RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 032094
(147 letters)
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics,
joint center for structural genomics, J protein
structure initiative, PSI; 1.77A {Thermotoga maritima}
SCOP: c.23.8.1
Length = 183
Score = 100 bits (251), Expect = 1e-27
Identities = 38/82 (46%), Positives = 48/82 (58%)
Query: 48 EENPNGDSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYAL 107
+ + P VGIIM SD DLPVM AA L +FG+ YEI I+ H+ YA
Sbjct: 3 SDKIHHHHHHVPRVGIIMGSDSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAK 62
Query: 108 SAKERGIKIIIVGDGVEAHLSG 129
+A+ERGI++II G G AHL G
Sbjct: 63 NAEERGIEVIIAGAGGAAHLPG 84
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta
protein, structural genomics, PSI-2, protein initiative;
1.70A {Mycobacterium tuberculosis}
Length = 174
Score = 97.7 bits (244), Expect = 7e-27
Identities = 33/76 (43%), Positives = 48/76 (63%)
Query: 54 DSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERG 113
+ + P VG+IM SD D PVM DAA L++F +P E++++ H+ + SYA A RG
Sbjct: 3 PAGERPRVGVIMGSDSDWPVMADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARG 62
Query: 114 IKIIIVGDGVEAHLSG 129
+++II G G AHL