (81)
T ss_pred EEeCCC--CChHHHHHHHHHcCCCcEEEEecCc
Confidence 345444 8899999999999999998777643
No 334
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=47.15 E-value=1.7e+02 Score=26.35 Aligned_cols=103 Identities=15% Similarity=0.155 Sum_probs=59.5
Q ss_pred eecCChHHHhhcccccccccCCCcccccCCCCCCCCCCCeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCC--
Q 032094 21 VLASSNGSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQN-- 98 (147)
Q Consensus 21 Vta~~l~~~k~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRt-- 98 (147)
+....+.++...|+.+.+.|..---+.+.+-.+-|.-+.+||||++.++. ..+....++++=.-.+++.+..+.=.
T Consensus 92 i~~~G~G~l~~~~~~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a--a~~D~~~~~~~r~p~~~~~~~~~~vQG~ 169 (432)
T TIGR00237 92 MQPAGEGLLQLAYEQLKEKLAAEGLFDQEYKKPLPHFPKRVGVITSQTGA--ALADILHILKRRDPSLKVVIYPTLVQGE 169 (432)
T ss_pred eccCChHHHHHHHHHHHHHHHHCCCCCchhcCCCCCCCCEEEEEeCCccH--HHHHHHHHHHhhCCCceEEEecccccCc
Confidence 33455778888888877666432223333223334444589999998775 45677777765332245555554432
Q ss_pred --hHHHHHHHHHHhh-CCceEEEEecCCCC
Q 032094 99 --CKEALSYALSAKE-RGIKIIIVGDGVEA 125 (147)
Q Consensus 99 --p~~l~~~~~~~~~-~g~~ViIAvAG~aA 125 (147)
+..+.+-++.+.. .+++|||.+=|+-+
T Consensus 170 ~a~~~i~~al~~~~~~~~~dviii~RGGGs 199 (432)
T TIGR00237 170 GAVQSIVESIELANTKNECDVLIVGRGGGS 199 (432)
T ss_pred cHHHHHHHHHHHhhcCCCCCEEEEecCCCC
Confidence 3333333333433 34799998887743
No 335
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=47.09 E-value=1.3e+02 Score=23.23 Aligned_cols=65 Identities=11% Similarity=0.127 Sum_probs=38.2
Q ss_pred CCeEEEEecCCCCHHH----HHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHh-hCCceEEEEecCC
Q 032094 58 APIVGIIMESDLDLPV----MNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAK-ERGIKIIIVGDGV 123 (147)
Q Consensus 58 ~~~V~IimGS~SDl~~----~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~-~~g~~ViIAvAG~ 123 (147)
+++|+||+-|++-... ..-....|+++|++.....+ ..-.++.+.+.++++- .++.+++|.--|.
T Consensus 4 ~~rv~vit~~d~~~~~~d~n~~~l~~~L~~~G~~v~~~~i-v~Dd~~~i~~~l~~~~~~~~~DlVIttGGt 73 (163)
T TIGR02667 4 PLRIAILTVSDTRTEEDDTSGQYLVERLTEAGHRLADRAI-VKDDIYQIRAQVSAWIADPDVQVILITGGT 73 (163)
T ss_pred ccEEEEEEEeCcCCccCCCcHHHHHHHHHHCCCeEEEEEE-cCCCHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence 3688888766532221 22344568889986442222 3566666667665552 3568988887443
No 336
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=47.09 E-value=78 Score=28.54 Aligned_cols=52 Identities=12% Similarity=0.156 Sum_probs=41.0
Q ss_pred CeEEEEecCCC-CHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHh
Q 032094 59 PIVGIIMESDL-DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAK 110 (147)
Q Consensus 59 ~~V~IimGS~S-Dl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~ 110 (147)
.++.|+.|.+. +.-+++...+.++++||.++..-....-+.+++.++++...
T Consensus 105 ~LaiIlvG~dpaS~~Yv~~k~K~~e~~GI~~~~~~lpe~~te~ell~~I~~LN 157 (364)
T PLN02616 105 GLAVILVGDRKDSATYVRNKKKACDSVGINSFEVRLPEDSTEQEVLKFISGFN 157 (364)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHc
Confidence 57888888774 45566677889999999988777777878888988886653
No 337
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=47.05 E-value=80 Score=28.23 Aligned_cols=52 Identities=12% Similarity=0.130 Sum_probs=42.3
Q ss_pred CeEEEEecCCCCHH-HHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHh
Q 032094 59 PIVGIIMESDLDLP-VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAK 110 (147)
Q Consensus 59 ~~V~IimGS~SDl~-~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~ 110 (147)
.++.|+.|.+.|-. +++...+.++++||.+++.-.+..-+-+++.+.++...
T Consensus 88 ~LaiIlvGddpaS~~Yv~~k~K~a~~~GI~~~~~~l~~~~te~ell~~I~~lN 140 (345)
T PLN02897 88 GLAVVLVGQQRDSQTYVRNKIKACEETGIKSLLAELPEDCTEGQILSALRKFN 140 (345)
T ss_pred eEEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 57888899876654 55666788899999999999988888889999887653
No 338
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=47.05 E-value=72 Score=27.75 Aligned_cols=52 Identities=10% Similarity=0.114 Sum_probs=40.9
Q ss_pred CeEEEEecCCCCH-HHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHh
Q 032094 59 PIVGIIMESDLDL-PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAK 110 (147)
Q Consensus 59 ~~V~IimGS~SDl-~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~ 110 (147)
.++.|..|.+.|- -+++...+.++++||.+++.-.+..-+.+++.+.++...
T Consensus 33 ~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN 85 (293)
T PRK14185 33 HLAAILVGHDGGSETYVANKVKACEECGFKSSLIRYESDVTEEELLAKVRELN 85 (293)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4677777766544 455666889999999999999988888899998886653
No 339
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=46.77 E-value=94 Score=27.58 Aligned_cols=59 Identities=24% Similarity=0.237 Sum_probs=38.9
Q ss_pred CeEEEEecCCC---CH------HHHHHHHHHHHHhCCCeEEEEEcCC-CChHHHHHHHHHHhhCCceEEEE
Q 032094 59 PIVGIIMESDL---DL------PVMNDAARTLSDFGVPYEIKILPPH-QNCKEALSYALSAKERGIKIIIV 119 (147)
Q Consensus 59 ~~V~IimGS~S---Dl------~~~~~a~~~L~~fGI~~ev~V~SAH-Rtp~~l~~~~~~~~~~g~~ViIA 119 (147)
++|+++.||.. .. ...+++.+.|++.|+ ++.....= .++++..+.++..+..+++.+|.
T Consensus 1 ~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~vv~~~~~~~~~~~~~~~~~~~~~~~~d~ii~ 69 (452)
T cd00578 1 PKIGFVTGSQHLYGEELLEQVEEYAREVADLLNELPV--EVVDKPEVTGTPDEARKAAEEFNEANCDGLIV 69 (452)
T ss_pred CEEEEEEecccccChhHHHHHHHHHHHHHHHHhcCCc--eEEecCcccCCHHHHHHHHHHHhhcCCcEEEE
Confidence 37899999987 32 233445555555544 54444433 48888988888777777877776
No 340
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=46.57 E-value=84 Score=23.16 Aligned_cols=58 Identities=24% Similarity=0.225 Sum_probs=43.8
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHh-h-CCceEEEEe
Q 032094 61 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAK-E-RGIKIIIVG 120 (147)
Q Consensus 61 V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~-~-~g~~ViIAv 120 (147)
|.|+ |.|=-+.+..+..+|..+|+++.+--+--|-.+.++.+++.... . .-..|||.+
T Consensus 16 VVif--SKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~G 75 (104)
T KOG1752|consen 16 VVIF--SKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGG 75 (104)
T ss_pred EEEE--ECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECC
Confidence 5555 55778999999999999999988888888888888888886432 1 223666653
No 341
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=46.45 E-value=53 Score=23.75 Aligned_cols=58 Identities=17% Similarity=0.116 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCchhhhhhcc
Q 032094 74 MNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGTCSCC 134 (147)
Q Consensus 74 ~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLpGvvAg~ 134 (147)
.++....|+..+..+++..... .+...++......+...-.|.+.|+.+.|--++.++
T Consensus 17 ~~~v~~~l~~~~~~~~~~~t~~---~~~~~~~~~~~~~~~~~~~ivv~GGDGTl~~vv~~l 74 (130)
T PF00781_consen 17 WKKVEPALRAAGIDYEVIETES---AGHAEALARILALDDYPDVIVVVGGDGTLNEVVNGL 74 (130)
T ss_dssp HHHHHHHHHHTTCEEEEEEESS---TTHHHHHHHHHHHTTS-SEEEEEESHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCceEEEEEec---cchHHHHHHHHhhccCccEEEEEcCccHHHHHHHHH
Confidence 3788899999999988888765 333333433222333334555668888777777654
No 342
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=46.41 E-value=1.3e+02 Score=22.91 Aligned_cols=67 Identities=15% Similarity=0.167 Sum_probs=48.6
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhCCCeE---------------EEEEcCCCChHHHHHHHHHHhhCCceEEEEecC-C
Q 032094 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYE---------------IKILPPHQNCKEALSYALSAKERGIKIIIVGDG-V 123 (147)
Q Consensus 60 ~V~IimGS~SDl~~~~~a~~~L~~fGI~~e---------------v~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG-~ 123 (147)
+| .+.|.-+-...++....-|..+|+++. +-++|..+...++.+.++.+..+|+++| ++.+ .
T Consensus 35 ~I-~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~D~vI~iS~sG~t~~~i~~~~~ak~~g~~iI-~IT~~~ 112 (179)
T cd05005 35 RI-FVYGAGRSGLVAKAFAMRLMHLGLNVYVVGETTTPAIGPGDLLIAISGSGETSSVVNAAEKAKKAGAKVV-LITSNP 112 (179)
T ss_pred eE-EEEecChhHHHHHHHHHHHHhCCCeEEEeCCCCCCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHCCCeEE-EEECCC
Confidence 44 445555557888988888888898643 5677888888999999999999998864 4444 3
Q ss_pred CCchh
Q 032094 124 EAHLS 128 (147)
Q Consensus 124 aAhLp 128 (147)
.+.|.
T Consensus 113 ~s~la 117 (179)
T cd05005 113 DSPLA 117 (179)
T ss_pred CCchH
Confidence 44443
No 343
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=46.32 E-value=1.1e+02 Score=26.90 Aligned_cols=60 Identities=10% Similarity=0.108 Sum_probs=45.5
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCC---------hHHHHHHHHHHhhCCceEEEEecC
Q 032094 61 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQN---------CKEALSYALSAKERGIKIIIVGDG 122 (147)
Q Consensus 61 V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRt---------p~~l~~~~~~~~~~g~~ViIAvAG 122 (147)
..+|-|=..+.+.+++.++.|+.++ +.+.++-.|.. ++++.++.+...+.|+.|.|---.
T Consensus 263 yvLI~GvNDs~e~a~~La~llk~l~--~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~~~gi~v~iR~~~ 331 (355)
T TIGR00048 263 YVLLDGVNDQVEHAEELAELLKGTK--CKVNLIPWNPFPEADYERPSNEQIDRFAKTLMSYGFTVTIRKSR 331 (355)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCC--CceEEEecccCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCC
Confidence 5566676667899999999999775 46777777753 377778888888899999885433
No 344
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=46.32 E-value=1.5e+02 Score=26.95 Aligned_cols=64 Identities=14% Similarity=0.182 Sum_probs=41.2
Q ss_pred cccceecCceeeecCChH---HHhhcccccccccCCCcccccCCCCCCCCCCCeEEEEecCCCCHHHHHHHHHHHHHhCC
Q 032094 10 SVRTVSRGTIPVLASSNG---SATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLDLPVMNDAARTLSDFGV 86 (147)
Q Consensus 10 ~~~qvyrghitVta~~l~---~~k~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~SDl~~~~~a~~~L~~fGI 86 (147)
.++-.-||-|-.|+.=.. .|++.++++-.+ ++....+++++|+|+.+.+-.+-.++..| ..|.
T Consensus 2 ii~p~~rg~i~~~~hp~gc~~~v~~qi~~~~~~-------------~~~~~ggK~aLVTGaSsGIGlA~~IA~al-~~GA 67 (398)
T PRK13656 2 IIKPKIRGFICTTAHPVGCEANVKEQIEYVKAQ-------------GPIANGPKKVLVIGASSGYGLASRIAAAF-GAGA 67 (398)
T ss_pred eecccccceeECCCCCHHHHHHHHHHHHHHHhc-------------CCcCCCCCEEEEECCCchHhHHHHHHHHH-HcCC
Confidence 344455787777655432 444444444321 12224468999999999999988888888 7776
Q ss_pred C
Q 032094 87 P 87 (147)
Q Consensus 87 ~ 87 (147)
.
T Consensus 68 ~ 68 (398)
T PRK13656 68 D 68 (398)
T ss_pred e
Confidence 4
No 345
>PRK06139 short chain dehydrogenase; Provisional
Probab=46.30 E-value=1.2e+02 Score=25.71 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=15.4
Q ss_pred ChHHHHHHHHHHhh--CCceEEEEecCCC
Q 032094 98 NCKEALSYALSAKE--RGIKIIIVGDGVE 124 (147)
Q Consensus 98 tp~~l~~~~~~~~~--~g~~ViIAvAG~a 124 (147)
.++.+.++++...+ .+++++|-.||..
T Consensus 67 d~~~v~~~~~~~~~~~g~iD~lVnnAG~~ 95 (330)
T PRK06139 67 DADQVKALATQAASFGGRIDVWVNNVGVG 95 (330)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence 34555555543322 3578888888853
No 346
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=46.17 E-value=1.4e+02 Score=25.83 Aligned_cols=56 Identities=14% Similarity=0.145 Sum_probs=42.9
Q ss_pred EEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCC--------hHHHHHHHHHHhhCCceEEEE
Q 032094 62 GIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQN--------CKEALSYALSAKERGIKIIIV 119 (147)
Q Consensus 62 ~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRt--------p~~l~~~~~~~~~~g~~ViIA 119 (147)
.+|-|-..+.+.+++.++.++.+++ .+.++..|.. .+++.+|.+..+..|+.|.|-
T Consensus 257 vlI~g~NDs~ed~~~La~llk~~~~--~VnLIpynp~~~~~~~ps~e~l~~f~~~l~~~gi~vtvr 320 (343)
T PRK14469 257 ILIKGFNDEIEDAKKLAELLKGLKV--FVNLIPVNPTVPGLEKPSRERIERFKEILLKNGIEAEIR 320 (343)
T ss_pred EEECCCCCCHHHHHHHHHHHhccCc--EEEEEecCCCCccCCCCCHHHHHHHHHHHHHCCCeEEEe
Confidence 3555555558899999999988764 6788888863 467778888888889999885
No 347
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=46.07 E-value=60 Score=23.53 Aligned_cols=44 Identities=14% Similarity=0.294 Sum_probs=30.1
Q ss_pred HHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEE
Q 032094 75 NDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIV 119 (147)
Q Consensus 75 ~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIA 119 (147)
++..+.+++.+|+ ++-|+-.....+++.++++..++.|++|.++
T Consensus 131 ~~l~~~~~~~~id-~v~ial~~~~~~~i~~ii~~~~~~~v~v~~v 174 (175)
T PF13727_consen 131 DDLPELVREHDID-EVIIALPWSEEEQIKRIIEELENHGVRVRVV 174 (175)
T ss_dssp GGHHHHHHHHT---EEEE--TTS-HHHHHHHHHHHHTTT-EEEE-
T ss_pred HHHHHHHHhCCCC-EEEEEcCccCHHHHHHHHHHHHhCCCEEEEe
Confidence 4455677888888 7778877778889999999999999888763
No 348
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=46.05 E-value=74 Score=26.86 Aligned_cols=54 Identities=13% Similarity=0.175 Sum_probs=41.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCeEEEEEc-------------CCCChHHHHHHHHHHhhCCceEEEEec
Q 032094 67 SDLDLPVMNDAARTLSDFGVPYEIKILP-------------PHQNCKEALSYALSAKERGIKIIIVGD 121 (147)
Q Consensus 67 S~SDl~~~~~a~~~L~~fGI~~ev~V~S-------------AHRtp~~l~~~~~~~~~~g~~ViIAvA 121 (147)
..-+...+.+.++.++++|||+++-++- ..|-|+ ..+++++..++|+++++-+.
T Consensus 25 ~~~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~g~f~~d~~~FPd-p~~mi~~l~~~G~k~~l~i~ 91 (303)
T cd06592 25 ADINQETVLNYAQEIIDNGFPNGQIEIDDNWETCYGDFDFDPTKFPD-PKGMIDQLHDLGFRVTLWVH 91 (303)
T ss_pred cCcCHHHHHHHHHHHHHcCCCCCeEEeCCCccccCCccccChhhCCC-HHHHHHHHHHCCCeEEEEEC
Confidence 3456677888888999999998876663 245565 77888888899999988654
No 349
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=45.64 E-value=1.3e+02 Score=23.74 Aligned_cols=26 Identities=19% Similarity=0.143 Sum_probs=17.8
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCC
Q 032094 59 PIVGIIMESDLDLPVMNDAARTLSDFGV 86 (147)
Q Consensus 59 ~~V~IimGS~SDl~~~~~a~~~L~~fGI 86 (147)
+++.+|+|+.+. +...+++.|-+-|.
T Consensus 10 ~k~vlVtGas~g--iG~~ia~~l~~~G~ 35 (278)
T PRK08277 10 GKVAVITGGGGV--LGGAMAKELARAGA 35 (278)
T ss_pred CCEEEEeCCCch--HHHHHHHHHHHCCC
Confidence 467888888774 45666666666665
No 350
>PRK05872 short chain dehydrogenase; Provisional
Probab=45.59 E-value=1.6e+02 Score=23.92 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=17.5
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCC
Q 032094 59 PIVGIIMESDLDLPVMNDAARTLSDFGV 86 (147)
Q Consensus 59 ~~V~IimGS~SDl~~~~~a~~~L~~fGI 86 (147)
+++++|+|+.+.+ ...+++.|.+-|.
T Consensus 9 gk~vlItGas~gI--G~~ia~~l~~~G~ 34 (296)
T PRK05872 9 GKVVVVTGAARGI--GAELARRLHARGA 34 (296)
T ss_pred CCEEEEECCCchH--HHHHHHHHHHCCC
Confidence 4688889988854 4556666666664
No 351
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=45.54 E-value=1.4e+02 Score=23.05 Aligned_cols=60 Identities=15% Similarity=0.164 Sum_probs=32.6
Q ss_pred EEEEecCCCCH---HHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecC
Q 032094 61 VGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 122 (147)
Q Consensus 61 V~IimGS~SDl---~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG 122 (147)
|++|.-+.+|- .+.+.+.+.++++|+ ++.+...-..+++..+.++..-..+++.||..+.
T Consensus 2 i~vi~~~~~~~~~~~~~~~i~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~ 64 (277)
T cd06319 2 IAYIVSDLRIPFWQIMGRGVKSKAKALGY--DAVELSAENSAKKELENLRTAIDKGVSGIIISPT 64 (277)
T ss_pred eEEEeCCCCchHHHHHHHHHHHHHHhcCC--eEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 45555444331 223344455666764 4445555566666666666555566777765443
No 352
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=45.49 E-value=30 Score=22.40 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhCCCeEEEEE
Q 032094 72 PVMNDAARTLSDFGVPYEIKIL 93 (147)
Q Consensus 72 ~~~~~a~~~L~~fGI~~ev~V~ 93 (147)
|.+.++...|++.||+|++.-.
T Consensus 11 p~c~kv~~~L~~~gi~y~~~~~ 32 (77)
T cd03040 11 PFCCKVRAFLDYHGIPYEVVEV 32 (77)
T ss_pred HHHHHHHHHHHHCCCceEEEEC
Confidence 8999999999999999997644
No 353
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=45.41 E-value=53 Score=19.36 Aligned_cols=31 Identities=23% Similarity=0.300 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEcCCCChHH
Q 032094 71 LPVMNDAARTLSDFGVPYEIKILPPHQNCKE 101 (147)
Q Consensus 71 l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~ 101 (147)
-+.+.++...|+..||+|+...+........
T Consensus 9 ~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~ 39 (71)
T cd00570 9 SPRSLRVRLALEEKGLPYELVPVDLGEGEQE 39 (71)
T ss_pred CccHHHHHHHHHHcCCCcEEEEeCCCCCCCH
Confidence 3688999999999999999887775554443
No 354
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=45.37 E-value=1.3e+02 Score=22.73 Aligned_cols=69 Identities=16% Similarity=0.106 Sum_probs=48.7
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhCCCeE---------------EEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCC
Q 032094 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYE---------------IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE 124 (147)
Q Consensus 60 ~V~IimGS~SDl~~~~~a~~~L~~fGI~~e---------------v~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~a 124 (147)
+|-|+ |.-.-...++....-|..+|+++. +-++|-.+...++.+.++.++.+|++|+.-..-..
T Consensus 32 ~I~i~-G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~Dv~I~iS~sG~t~~~i~~~~~ak~~g~~ii~IT~~~~ 110 (179)
T TIGR03127 32 RIFVA-GAGRSGLVGKAFAMRLMHLGFNVYVVGETTTPSIKKGDLLIAISGSGETESLVTVAKKAKEIGATVAAITTNPE 110 (179)
T ss_pred EEEEE-ecCHHHHHHHHHHHHHHhCCCeEEEeCCcccCCCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 45444 433446788888888888887642 56777888889999999999999988755444445
Q ss_pred Cchhh
Q 032094 125 AHLSG 129 (147)
Q Consensus 125 AhLpG 129 (147)
+-|..
T Consensus 111 s~la~ 115 (179)
T TIGR03127 111 STLGK 115 (179)
T ss_pred CchHH
Confidence 55543
No 355
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=45.27 E-value=1.1e+02 Score=21.87 Aligned_cols=61 Identities=16% Similarity=0.173 Sum_probs=43.0
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhC-CCeE--------------------EEEEc-CCCChHHHHHHHHHHhhCCceEE
Q 032094 60 IVGIIMESDLDLPVMNDAARTLSDFG-VPYE--------------------IKILP-PHQNCKEALSYALSAKERGIKII 117 (147)
Q Consensus 60 ~V~IimGS~SDl~~~~~a~~~L~~fG-I~~e--------------------v~V~S-AHRtp~~l~~~~~~~~~~g~~Vi 117 (147)
.-..+.|+-+.+.++.+.+..|.+.+ ++.+ +-++| -=++-+++.+.++..++.|.+++
T Consensus 14 ~~i~~~G~G~s~~~a~e~~~kl~e~~~i~~~~~~~~e~~hg~~~~~~~~~~vi~is~~g~t~~~~~~~~~~~~~~~~~vi 93 (153)
T cd05009 14 KSFYVLGRGPNYGTALEGALKLKETSYIHAEAYSAGEFKHGPIALVDEGTPVIFLAPEDRLEEKLESLIKEVKARGAKVI 93 (153)
T ss_pred CcEEEEcCCCCHHHHHHHHHHHHHHHhhcceeccHHHhccChhhhccCCCcEEEEecCChhHHHHHHHHHHHHHcCCEEE
Confidence 45678899999999999888888776 6532 33343 33555668888888888777666
Q ss_pred EEe
Q 032094 118 IVG 120 (147)
Q Consensus 118 IAv 120 (147)
.-.
T Consensus 94 ~it 96 (153)
T cd05009 94 VIT 96 (153)
T ss_pred EEe
Confidence 443
No 356
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=45.26 E-value=1.4e+02 Score=22.78 Aligned_cols=51 Identities=16% Similarity=0.122 Sum_probs=33.2
Q ss_pred HHHHHHHHHHH----hCCCeEEEEEcCCCChHHHHHHHHHHhhC-CceEEEEecCC
Q 032094 73 VMNDAARTLSD----FGVPYEIKILPPHQNCKEALSYALSAKER-GIKIIIVGDGV 123 (147)
Q Consensus 73 ~~~~a~~~L~~----fGI~~ev~V~SAHRtp~~l~~~~~~~~~~-g~~ViIAvAG~ 123 (147)
.++-+.+.+.+ .|.++++.+....-.|++..+.++..-.+ ++.+||...+.
T Consensus 22 ~~~~a~~~~n~~~g~~g~~~~~~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~~ 77 (299)
T cd04509 22 GAQLAVEEINAKGGIPGRKLELVIYDDQSDPARALAAARRLCQQEGVDALVGPVSS 77 (299)
T ss_pred HHHHHHHHHHhcCCCCCcEEEEEEecCCCCHHHHHHHHHHHhcccCceEEEcCCCc
Confidence 34444444443 35667787877777788888877666555 78888765443
No 357
>PRK01060 endonuclease IV; Provisional
Probab=45.12 E-value=1.3e+02 Score=24.30 Aligned_cols=54 Identities=13% Similarity=0.223 Sum_probs=41.8
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhCCC-eEEEEEcCC------CChHHHHHHHHHHhhCCceE
Q 032094 60 IVGIIMESDLDLPVMNDAARTLSDFGVP-YEIKILPPH------QNCKEALSYALSAKERGIKI 116 (147)
Q Consensus 60 ~V~IimGS~SDl~~~~~a~~~L~~fGI~-~ev~V~SAH------Rtp~~l~~~~~~~~~~g~~V 116 (147)
+||..+.=..| ++++.+.++++|.+ +|+.+.+.| -+++++.++.+..+..|+++
T Consensus 3 ~~g~~~~~~~~---~~~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 3 LIGAHVSAAGG---LEGAVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAACEKYGISP 63 (281)
T ss_pred eEEEeeecCCC---HHHHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCCC
Confidence 57777777778 67888999999998 678776554 35667888888788888874
No 358
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=44.81 E-value=63 Score=26.44 Aligned_cols=73 Identities=11% Similarity=0.107 Sum_probs=46.4
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhCCCe--EEEEEcC-----CCChHHHHHHHHHHhhCCceEEEEecCCCCchhhhhh
Q 032094 60 IVGIIMESDLDLPVMNDAARTLSDFGVPY--EIKILPP-----HQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGTCS 132 (147)
Q Consensus 60 ~V~IimGS~SDl~~~~~a~~~L~~fGI~~--ev~V~SA-----HRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLpGvvA 132 (147)
...|++|..-|..........+ +.+.+ ++.+.+. .++.....++.+......++++++-......+++.++
T Consensus 30 ~~~~~tg~h~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDvV~~~g~~~~~~~~~~a 107 (363)
T cd03786 30 LVLVVTGQHYDMEMGVTFFEIL--FIIKPDYDLLLGSDSQSLGAQTAGLLIGLEAVLLEEKPDLVLVLGDTNETLAAALA 107 (363)
T ss_pred EEEEEeCCCCChhhhHHHHHhh--CCCCCCEEEecCCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHH
Confidence 5678889988888777777666 55544 4444443 2233334444444445568999988556677887777
Q ss_pred cc
Q 032094 133 CC 134 (147)
Q Consensus 133 g~ 134 (147)
+.
T Consensus 108 a~ 109 (363)
T cd03786 108 AF 109 (363)
T ss_pred HH
Confidence 64
No 359
>PRK07478 short chain dehydrogenase; Provisional
Probab=44.76 E-value=1.4e+02 Score=23.24 Aligned_cols=13 Identities=23% Similarity=0.419 Sum_probs=9.8
Q ss_pred CceEEEEecCCCC
Q 032094 113 GIKIIIVGDGVEA 125 (147)
Q Consensus 113 g~~ViIAvAG~aA 125 (147)
.++++|-.||...
T Consensus 83 ~id~li~~ag~~~ 95 (254)
T PRK07478 83 GLDIAFNNAGTLG 95 (254)
T ss_pred CCCEEEECCCCCC
Confidence 5788888888643
No 360
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=44.74 E-value=43 Score=28.96 Aligned_cols=44 Identities=30% Similarity=0.395 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhCCCeE-----EEEEcCCCChHHHHHHHHHHhhCCceEEEE
Q 032094 73 VMNDAARTLSDFGVPYE-----IKILPPHQNCKEALSYALSAKERGIKIIIV 119 (147)
Q Consensus 73 ~~~~a~~~L~~fGI~~e-----v~V~SAHRtp~~l~~~~~~~~~~g~~ViIA 119 (147)
+-++|.++|++|||+|+ +-|. -.++-...++..+-+-|+++|-.
T Consensus 81 v~~~a~~iL~e~gI~ye~~e~g~~v~---ds~e~~skl~~~a~~aGaki~n~ 129 (262)
T COG1635 81 VREEADEILDEFGIRYEEEEDGYYVA---DSAEFASKLAARALDAGAKIFNG 129 (262)
T ss_pred ecchHHHHHHHhCCcceecCCceEEe---cHHHHHHHHHHHHHhcCceeeec
Confidence 45789999999999988 3333 23455555665555667777754
No 361
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=44.56 E-value=1.2e+02 Score=23.44 Aligned_cols=58 Identities=17% Similarity=0.138 Sum_probs=44.2
Q ss_pred CeEEEEecCCCCHHHHH----HHHHHHHHhCC---CeE-EEEEcCCCChHHHHHHHHHHhhCCceEEEEe
Q 032094 59 PIVGIIMESDLDLPVMN----DAARTLSDFGV---PYE-IKILPPHQNCKEALSYALSAKERGIKIIIVG 120 (147)
Q Consensus 59 ~~V~IimGS~SDl~~~~----~a~~~L~~fGI---~~e-v~V~SAHRtp~~l~~~~~~~~~~g~~ViIAv 120 (147)
.+|+|+.+.-.. .+++ .|.+.|++.|+ .++ ++|-++.=.|-...++++ ..+++.+|+.
T Consensus 4 ~ri~IV~s~~n~-~i~~~ll~~a~~~l~~~g~~~~~i~~~~VPGa~ElP~a~~~l~~---~~~~Davi~l 69 (144)
T PF00885_consen 4 LRIAIVVSRFNE-EITDRLLEGALEELKRHGVAEENIEVIRVPGAFELPLAAKRLAE---SGRYDAVIAL 69 (144)
T ss_dssp EEEEEEEESTTH-HHHHHHHHHHHHHHHHTTTTGGCEEEEEESSGGGHHHHHHHHHH---CSTESEEEEE
T ss_pred CEEEEEEEeccH-HHHHHHHHHHHHHHHHcCCCccceEEEEcCCHHHHHHHHHHHhc---ccCccEEEEe
Confidence 578888877544 3444 48999999999 444 788899999999998885 3457888875
No 362
>PRK08265 short chain dehydrogenase; Provisional
Probab=44.49 E-value=1.3e+02 Score=23.75 Aligned_cols=40 Identities=15% Similarity=0.131 Sum_probs=24.2
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHH
Q 032094 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALS 104 (147)
Q Consensus 59 ~~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~ 104 (147)
.++++|+|+++. +...+++.|-+.|. +| +-..|.++++.+
T Consensus 6 ~k~vlItGas~g--IG~~ia~~l~~~G~--~V--~~~~r~~~~~~~ 45 (261)
T PRK08265 6 GKVAIVTGGATL--IGAAVARALVAAGA--RV--AIVDIDADNGAA 45 (261)
T ss_pred CCEEEEECCCCh--HHHHHHHHHHHCCC--EE--EEEeCCHHHHHH
Confidence 468888998874 56667777766664 22 323455544433
No 363
>PRK10638 glutaredoxin 3; Provisional
Probab=44.44 E-value=94 Score=20.71 Aligned_cols=39 Identities=13% Similarity=0.135 Sum_probs=27.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHH
Q 032094 68 DLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALS 108 (147)
Q Consensus 68 ~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~ 108 (147)
.+.=|.|.++...|++.||+|++.=+. ..++...++.+.
T Consensus 9 ~~~Cp~C~~a~~~L~~~gi~y~~~dv~--~~~~~~~~l~~~ 47 (83)
T PRK10638 9 KATCPFCHRAKALLNSKGVSFQEIPID--GDAAKREEMIKR 47 (83)
T ss_pred CCCChhHHHHHHHHHHcCCCcEEEECC--CCHHHHHHHHHH
Confidence 445589999999999999999875444 344444555543
No 364
>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM). This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.
Probab=44.17 E-value=80 Score=25.63 Aligned_cols=51 Identities=10% Similarity=0.138 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCC
Q 032094 69 LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE 124 (147)
Q Consensus 69 SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~a 124 (147)
.|-+.+.+..+.|.++|.++++.+- .+ ....+.++++.. +.+|+|+=.|+-
T Consensus 107 ~~~~~~~~~~~~~~~~gl~v~~~~~-~~-~l~~l~~l~~~~---~l~ivldH~G~p 157 (263)
T cd01311 107 DNKDELDEIAKRAAELGWHVQVYFD-AV-DLPALLPFLQKL---PVAVVIDHFGRP 157 (263)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEeC-Hh-hHHHHHHHHHHC---CCCEEEECCCCC
Confidence 3888899999999999999999874 33 334566666544 589999998863
No 365
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=44.01 E-value=74 Score=27.04 Aligned_cols=52 Identities=13% Similarity=0.148 Sum_probs=39.8
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEE
Q 032094 66 ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKII 117 (147)
Q Consensus 66 GS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~Vi 117 (147)
++...+..+.++.+.|.+.|+++.++++--.-+.+++.++++...+.|++.+
T Consensus 138 ~g~~~f~~v~~~i~~l~~~~~~~~i~~~v~~~n~~~l~~i~~~~~~~g~~~~ 189 (370)
T PRK13758 138 CGLDTFSKVERAAELFKKYKVEFNILCVVTSNTARHVNKIYKYFKEKDFKFL 189 (370)
T ss_pred CCCccHHHHHHHHHHHHHhCCCceEEEEeccccccCHHHHHHHHHHcCCCeE
Confidence 4556788888999999999999888776555566778888877777887644
No 366
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor. Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.
Probab=43.97 E-value=97 Score=26.44 Aligned_cols=63 Identities=8% Similarity=0.099 Sum_probs=41.5
Q ss_pred CeEEEEecCCCC-----HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCC
Q 032094 59 PIVGIIMESDLD-----LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE 124 (147)
Q Consensus 59 ~~V~IimGS~SD-----l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~a 124 (147)
.+|+||. .++| +..++...+.|++.|+........ ......+.++++..+..+ +|||..+...
T Consensus 138 ~~vaiiy-~~~~~~~~~~~~~~~l~~~~~~~gi~v~~~~~~-~~~~~d~~~~l~~ik~~~-rvii~~~~~~ 205 (387)
T cd06386 138 RSALLVY-EDDKQERNCYFTLEGVHHVFQEEGYHMSIYPFD-ETKDLDLDEIIRAIQASE-RVVIMCAGAD 205 (387)
T ss_pred eEEEEEE-EcCCCCccceehHHHHHHHHHhcCceEEEEecC-CCCcccHHHHHHHHHhcC-cEEEEecCHH
Confidence 4688886 3444 223677778888999877654332 333456777777777777 9999886553
No 367
>PRK07063 short chain dehydrogenase; Provisional
Probab=43.95 E-value=1.5e+02 Score=23.06 Aligned_cols=42 Identities=14% Similarity=0.094 Sum_probs=24.5
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHH
Q 032094 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYA 106 (147)
Q Consensus 59 ~~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~ 106 (147)
+++++|+|+.+ .+...+++.|-+-|. + |+-..|.++++.+..
T Consensus 7 ~k~vlVtGas~--gIG~~~a~~l~~~G~--~--vv~~~r~~~~~~~~~ 48 (260)
T PRK07063 7 GKVALVTGAAQ--GIGAAIARAFAREGA--A--VALADLDAALAERAA 48 (260)
T ss_pred CCEEEEECCCc--hHHHHHHHHHHHCCC--E--EEEEeCCHHHHHHHH
Confidence 46788888876 445666666666664 2 333445555544443
No 368
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=43.86 E-value=1.5e+02 Score=26.07 Aligned_cols=62 Identities=11% Similarity=0.134 Sum_probs=48.7
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCC---------ChHHHHHHHHHHhhCCceEEEEecCC
Q 032094 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQ---------NCKEALSYALSAKERGIKIIIVGDGV 123 (147)
Q Consensus 60 ~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHR---------tp~~l~~~~~~~~~~g~~ViIAvAG~ 123 (147)
...+|=|=..+.+.+++.++.|+.++ +.|.++..|. +.+++.+|.+...+.|+.|.|--..+
T Consensus 259 ey~LIpGvNDs~e~a~~La~~l~~l~--~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~~~Gi~vtvR~~~G 329 (345)
T PRK14457 259 EYILLGGVNDLPEHAEELANLLRGFQ--SHVNLIPYNPIDEVEFQRPSPKRIQAFQRVLEQRGVAVSVRASRG 329 (345)
T ss_pred EEEEECCcCCCHHHHHHHHHHHhcCC--CeEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCC
Confidence 46777888888899999999999875 4788888886 35677778887888899998754443
No 369
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=43.72 E-value=1.4e+02 Score=24.82 Aligned_cols=58 Identities=24% Similarity=0.166 Sum_probs=46.1
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeE--------------------EEEEcCCCChHHHHHHHHHHhhCCceEE
Q 032094 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYE--------------------IKILPPHQNCKEALSYALSAKERGIKII 117 (147)
Q Consensus 59 ~~V~IimGS~SDl~~~~~a~~~L~~fGI~~e--------------------v~V~SAHRtp~~l~~~~~~~~~~g~~Vi 117 (147)
.+|.++-++.| ..+++....-|..+|+++. +-++|.-+...++.+.++.++.+|++||
T Consensus 131 ~rI~~~G~g~S-~~vA~~~~~~l~~ig~~~~~~~d~~~~~~~~~~~~~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~vI 208 (281)
T COG1737 131 RRIYFFGLGSS-GLVASDLAYKLMRIGLNVVALSDTHGQLMQLALLTPGDVVIAISFSGYTREIVEAAELAKERGAKVI 208 (281)
T ss_pred CeEEEEEechh-HHHHHHHHHHHHHcCCceeEecchHHHHHHHHhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEE
Confidence 35666665544 5788888889999998733 6788899999999999999999997765
No 370
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=43.50 E-value=1e+02 Score=24.81 Aligned_cols=71 Identities=11% Similarity=0.097 Sum_probs=40.5
Q ss_pred CeEEEEecCCC-CHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCchhhhh
Q 032094 59 PIVGIIMESDL-DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGTC 131 (147)
Q Consensus 59 ~~V~IimGS~S-Dl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLpGvv 131 (147)
.+|+||...++ -....+...+.|++.|+.. +.....--....+..++......+.++++..+ ..+.++.++
T Consensus 136 ~~v~iv~~~~~~g~~~~~~~~~~~~~~G~~v-v~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~-~~~~~~~~~ 207 (343)
T PF13458_consen 136 KKVAIVYPDDPYGRSLAEAFRKALEAAGGKV-VGEIRYPPGDTDFSALVQQLKSAGPDVVVLAG-DPADAAAFL 207 (343)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHHHTTCEE-EEEEEE-TTSSHHHHHHHHHHHTTTSEEEEES-THHHHHHHH
T ss_pred cEEEEEecCchhhhHHHHHHHHHHhhcCcee-ccceecccccccchHHHHHHhhcCCCEEEEec-cchhHHHHH
Confidence 37888875532 2345566677888999883 22222223335666666666667788855554 333334333
No 371
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=43.47 E-value=1.5e+02 Score=22.86 Aligned_cols=26 Identities=12% Similarity=0.134 Sum_probs=16.1
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCC
Q 032094 59 PIVGIIMESDLDLPVMNDAARTLSDFGV 86 (147)
Q Consensus 59 ~~V~IimGS~SDl~~~~~a~~~L~~fGI 86 (147)
+++.+|+|+++ .+...+++.|-+.|.
T Consensus 7 ~~~vlItGasg--~iG~~la~~l~~~G~ 32 (262)
T PRK13394 7 GKTAVVTGAAS--GIGKEIALELARAGA 32 (262)
T ss_pred CCEEEEECCCC--hHHHHHHHHHHHCCC
Confidence 46777888877 444555555555554
No 372
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=43.43 E-value=2e+02 Score=25.07 Aligned_cols=53 Identities=13% Similarity=-0.043 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEcCCCC-hHHHHHHHHHHhhCCceEEEEecCCC
Q 032094 71 LPVMNDAARTLSDFGVPYEIKILPPHQN-CKEALSYALSAKERGIKIIIVGDGVE 124 (147)
Q Consensus 71 l~~~~~a~~~L~~fGI~~ev~V~SAHRt-p~~l~~~~~~~~~~g~~ViIAvAG~a 124 (147)
++.+.++.+..++.|..+.+..--+.|+ |+.+.++++.+.+-|++.| ..+-..
T Consensus 112 l~~~~~~i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i-~l~DT~ 165 (365)
T TIGR02660 112 LERLARLVSFARDRGLFVSVGGEDASRADPDFLVELAEVAAEAGADRF-RFADTV 165 (365)
T ss_pred HHHHHHHHHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHHHcCcCEE-EEcccC
Confidence 4666688888889998877777777777 7888889988888888764 444433
No 373
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=43.37 E-value=1.5e+02 Score=22.78 Aligned_cols=48 Identities=13% Similarity=0.070 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCC
Q 032094 74 MNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV 123 (147)
Q Consensus 74 ~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~ 123 (147)
.+.+.+.++++|+ ++.+......+++..++++....++++.||..+.-
T Consensus 19 ~~g~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~ 66 (275)
T cd06317 19 NKAFQAAAEEDGV--EVIVLDANGDVARQAAQVEDLIAQKVDGIILWPTD 66 (275)
T ss_pred HHHHHHHHHhcCC--EEEEEcCCcCHHHHHHHHHHHHHcCCCEEEEecCC
Confidence 3455556677775 44555556677777777776666678877766543
No 374
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=43.27 E-value=97 Score=26.57 Aligned_cols=53 Identities=15% Similarity=0.120 Sum_probs=38.6
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEE
Q 032094 65 MESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKII 117 (147)
Q Consensus 65 mGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~Vi 117 (147)
.|..-.+..+.++.+.|++.|+++.+.++---.+.+++.++++.+.+.|++.+
T Consensus 134 rg~~g~f~~~~~~i~~l~~~g~~v~i~~vv~~~N~~~i~~~~~~~~~lgv~~i 186 (378)
T PRK05301 134 AGTKGAFAKKLAVARLVKAHGYPLTLNAVIHRHNIDQIPRIIELAVELGADRL 186 (378)
T ss_pred cCCCchHHHHHHHHHHHHHCCCceEEEEEeecCCHHHHHHHHHHHHHcCCCEE
Confidence 45444566777788889999998887765444567788888888877787654
No 375
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=43.24 E-value=1.8e+02 Score=23.62 Aligned_cols=69 Identities=14% Similarity=0.035 Sum_probs=50.5
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhCCCeE--------------------EEEEcCCCChHHHHHHHHHHhhCCceEEEE
Q 032094 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYE--------------------IKILPPHQNCKEALSYALSAKERGIKIIIV 119 (147)
Q Consensus 60 ~V~IimGS~SDl~~~~~a~~~L~~fGI~~e--------------------v~V~SAHRtp~~l~~~~~~~~~~g~~ViIA 119 (147)
+|-|+ |..+=...++....-|..+|+++. +-++|.-+..+++.+.++.++.+|++||.-
T Consensus 130 ~I~i~-G~G~s~~~A~~~~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~Dv~I~iS~sg~~~~~~~~~~~ak~~ga~iI~I 208 (278)
T PRK11557 130 RIILT-GIGASGLVAQNFAWKLMKIGINAVAERDMHALLATVQALSPDDLLLAISYSGERRELNLAADEALRVGAKVLAI 208 (278)
T ss_pred eEEEE-ecChhHHHHHHHHHHHhhCCCeEEEcCChHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHHcCCCEEEE
Confidence 44444 444457888888888888887632 457777788888999999999999887766
Q ss_pred ecCCCCchhh
Q 032094 120 GDGVEAHLSG 129 (147)
Q Consensus 120 vAG~aAhLpG 129 (147)
-....+-|+.
T Consensus 209 T~~~~s~la~ 218 (278)
T PRK11557 209 TGFTPNALQQ 218 (278)
T ss_pred cCCCCCchHH
Confidence 6656666655
No 376
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=43.10 E-value=47 Score=24.85 Aligned_cols=41 Identities=10% Similarity=0.051 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEcC-CCChHHHHHHHHHH
Q 032094 69 LDLPVMNDAARTLSDFGVPYEIKILPP-HQNCKEALSYALSA 109 (147)
Q Consensus 69 SDl~~~~~a~~~L~~fGI~~ev~V~SA-HRtp~~l~~~~~~~ 109 (147)
..=+.|++|.+.|++.||+|+..=+.- .=+.+++.++++..
T Consensus 8 ~~C~~C~ka~~~L~~~gi~~~~idi~~~~~~~~eL~~~l~~~ 49 (131)
T PRK01655 8 PSCTSCRKAKAWLEEHDIPFTERNIFSSPLTIDEIKQILRMT 49 (131)
T ss_pred CCChHHHHHHHHHHHcCCCcEEeeccCChhhHHHHHHHHHHh
Confidence 344789999999999999998665432 22346666666543
No 377
>PRK06940 short chain dehydrogenase; Provisional
Probab=42.99 E-value=1.3e+02 Score=24.21 Aligned_cols=26 Identities=15% Similarity=0.142 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHh-hCCceEEEEecCCC
Q 032094 99 CKEALSYALSAK-ERGIKIIIVGDGVE 124 (147)
Q Consensus 99 p~~l~~~~~~~~-~~g~~ViIAvAG~a 124 (147)
++.+.++++..+ ...++++|..||..
T Consensus 61 ~~~i~~~~~~~~~~g~id~li~nAG~~ 87 (275)
T PRK06940 61 RESVKALAATAQTLGPVTGLVHTAGVS 87 (275)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence 344444443321 13478888888754
No 378
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=42.95 E-value=1.3e+02 Score=25.58 Aligned_cols=49 Identities=20% Similarity=0.197 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHHHHhCC-CeEEEEEc-CCCChHHHHHHHHHHhhCCceEE
Q 032094 69 LDLPVMNDAARTLSDFGV-PYEIKILP-PHQNCKEALSYALSAKERGIKII 117 (147)
Q Consensus 69 SDl~~~~~a~~~L~~fGI-~~ev~V~S-AHRtp~~l~~~~~~~~~~g~~Vi 117 (147)
.+++.+.+..+.+.+.|+ ++.+..+- ...+.+++.++++.+.+.|+++.
T Consensus 137 g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~~~~~gi~~~ 187 (329)
T PRK13361 137 GRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEFCRERGLDIA 187 (329)
T ss_pred CCHHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHHHHhcCCeEE
Confidence 467777788888888888 67765443 33577888888888888777654
No 379
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=42.81 E-value=1.3e+02 Score=23.64 Aligned_cols=46 Identities=11% Similarity=0.094 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEec
Q 032094 74 MNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (147)
Q Consensus 74 ~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvA 121 (147)
++.+.+.++++| |++.+......++...++++.+-.++++.||..+
T Consensus 18 ~~gi~~~~~~~G--~~~~~~~~~~d~~~~~~~i~~~~~~~vdgiii~~ 63 (272)
T cd06313 18 KQAADEAGKLLG--VDVTWYGGALDAVKQVAAIENMASQGWDFIAVDP 63 (272)
T ss_pred HHHHHHHHHHcC--CEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 334445555565 3455555555666666666666566666555544
No 380
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=42.71 E-value=1.3e+02 Score=22.08 Aligned_cols=38 Identities=13% Similarity=0.122 Sum_probs=29.7
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCC
Q 032094 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPH 96 (147)
Q Consensus 59 ~~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAH 96 (147)
+.++||+-++.|...-+...++++.++=...+-+++.+
T Consensus 51 ~d~vvi~lGtNd~~~~~nl~~ii~~~~~~~~ivlv~~~ 88 (150)
T cd01840 51 RKTVVIGLGTNGPFTKDQLDELLDALGPDRQVYLVNPH 88 (150)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHcCCCCEEEEEECC
Confidence 57889999999998888888888888733566556655
No 381
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=42.63 E-value=64 Score=23.71 Aligned_cols=38 Identities=11% Similarity=0.012 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHHHHhCCCeEEEEEcCCC-ChHHHHHHHH
Q 032094 70 DLPVMNDAARTLSDFGVPYEIKILPPHQ-NCKEALSYAL 107 (147)
Q Consensus 70 Dl~~~~~a~~~L~~fGI~~ev~V~SAHR-tp~~l~~~~~ 107 (147)
.=+.|++|.+.|++.||+|+++=.-.+. +.+++.++++
T Consensus 9 ~C~~crkA~~~L~~~gi~~~~~d~~~~p~s~~eL~~~l~ 47 (113)
T cd03033 9 GCANNARQKALLEAAGHEVEVRDLLTEPWTAETLRPFFG 47 (113)
T ss_pred CCHHHHHHHHHHHHcCCCcEEeehhcCCCCHHHHHHHHH
Confidence 3467999999999999999976554444 6677777776
No 382
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.61 E-value=34 Score=29.63 Aligned_cols=52 Identities=17% Similarity=0.093 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCchhh
Q 032094 73 VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG 129 (147)
Q Consensus 73 ~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLpG 129 (147)
+.+..+..|.+-|....-.|...|.....+.++.++ .+++|+++|...-+.+
T Consensus 165 VGkPla~lL~~~~~~~~AtVtvchs~T~~l~~~~~~-----ADIvV~AvG~p~~i~~ 216 (287)
T PRK14181 165 VGKPLAALLMQKHPDTNATVTLLHSQSENLTEILKT-----ADIIIAAIGVPLFIKE 216 (287)
T ss_pred chHHHHHHHHhCcCCCCCEEEEeCCCCCCHHHHHhh-----CCEEEEccCCcCccCH
Confidence 455566666554332245777788766677777653 6999999999876543
No 383
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=42.61 E-value=59 Score=20.85 Aligned_cols=28 Identities=25% Similarity=0.250 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEc-CCCCh
Q 032094 72 PVMNDAARTLSDFGVPYEIKILP-PHQNC 99 (147)
Q Consensus 72 ~~~~~a~~~L~~fGI~~ev~V~S-AHRtp 99 (147)
+.+.++.-.|+..|++|+..-.. .||.+
T Consensus 10 p~~~~v~~~l~~~gl~~~~~~~~~~~~~~ 38 (74)
T cd03058 10 PFVLRVRIALALKGVPYEYVEEDLGNKSE 38 (74)
T ss_pred chHHHHHHHHHHcCCCCEEEEeCcccCCH
Confidence 57889999999999999976544 34443
No 384
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=42.52 E-value=77 Score=22.61 Aligned_cols=43 Identities=9% Similarity=-0.113 Sum_probs=30.8
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHH
Q 032094 65 MESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSA 109 (147)
Q Consensus 65 mGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~ 109 (147)
.|+..=...++.+..+|+..||+|+..=++. .|+...++.+..
T Consensus 10 ~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~--d~~~r~em~~~~ 52 (92)
T cd03030 10 SGSTEIKKRQQEVLGFLEAKKIEFEEVDISM--NEENRQWMRENV 52 (92)
T ss_pred cccHHHHHHHHHHHHHHHHCCCceEEEecCC--CHHHHHHHHHhc
Confidence 4555555667788889999999998666664 577776666544
No 385
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=42.52 E-value=1.5e+02 Score=25.99 Aligned_cols=57 Identities=11% Similarity=0.184 Sum_probs=47.0
Q ss_pred EEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCC---------hHHHHHHHHHHhhCCceEEEEe
Q 032094 62 GIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQN---------CKEALSYALSAKERGIKIIIVG 120 (147)
Q Consensus 62 ~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRt---------p~~l~~~~~~~~~~g~~ViIAv 120 (147)
.+|-|=..+.+.+++.++.|+.+ ++.+.++..|.. ++++.+|.+...+.|+.|.|--
T Consensus 257 ~LI~gvNDs~eda~~La~llk~l--~~~VnLiPyn~~~~~~~~~ps~e~l~~f~~~l~~~gi~v~iR~ 322 (342)
T PRK14454 257 ALVKGVNDSKEDAKELGKLLKGM--LCHVNLIPVNEVKENGFKKSSKEKIKKFKNILKKNGIETTIRR 322 (342)
T ss_pred EeECCCCCCHHHHHHHHHHHhcC--CceEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeC
Confidence 37778777899999999999875 568888988873 6788888888888999998863
No 386
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=42.35 E-value=1.1e+02 Score=20.83 Aligned_cols=42 Identities=10% Similarity=0.143 Sum_probs=26.9
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCC---eEEEEEcCCCChHHHHHHH
Q 032094 65 MESDLDLPVMNDAARTLSDFGVP---YEIKILPPHQNCKEALSYA 106 (147)
Q Consensus 65 mGS~SDl~~~~~a~~~L~~fGI~---~ev~V~SAHRtp~~l~~~~ 106 (147)
+=|.+.=|.|.+|.+.|++++++ +++.....++......++.
T Consensus 4 vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~ 48 (86)
T TIGR02183 4 IFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLE 48 (86)
T ss_pred EEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHH
Confidence 33556779999999999999764 3444455555443333343
No 387
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=42.24 E-value=1.4e+02 Score=26.24 Aligned_cols=60 Identities=10% Similarity=0.180 Sum_probs=44.3
Q ss_pred EEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCC---------hHHHHHHHHHHhhCCceEEEEecCC
Q 032094 62 GIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQN---------CKEALSYALSAKERGIKIIIVGDGV 123 (147)
Q Consensus 62 ~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRt---------p~~l~~~~~~~~~~g~~ViIAvAG~ 123 (147)
.+|=|=..+.+.+++.++.++.++ +.|.++-.|.. ++++.+|.+...+.|+.|.|---.+
T Consensus 268 ~lI~gvNDs~ed~~~La~ll~~l~--~~VnLIPynp~~~~ky~~ps~e~l~~f~~~L~~~gi~v~ir~~~g 336 (356)
T PRK14455 268 ILLGGVNDQVEHAEELADLLKGIK--CHVNLIPVNPVPERDYVRTPKEDIFAFEDTLKKNGVNCTIRREHG 336 (356)
T ss_pred EEeCCCCCCHHHHHHHHHHHhcCC--CcEEEEecCcCCCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCC
Confidence 344444455799999999999886 56777776654 3678888888888999998865444
No 388
>PRK05876 short chain dehydrogenase; Provisional
Probab=42.22 E-value=1.4e+02 Score=24.15 Aligned_cols=12 Identities=8% Similarity=0.454 Sum_probs=9.0
Q ss_pred CceEEEEecCCC
Q 032094 113 GIKIIIVGDGVE 124 (147)
Q Consensus 113 g~~ViIAvAG~a 124 (147)
.++++|-.||..
T Consensus 83 ~id~li~nAg~~ 94 (275)
T PRK05876 83 HVDVVFSNAGIV 94 (275)
T ss_pred CCCEEEECCCcC
Confidence 468888888863
No 389
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=42.12 E-value=2.2e+02 Score=26.02 Aligned_cols=71 Identities=15% Similarity=0.118 Sum_probs=54.0
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEE---cCCCChHHHHHHHHHHhhCCceEEEEecCCCCchhhhh
Q 032094 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKIL---PPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGTC 131 (147)
Q Consensus 60 ~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~---SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLpGvv 131 (147)
.+.-|.-+.||..-++++.+..++.|...++.++ +..-+++.+.++++.+.+-|++ .|+++-+++.|-+--
T Consensus 111 d~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad-~I~i~Dt~G~l~P~~ 184 (448)
T PRK12331 111 DIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGAD-SICIKDMAGILTPYV 184 (448)
T ss_pred CEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCC-EEEEcCCCCCCCHHH
Confidence 3455555778999999999999999987665544 3345679999999888888887 488888888766543
No 390
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=42.01 E-value=86 Score=27.03 Aligned_cols=60 Identities=18% Similarity=0.226 Sum_probs=42.6
Q ss_pred CCeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecC
Q 032094 58 APIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 122 (147)
Q Consensus 58 ~~~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG 122 (147)
+..|.|+.-+..++..+.+++..|.+.|+.+++... .+..++..++ +...|+.-+|.+.-
T Consensus 322 ~~~vlV~~~~~~~~~~~~~i~~~Lr~~gi~v~~~~~--~~~l~k~~~~---a~~~g~~~~i~ig~ 381 (397)
T TIGR00442 322 SPDVYVVPLGEEAELEALKLAQKLRKAGIRVEVDLG--GRKLKKQLKY---ADKLGARFAVILGE 381 (397)
T ss_pred CCcEEEEEeCHHHHHHHHHHHHHHHhCCCeEEEeCC--CCCHHHHHHH---HHHcCCCEEEEECh
Confidence 357888776678888999999999999999887554 2555554444 44567766666644
No 391
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=41.97 E-value=89 Score=22.51 Aligned_cols=36 Identities=14% Similarity=0.088 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHH
Q 032094 69 LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYA 106 (147)
Q Consensus 69 SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~ 106 (147)
+.=+.|++|.+.|++.||+|++.= ..+.|....++.
T Consensus 7 ~~C~~c~ka~~~L~~~~i~~~~id--i~~~~~~~~el~ 42 (117)
T TIGR01617 7 PNCTTCKKARRWLEANGIEYQFID--IGEDGPTREELL 42 (117)
T ss_pred CCCHHHHHHHHHHHHcCCceEEEe--cCCChhhHHHHH
Confidence 344789999999999999877433 345555444444
No 392
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=41.83 E-value=1.8e+02 Score=23.13 Aligned_cols=60 Identities=12% Similarity=0.097 Sum_probs=32.4
Q ss_pred eEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEc-CCCChHHHHHHHHHHhhCCceEEEEec
Q 032094 60 IVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILP-PHQNCKEALSYALSAKERGIKIIIVGD 121 (147)
Q Consensus 60 ~V~IimGS~SD---l~~~~~a~~~L~~fGI~~ev~V~S-AHRtp~~l~~~~~~~~~~g~~ViIAvA 121 (147)
+|++|..+.++ ..+.+.+.+.++++|.... +.. .--.++...++++..-.++++.||..+
T Consensus 1 ~i~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~--~~~~~~~~~~~~~~~l~~~~~~~~dgiii~~ 64 (294)
T cd06316 1 KAAIVMHTSGSDWSNAQVRGAKDEFAKLGIEVV--ATTDAQFDPAKQVADIETTISQKPDIIISIP 64 (294)
T ss_pred CeEEEecCCCChHHHHHHHHHHHHHHHcCCEEE--EecCCCCCHHHHHHHHHHHHHhCCCEEEEcC
Confidence 35666654333 2445555666777775443 222 223555556666555555677666544
No 393
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=41.75 E-value=1.6e+02 Score=24.66 Aligned_cols=67 Identities=15% Similarity=0.096 Sum_probs=42.1
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeE--------------------------EEEEcCCCChHHHHHHHHHHhh-
Q 032094 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYE--------------------------IKILPPHQNCKEALSYALSAKE- 111 (147)
Q Consensus 59 ~~V~IimGS~SDl~~~~~a~~~L~~fGI~~e--------------------------v~V~SAHRtp~~l~~~~~~~~~- 111 (147)
++|+||+|+.+=.- +.++..|-++|-..- ..+..-++..+..++++++...
T Consensus 8 gkvalVTG~s~GIG--~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~~ 85 (270)
T KOG0725|consen 8 GKVALVTGGSSGIG--KAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVEK 85 (270)
T ss_pred CcEEEEECCCChHH--HHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHHH
Confidence 68999999988665 666666666665321 2233345556666666644433
Q ss_pred --CCceEEEEecCCCCch
Q 032094 112 --RGIKIIIVGDGVEAHL 127 (147)
Q Consensus 112 --~g~~ViIAvAG~aAhL 127 (147)
..++++|--||....-
T Consensus 86 ~~GkidiLvnnag~~~~~ 103 (270)
T KOG0725|consen 86 FFGKIDILVNNAGALGLT 103 (270)
T ss_pred hCCCCCEEEEcCCcCCCC
Confidence 2378888877765544
No 394
>PRK12559 transcriptional regulator Spx; Provisional
Probab=41.62 E-value=79 Score=23.79 Aligned_cols=38 Identities=16% Similarity=0.024 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEc-CCCChHHHHHHHHH
Q 032094 71 LPVMNDAARTLSDFGVPYEIKILP-PHQNCKEALSYALS 108 (147)
Q Consensus 71 l~~~~~a~~~L~~fGI~~ev~V~S-AHRtp~~l~~~~~~ 108 (147)
=+.|++|.+.|++.||+|+..-+. --=+.+++.++++.
T Consensus 10 C~~crkA~~~L~~~gi~~~~~di~~~~~s~~el~~~l~~ 48 (131)
T PRK12559 10 CASCRKAKAWLEENQIDYTEKNIVSNSMTVDELKSILRL 48 (131)
T ss_pred ChHHHHHHHHHHHcCCCeEEEEeeCCcCCHHHHHHHHHH
Confidence 468999999999999999966544 44456677777754
No 395
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge
Probab=41.56 E-value=2.1e+02 Score=24.38 Aligned_cols=61 Identities=15% Similarity=0.166 Sum_probs=36.6
Q ss_pred CeEEEEecCCC-CHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCC-ceEEEEe
Q 032094 59 PIVGIIMESDL-DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERG-IKIIIVG 120 (147)
Q Consensus 59 ~~V~IimGS~S-Dl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g-~~ViIAv 120 (147)
.+|+||.-++. ....++...+.|++.|++...... .=...+.+.+.++..++.+ .+|||.+
T Consensus 133 ~~vaii~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~-~~~~~~d~~~~L~~lk~~~~~~viv~~ 195 (382)
T cd06371 133 AHVAIVSSPQDIWVETAQKLASALRAHGLPVGLVTS-MGPDEKGAREALKKVRSADRVRVVIMC 195 (382)
T ss_pred eEEEEEEecccchHHHHHHHHHHHHHCCCcEEEEEE-ecCCHHHHHHHHHHHhcCCCcEEEEEE
Confidence 36888865433 234677777788888887553221 1224556666666666555 5777754
No 396
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=41.52 E-value=1.1e+02 Score=29.12 Aligned_cols=57 Identities=18% Similarity=0.291 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEcCCCChH-HHHHHHHHHhhCCceEEEE---ecCCCCchh
Q 032094 72 PVMNDAARTLSDFGVPYEIKILPPHQNCK-EALSYALSAKERGIKIIIV---GDGVEAHLS 128 (147)
Q Consensus 72 ~~~~~a~~~L~~fGI~~ev~V~SAHRtp~-~l~~~~~~~~~~g~~ViIA---vAG~aAhLp 128 (147)
.-+++-.+.++.||+|.-|-|--.-=.++ ++..+.+.+++.|+.++++ .-|++++++
T Consensus 359 ~NL~RHIenvr~FGvPvVVAINKFd~DTe~Ei~~I~~~c~e~Gv~va~~~~~~~Gg~Gai~ 419 (557)
T PRK13505 359 ANLERHIENIRKFGVPVVVAINKFVTDTDAEIAALKELCEELGVEVALSEVWAKGGEGGVE 419 (557)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHcCCCEEEecccccCCcchHH
Confidence 55667778888999999999987777777 6666668888889987744 345555554
No 397
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=41.25 E-value=48 Score=23.62 Aligned_cols=39 Identities=15% Similarity=0.110 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEcCC-CChHHHHHHHHHHh
Q 032094 72 PVMNDAARTLSDFGVPYEIKILPPH-QNCKEALSYALSAK 110 (147)
Q Consensus 72 ~~~~~a~~~L~~fGI~~ev~V~SAH-Rtp~~l~~~~~~~~ 110 (147)
..+++|.+.|++.||+|+++=..-+ -+.+++.++++..+
T Consensus 7 ~t~rka~~~L~~~gi~~~~~d~~k~p~s~~el~~~l~~~~ 46 (110)
T PF03960_consen 7 STCRKALKWLEENGIEYEFIDYKKEPLSREELRELLSKLG 46 (110)
T ss_dssp HHHHHHHHHHHHTT--EEEEETTTS---HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCeEeehhhhCCCCHHHHHHHHHHhc
Confidence 5789999999999999886544433 35566667776543
No 398
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=41.23 E-value=1.6e+02 Score=22.45 Aligned_cols=59 Identities=12% Similarity=0.170 Sum_probs=32.8
Q ss_pred EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecC
Q 032094 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 122 (147)
Q Consensus 61 V~IimGS~SD---l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG 122 (147)
|+++..+.+| ..+.+.+.+.++++|.... +....... ...+.++....++++.||..+.
T Consensus 2 I~~i~~~~~~~~~~~~~~~i~~~~~~~g~~~~--~~~~~~~~-~~~~~i~~~~~~~vdgiii~~~ 63 (266)
T cd06278 2 IGVVVADLDNPFYSELLEALSRALQARGYQPL--LINTDDDE-DLDAALRQLLQYRVDGVIVTSG 63 (266)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHHHHCCCeEE--EEcCCCCH-HHHHHHHHHHHcCCCEEEEecC
Confidence 5666655444 2334455566777776543 43433333 4455566666667777776554
No 399
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=41.17 E-value=87 Score=26.09 Aligned_cols=44 Identities=14% Similarity=0.132 Sum_probs=33.2
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHH-HHHhhCCceEEEE
Q 032094 66 ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYA-LSAKERGIKIIIV 119 (147)
Q Consensus 66 GS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~-~~~~~~g~~ViIA 119 (147)
...+|.+.+++|.++. =.|-|.|+.+ ..+|+ +.++..|.+|.-+
T Consensus 122 ~rhaDr~Fl~~Ale~s--------~vVYsiH~a~--~~~f~~~~~~~~G~~v~~~ 166 (198)
T COG2263 122 RRHADRPFLLKALEIS--------DVVYSIHKAG--SRDFVEKFAADLGGTVTHI 166 (198)
T ss_pred cccCCHHHHHHHHHhh--------heEEEeeccc--cHHHHHHHHHhcCCeEEEE
Confidence 4559999999999997 4688999998 56666 5566777666544
No 400
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=41.14 E-value=2e+02 Score=26.50 Aligned_cols=70 Identities=14% Similarity=0.143 Sum_probs=54.0
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEE---cCCCChHHHHHHHHHHhhCCceEEEEecCCCCchhhh
Q 032094 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKIL---PPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGT 130 (147)
Q Consensus 60 ~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~---SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLpGv 130 (147)
.+.-+.-+.||+.-++.+.+..++.|...+..++ ++--+++.+.++++.+.+-|++ .|+++-+++.|-+-
T Consensus 110 d~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~Gad-~I~i~Dt~G~l~P~ 182 (467)
T PRK14041 110 DIIRIFDALNDIRNLEKSIEVAKKHGAHVQGAISYTVSPVHTLEYYLEFARELVDMGVD-SICIKDMAGLLTPK 182 (467)
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHCCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCC-EEEECCccCCcCHH
Confidence 4556666889999999999999999998775553 2222579999999888888887 57888887776543
No 401
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=41.08 E-value=84 Score=19.64 Aligned_cols=38 Identities=13% Similarity=0.291 Sum_probs=26.7
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChH
Q 032094 61 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCK 100 (147)
Q Consensus 61 V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~ 100 (147)
|+|+.-..++........+.|+..+ +++.+++.+..+.
T Consensus 1 v~i~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~ 38 (115)
T cd01653 1 VAVLLFPGFEELELASPLDALREAG--AEVDVVSPDGGPV 38 (115)
T ss_pred CEEEecCCCchhhhHHHHHHHHHCC--CeEEEEcCCCCce
Confidence 4566666677767777888888887 6677777666543
No 402
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=41.06 E-value=64 Score=22.80 Aligned_cols=29 Identities=7% Similarity=0.100 Sum_probs=25.7
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHhCCCeE
Q 032094 61 VGIIMESDLDLPVMNDAARTLSDFGVPYE 89 (147)
Q Consensus 61 V~IimGS~SDl~~~~~a~~~L~~fGI~~e 89 (147)
-.||++++.+-.+.++..+.++..+||+.
T Consensus 26 kLViiA~Da~~~~~k~i~~~c~~~~Vpv~ 54 (82)
T PRK13601 26 LQVYIAKDAEEHVTKKIKELCEEKSIKIV 54 (82)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHhCCCCEE
Confidence 47788888888999999999999999993
No 403
>PRK08643 acetoin reductase; Validated
Probab=40.96 E-value=1.4e+02 Score=23.14 Aligned_cols=25 Identities=8% Similarity=0.270 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHhh--CCceEEEEecCC
Q 032094 99 CKEALSYALSAKE--RGIKIIIVGDGV 123 (147)
Q Consensus 99 p~~l~~~~~~~~~--~g~~ViIAvAG~ 123 (147)
++.+.+..+.... .+++++|-.||.
T Consensus 63 ~~~~~~~~~~~~~~~~~id~vi~~ag~ 89 (256)
T PRK08643 63 RDQVFAAVRQVVDTFGDLNVVVNNAGV 89 (256)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 4444444433321 357888888875
No 404
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=40.90 E-value=1.2e+02 Score=26.29 Aligned_cols=25 Identities=8% Similarity=0.210 Sum_probs=20.8
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEE
Q 032094 69 LDLPVMNDAARTLSDFGVPYEIKIL 93 (147)
Q Consensus 69 SDl~~~~~a~~~L~~fGI~~ev~V~ 93 (147)
-+...+++.++-+++.|||+++-++
T Consensus 21 ~~~~ev~~v~~~~~~~~iP~d~i~l 45 (340)
T cd06597 21 DTQAEVMRQMDAHEEHGIPVTVVVI 45 (340)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEE
Confidence 4667788888899999999998665
No 405
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=40.78 E-value=1.7e+02 Score=22.73 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=14.3
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhC
Q 032094 59 PIVGIIMESDLDLPVMNDAARTLSDFG 85 (147)
Q Consensus 59 ~~V~IimGS~SDl~~~~~a~~~L~~fG 85 (147)
+++.+|+|..+.+ ....++.|.+-|
T Consensus 11 ~k~ilItGas~~I--G~~la~~l~~~G 35 (256)
T PRK06124 11 GQVALVTGSARGL--GFEIARALAGAG 35 (256)
T ss_pred CCEEEEECCCchH--HHHHHHHHHHcC
Confidence 4677778876654 344444444444
No 406
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=40.78 E-value=1.5e+02 Score=22.10 Aligned_cols=58 Identities=21% Similarity=0.215 Sum_probs=37.4
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEE
Q 032094 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKII 117 (147)
Q Consensus 60 ~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~Vi 117 (147)
.+.++..+..++..+++..+.|+++|++.-+-+.-.........++.+..++.|+.++
T Consensus 118 vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~vl 175 (179)
T cd03110 118 ALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLNDEIAEEIEDYCEEEGIPIL 175 (179)
T ss_pred EEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEeCCCCCcchHHHHHHHHHHcCCCeE
Confidence 4666667778899999999999999998654444444333333444444445555544
No 407
>cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors, characterized by their response to glutamate agonists: N-methyl-d -aspartate (NMDA) and non-NMDA receptors. NMDA receptors
Probab=40.78 E-value=1.5e+02 Score=23.79 Aligned_cols=61 Identities=18% Similarity=0.146 Sum_probs=30.6
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEec
Q 032094 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (147)
Q Consensus 59 ~~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvA 121 (147)
.+|+|+.-.+.-...++...+.+++.|+....... ....+.+..++...+..+.++||...
T Consensus 128 ~~vaii~~~~~~~~~l~~~~~~~~~~g~~v~~~~~--~~~~~d~~~~l~~i~~~~~d~Vi~~~ 188 (324)
T cd06368 128 RKFVYIYDSDEGLLRLQELLDALSPKGIQVTVRRL--DDDTDMYRPLLKEIKREKERRIILDC 188 (324)
T ss_pred CEEEEEECCcHhHHHHHHHHHhhccCCceEEEEEe--cCCchHHHHHHHHHhhccCceEEEEC
Confidence 35777764333333444454555555655443332 22222455566556666666666543
No 408
>PRK06455 riboflavin synthase; Provisional
Probab=40.60 E-value=85 Score=25.10 Aligned_cols=58 Identities=14% Similarity=0.051 Sum_probs=44.3
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhC--CCeE-EEEEcCCCChHHHHHHHHHHhhCCceEEEEe
Q 032094 60 IVGIIMESDLDLPVMNDAARTLSDFG--VPYE-IKILPPHQNCKEALSYALSAKERGIKIIIVG 120 (147)
Q Consensus 60 ~V~IimGS~SDl~~~~~a~~~L~~fG--I~~e-v~V~SAHRtp~~l~~~~~~~~~~g~~ViIAv 120 (147)
+|+|+-.-=++....+-|.+.|+++| +.++ ++|=++.=.|-...++++ ..+++.+||.
T Consensus 3 kigIV~s~fn~~~L~~gAi~~L~~~g~~~~I~v~~VPGa~ELP~aakkL~~---~~~yDaVIaL 63 (155)
T PRK06455 3 KIGIADTTFARVDMGSAAIDELRKLDPSAKIIRYTVPGIKDLPVAAKKLIE---EEGCDIVMAL 63 (155)
T ss_pred EEEEEEEecchHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHh---cCCCCEEEEe
Confidence 68999988888888899999999977 3332 456667777777777764 3568888875
No 409
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=40.55 E-value=1.2e+02 Score=25.88 Aligned_cols=50 Identities=18% Similarity=0.098 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHHHhCCCeEEEEEc---------------------CCCChHHHHHHHHHHhhCCceEEEEe
Q 032094 70 DLPVMNDAARTLSDFGVPYEIKILP---------------------PHQNCKEALSYALSAKERGIKIIIVG 120 (147)
Q Consensus 70 Dl~~~~~a~~~L~~fGI~~ev~V~S---------------------AHRtp~~l~~~~~~~~~~g~~ViIAv 120 (147)
....+.+.++.+++.|||+++-++- .+|-|+ ..++++...++|++|++-+
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~lddw~~~~~~~~g~~~~~~f~~d~~~FPd-p~~mi~~Lh~~G~~~~~~i 91 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQDWTGRRETSFGDRLWWNWEWDPERYPG-LDELIEELKARGIRVLTYI 91 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEccccCcccccccceeeeeeEEChhhCCC-HHHHHHHHHHCCCEEEEEe
Confidence 5566788888899999999977652 224454 5677777888899888765
No 410
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=40.43 E-value=1e+02 Score=22.37 Aligned_cols=38 Identities=21% Similarity=0.394 Sum_probs=28.8
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCCh
Q 032094 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNC 99 (147)
Q Consensus 60 ~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp 99 (147)
+|+|+.....++.......+.|+.-| +++.++|.+..|
T Consensus 3 ~v~ill~~g~~~~e~~~~~~~~~~a~--~~v~vvs~~~~~ 40 (142)
T cd03132 3 KVGILVADGVDAAELSALKAALKAAG--ANVKVVAPTLGG 40 (142)
T ss_pred EEEEEEcCCcCHHHHHHHHHHHHHCC--CEEEEEecCcCc
Confidence 68888877777777777788887666 688888877653
No 411
>PRK07074 short chain dehydrogenase; Provisional
Probab=40.41 E-value=1.7e+02 Score=22.65 Aligned_cols=13 Identities=8% Similarity=0.445 Sum_probs=9.8
Q ss_pred CceEEEEecCCCC
Q 032094 113 GIKIIIVGDGVEA 125 (147)
Q Consensus 113 g~~ViIAvAG~aA 125 (147)
+++++|-.||...
T Consensus 77 ~~d~vi~~ag~~~ 89 (257)
T PRK07074 77 PVDVLVANAGAAR 89 (257)
T ss_pred CCCEEEECCCCCC
Confidence 4788888888643
No 412
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.21 E-value=42 Score=28.94 Aligned_cols=46 Identities=13% Similarity=0.104 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCch
Q 032094 73 VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL 127 (147)
Q Consensus 73 ~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhL 127 (147)
+.+..+..|...| -+|...|+..+.+.++.+. ++++|++.|.+.-+
T Consensus 164 vGrpla~lL~~~~----atVtv~hs~t~~L~~~~~~-----ADIvI~Avgk~~lv 209 (279)
T PRK14178 164 VGRPMAALLLNAD----ATVTICHSKTENLKAELRQ-----ADILVSAAGKAGFI 209 (279)
T ss_pred ccHHHHHHHHhCC----CeeEEEecChhHHHHHHhh-----CCEEEECCCccccc
Confidence 4445555555544 4677789988888887753 69999999987433
No 413
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=40.17 E-value=1.5e+02 Score=23.07 Aligned_cols=49 Identities=27% Similarity=0.361 Sum_probs=37.7
Q ss_pred CCeEEEEecCCCC--HHHHHHHHHHHHHhCCCeEEEEEcCCC--ChHHHHHHHH
Q 032094 58 APIVGIIMESDLD--LPVMNDAARTLSDFGVPYEIKILPPHQ--NCKEALSYAL 107 (147)
Q Consensus 58 ~~~V~IimGS~SD--l~~~~~a~~~L~~fGI~~ev~V~SAHR--tp~~l~~~~~ 107 (147)
.|.||||+=.|-+ -.-.+.|.+.|+.-|+. ++-.+|++. +-+++.+|++
T Consensus 90 ~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~-~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 90 KPVIGVITKIDLPSDDANIERAKKWLKNAGVK-EIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred CCEEEEEECccCccchhhHHHHHHHHHHcCCC-CeEEEECCCCcCHHHHHHHHh
Confidence 3789999977766 77889999999999998 456666654 3667777764
No 414
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=40.13 E-value=58 Score=20.36 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEcC
Q 032094 72 PVMNDAARTLSDFGVPYEIKILPP 95 (147)
Q Consensus 72 ~~~~~a~~~L~~fGI~~ev~V~SA 95 (147)
+.+.++.-.|+..|++|+...+..
T Consensus 10 ~~~~~v~~~l~~~~~~~~~~~i~~ 33 (73)
T cd03056 10 GNCYKVRLLLALLGIPYEWVEVDI 33 (73)
T ss_pred ccHHHHHHHHHHcCCCcEEEEecC
Confidence 567888999999999999887764
No 415
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=40.13 E-value=1.9e+02 Score=23.13 Aligned_cols=65 Identities=6% Similarity=0.020 Sum_probs=38.2
Q ss_pred CeEEEEecCCCCH--HHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCC
Q 032094 59 PIVGIIMESDLDL--PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE 124 (147)
Q Consensus 59 ~~V~IimGS~SDl--~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~a 124 (147)
.+|++|..+.+|. ..++...+.|++.|+.......-.+ ........++.....+.++||..+...
T Consensus 136 ~~v~ii~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~-~~~d~~~~~~~~~~~~~d~i~~~~~~~ 202 (334)
T cd06347 136 KKAAVLYDNSSDYSKGLAKAFKEAFKKLGGEIVAEETFNA-GDTDFSAQLTKIKAKNPDVIFLPGYYT 202 (334)
T ss_pred cEEEEEEeCCCchhHHHHHHHHHHHHHcCCEEEEEEEecC-CCCcHHHHHHHHHhcCCCEEEEcCchh
Confidence 4799998765443 3445556677888875432211122 233455556556666788777765554
No 416
>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excita
Probab=40.11 E-value=2e+02 Score=24.00 Aligned_cols=62 Identities=16% Similarity=0.127 Sum_probs=37.1
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCC--ChHHHHHHHHHHhhCCceEEEEe
Q 032094 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQ--NCKEALSYALSAKERGIKIIIVG 120 (147)
Q Consensus 59 ~~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHR--tp~~l~~~~~~~~~~g~~ViIAv 120 (147)
.+|+||.-++.+...+++..+.+++.|...++....... .-+.+...++..+..+.++||..
T Consensus 127 k~vaii~~~~~~~~~~~~~~~~~~~~g~~i~v~~~~~~~~~~~~d~~~~L~~ik~~~~~~iil~ 190 (382)
T cd06380 127 RKVVYLYDSDRGLLRLQQLLDYLREKDNKWQVTARRVDNVTDEEEFLRLLEDLDRRKEKRIVLD 190 (382)
T ss_pred eEEEEEECCCcchHHHHHHHHHHhccCCceEEEEEEecCCCcHHHHHHHHHHhhcccceEEEEE
Confidence 479999877767777777777778778322222211111 11355566666666667777763
No 417
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=40.05 E-value=74 Score=21.08 Aligned_cols=35 Identities=6% Similarity=0.041 Sum_probs=26.3
Q ss_pred eEEEE-ecCCCCHHHHHHHHHHHHHhCCCeEEEEEc
Q 032094 60 IVGII-MESDLDLPVMNDAARTLSDFGVPYEIKILP 94 (147)
Q Consensus 60 ~V~Ii-mGS~SDl~~~~~a~~~L~~fGI~~ev~V~S 94 (147)
+|.|+ .|-..+..++.++...|.+.||+.+.-..|
T Consensus 3 ~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~~s 38 (75)
T cd04912 3 LLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLISTS 38 (75)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEEcC
Confidence 35554 455677889999999999999998755443
No 418
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=40.04 E-value=1.9e+02 Score=22.86 Aligned_cols=80 Identities=18% Similarity=0.032 Sum_probs=51.1
Q ss_pred CeEEEEecCCCC---HHHHHHHHHHHHHh---CCCeEEEEEcCCCChHHHHHHHHHHh-hCCceEEEEecCCCC--chhh
Q 032094 59 PIVGIIMESDLD---LPVMNDAARTLSDF---GVPYEIKILPPHQNCKEALSYALSAK-ERGIKIIIVGDGVEA--HLSG 129 (147)
Q Consensus 59 ~~V~IimGS~SD---l~~~~~a~~~L~~f---GI~~ev~V~SAHRtp~~l~~~~~~~~-~~g~~ViIAvAG~aA--hLpG 129 (147)
+.+.|+..|.-| ....+...+.++.+ |+++++..+..+..++-+.++.+... ..+.+|+|..+|+-= .|+.
T Consensus 26 ~~~vilv~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~vd~~d~~~~~~~v~~~i~~~~~~~v~vnlsgG~R~l~~~~ 105 (203)
T TIGR01884 26 GDLVILVKSPIEDGARRAVESLRAIISDLGGNLVEGTIKEIELKDVPSILRQMSDIIKEEREPRVIINLSGGMRILILIL 105 (203)
T ss_pred CcEEEEEcCCCchHHHHHHHHHHHHHHHhccCCCcceEEEEecCCHHHHHHHHHHHHHhcccCcEEEEcCCCchHHHHHH
Confidence 457777777643 22333444444555 78899999988877776666664332 233348888777754 6778
Q ss_pred hhhccccCc
Q 032094 130 TCSCCKFSN 138 (147)
Q Consensus 130 vvAg~T~~~ 138 (147)
++|++..+.
T Consensus 106 ~~a~~~~~~ 114 (203)
T TIGR01884 106 LLLAILVKT 114 (203)
T ss_pred HHHHHhccc
Confidence 888876654
No 419
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=39.96 E-value=85 Score=24.58 Aligned_cols=31 Identities=23% Similarity=0.263 Sum_probs=24.7
Q ss_pred EEEcCCCChHHHHHHHHHHhhCCceEEEEec
Q 032094 91 KILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (147)
Q Consensus 91 ~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvA 121 (147)
.|-+..=+.+++.++++.+.++|++||+=+.
T Consensus 43 ~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V 73 (316)
T PF00128_consen 43 AVDPRFGTMEDFKELVDAAHKRGIKVILDVV 73 (316)
T ss_dssp EESTTTBHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred ccccccchhhhhhhhhhccccccceEEEeee
Confidence 4555555688999999999999999997553
No 420
>PRK07677 short chain dehydrogenase; Provisional
Probab=39.88 E-value=1.7e+02 Score=22.81 Aligned_cols=26 Identities=15% Similarity=0.097 Sum_probs=14.8
Q ss_pred ChHHHHHHHHHHhh--CCceEEEEecCC
Q 032094 98 NCKEALSYALSAKE--RGIKIIIVGDGV 123 (147)
Q Consensus 98 tp~~l~~~~~~~~~--~g~~ViIAvAG~ 123 (147)
.++.+.++++.... ..++++|-.||.
T Consensus 61 ~~~~~~~~~~~~~~~~~~id~lI~~ag~ 88 (252)
T PRK07677 61 NPEDVQKMVEQIDEKFGRIDALINNAAG 88 (252)
T ss_pred CHHHHHHHHHHHHHHhCCccEEEECCCC
Confidence 35555555433321 357888888875
No 421
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=39.58 E-value=1.9e+02 Score=24.56 Aligned_cols=52 Identities=10% Similarity=-0.008 Sum_probs=40.3
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCeEEEEEcCC-CChHHHHHHHHHHhhCCceEE
Q 032094 66 ESDLDLPVMNDAARTLSDFGVPYEIKILPPH-QNCKEALSYALSAKERGIKII 117 (147)
Q Consensus 66 GS~SDl~~~~~a~~~L~~fGI~~ev~V~SAH-Rtp~~l~~~~~~~~~~g~~Vi 117 (147)
|....+..+.++.+.|.+.|+++.+..+-.+ -+++++.++++.+.+.|++-+
T Consensus 143 ~~~g~f~~~l~~I~~l~~~G~~v~v~~tv~~~~n~~ei~~~~~~~~~lGv~~i 195 (318)
T TIGR03470 143 CREGVFDRAVEAIREAKARGFRVTTNTTLFNDTDPEEVAEFFDYLTDLGVDGM 195 (318)
T ss_pred cCCCcHHHHHHHHHHHHHCCCcEEEEEEEeCCCCHHHHHHHHHHHHHcCCCEE
Confidence 5556788888999999999998777554323 578999999998888888543
No 422
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=39.56 E-value=1.7e+02 Score=24.47 Aligned_cols=54 Identities=22% Similarity=0.172 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCC
Q 032094 72 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (147)
Q Consensus 72 ~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aA 125 (147)
....-+..++++.|++.-.+++.--|+...+.+.+..+..-|++=|.+..|-.-
T Consensus 57 ~s~~~a~~l~~~~g~~~i~Hlt~rd~n~~~l~~~L~~~~~~Gi~niL~l~GD~~ 110 (287)
T PF02219_consen 57 MSLLAAAKLLKETGIEPIPHLTCRDRNREALQSDLLGAHALGIRNILALTGDPP 110 (287)
T ss_dssp HHHHHHHHHHHHTT--EEEEEESTTSBHHHHHHHHHHHHHTT--EEEEESS-TS
T ss_pred CcHHHHHHHHHHhCCceEEeecccCCCHHHHHHHHHHHHHcCCCeEEEecCCCC
Confidence 334445556678999999999999999999999998889999999999999743
No 423
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=39.55 E-value=51 Score=27.33 Aligned_cols=44 Identities=11% Similarity=0.241 Sum_probs=30.4
Q ss_pred HHHHHHHHhCCCe-EEEEEcCC-CChHHHHHHHHHHhhCCceEEEEecCC
Q 032094 76 DAARTLSDFGVPY-EIKILPPH-QNCKEALSYALSAKERGIKIIIVGDGV 123 (147)
Q Consensus 76 ~a~~~L~~fGI~~-ev~V~SAH-Rtp~~l~~~~~~~~~~g~~ViIAvAG~ 123 (147)
-..-.+.++|++. ++.++|.| |..+.+..+.. ++.+++|--...
T Consensus 105 S~q~a~ARlg~~~~~~~~islHgr~~~~l~~~~~----~~~~~vil~~~~ 150 (210)
T COG2241 105 SVQLAAARLGWPLQDTEVISLHGRPVELLRPLLE----NGRRLVILTPDD 150 (210)
T ss_pred HHHHHHHHhCCChHHeEEEEecCCCHHHHHHHHh----CCceEEEeCCCC
Confidence 3455667899995 59999999 77777766652 445666655444
No 424
>COG0011 Uncharacterized conserved protein [Function unknown]
Probab=39.47 E-value=37 Score=25.30 Aligned_cols=45 Identities=16% Similarity=0.221 Sum_probs=34.7
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCCeEEE----EEcCCCChHHHHHHHHHHhh
Q 032094 65 MESDLDLPVMNDAARTLSDFGVPYEIK----ILPPHQNCKEALSYALSAKE 111 (147)
Q Consensus 65 mGS~SDl~~~~~a~~~L~~fGI~~ev~----V~SAHRtp~~l~~~~~~~~~ 111 (147)
++++|=-+++.++.+.|+++|++|+++ ++=. ..+++.+.++.+..
T Consensus 14 t~~~svs~yVa~~i~~lk~~glky~~~pm~T~iEg--~~del~~~ik~~~E 62 (100)
T COG0011 14 TGGPSVSKYVAEAIEILKESGLKYQLGPMGTVIEG--ELDELMEAVKEAHE 62 (100)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCceeecCcceEEEe--cHHHHHHHHHHHHH
Confidence 457776889999999999999999953 4434 78888888766543
No 425
>PRK05854 short chain dehydrogenase; Provisional
Probab=39.46 E-value=1.2e+02 Score=25.00 Aligned_cols=41 Identities=15% Similarity=0.106 Sum_probs=26.2
Q ss_pred CCeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHH
Q 032094 58 APIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALS 104 (147)
Q Consensus 58 ~~~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~ 104 (147)
.++++||+|+++ -+...+++.|-+-|. .|.++ -|+.++..+
T Consensus 13 ~gk~~lITGas~--GIG~~~a~~La~~G~--~Vil~--~R~~~~~~~ 53 (313)
T PRK05854 13 SGKRAVVTGASD--GLGLGLARRLAAAGA--EVILP--VRNRAKGEA 53 (313)
T ss_pred CCCEEEEeCCCC--hHHHHHHHHHHHCCC--EEEEE--eCCHHHHHH
Confidence 367999999987 556777777777774 33332 355544433
No 426
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=39.30 E-value=84 Score=28.53 Aligned_cols=52 Identities=10% Similarity=-0.097 Sum_probs=43.4
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhC-CCeEEEEEcCCCChHHHHHHHHHHh
Q 032094 59 PIVGIIMESDLDLPVMNDAARTLSDFG-VPYEIKILPPHQNCKEALSYALSAK 110 (147)
Q Consensus 59 ~~V~IimGS~SDl~~~~~a~~~L~~fG-I~~ev~V~SAHRtp~~l~~~~~~~~ 110 (147)
-+|.+|.|---|+--|......|++-+ ++.-+-+++-||.++-+..|.+..+
T Consensus 4 ~Kv~~I~GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~ 56 (383)
T COG0381 4 LKVLTIFGTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFG 56 (383)
T ss_pred eEEEEEEecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHHHHHhC
Confidence 378999999999999999999998887 8888999999998777777775543
No 427
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=39.26 E-value=1.8e+02 Score=22.61 Aligned_cols=39 Identities=13% Similarity=0.182 Sum_probs=22.6
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHH
Q 032094 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEAL 103 (147)
Q Consensus 59 ~~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~ 103 (147)
.+..+|+|+.+.+ ....++.|-+.|. +|+...|.+++++
T Consensus 12 ~k~ilItGa~g~I--G~~la~~l~~~G~----~V~~~~r~~~~~~ 50 (259)
T PRK08213 12 GKTALVTGGSRGL--GLQIAEALGEAGA----RVVLSARKAEELE 50 (259)
T ss_pred CCEEEEECCCchH--HHHHHHHHHHcCC----EEEEEeCCHHHHH
Confidence 3577788877744 4556666666664 2444455555443
No 428
>PRK15005 universal stress protein F; Provisional
Probab=39.24 E-value=1.2e+02 Score=21.35 Aligned_cols=50 Identities=14% Similarity=0.137 Sum_probs=28.7
Q ss_pred HHHHhCCC---eEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCchhhhhhcc
Q 032094 80 TLSDFGVP---YEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGTCSCC 134 (147)
Q Consensus 80 ~L~~fGI~---~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLpGvvAg~ 134 (147)
.++.++.+ ++..+. +-.|. ..+.+.+++.++++||.++.+. .+...+-|.
T Consensus 75 ~~~~~~~~~~~~~~~v~--~G~p~--~~I~~~a~~~~~DLIV~Gs~~~-~~~~~llGS 127 (144)
T PRK15005 75 IIKKFKLPTDRVHVHVE--EGSPK--DRILELAKKIPADMIIIASHRP-DITTYLLGS 127 (144)
T ss_pred HHHHhCCCCCceEEEEe--CCCHH--HHHHHHHHHcCCCEEEEeCCCC-Cchheeecc
Confidence 33445543 444443 44443 5566666777899999987653 455554443
No 429
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=39.05 E-value=1.8e+02 Score=22.83 Aligned_cols=26 Identities=12% Similarity=0.183 Sum_probs=15.2
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCC
Q 032094 59 PIVGIIMESDLDLPVMNDAARTLSDFGV 86 (147)
Q Consensus 59 ~~V~IimGS~SDl~~~~~a~~~L~~fGI 86 (147)
.++.+|+|+.+. +...+++.|-+.|.
T Consensus 10 ~k~~lItGa~~~--iG~~ia~~l~~~G~ 35 (265)
T PRK07097 10 GKIALITGASYG--IGFAIAKAYAKAGA 35 (265)
T ss_pred CCEEEEeCCCch--HHHHHHHHHHHCCC
Confidence 357777777763 34555555555553
No 430
>PLN02530 histidine-tRNA ligase
Probab=38.84 E-value=1.4e+02 Score=27.02 Aligned_cols=57 Identities=14% Similarity=0.078 Sum_probs=39.4
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEe
Q 032094 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120 (147)
Q Consensus 59 ~~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAv 120 (147)
..|.|+.-+......+.+++..|.+-|+..++...+ +..++..++ +...+++.+|.+
T Consensus 402 ~dVlVi~~~~~~~~~A~~ia~~LR~~Gi~vevd~~~--~~l~k~ik~---A~k~g~~~ivii 458 (487)
T PLN02530 402 VDDVVFALDEDLQGAAAGVASRLREKGRSVDLVLEP--KKLKWVFKH---AERIGAKRLVLV 458 (487)
T ss_pred CcEEEEEcChHHHHHHHHHHHHHHHCCCeEEEecCC--CCHHHHHHH---HHHCCCCEEEEE
Confidence 457777766777888999999999999998876543 444554444 445666544444
No 431
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=38.55 E-value=1.3e+02 Score=20.72 Aligned_cols=67 Identities=27% Similarity=0.250 Sum_probs=46.0
Q ss_pred EEEecCCCCHHHHHHHHHHHHHhCCCeE--------------------EEEEcCCCChHHHHHHHHHHhhCCceEEEEec
Q 032094 62 GIIMESDLDLPVMNDAARTLSDFGVPYE--------------------IKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (147)
Q Consensus 62 ~IimGS~SDl~~~~~a~~~L~~fGI~~e--------------------v~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvA 121 (147)
.++.|+..=...+......|..+|.+.. +-++|.-+.+..+.+.++.+..+|++++.-..
T Consensus 16 i~i~g~g~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iS~~g~~~~~~~~~~~a~~~g~~iv~iT~ 95 (139)
T cd05013 16 IYIFGVGSSGLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAANLTPGDVVIAISFSGETKETVEAAEIAKERGAKVIAITD 95 (139)
T ss_pred EEEEEcCchHHHHHHHHHHHHHcCCceEEecCHHHHHHHHHcCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEcC
Confidence 4555665666788888888888887533 55677777778888888888888887654444
Q ss_pred CCCCchh
Q 032094 122 GVEAHLS 128 (147)
Q Consensus 122 G~aAhLp 128 (147)
-..+.|.
T Consensus 96 ~~~~~l~ 102 (139)
T cd05013 96 SANSPLA 102 (139)
T ss_pred CCCChhH
Confidence 3444333
No 432
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=38.39 E-value=2e+02 Score=25.31 Aligned_cols=57 Identities=18% Similarity=0.184 Sum_probs=42.0
Q ss_pred EEEEecCCCCH--------------HHHHHHHHHHHHhCCCeEEEEEcCCCC-hHHHHHHHHHHhhCCceEE
Q 032094 61 VGIIMESDLDL--------------PVMNDAARTLSDFGVPYEIKILPPHQN-CKEALSYALSAKERGIKII 117 (147)
Q Consensus 61 V~IimGS~SDl--------------~~~~~a~~~L~~fGI~~ev~V~SAHRt-p~~l~~~~~~~~~~g~~Vi 117 (147)
..-+..+.||. +-+.++.+.+++.|....+..--+.|+ |+.+.++++.+.+-|++.|
T Consensus 91 ~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~I 162 (378)
T PRK11858 91 AVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEAGADRV 162 (378)
T ss_pred EEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhCCCCEE
Confidence 34444577895 777778888889998777665566665 7888888888877787654
No 433
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=38.36 E-value=1.6e+02 Score=24.71 Aligned_cols=53 Identities=21% Similarity=0.191 Sum_probs=35.6
Q ss_pred EecCCCCHHHHHHHHHHHHHhCCC-eEEEEEc-CCCChHHHHHHHHHHhhCCceE
Q 032094 64 IMESDLDLPVMNDAARTLSDFGVP-YEIKILP-PHQNCKEALSYALSAKERGIKI 116 (147)
Q Consensus 64 imGS~SDl~~~~~a~~~L~~fGI~-~ev~V~S-AHRtp~~l~~~~~~~~~~g~~V 116 (147)
++|..-+++...++.+.|.+.|++ ..+.++- ..-+.+++.++++.+.+.|+++
T Consensus 131 i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~g~n~~ei~~l~~~~~~~gv~~ 185 (334)
T TIGR02666 131 ITRRGGRLEQVLAGIDAALAAGLEPVKLNTVVMRGVNDDEIVDLAEFAKERGVTL 185 (334)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHhcCCeE
Confidence 444455777777888888888886 6665442 2346777777777777777653
No 434
>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore
Probab=38.31 E-value=2.3e+02 Score=23.80 Aligned_cols=64 Identities=17% Similarity=0.182 Sum_probs=35.6
Q ss_pred CeEEEEecCCC-CHHHHHHHHHHHHHhCCCeEEEEEc---CCCChHHHHHHHHHHhhCCceEEEEecC
Q 032094 59 PIVGIIMESDL-DLPVMNDAARTLSDFGVPYEIKILP---PHQNCKEALSYALSAKERGIKIIIVGDG 122 (147)
Q Consensus 59 ~~V~IimGS~S-Dl~~~~~a~~~L~~fGI~~ev~V~S---AHRtp~~l~~~~~~~~~~g~~ViIAvAG 122 (147)
.+|+||.-++. ....++...+.+++.|+...+.|.. .-+....+...++.....+.++||..+.
T Consensus 155 ~~vaii~~~~~~g~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~vIvl~~~ 222 (377)
T cd06379 155 NKVILLVSDDHEGRAAQKRFETLLEEREIEFKIKVEKVVEFEPGEKNVTSLLQEAKELTSRVILLSAS 222 (377)
T ss_pred eEEEEEEEcCcchhHHHHHHHHHHHhcCCccceeeeEEEecCCchhhHHHHHHHHhhcCCeEEEEEcC
Confidence 46777755432 2235666777788888743222221 2233344555555555667888876543
No 435
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=38.11 E-value=1.9e+02 Score=24.57 Aligned_cols=100 Identities=8% Similarity=0.097 Sum_probs=60.9
Q ss_pred eecCceeeecCChHHHhhcccccccccCCCcccccCCCCCCCCCCCeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEE
Q 032094 14 VSRGTIPVLASSNGSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEI 90 (147)
Q Consensus 14 vyrghitVta~~l~~~k~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~SD---l~~~~~a~~~L~~fGI~~ev 90 (147)
|..|.-.|.+ +-+++....++++....-.... .........|++++-..++ .++++.+.+.|++.| |++
T Consensus 20 vln~~~~Vs~----eTr~kV~~a~~elgY~pN~~Ar--~L~~~~s~~Ig~i~p~~~~~~~~~i~~gi~~~~~~~g--y~~ 91 (333)
T COG1609 20 VLNGSPYVSE----ETREKVLAAIKELGYRPNAVAR--SLRTGRTKTIGLVVPDITNPFFAEILKGIEEAAREAG--YSL 91 (333)
T ss_pred HHcCCCCCCH----HHHHHHHHHHHHHCCCCCHHHH--HHHhCCCCEEEEEeCCCCCchHHHHHHHHHHHHHHcC--CEE
Confidence 3344444443 4445555566666553110000 1122344689999987776 344555566666666 477
Q ss_pred EEEcCCCChHHHHHHHHHHhhCCceEEEEec
Q 032094 91 KILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (147)
Q Consensus 91 ~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvA 121 (147)
-+...+..+++..++++....++++=+|...
T Consensus 92 ~l~~~~~~~~~e~~~~~~l~~~~vdGiIi~~ 122 (333)
T COG1609 92 LLANTDDDPEKEREYLETLLQKRVDGLILLG 122 (333)
T ss_pred EEECCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 7888788999999999888888886666554
No 436
>PLN02837 threonine-tRNA ligase
Probab=38.00 E-value=1.5e+02 Score=27.83 Aligned_cols=57 Identities=14% Similarity=0.179 Sum_probs=40.6
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEec
Q 032094 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (147)
Q Consensus 59 ~~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvA 121 (147)
..|.||.-++.+.+.+.+.++.|+..|+.+++ .. . +.+.+-. ++++..|+..+|.+-
T Consensus 517 ~qV~IIpi~~~~~~~A~~Ia~~Lr~~GirVev-~~-~-~slgkki---r~A~~~gip~~IiIG 573 (614)
T PLN02837 517 VQARVLPVTDNELEYCKEVVAKLKAKGIRAEV-CH-G-ERLPKLI---RNAETQKIPLMAVVG 573 (614)
T ss_pred ccEEEEEeChHHHHHHHHHHHHHHHCCCEEEE-eC-C-CCHHHHH---HHHHHcCCCEEEEEc
Confidence 46778877788899999999999999998887 43 2 4444444 444567776655554
No 437
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=37.85 E-value=2.2e+02 Score=23.08 Aligned_cols=64 Identities=14% Similarity=0.113 Sum_probs=40.5
Q ss_pred CeEEEEecCCC-CHHHHHHHHHHHHHhCCCeEEEEEcCCCC--hHHHHHHHHHHhhCCceEEEEecCC
Q 032094 59 PIVGIIMESDL-DLPVMNDAARTLSDFGVPYEIKILPPHQN--CKEALSYALSAKERGIKIIIVGDGV 123 (147)
Q Consensus 59 ~~V~IimGS~S-Dl~~~~~a~~~L~~fGI~~ev~V~SAHRt--p~~l~~~~~~~~~~g~~ViIAvAG~ 123 (147)
.+|+++...+. .....+...+.+++.|+.....+. .-.. ......+++..+..+.++||.....
T Consensus 161 ~~v~~l~~~~~~g~~~~~~~~~~~~~~gi~v~~~~~-~~~~~~~~d~~~~l~~l~~~~~~vvv~~~~~ 227 (348)
T cd06350 161 TWVGLVYSDDDYGRSGLSDLEEELEKNGICIAFVEA-IPPSSTEEDIKRILKKLKSSTARVIVVFGDE 227 (348)
T ss_pred eEEEEEEecchhHHHHHHHHHHHHHHCCCcEEEEEE-ccCCCcHHHHHHHHHHHHhCCCcEEEEEeCc
Confidence 36888875433 345666777788888987554332 2222 4566677777767777888887654
No 438
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=37.69 E-value=1.5e+02 Score=24.16 Aligned_cols=49 Identities=18% Similarity=0.031 Sum_probs=33.9
Q ss_pred CChHHHhhcccccccccCCCcccccCCCCCCCCCCCeEEEEecC--CCCHHHHHHHHHHHHHhCCC
Q 032094 24 SSNGSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMES--DLDLPVMNDAARTLSDFGVP 87 (147)
Q Consensus 24 ~~l~~~k~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS--~SDl~~~~~a~~~L~~fGI~ 87 (147)
-+-++++++++|.++++.... -|-=-||| ++|.+.|+...+.|++-|.=
T Consensus 71 ~~~~~i~~~l~~al~~vp~a~---------------GvnNhmGS~~T~~~~~m~~vl~~l~~~gl~ 121 (213)
T PF04748_consen 71 MSEEEIRKRLEAALARVPGAV---------------GVNNHMGSRFTSDREAMRWVLEVLKERGLF 121 (213)
T ss_dssp S-HHHHHHHHHHHHCCSTT-S---------------EEEEEE-CCHHC-HHHHHHHHHHHHHTT-E
T ss_pred CCHHHHHHHHHHHHHHCCCcE---------------EEecCCCccccCCHHHHHHHHHHHHHcCCE
Confidence 346699999999997776542 24445887 69999999999888887763
No 439
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=37.69 E-value=1.3e+02 Score=27.29 Aligned_cols=36 Identities=19% Similarity=0.168 Sum_probs=27.3
Q ss_pred CChHHHHHHHHHHhhCCceEEEEecCCCCchhhhhhc
Q 032094 97 QNCKEALSYALSAKERGIKIIIVGDGVEAHLSGTCSC 133 (147)
Q Consensus 97 Rtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLpGvvAg 133 (147)
=|.+++.+++++++.+|+.||--+- +=+|...++++
T Consensus 94 YT~~di~eiv~yA~~rgI~VIPEID-~PGH~~a~l~a 129 (445)
T cd06569 94 YSRADYIEILKYAKARHIEVIPEID-MPGHARAAIKA 129 (445)
T ss_pred cCHHHHHHHHHHHHHcCCEEEEccC-CchhHHHHHHh
Confidence 3889999999999999999987763 34555554443
No 440
>PF03618 Kinase-PPPase: Kinase/pyrophosphorylase; InterPro: IPR005177 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.; GO: 0005524 ATP binding, 0016772 transferase activity, transferring phosphorus-containing groups
Probab=37.56 E-value=1.6e+02 Score=25.15 Aligned_cols=48 Identities=25% Similarity=0.257 Sum_probs=39.1
Q ss_pred CCCCHHHHHHHHH-HHHHh-CCCeEEEEEcCCCChHHHHHHHHHHhhCCc
Q 032094 67 SDLDLPVMNDAAR-TLSDF-GVPYEIKILPPHQNCKEALSYALSAKERGI 114 (147)
Q Consensus 67 S~SDl~~~~~a~~-~L~~f-GI~~ev~V~SAHRtp~~l~~~~~~~~~~g~ 114 (147)
|||=-.+++...+ .|.+| +++++++..+.-|+.+++.++++.++.+..
T Consensus 5 SDstGeTAe~v~~A~l~QF~~~~~~~~~~p~I~~~~~~~~il~~i~~~~~ 54 (255)
T PF03618_consen 5 SDSTGETAETVARAALAQFPDVEFEIHRFPFIRTEEQLDEILEEIKEENA 54 (255)
T ss_pred ecCchHHHHHHHHHHHHhCCCCceEEEECCCcCCHHHHHHHHHHHhccCC
Confidence 5555677777666 56789 899999999999999999999988877543
No 441
>PF01910 DUF77: Domain of unknown function DUF77; InterPro: IPR002767 This entry contains several hypothetical proteins of unknown function found in archaebacteria, eukaryotes and eubacteria. The structures of YBL001c from Saccharomyces cerevisiae and its homologue MTH1187 from the archaea Methanobacterium thermoautotrophicum have been determined []. These proteins have a ferredoxin-like alpha/beta sandwich structure with anti-parallel beta-sheets. Generally, they have two domains that form a single beta-sheet dimer, where two dimers pack sheet-to-sheet into a tetramer, some proteins having an extra C-terminal helix. ; PDB: 1LXJ_A 1YQH_A 2EKY_G 2EPI_A 1VK8_D 2IBO_C 1LXN_B.
Probab=37.50 E-value=27 Score=25.04 Aligned_cols=45 Identities=13% Similarity=0.197 Sum_probs=31.6
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCCeEEEEEc--CCCChHHHHHHHHHH
Q 032094 65 MESDLDLPVMNDAARTLSDFGVPYEIKILP--PHQNCKEALSYALSA 109 (147)
Q Consensus 65 mGS~SDl~~~~~a~~~L~~fGI~~ev~V~S--AHRtp~~l~~~~~~~ 109 (147)
.|+.|--+++.++.+.|++.|++|+++=.+ ..=..+++.+.++.+
T Consensus 10 ~~~~s~~~~V~~~i~~i~~sgl~y~v~pm~T~iEGe~dev~~~i~~~ 56 (92)
T PF01910_consen 10 TGGESVSAYVAEAIEVIKESGLKYEVGPMGTTIEGELDEVMALIKEA 56 (92)
T ss_dssp SSSSHHHHHHHHHHHHHHTSSSEEEEETTEEEEEEEHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHcCCceEEcCCccEEEecHHHHHHHHHHH
Confidence 347788899999999999999999865222 111266666666443
No 442
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=37.47 E-value=1.6e+02 Score=26.81 Aligned_cols=58 Identities=16% Similarity=0.194 Sum_probs=41.2
Q ss_pred CCeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEe
Q 032094 58 APIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120 (147)
Q Consensus 58 ~~~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAv 120 (147)
+..|.|+.-++.+...+.+.+..|++-|+.+++... -|.+.+-.+++ ...|+..+|.+
T Consensus 470 p~~v~vi~~~~~~~~~a~~ia~~LR~~Gi~v~~d~~--~~sl~~q~k~A---~~~g~~~~iii 527 (563)
T TIGR00418 470 PVQVVVIPVNERHLDYAKKVAQKLKKAGIRVDVDDR--NERLGKKIREA---QKQKIPYMLVV 527 (563)
T ss_pred CceEEEEEccchHHHHHHHHHHHHHHcCCEEEEECC--CCCHHHHHHHH---HhcCCCEEEEE
Confidence 346778777777888999999999999998887653 35566655555 45667644444
No 443
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=37.35 E-value=1.7e+02 Score=25.48 Aligned_cols=46 Identities=15% Similarity=0.098 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEcCCCC-hHHHHHHHHHHhhCCceEE
Q 032094 72 PVMNDAARTLSDFGVPYEIKILPPHQN-CKEALSYALSAKERGIKII 117 (147)
Q Consensus 72 ~~~~~a~~~L~~fGI~~ev~V~SAHRt-p~~l~~~~~~~~~~g~~Vi 117 (147)
+.+.++.+.+++.|....+...-+.|. |+.+.++++.+.+-|++.|
T Consensus 112 ~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i 158 (363)
T TIGR02090 112 EKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEEAGADRI 158 (363)
T ss_pred HHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHhCCCCEE
Confidence 445667777788998888887777776 5788888888777777653
No 444
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=37.34 E-value=38 Score=25.52 Aligned_cols=38 Identities=16% Similarity=0.085 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhCCCeEEE-EEcCCCChHHHHHHHHH
Q 032094 71 LPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALS 108 (147)
Q Consensus 71 l~~~~~a~~~L~~fGI~~ev~-V~SAHRtp~~l~~~~~~ 108 (147)
=..+++|.+.|++.||+|+++ +..--=+.+++.++++.
T Consensus 11 Cst~RKA~~~L~~~gi~~~~~d~~~~p~t~~eL~~~l~~ 49 (126)
T TIGR01616 11 CANNARQKAALKASGHDVEVQDILKEPWHADTLRPYFGN 49 (126)
T ss_pred CHHHHHHHHHHHHCCCCcEEEeccCCCcCHHHHHHHHHH
Confidence 357899999999999999966 44444566777777764
No 445
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=37.26 E-value=1.5e+02 Score=22.71 Aligned_cols=47 Identities=6% Similarity=0.042 Sum_probs=30.5
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCC--CChHHHHHHH
Q 032094 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPH--QNCKEALSYA 106 (147)
Q Consensus 60 ~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAH--Rtp~~l~~~~ 106 (147)
.|++-.=---+-....++.++|+++|++..+-|++-+ +.|+.+.++.
T Consensus 7 ~V~LTFDDgp~~~~t~~~l~~L~~~~ikaTfFv~g~~~~~~~~~~~~i~ 55 (191)
T TIGR02764 7 KIALTFDISWGNDYTEPILDTLKEYDVKATFFLSGSWAERHPELVKEIV 55 (191)
T ss_pred EEEEEEECCCCcccHHHHHHHHHHcCCCEEEEeccHHHHHCHHHHHHHH
Confidence 4555542222223467889999999999988888733 4566555544
No 446
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=37.14 E-value=1.4e+02 Score=27.06 Aligned_cols=82 Identities=12% Similarity=0.123 Sum_probs=55.1
Q ss_pred CceeeecCChHHHhhcccccccccCCCcccccCCCCCCCCCCCeEEEEecC-CCCHHHHHHHHHHHHHhC--CCeEEEEE
Q 032094 17 GTIPVLASSNGSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMES-DLDLPVMNDAARTLSDFG--VPYEIKIL 93 (147)
Q Consensus 17 ghitVta~~l~~~k~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS-~SDl~~~~~a~~~L~~fG--I~~ev~V~ 93 (147)
-.++|+.++++++.+.+. . ....++ -.|.+|. .-.+..++++++.|+.-+ ...++-|.
T Consensus 266 e~i~i~~~dl~~~~~~l~--~----------------~~~~~~-D~V~lGcPH~S~~El~~ia~ll~gr~~~~~~~~~i~ 326 (400)
T PF04412_consen 266 ERITITDADLEEVYEELN--T----------------AGDEKV-DLVALGCPHLSLEELREIAELLEGRKVHPNVPLWIT 326 (400)
T ss_pred eEEEeCHHHHHHHHHHhc--c----------------CCCCCC-CEEEECCCCCCHHHHHHHHHHHhCCCCCCCceEEEE
Confidence 356777777766666553 0 111222 3444454 567888888999998877 55778888
Q ss_pred cCCCChHHHHH--HHHHHhhCCceEE
Q 032094 94 PPHQNCKEALS--YALSAKERGIKII 117 (147)
Q Consensus 94 SAHRtp~~l~~--~~~~~~~~g~~Vi 117 (147)
..+-.-+...+ |++..++.|.+|+
T Consensus 327 t~~~v~~~a~~~G~~~~le~~G~~iv 352 (400)
T PF04412_consen 327 TSRAVYELAERMGYVERLEKAGVQIV 352 (400)
T ss_pred CCHHHHHHHHhCCHHHHHHHcCCEEE
Confidence 88777788877 8877778777665
No 447
>PLN02780 ketoreductase/ oxidoreductase
Probab=37.05 E-value=2.5e+02 Score=23.53 Aligned_cols=44 Identities=11% Similarity=0.009 Sum_probs=28.1
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHH
Q 032094 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALS 108 (147)
Q Consensus 59 ~~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~ 108 (147)
+++++|+|+++- +.+..++.|.+-|.. |+-..|+++++++..++
T Consensus 53 g~~~lITGAs~G--IG~alA~~La~~G~~----Vil~~R~~~~l~~~~~~ 96 (320)
T PLN02780 53 GSWALVTGPTDG--IGKGFAFQLARKGLN----LVLVARNPDKLKDVSDS 96 (320)
T ss_pred CCEEEEeCCCcH--HHHHHHHHHHHCCCC----EEEEECCHHHHHHHHHH
Confidence 578999999874 456666666666642 33345677766665543
No 448
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=37.00 E-value=2.4e+02 Score=23.18 Aligned_cols=25 Identities=28% Similarity=0.122 Sum_probs=14.5
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhC
Q 032094 59 PIVGIIMESDLDLPVMNDAARTLSDFG 85 (147)
Q Consensus 59 ~~V~IimGS~SDl~~~~~a~~~L~~fG 85 (147)
+++++|+|+.+. +...+++.|-+-|
T Consensus 6 ~k~vlVTGas~g--IG~~~a~~L~~~G 30 (322)
T PRK07453 6 KGTVIITGASSG--VGLYAAKALAKRG 30 (322)
T ss_pred CCEEEEEcCCCh--HHHHHHHHHHHCC
Confidence 467777887764 3344455554445
No 449
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=36.98 E-value=3e+02 Score=25.55 Aligned_cols=72 Identities=11% Similarity=0.063 Sum_probs=52.2
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHH-------------------------------
Q 032094 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALS------------------------------- 108 (147)
Q Consensus 60 ~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~------------------------------- 108 (147)
+|+|+ ||+- .+...+.++++++.=.|++...++|++-+.+.+.+++
T Consensus 59 kI~IL-GSTG--SIGtqtLdVI~~~pd~f~vvaLaag~Ni~lL~~q~~~f~p~~v~v~d~~~~~~l~~~l~~~~~~~~vl 135 (454)
T PLN02696 59 PISLL-GSTG--SIGTQTLDIVAENPDKFKVVALAAGSNVTLLADQVRKFKPKLVAVRNESLVDELKEALADLDDKPEII 135 (454)
T ss_pred EEEEe-cCCc--HhhHHHHHHHHhCccccEEEEEECCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhcCCCCCcEEE
Confidence 56555 7653 5788899999888667889999999999888873321
Q ss_pred ---------HhhCCceEEEEecCCCCchhhhhhcc
Q 032094 109 ---------AKERGIKIIIVGDGVEAHLSGTCSCC 134 (147)
Q Consensus 109 ---------~~~~g~~ViIAvAG~aAhLpGvvAg~ 134 (147)
++...+++++.+-++.++|.+.++++
T Consensus 136 ~G~egl~~la~~~evDiVV~AIvG~aGL~pTl~AI 170 (454)
T PLN02696 136 PGEEGIVEVARHPEAVTVVTGIVGCAGLKPTVAAI 170 (454)
T ss_pred ECHHHHHHHHcCCCCCEEEEeCccccchHHHHHHH
Confidence 11123678888888888888888765
No 450
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=36.94 E-value=1.5e+02 Score=26.02 Aligned_cols=52 Identities=19% Similarity=0.190 Sum_probs=38.2
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCC-eEEEEEcCC------------CChHHHHHHHHHHhh
Q 032094 59 PIVGIIMESDLDLPVMNDAARTLSDFGVP-YEIKILPPH------------QNCKEALSYALSAKE 111 (147)
Q Consensus 59 ~~V~IimGS~SDl~~~~~a~~~L~~fGI~-~ev~V~SAH------------Rtp~~l~~~~~~~~~ 111 (147)
|.++=|+|+ +|.+...++++.++++|.. +|+.+.++| +.|+.+.++++...+
T Consensus 101 p~i~si~g~-~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~ 165 (420)
T PRK08318 101 ALIASIMVE-CNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKR 165 (420)
T ss_pred eEEEEeccC-CCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHh
Confidence 455555666 3456677888888999976 789988888 577888888876644
No 451
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=36.94 E-value=72 Score=20.98 Aligned_cols=23 Identities=9% Similarity=-0.000 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEc
Q 032094 72 PVMNDAARTLSDFGVPYEIKILP 94 (147)
Q Consensus 72 ~~~~~a~~~L~~fGI~~ev~V~S 94 (147)
+.+.++.-.|++.|++|++.-+.
T Consensus 10 ~~s~rv~~~L~e~gl~~e~~~v~ 32 (73)
T cd03052 10 FSSQKVRLVIAEKGLRCEEYDVS 32 (73)
T ss_pred ccHHHHHHHHHHcCCCCEEEEec
Confidence 44577888999999999987554
No 452
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes. This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Probab=36.92 E-value=1.8e+02 Score=23.16 Aligned_cols=49 Identities=14% Similarity=0.188 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhC-----CCeEEEEEcCCCChHHHHHHHHHHhhC-CceEEEEe
Q 032094 72 PVMNDAARTLSDFG-----VPYEIKILPPHQNCKEALSYALSAKER-GIKIIIVG 120 (147)
Q Consensus 72 ~~~~~a~~~L~~fG-----I~~ev~V~SAHRtp~~l~~~~~~~~~~-g~~ViIAv 120 (147)
+...-+...++++| .++++.+.---..|+...+.++..-.+ ++++||..
T Consensus 18 ~~~~g~~~a~~~~~~~i~G~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~ 72 (333)
T cd06332 18 DIRDGFELALKQLGGKLGGRPVEVVVEDDELKPDVAVQAARKLIEQDKVDVVVGP 72 (333)
T ss_pred HHHHHHHHHHHHhCCCcCCeEEEEEEecCCCCHHHHHHHHHHHHHHcCCcEEEcC
Confidence 34455555556653 346777766666777777766555443 77777753
No 453
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=36.87 E-value=1.2e+02 Score=23.16 Aligned_cols=43 Identities=14% Similarity=0.131 Sum_probs=32.0
Q ss_pred EecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHH
Q 032094 64 IMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALS 108 (147)
Q Consensus 64 imGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~ 108 (147)
|-||+= .+...+.++++++.=.|++.-.+||++.+.+.+.+++
T Consensus 3 ILGsTG--SIG~qtLdVi~~~~d~f~v~~Lsa~~n~~~L~~q~~~ 45 (129)
T PF02670_consen 3 ILGSTG--SIGTQTLDVIRKHPDKFEVVALSAGSNIEKLAEQARE 45 (129)
T ss_dssp EESTTS--HHHHHHHHHHHHCTTTEEEEEEEESSTHHHHHHHHHH
T ss_pred EEcCCc--HHHHHHHHHHHhCCCceEEEEEEcCCCHHHHHHHHHH
Confidence 344442 5778888888888777888888899988888776643
No 454
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=36.71 E-value=56 Score=27.69 Aligned_cols=30 Identities=10% Similarity=0.052 Sum_probs=23.5
Q ss_pred CeEEEEecCCCC-----HHHHHHHHHHHHHhCCCe
Q 032094 59 PIVGIIMESDLD-----LPVMNDAARTLSDFGVPY 88 (147)
Q Consensus 59 ~~V~IimGS~SD-----l~~~~~a~~~L~~fGI~~ 88 (147)
.+|+|++|+.|+ +...+.+.+.|++.|...
T Consensus 4 ~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~~ 38 (333)
T PRK01966 4 MRVALLFGGRSAEHEVSLVSAKSVLKALDKEKYEV 38 (333)
T ss_pred cEEEEEeCCCCCcchhhHHHHHHHHHHhcccCCEE
Confidence 479999999999 456667888887777643
No 455
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=36.71 E-value=2.3e+02 Score=25.13 Aligned_cols=62 Identities=10% Similarity=0.129 Sum_probs=49.2
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCC---------ChHHHHHHHHHHhhCCceEEEEecCC
Q 032094 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQ---------NCKEALSYALSAKERGIKIIIVGDGV 123 (147)
Q Consensus 60 ~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHR---------tp~~l~~~~~~~~~~g~~ViIAvAG~ 123 (147)
...+|-|=..+.+.+++.++.|+.++ +.|.++..|. +++++.+|.+..++.|+.|.|--..+
T Consensus 267 eyvLI~GvNDs~e~a~~La~llk~l~--~~VnLIPyn~~~~~~~~~ps~e~i~~f~~~l~~~gi~vtvR~~~G 337 (356)
T PRK14462 267 EYLVIKDVNDDLKSAKKLVKLLNGIK--AKVNLILFNPHEGSKFERPSLEDMIKFQDYLNSKGLLCTIRESKG 337 (356)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhcC--cEEEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeCCCC
Confidence 36778888899999999999999875 6888888885 35677778877888899998864433
No 456
>PRK08177 short chain dehydrogenase; Provisional
Probab=36.67 E-value=1.9e+02 Score=22.09 Aligned_cols=26 Identities=8% Similarity=0.133 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHhhCCceEEEEecCCC
Q 032094 99 CKEALSYALSAKERGIKIIIVGDGVE 124 (147)
Q Consensus 99 p~~l~~~~~~~~~~g~~ViIAvAG~a 124 (147)
++.+.++.+.....+++++|-.||..
T Consensus 57 ~~~~~~~~~~~~~~~id~vi~~ag~~ 82 (225)
T PRK08177 57 PASLDQLLQRLQGQRFDLLFVNAGIS 82 (225)
T ss_pred HHHHHHHHHHhhcCCCCEEEEcCccc
Confidence 44455555555445689999999874
No 457
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=36.63 E-value=2.7e+02 Score=23.67 Aligned_cols=73 Identities=15% Similarity=0.094 Sum_probs=47.3
Q ss_pred CCeEEEEecCCCCHHHHH----HHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCchhhhhh
Q 032094 58 APIVGIIMESDLDLPVMN----DAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGTCS 132 (147)
Q Consensus 58 ~~~V~IimGS~SDl~~~~----~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLpGvvA 132 (147)
..+|++++-+..+ |+.. -+.+.++++|+...+. ...+-.++...++++..-.++++.||...--..+|..++-
T Consensus 23 ~~~i~~v~k~~~~-pf~~~~~~Gi~~aa~~~G~~v~~~-~~~~~d~~~q~~~i~~li~~~vdgIiv~~~d~~al~~~l~ 99 (336)
T PRK15408 23 AERIAFIPKLVGV-GFFTSGGNGAKEAGKELGVDVTYD-GPTEPSVSGQVQLINNFVNQGYNAIIVSAVSPDGLCPALK 99 (336)
T ss_pred CcEEEEEECCCCC-HHHHHHHHHHHHHHHHhCCEEEEE-CCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHH
Confidence 3478888855443 4433 4456667888655432 3344456666678888888899998887666666666654
No 458
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=36.54 E-value=2.2e+02 Score=22.96 Aligned_cols=30 Identities=10% Similarity=-0.172 Sum_probs=18.6
Q ss_pred HHHHHHhhCCceEEEEecCCCCchhhhhhcc
Q 032094 104 SYALSAKERGIKIIIVGDGVEAHLSGTCSCC 134 (147)
Q Consensus 104 ~~~~~~~~~g~~ViIAvAG~aAhLpGvvAg~ 134 (147)
++.+..++..++++|+.-+.. ++++.+++.
T Consensus 81 ~l~~~i~~~~pDvVi~~~~~~-~~~~~~~~~ 110 (348)
T TIGR01133 81 QARRILKKFKPDAVIGFGGYV-SGPAGLAAK 110 (348)
T ss_pred HHHHHHHhcCCCEEEEcCCcc-cHHHHHHHH
Confidence 344445567799999986554 455555443
No 459
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=36.54 E-value=1.1e+02 Score=26.40 Aligned_cols=81 Identities=14% Similarity=0.155 Sum_probs=46.0
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHhCCCeE-EEEEcCCCChHHHHHHH-HHHhhCCceEEEEecCCCCchhhhhhcccc--
Q 032094 61 VGIIMESDLDLPVMNDAARTLSDFGVPYE-IKILPPHQNCKEALSYA-LSAKERGIKIIIVGDGVEAHLSGTCSCCKF-- 136 (147)
Q Consensus 61 V~IimGS~SDl~~~~~a~~~L~~fGI~~e-v~V~SAHRtp~~l~~~~-~~~~~~g~~ViIAvAG~aAhLpGvvAg~T~-- 136 (147)
+.-++|+.-..-.+.-+.+.+...++++. +.|-.-|..| ++.+|+ +.++.-|+++++.-..- ....+...
T Consensus 31 vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iDTG~~Fp-Et~ef~d~~a~~~gl~l~v~~~~~-----~i~~g~~~~~ 104 (301)
T PRK05253 31 VMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDTGWKFP-EMIEFRDRRAKELGLELIVHSNPE-----GIARGINPFR 104 (301)
T ss_pred EEEecCCHHHHHHHHHHHHhhcccCCCeeEEEEeCCCCCH-HHHHHHHHHHHHhCCCEEEEeChH-----HHhcCCCCCC
Confidence 55667776666666666666555455654 5555556554 566666 44566788888875431 11122211
Q ss_pred CcceeeccccC
Q 032094 137 SNTCYSCSFIK 147 (147)
Q Consensus 137 ~~~~~~~~~~~ 147 (147)
+..||.|...|
T Consensus 105 ~~~~~cC~~lK 115 (301)
T PRK05253 105 HGSAKHTNAMK 115 (301)
T ss_pred CChHHHHHHHH
Confidence 22588886543
No 460
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=36.48 E-value=2e+02 Score=22.51 Aligned_cols=59 Identities=12% Similarity=0.145 Sum_probs=33.9
Q ss_pred eEEEEecC-CCCHHHHH----HHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEec
Q 032094 60 IVGIIMES-DLDLPVMN----DAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (147)
Q Consensus 60 ~V~IimGS-~SDl~~~~----~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvA 121 (147)
+|++|... +.+-|+.. .+.+.++++|+. +.+...- .++...++++....++++-||...
T Consensus 1 ~Igvi~~~~~~~~~f~~~l~~gi~~~~~~~gy~--~~~~~~~-~~~~~~~~~~~l~~~~vdgiii~~ 64 (260)
T cd06304 1 KVALVYDGGGGDKSFNQSAYEGLEKAEKELGVE--VKYVESV-EDADYEPNLRQLAAQGYDLIFGVG 64 (260)
T ss_pred CEEEEecCCCCcchHHHHHHHHHHHHHHhcCce--EEEEecC-CHHHHHHHHHHHHHcCCCEEEECC
Confidence 35666642 23344444 445566677754 4444333 677777777777777777666643
No 461
>PRK03972 ribosomal biogenesis protein; Validated
Probab=36.35 E-value=1.6e+02 Score=24.55 Aligned_cols=58 Identities=10% Similarity=-0.035 Sum_probs=40.2
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCch
Q 032094 61 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL 127 (147)
Q Consensus 61 V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhL 127 (147)
-.|.++-.++...+++|..+.+++|++|- ---+++.+++. . ..+.+.++++.|---||
T Consensus 107 ~iItts~kt~~g~~~~Ak~lA~eLgi~yV---~R~k~Sl~~L~---~---~~~~d~vLVV~~~~~~~ 164 (208)
T PRK03972 107 LVITTAKRVGLDHMAFAQVFAELTGGKFV---PRGGKSLQDIA---D---KYNTDVLGVIERHPRGM 164 (208)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhCCcee---CcCCcCHHHHH---h---hhcCceEEEEecCCCce
Confidence 46888999999999999999999999993 33555555442 2 12345666665544444
No 462
>COG0431 Predicted flavoprotein [General function prediction only]
Probab=36.34 E-value=2.1e+02 Score=22.36 Aligned_cols=71 Identities=10% Similarity=-0.148 Sum_probs=42.7
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHH----hCCCeEEEE--------EcCC--CChHHHHHHHHHHhhCCceEEEEecCC-
Q 032094 59 PIVGIIMESDLDLPVMNDAARTLSD----FGVPYEIKI--------LPPH--QNCKEALSYALSAKERGIKIIIVGDGV- 123 (147)
Q Consensus 59 ~~V~IimGS~SDl~~~~~a~~~L~~----fGI~~ev~V--------~SAH--Rtp~~l~~~~~~~~~~g~~ViIAvAG~- 123 (147)
++|.+|+||.+.-......++.+.+ .+......+ --.+ ..|+.+.++.+.... .+.||-+.--
T Consensus 1 ~kil~i~GS~r~~S~~~~la~~~~~~l~~~~~~~~~~~~~~lP~~~~d~~~~~~p~~v~~~~~~i~~--aD~li~~tPeY 78 (184)
T COG0431 1 MKILIISGSLRRGSFNRALAEAAAKLLPAGGEVEVEFDDLDLPLYNEDLEADGLPPAVQALREAIAA--ADGLIIATPEY 78 (184)
T ss_pred CeEEEEeccCcccchHHHHHHHHHHhhcccCceEEEecccccCCCCcchhhccCCHHHHHHHHHHHh--CCEEEEECCcc
Confidence 3799999999999887777666653 332111111 1123 578888888876544 5555555433
Q ss_pred CCchhhhh
Q 032094 124 EAHLSGTC 131 (147)
Q Consensus 124 aAhLpGvv 131 (147)
-++.||++
T Consensus 79 n~s~pg~l 86 (184)
T COG0431 79 NGSYPGAL 86 (184)
T ss_pred CCCCCHHH
Confidence 44555543
No 463
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=36.31 E-value=1.4e+02 Score=25.75 Aligned_cols=62 Identities=11% Similarity=0.098 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHhCCC-eEE------------------EEEcC----------CCChHHHHHHHHHHhhCCceEEEEec
Q 032094 71 LPVMNDAARTLSDFGVP-YEI------------------KILPP----------HQNCKEALSYALSAKERGIKIIIVGD 121 (147)
Q Consensus 71 l~~~~~a~~~L~~fGI~-~ev------------------~V~SA----------HRtp~~l~~~~~~~~~~g~~ViIAvA 121 (147)
++.+++..+.+..++++ +.+ .-.++ +=|.+++.+++++|+.+|++||--+-
T Consensus 17 ~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~vIPEiD 96 (329)
T cd06568 17 VAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITVVPEID 96 (329)
T ss_pred HHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCEEEEecC
Confidence 56677777777777775 111 11233 34899999999999999999997763
Q ss_pred CCCCchhhhhhc
Q 032094 122 GVEAHLSGTCSC 133 (147)
Q Consensus 122 G~aAhLpGvvAg 133 (147)
+=+|...++++
T Consensus 97 -~PGH~~a~~~~ 107 (329)
T cd06568 97 -MPGHTNAALAA 107 (329)
T ss_pred -CcHHHHHHHHh
Confidence 44555555543
No 464
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=36.25 E-value=1.6e+02 Score=21.07 Aligned_cols=66 Identities=24% Similarity=0.224 Sum_probs=41.1
Q ss_pred EecCCCCHHHHHHHHHHHHHh-CCCeE--------------------EEEEcCCCChHHHHHHHHHHhhCCceEEEEecC
Q 032094 64 IMESDLDLPVMNDAARTLSDF-GVPYE--------------------IKILPPHQNCKEALSYALSAKERGIKIIIVGDG 122 (147)
Q Consensus 64 imGS~SDl~~~~~a~~~L~~f-GI~~e--------------------v~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG 122 (147)
+.|.-+-...+..+...|.++ |+++. +-++|-....+++.+.++.++++|++++.-...
T Consensus 4 i~G~G~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~I~iS~SG~t~~~~~~~~~a~~~g~~vi~iT~~ 83 (120)
T cd05710 4 FVGCGGSLADMYPAKYFLKKESKLPVFVYNAAEFLHTGPKRLTEKSVVILASHSGNTKETVAAAKFAKEKGATVIGLTDD 83 (120)
T ss_pred EEEecHHHHHHhHHHHHHHHhcCCceEEEcHHHHhhcCcccCCCCcEEEEEeCCCCChHHHHHHHHHHHcCCeEEEEECC
Confidence 344445555566666666655 44422 456677777888888888888888876555444
Q ss_pred CCCchhh
Q 032094 123 VEAHLSG 129 (147)
Q Consensus 123 ~aAhLpG 129 (147)
..+.|..
T Consensus 84 ~~s~la~ 90 (120)
T cd05710 84 EDSPLAK 90 (120)
T ss_pred CCCcHHH
Confidence 4555443
No 465
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=36.24 E-value=2.5e+02 Score=26.56 Aligned_cols=71 Identities=17% Similarity=0.069 Sum_probs=54.0
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCC---CChHHHHHHHHHHhhCCceEEEEecCCCCchhhhh
Q 032094 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPH---QNCKEALSYALSAKERGIKIIIVGDGVEAHLSGTC 131 (147)
Q Consensus 60 ~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAH---Rtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLpGvv 131 (147)
.+.-+.-+-||..-++.+.+..++.|..++..++-.. -+++.+.++++.+.+-|++ .|+++-+++.|-+--
T Consensus 106 d~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~Gad-~I~i~Dt~G~~~P~~ 179 (582)
T TIGR01108 106 DVFRIFDALNDPRNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELLEMGVD-SICIKDMAGILTPKA 179 (582)
T ss_pred CEEEEEEecCcHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCC-EEEECCCCCCcCHHH
Confidence 3444556778999999999999999998776654332 3569999999988888887 478888877765543
No 466
>PRK06683 hypothetical protein; Provisional
Probab=36.00 E-value=84 Score=22.03 Aligned_cols=29 Identities=17% Similarity=0.339 Sum_probs=25.9
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHhCCCeE
Q 032094 61 VGIIMESDLDLPVMNDAARTLSDFGVPYE 89 (147)
Q Consensus 61 V~IimGS~SDl~~~~~a~~~L~~fGI~~e 89 (147)
-.|+.+++.|-.+.++....++..+||+.
T Consensus 29 klViiA~Da~~~~~~~i~~~~~~~~Vpv~ 57 (82)
T PRK06683 29 KEVVIAEDADMRLTHVIIRTALQHNIPIT 57 (82)
T ss_pred eEEEEECCCCHHHHHHHHHHHHhcCCCEE
Confidence 46788899999999999999999999984
No 467
>PRK15414 phosphomannomutase CpsG; Provisional
Probab=35.97 E-value=2.9e+02 Score=24.63 Aligned_cols=69 Identities=16% Similarity=0.087 Sum_probs=50.6
Q ss_pred CCeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCC---------CC-----hHHHHHHHHHHhhCCceEEEEecCC
Q 032094 58 APIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPH---------QN-----CKEALSYALSAKERGIKIIIVGDGV 123 (147)
Q Consensus 58 ~~~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAH---------Rt-----p~~l~~~~~~~~~~g~~ViIAvAG~ 123 (147)
..+|+|=.+.-+=..++......|+++|++.+ |...| +. |+.+.++.+.....++++-||.-|-
T Consensus 170 ~lkVvvD~~~G~~~~~~~~l~~~l~~lG~~v~--v~~~~~~pdg~F~~~~p~P~~~~~l~~l~~~v~~~~adlGia~DgD 247 (456)
T PRK15414 170 PLKLVINSGNGAAGPVVDAIEARFKALGAPVE--LIKVHNTPDGNFPNGIPNPLLPECRDDTRNAVIKHGADMGIAFDGD 247 (456)
T ss_pred CCEEEEECCCCcchhhHHHHHHHHHhcCCCeE--EEEeecCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 45899988888888888888888999998544 44433 22 3466667777777889999998876
Q ss_pred CCchh
Q 032094 124 EAHLS 128 (147)
Q Consensus 124 aAhLp 128 (147)
+--+.
T Consensus 248 aDR~~ 252 (456)
T PRK15414 248 FDRCF 252 (456)
T ss_pred cceEE
Confidence 65443
No 468
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=35.75 E-value=1.6e+02 Score=24.95 Aligned_cols=43 Identities=12% Similarity=0.032 Sum_probs=30.8
Q ss_pred HHHHHHHHhCCCeEEEEE---cCCC-ChHHHHHHHHHHhhCCceEEE
Q 032094 76 DAARTLSDFGVPYEIKIL---PPHQ-NCKEALSYALSAKERGIKIII 118 (147)
Q Consensus 76 ~a~~~L~~fGI~~ev~V~---SAHR-tp~~l~~~~~~~~~~g~~ViI 118 (147)
++.+..++.|....+.+. .++| .|+.+.++++.+.+-|++.|-
T Consensus 119 ~~i~~a~~~G~~v~~~~~d~~~~~r~~~~~~~~~~~~~~~~G~~~i~ 165 (280)
T cd07945 119 EVIEYAIKNGIEVNIYLEDWSNGMRDSPDYVFQLVDFLSDLPIKRIM 165 (280)
T ss_pred HHHHHHHhCCCEEEEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCEEE
Confidence 345566778887776666 3557 488999999888888887543
No 469
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=35.65 E-value=2.5e+02 Score=24.65 Aligned_cols=60 Identities=13% Similarity=0.148 Sum_probs=44.6
Q ss_pred EEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCCC---------ChHHHHHHHHHHhhCCceEEEEecCC
Q 032094 62 GIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQ---------NCKEALSYALSAKERGIKIIIVGDGV 123 (147)
Q Consensus 62 ~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAHR---------tp~~l~~~~~~~~~~g~~ViIAvAG~ 123 (147)
.+|-|=..+.+.+++.++.|+.+++ .+.++-.|. +.+++.+|.+...+.|+.|.|=-..+
T Consensus 256 vLI~GvNDs~e~~~~L~~ll~~l~~--~vnlIPyn~~~~~~~~~ps~e~i~~f~~~L~~~gi~v~vR~~~G 324 (349)
T PRK14463 256 VMIRGLNDSLEDAKRLVRLLSDIPS--KVNLIPFNEHEGCDFRSPTQEAIDRFHKYLLDKHVTVITRSSRG 324 (349)
T ss_pred EEeCCCCCCHHHHHHHHHHHhccCc--eEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCC
Confidence 4444555668889999999998765 788888786 35667788888888899998864443
No 470
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=35.60 E-value=97 Score=22.54 Aligned_cols=62 Identities=16% Similarity=0.097 Sum_probs=34.3
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHhCCC------------------------eEEEEEcCCCChHHHHHHHHHHhhCCceE
Q 032094 61 VGIIMESDLDLPVMNDAARTLSDFGVP------------------------YEIKILPPHQNCKEALSYALSAKERGIKI 116 (147)
Q Consensus 61 V~IimGS~SDl~~~~~a~~~L~~fGI~------------------------~ev~V~SAHRtp~~l~~~~~~~~~~g~~V 116 (147)
|+|+=.|+.--.....+...|.+.|.+ ..+.++-.=..|+.+.++++++.+.|++.
T Consensus 3 iAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~~~~~~~v~~~~~~g~~~ 82 (116)
T PF13380_consen 3 IAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPPDKVPEIVDEAAALGVKA 82 (116)
T ss_dssp EEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-HHHHHHHHHHHHHHT-SE
T ss_pred EEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCHHHHHHHHHHHHHcCCCE
Confidence 555555554466677777777777621 22333444455667777777777777777
Q ss_pred EEEecC
Q 032094 117 IIVGDG 122 (147)
Q Consensus 117 iIAvAG 122 (147)
++-.+|
T Consensus 83 v~~~~g 88 (116)
T PF13380_consen 83 VWLQPG 88 (116)
T ss_dssp EEE-TT
T ss_pred EEEEcc
Confidence 777777
No 471
>PRK15482 transcriptional regulator MurR; Provisional
Probab=35.60 E-value=2.5e+02 Score=23.04 Aligned_cols=69 Identities=17% Similarity=0.130 Sum_probs=49.4
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhCCCeE--------------------EEEEcCCCChHHHHHHHHHHhhCCceEEEE
Q 032094 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYE--------------------IKILPPHQNCKEALSYALSAKERGIKIIIV 119 (147)
Q Consensus 60 ~V~IimGS~SDl~~~~~a~~~L~~fGI~~e--------------------v~V~SAHRtp~~l~~~~~~~~~~g~~ViIA 119 (147)
+| .+.|..+-...++....-|..+|.++. +-++|..+...++.+.++.+..+|+++|.-
T Consensus 137 ~I-~i~G~G~S~~~A~~l~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~Dv~i~iS~sg~t~~~~~~~~~a~~~g~~iI~I 215 (285)
T PRK15482 137 FI-QITGLGGSALVGRDLSFKLMKIGYRVACEADTHVQATVSQALKKGDVQIAISYSGSKKEIVLCAEAARKQGATVIAI 215 (285)
T ss_pred ee-EEEEeChhHHHHHHHHHHHHhCCCeeEEeccHhHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 44 455555558899988888888887532 567778888888999999999999886555
Q ss_pred ecCCCCchhh
Q 032094 120 GDGVEAHLSG 129 (147)
Q Consensus 120 vAG~aAhLpG 129 (147)
-....+-|..
T Consensus 216 T~~~~s~la~ 225 (285)
T PRK15482 216 TSLADSPLRR 225 (285)
T ss_pred eCCCCCchHH
Confidence 4444555543
No 472
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=35.43 E-value=1.4e+02 Score=20.15 Aligned_cols=36 Identities=17% Similarity=0.140 Sum_probs=26.6
Q ss_pred CCeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcC
Q 032094 58 APIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPP 95 (147)
Q Consensus 58 ~~~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SA 95 (147)
++.+-+..-..| +.+.++...|+..|++|+...+..
T Consensus 16 ~~~~~Ly~~~~s--p~~~kv~~~L~~~gl~~~~~~v~~ 51 (89)
T cd03055 16 PGIIRLYSMRFC--PYAQRARLVLAAKNIPHEVININL 51 (89)
T ss_pred CCcEEEEeCCCC--chHHHHHHHHHHcCCCCeEEEeCC
Confidence 345555544433 899999999999999999766653
No 473
>cd00002 YbaK_deacylase This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins. These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS) inserted (INS) editing domain. The bacterial amino acid trans-editing enzyme YbaK is a deacylase that hydrolyzes cysteinyl-tRNA(Pro)'s mischarged by prolyl-tRNA synthetase. YbaK also hydrolyzes glycyl-tRNA's, alanyl-tRNA's, seryl-tRNA's, and prolyl-tRNA's. YbaK is homologous to the INS domain of prolyl-tRNA synthetase (ProRS) as well as the trans-editing enzyme ProX of Aeropyrum pernix which hydrolyzes alanyl-tRNA's and glycyl-tRNA's.
Probab=35.20 E-value=54 Score=24.61 Aligned_cols=46 Identities=24% Similarity=0.253 Sum_probs=29.7
Q ss_pred HHHHHHHHhCCCeEEEEEc--CC-CChHHHHHHHHHHhhCCceEEEEec
Q 032094 76 DAARTLSDFGVPYEIKILP--PH-QNCKEALSYALSAKERGIKIIIVGD 121 (147)
Q Consensus 76 ~a~~~L~~fGI~~ev~V~S--AH-Rtp~~l~~~~~~~~~~g~~ViIAvA 121 (147)
.+.+.|++.||+|++..-. ++ ++.+++.+.......+.+|.+|--.
T Consensus 3 ~~~~~L~~~~i~~~~~~h~~~~~~~t~~e~~~~~~~~~~~~~K~li~~~ 51 (152)
T cd00002 3 PAIRLLDKAKIPYELHEYEHDEDASDGLEAAEKLGLDPEQVFKTLVVEG 51 (152)
T ss_pred HHHHHHHHcCCCeEEEeecCCCCcCCHHHHHHHhCCCHHHeEEEEEEEc
Confidence 4567899999999987753 33 5777776666433333455555433
No 474
>PLN02378 glutathione S-transferase DHAR1
Probab=35.11 E-value=60 Score=25.46 Aligned_cols=33 Identities=21% Similarity=0.283 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHH
Q 032094 72 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALS 104 (147)
Q Consensus 72 ~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~ 104 (147)
|.+.++.-.|++.|++||+..+..+..|++..+
T Consensus 21 p~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~l~ 53 (213)
T PLN02378 21 PFSQRALLTLEEKSLTYKIHLINLSDKPQWFLD 53 (213)
T ss_pred cchHHHHHHHHHcCCCCeEEEeCcccCCHHHHH
Confidence 488899999999999999888877655654433
No 475
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=35.10 E-value=1.3e+02 Score=22.97 Aligned_cols=70 Identities=11% Similarity=0.098 Sum_probs=33.6
Q ss_pred EEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEc----CCCChHHHHHHHHHHhhCCceEEEEecCCCCchhhhhhcccc
Q 032094 62 GIIMESDLDLPVMNDAARTLSDFGVPYEIKILP----PHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGTCSCCKF 136 (147)
Q Consensus 62 ~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~S----AHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLpGvvAg~T~ 136 (147)
.|=+|...|+. ..+.|+.|.=+-+.+++- .-|.|+++.+.++.+..+ .-|++--+|++..=.-..+++|-
T Consensus 31 ~vs~Gn~~dv~----~~d~l~~~~~D~~t~~I~ly~E~~~d~~~f~~~~~~a~~~-KPVv~lk~Grt~~g~~aa~sHTg 104 (138)
T PF13607_consen 31 VVSVGNEADVD----FADLLEYLAEDPDTRVIVLYLEGIGDGRRFLEAARRAARR-KPVVVLKAGRTEAGARAAASHTG 104 (138)
T ss_dssp EEE-TT-SSS-----HHHHHHHHCT-SS--EEEEEES--S-HHHHHHHHHHHCCC-S-EEEEE----------------
T ss_pred EEEeCccccCC----HHHHHHHHhcCCCCCEEEEEccCCCCHHHHHHHHHHHhcC-CCEEEEeCCCchhhhhhhhccCC
Confidence 57789999985 456777777665555554 457899999999888766 67888888875444444444443
No 476
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=35.10 E-value=1.5e+02 Score=26.49 Aligned_cols=46 Identities=17% Similarity=0.048 Sum_probs=34.8
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhCCCeE-EEEEcCCCChHH-HHHHHH
Q 032094 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYE-IKILPPHQNCKE-ALSYAL 107 (147)
Q Consensus 60 ~V~IimGS~SDl~~~~~a~~~L~~fGI~~e-v~V~SAHRtp~~-l~~~~~ 107 (147)
.|.|.|||.+ ..++++.+.|++-|+..- +++....=.|.+ +.++.+
T Consensus 264 ~viV~~GS~~--~~~keav~~LR~~G~kVGllri~~~rPFP~~~i~~~l~ 311 (394)
T PRK08367 264 IIFVTMGSLA--GTLKEFVDKLREEGYKVGAAKLTVYRPFPVEEIRALAK 311 (394)
T ss_pred EEEEEeCccH--HHHHHHHHHHHhcCCcceeEEEeEecCCCHHHHHHHHc
Confidence 6788889887 789999999999998754 566666677776 444443
No 477
>PRK14102 nifW nitrogenase stabilizing/protective protein; Provisional
Probab=34.96 E-value=23 Score=26.62 Aligned_cols=39 Identities=15% Similarity=0.226 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEcCCCC--hHHHHHHHH
Q 032094 69 LDLPVMNDAARTLSDFGVPYEIKILPPHQN--CKEALSYAL 107 (147)
Q Consensus 69 SDl~~~~~a~~~L~~fGI~~ev~V~SAHRt--p~~l~~~~~ 107 (147)
-++..+..|.+.++-||||||-+|.-..|. .+++-+|+.
T Consensus 6 ~~l~~LssAEdFf~ff~v~YDp~vvnV~RLHILkrf~qyl~ 46 (105)
T PRK14102 6 KEFKKLVDAEDYFQFFELPYDPTVVNVNRLHILKQFSQLIA 46 (105)
T ss_pred HHHHHhccHHHHHHHhCCCCCcchhhHHHHHHHHHHHHHHH
Confidence 456677789999999999999888877775 566666664
No 478
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=34.95 E-value=1.5e+02 Score=25.65 Aligned_cols=35 Identities=26% Similarity=0.246 Sum_probs=27.8
Q ss_pred ChHHHHHHHHHHhhCCceEEEEecCCCCchhhhhhc
Q 032094 98 NCKEALSYALSAKERGIKIIIVGDGVEAHLSGTCSC 133 (147)
Q Consensus 98 tp~~l~~~~~~~~~~g~~ViIAvAG~aAhLpGvvAg 133 (147)
|.+++.+++++++.+|++||-=+- +=+|...++.+
T Consensus 84 T~~di~eiv~yA~~rgI~VIPEID-~PGH~~a~l~~ 118 (357)
T cd06563 84 TQEEIREIVAYAAERGITVIPEID-MPGHALAALAA 118 (357)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecC-CchhHHHHHHh
Confidence 589999999999999999998763 45666666654
No 479
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=34.88 E-value=80 Score=19.60 Aligned_cols=24 Identities=13% Similarity=0.128 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEcC
Q 032094 72 PVMNDAARTLSDFGVPYEIKILPP 95 (147)
Q Consensus 72 ~~~~~a~~~L~~fGI~~ev~V~SA 95 (147)
+.+.++.-.|++.|++|+...+..
T Consensus 10 ~~~~~~~~~L~~~~l~~~~~~v~~ 33 (74)
T cd03051 10 PNPRRVRIFLAEKGIDVPLVTVDL 33 (74)
T ss_pred cchHHHHHHHHHcCCCceEEEeec
Confidence 678899999999999999877664
No 480
>PRK07062 short chain dehydrogenase; Provisional
Probab=34.77 E-value=2.2e+02 Score=22.23 Aligned_cols=26 Identities=12% Similarity=0.110 Sum_probs=16.4
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCC
Q 032094 59 PIVGIIMESDLDLPVMNDAARTLSDFGV 86 (147)
Q Consensus 59 ~~V~IimGS~SDl~~~~~a~~~L~~fGI 86 (147)
+++++|+|+.+.+ ....++.|-+.|.
T Consensus 8 ~k~~lItGas~gi--G~~ia~~l~~~G~ 33 (265)
T PRK07062 8 GRVAVVTGGSSGI--GLATVELLLEAGA 33 (265)
T ss_pred CCEEEEeCCCchH--HHHHHHHHHHCCC
Confidence 4688888888754 3445555555554
No 481
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=34.67 E-value=2.7e+02 Score=23.11 Aligned_cols=73 Identities=8% Similarity=0.005 Sum_probs=42.9
Q ss_pred CCCeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCchhhh
Q 032094 57 DAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGT 130 (147)
Q Consensus 57 ~~~~V~IimGS~SD---l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLpGv 130 (147)
++..|+++....+| ...++.+.+.++++| -+++.+....-.++...++++....++++-||..+......+..
T Consensus 23 ~~~~Igvv~~~~~~~f~~~~~~gi~~~a~~~g-~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~ 98 (330)
T PRK15395 23 ADTRIGVTIYKYDDNFMSVVRKAIEKDAKAAP-DVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAPTV 98 (330)
T ss_pred CCceEEEEEecCcchHHHHHHHHHHHHHHhcC-CeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHH
Confidence 44578888865554 223344556667775 24555533334566666777777777888777765443334433
No 482
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=34.65 E-value=2.4e+02 Score=23.50 Aligned_cols=60 Identities=15% Similarity=0.126 Sum_probs=40.4
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHH-hCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCC
Q 032094 60 IVGIIMESDLDLPVMNDAARTLSD-FGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV 123 (147)
Q Consensus 60 ~V~IimGS~SDl~~~~~a~~~L~~-fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~ 123 (147)
+|.++ |+ +-.+++++++.|++ +|+.. ++..+-.-.|++-.++++.....++++++.+=|.
T Consensus 107 ~v~ll-G~--~~~v~~~a~~~l~~~y~l~i-~g~~~Gyf~~~e~~~i~~~I~~s~~dil~VglG~ 167 (243)
T PRK03692 107 PVFLV-GG--KPEVLAQTEAKLRTQWNVNI-VGSQDGYFTPEQRQALFERIHASGAKIVTVAMGS 167 (243)
T ss_pred eEEEE-CC--CHHHHHHHHHHHHHHhCCEE-EEEeCCCCCHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 56555 65 45589999998854 55543 2222222346777778888888889999988774
No 483
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=34.60 E-value=1.8e+02 Score=21.38 Aligned_cols=46 Identities=11% Similarity=0.136 Sum_probs=29.7
Q ss_pred HHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCC
Q 032094 76 DAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV 123 (147)
Q Consensus 76 ~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~ 123 (147)
-....|+++|..... +.-..-.++.+.+.++.+-++ .+++|..-|.
T Consensus 23 ~l~~~l~~~G~~v~~-~~~v~Dd~~~i~~~i~~~~~~-~DlvittGG~ 68 (133)
T cd00758 23 ALEALLEDLGCEVIY-AGVVPDDADSIRAALIEASRE-ADLVLTTGGT 68 (133)
T ss_pred HHHHHHHHCCCEEEE-eeecCCCHHHHHHHHHHHHhc-CCEEEECCCC
Confidence 344568889966432 223567788888887666444 7888877443
No 484
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=34.55 E-value=53 Score=27.14 Aligned_cols=22 Identities=14% Similarity=0.164 Sum_probs=16.5
Q ss_pred HHHHHHHHhhCCceEEEEecCCCCc-hh
Q 032094 102 ALSYALSAKERGIKIIIVGDGVEAH-LS 128 (147)
Q Consensus 102 l~~~~~~~~~~g~~ViIAvAG~aAh-Lp 128 (147)
+.++.++ .+|+|++.|...- ++
T Consensus 120 l~~~~~~-----ADIVIsAvG~~~~~i~ 142 (197)
T cd01079 120 TLDCLSQ-----SDVVITGVPSPNYKVP 142 (197)
T ss_pred HHHHhhh-----CCEEEEccCCCCCccC
Confidence 5555542 6999999999987 44
No 485
>TIGR02883 spore_cwlD N-acetylmuramoyl-L-alanine amidase CwlD. Members of this protein family are the CwlD family of N-acetylmuramoyl-L-alanine amidase. This family has been called the germination-specific N-acetylmuramoyl-L-alanine amidase. CwlD is required, along with the putative deactylase PdaA, to make muramic delta-lactam, a novel peptidoglycan constituent found only in spores. CwlD mutants show a germination defect.
Probab=34.44 E-value=1.3e+02 Score=23.51 Aligned_cols=56 Identities=9% Similarity=0.003 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEc-C-----------CCChHHHHHHHHHHhhCCceEEEEecCCC
Q 032094 69 LDLPVMNDAARTLSDFGVPYEIKILP-P-----------HQNCKEALSYALSAKERGIKIIIVGDGVE 124 (147)
Q Consensus 69 SDl~~~~~a~~~L~~fGI~~ev~V~S-A-----------HRtp~~l~~~~~~~~~~g~~ViIAvAG~a 124 (147)
=.+.+.....+.|+..|+.+.+.-.. . ++..+.+.+=++.+.+.+.++||.+=--+
T Consensus 27 ~~l~ia~~l~~~L~~~G~~V~ltr~~d~~~~~~~~~~~~~~~~~~L~~R~~~An~~~adlfiSiH~Na 94 (189)
T TIGR02883 27 ITLEIALKLKDYLQEQGALVVMTREDDSDLASEGTKGYSRRKIEDLRKRVKLINESEADLFISIHLNA 94 (189)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCCcCccccccccccccccCCHHHHHHHHHhcCCCEEEEEecCC
Confidence 34678889999999999876644331 1 12223455545556677899999985544
No 486
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=34.44 E-value=65 Score=25.99 Aligned_cols=27 Identities=15% Similarity=0.277 Sum_probs=19.9
Q ss_pred ChHHHHHHHHHHhhCCceEEEEecCCCCchhh
Q 032094 98 NCKEALSYALSAKERGIKIIIVGDGVEAHLSG 129 (147)
Q Consensus 98 tp~~l~~~~~~~~~~g~~ViIAvAG~aAhLpG 129 (147)
+..++..+++ ..+++|+.-.+..||+.
T Consensus 188 ~l~e~~~li~-----~~~l~I~~Dsg~~HlA~ 214 (279)
T cd03789 188 SLRELAALLA-----RADLVVTNDSGPMHLAA 214 (279)
T ss_pred CHHHHHHHHH-----hCCEEEeeCCHHHHHHH
Confidence 4555655554 26999999999999884
No 487
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=34.41 E-value=2.5e+02 Score=24.17 Aligned_cols=59 Identities=8% Similarity=0.031 Sum_probs=39.6
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeE-EEEEcCCCChHHHHHHHHHHhhCCceEEEE
Q 032094 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYE-IKILPPHQNCKEALSYALSAKERGIKIIIV 119 (147)
Q Consensus 59 ~~V~IimGS~SDl~~~~~a~~~L~~fGI~~e-v~V~SAHRtp~~l~~~~~~~~~~g~~ViIA 119 (147)
.+|+|+--++.|+...+...+.+++.|+... ..+.... .+.....++..+..+.++||.
T Consensus 125 k~vaiiYd~~~~~~~lq~l~~~~~~~g~~v~~~~~~~~~--~~d~~~~L~~ik~~~~~~iil 184 (371)
T cd06388 125 NRFVFLYDTDRGYSILQAIMEKAGQNGWQVSAICVENFN--DASYRRLLEDLDRRQEKKFVI 184 (371)
T ss_pred eEEEEEecCCccHHHHHHHHHhhHhcCCeeeeEEeccCC--cHHHHHHHHHhcccccEEEEE
Confidence 4799999888889998888888888897644 2333332 335555555555555665554
No 488
>TIGR00322 diphth2_R diphthamide biosynthesis protein 2-related domain. Because archaeal species are known to have the diphthamide modification to the conserved His of archaeal and eukaryotic EF-2, it may be that the lone homolog of YKL191W in M. jannaschii, A. fulgidus, and M. thermoautotrophicum is orthologous. However, each of these is considerably shorter than YKL191W and seems more closely related to the uncharacterized protein YIL103W than to YKL191W.
Probab=34.38 E-value=1.6e+02 Score=25.75 Aligned_cols=56 Identities=16% Similarity=0.269 Sum_probs=41.4
Q ss_pred CeEEEEecCC---CCHHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEec
Q 032094 59 PIVGIIMESD---LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (147)
Q Consensus 59 ~~V~IimGS~---SDl~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvA 121 (147)
..||||.|+- --+.+++...+.|++-|.++.+-+. =.=+|+++..|. .+++||-+|
T Consensus 233 ~~vGIlvgTl~~q~~~~~~~~l~~ll~~~gkk~y~i~~-~~in~~kL~nf~------eiD~fV~~a 291 (332)
T TIGR00322 233 KKFGVVLSSKGGQGRLRLAKNLKKNLEEAGKTVLIILL-SNVSPAKLLMFD------QIDVFVQVA 291 (332)
T ss_pred CEEEEEEecCccCCCHHHHHHHHHHHHHcCCcEEEEEe-CCCCHHHHhCCC------CcCEEEEec
Confidence 4799999865 4688899999999999998765555 455788887663 256666554
No 489
>PRK05339 PEP synthetase regulatory protein; Provisional
Probab=34.28 E-value=2.1e+02 Score=24.63 Aligned_cols=55 Identities=18% Similarity=0.173 Sum_probs=43.1
Q ss_pred EEecCCCCHHHHHHHHH-HHHHh-CCCeEEEEEcCCCChHHHHHHHHHHhhCCceEE
Q 032094 63 IIMESDLDLPVMNDAAR-TLSDF-GVPYEIKILPPHQNCKEALSYALSAKERGIKII 117 (147)
Q Consensus 63 IimGS~SDl~~~~~a~~-~L~~f-GI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~Vi 117 (147)
|..=|||=-.+++.... .|.+| |++++.+..+.-|+.+++.++++.++.+..-||
T Consensus 7 i~~VSDstGeTAe~v~~A~l~QF~~~~~~~~~~p~v~~~~~~~~i~~~~~~~~~iV~ 63 (269)
T PRK05339 7 VFLVSDSTGETAETVGRAALSQFPNVEFEEHRYPFVRTEEKADEVLEEINAERPIVF 63 (269)
T ss_pred EEEEeCCHHHHHHHHHHHHHHhCCCCCeeEEEeCCcCCHHHHHHHHHHHHhcCCEEE
Confidence 44456777788888777 56789 689999999999999999999988876444443
No 490
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.18 E-value=54 Score=28.52 Aligned_cols=35 Identities=14% Similarity=0.267 Sum_probs=26.6
Q ss_pred EEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCCchhh
Q 032094 90 IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG 129 (147)
Q Consensus 90 v~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aAhLpG 129 (147)
..|...|...+.+.++.++ .+++|+++|...-+.+
T Consensus 186 aTVtvchs~T~~l~~~~~~-----ADIvIsAvGkp~~i~~ 220 (297)
T PRK14167 186 ATVTVCHSRTDDLAAKTRR-----ADIVVAAAGVPELIDG 220 (297)
T ss_pred CEEEEeCCCCCCHHHHHhh-----CCEEEEccCCcCccCH
Confidence 3566678877778777753 6999999999886654
No 491
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=34.17 E-value=1.5e+02 Score=22.55 Aligned_cols=45 Identities=16% Similarity=0.178 Sum_probs=29.5
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhCCC-eEEEEEcCCCChHHHHHHHH
Q 032094 60 IVGIIMESDLDLPVMNDAARTLSDFGVP-YEIKILPPHQNCKEALSYAL 107 (147)
Q Consensus 60 ~V~IimGS~SDl~~~~~a~~~L~~fGI~-~ev~V~SAHRtp~~l~~~~~ 107 (147)
.+.+++.+.|+-+ ..++++.|++.||. |-+++- +=..++|.+++.
T Consensus 109 v~vviTdG~s~d~-~~~~a~~lr~~gv~i~~vG~~--~~~~~eL~~ias 154 (165)
T cd01481 109 FLVLITGGKSQDD-VERPAVALKRAGIVPFAIGAR--NADLAELQQIAF 154 (165)
T ss_pred EEEEEeCCCCcch-HHHHHHHHHHCCcEEEEEeCC--cCCHHHHHHHhC
Confidence 3567777777644 56777889999986 334443 345667776653
No 492
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=34.06 E-value=75 Score=20.36 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhCCCeEEEEEcCC
Q 032094 73 VMNDAARTLSDFGVPYEIKILPPH 96 (147)
Q Consensus 73 ~~~~a~~~L~~fGI~~ev~V~SAH 96 (147)
...++.-.|++.|++|++......
T Consensus 11 ~~~~v~~~L~~~~l~~~~~~~~~~ 34 (73)
T cd03047 11 NVQKVLWLLDELGLPYERIDAGGQ 34 (73)
T ss_pred chHHHHHHHHHcCCCCEEEEeccc
Confidence 456778899999999998776543
No 493
>PRK09701 D-allose transporter subunit; Provisional
Probab=34.05 E-value=2.6e+02 Score=22.79 Aligned_cols=66 Identities=11% Similarity=0.129 Sum_probs=41.3
Q ss_pred CeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCC
Q 032094 59 PIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE 124 (147)
Q Consensus 59 ~~V~IimGS~SD---l~~~~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~a 124 (147)
..|+++....+| ....+.+.+.+++.|+...+.....-..++...++++....++++.||..+...
T Consensus 25 ~~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~ 93 (311)
T PRK09701 25 AEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSS 93 (311)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCh
Confidence 379999877666 233455666777788655543222223556666777666677788887766543
No 494
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=34.03 E-value=1.7e+02 Score=24.67 Aligned_cols=63 Identities=13% Similarity=0.183 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHHHHhCCC-eEEEEE------------------c---------CCCChHHHHHHHHHHhhCCceEEEEec
Q 032094 70 DLPVMNDAARTLSDFGVP-YEIKIL------------------P---------PHQNCKEALSYALSAKERGIKIIIVGD 121 (147)
Q Consensus 70 Dl~~~~~a~~~L~~fGI~-~ev~V~------------------S---------AHRtp~~l~~~~~~~~~~g~~ViIAvA 121 (147)
.++.+++..+.+..++++ +.+++. + -.=|++++.+++++++.+|++||--+-
T Consensus 14 ~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~yA~~rgI~viPEiD 93 (303)
T cd02742 14 SVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEYAAARGIEVIPEID 93 (303)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHHHHHcCCEEEEecc
Confidence 356777888888888876 223222 0 134679999999999999999998774
Q ss_pred CCCCchhhhhhc
Q 032094 122 GVEAHLSGTCSC 133 (147)
Q Consensus 122 G~aAhLpGvvAg 133 (147)
+=+|....+.+
T Consensus 94 -~PGH~~a~~~~ 104 (303)
T cd02742 94 -MPGHSTAFVKS 104 (303)
T ss_pred -chHHHHHHHHh
Confidence 34566665554
No 495
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=34.02 E-value=2.6e+02 Score=23.17 Aligned_cols=57 Identities=16% Similarity=0.135 Sum_probs=39.1
Q ss_pred CCeEEEEecCCCCHHHHHHHHHHHHHhCCC-eEEEEEcCCCChHHHHHHH---HHHhhCCceEEEEe
Q 032094 58 APIVGIIMESDLDLPVMNDAARTLSDFGVP-YEIKILPPHQNCKEALSYA---LSAKERGIKIIIVG 120 (147)
Q Consensus 58 ~~~V~IimGS~SDl~~~~~a~~~L~~fGI~-~ev~V~SAHRtp~~l~~~~---~~~~~~g~~ViIAv 120 (147)
.+.|+|+-+- |.+.+.+.++.|-+-||+ .|+.. |+|+.++.+. ++...+..+++|.+
T Consensus 15 ~~vi~Vvr~~--~~~~a~~~~~al~~gGi~~iEiT~----~tp~a~~~i~~l~~~~~~~~p~~~vGa 75 (222)
T PRK07114 15 TGMVPVFYHA--DVEVAKKVIKACYDGGARVFEFTN----RGDFAHEVFAELVKYAAKELPGMILGV 75 (222)
T ss_pred CCEEEEEEcC--CHHHHHHHHHHHHHCCCCEEEEeC----CCCcHHHHHHHHHHHHHhhCCCeEEee
Confidence 3689999865 889999999999999998 45554 6666655553 23333334565543
No 496
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=33.95 E-value=97 Score=21.59 Aligned_cols=29 Identities=17% Similarity=0.313 Sum_probs=24.4
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHhCCCeE
Q 032094 61 VGIIMESDLDLPVMNDAARTLSDFGVPYE 89 (147)
Q Consensus 61 V~IimGS~SDl~~~~~a~~~L~~fGI~~e 89 (147)
-.||.+++.+-.+.++....+++.+||+.
T Consensus 29 klViiA~D~~~~~~~~i~~~c~~~~Vp~~ 57 (82)
T PRK13602 29 KEVVVAEDADPRLTEKVEALANEKGVPVS 57 (82)
T ss_pred eEEEEECCCCHHHHHHHHHHHHHcCCCEE
Confidence 46677777777899999999999999984
No 497
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=33.87 E-value=2.2e+02 Score=21.95 Aligned_cols=60 Identities=22% Similarity=0.220 Sum_probs=41.9
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcCC---CChHHHHHHHHHHhhCCceEEEEecCC
Q 032094 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPH---QNCKEALSYALSAKERGIKIIIVGDGV 123 (147)
Q Consensus 59 ~~V~IimGS~SDl~~~~~a~~~L~~fGI~~ev~V~SAH---Rtp~~l~~~~~~~~~~g~~ViIAvAG~ 123 (147)
.+|.++-|+. ++++++...|++-.= .++|++.| -.+++.+++++.....+.++++++=|.
T Consensus 49 ~~ifllG~~~---~~~~~~~~~l~~~yP--~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~vglG~ 111 (172)
T PF03808_consen 49 KRIFLLGGSE---EVLEKAAANLRRRYP--GLRIVGYHHGYFDEEEEEAIINRINASGPDIVFVGLGA 111 (172)
T ss_pred CeEEEEeCCH---HHHHHHHHHHHHHCC--CeEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCC
Confidence 4677776664 667777777776422 34444433 367888889988888889999998775
No 498
>cd04335 PrdX_deacylase This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences. The C. sticklandii PrdX protein, a homolog of the YbaK and ProX proteins, and the prolyl-tRNA synthetase-editing domain (ProRS-INS), specifically hydrolyzes Ala-tRNA(Pro). In this CD, many of the eukaryotic editing domains are N-terminal and cis-acting, expressed from a multidomain ProRS, however, similar to the bacterial PrdX, the mammalian, amphibian, and echinoderm PrdX-like proteins are trans-acting, single-domain proteins.
Probab=33.86 E-value=89 Score=23.47 Aligned_cols=45 Identities=20% Similarity=0.247 Sum_probs=30.7
Q ss_pred HHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEE
Q 032094 75 NDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIV 119 (147)
Q Consensus 75 ~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIA 119 (147)
++..+.|+++||+|+..-...-++-++..++......+.+|-++-
T Consensus 2 ~~~~~~L~~~~i~~~~~~~~~~~t~e~~a~~~~~~~~~~~Ktlv~ 46 (156)
T cd04335 2 DELLALLDELGIAYETVEHPPVFTVEEADEVLGELPGAHTKNLFL 46 (156)
T ss_pred hHHHHHHHHCCCceEEEecCCcCCHHHHHHhhccCCCceEEEEEE
Confidence 457788999999999865555667777777664444444555553
No 499
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=33.80 E-value=1.7e+02 Score=20.62 Aligned_cols=57 Identities=14% Similarity=0.241 Sum_probs=38.4
Q ss_pred eEEEEecCCCCHHHH--HHHHHHHHHhCCCeEEEEEcCCCChHHHHHHHHHHhhCCceEEEEecCCCC
Q 032094 60 IVGIIMESDLDLPVM--NDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (147)
Q Consensus 60 ~V~IimGS~SDl~~~--~~a~~~L~~fGI~~ev~V~SAHRtp~~l~~~~~~~~~~g~~ViIAvAG~aA 125 (147)
+|.+++|+--=-..| +++.+.|++.|+++++.=++ ..++..++ ..+++||...-...
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~~~----~~e~~~~~-----~~~D~iv~t~~~~~ 62 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCR----VNEIETYM-----DGVHLICTTARVDR 62 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEec----HHHHhhhc-----CCCCEEEECCcccc
Confidence 588888876555555 88889999999998865443 33443333 34788887764433
No 500
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=33.70 E-value=1.4e+02 Score=23.58 Aligned_cols=45 Identities=18% Similarity=0.041 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHHHhCCCeEEEEEcC---CCChHHHHHHHHHHhhCCc
Q 032094 70 DLPVMNDAARTLSDFGVPYEIKILPP---HQNCKEALSYALSAKERGI 114 (147)
Q Consensus 70 Dl~~~~~a~~~L~~fGI~~ev~V~SA---HRtp~~l~~~~~~~~~~g~ 114 (147)
|.....++.+.|++.|++..+++.-. ..+++++.++++...+.|.
T Consensus 141 ~~~~v~~~i~~l~~~g~~~~v~~vv~~~~~~n~~ei~~l~~~~~~l~~ 188 (235)
T TIGR02493 141 SLQPTLDFAKYLAKRNKPIWIRYVLVPGYTDSEEDIEALAEFVKTLPN 188 (235)
T ss_pred CcHHHHHHHHHHHhCCCcEEEEEeeeCCcCCCHHHHHHHHHHHHhCCC
Confidence 55667788888999999988775522 3467889999988877664
Done!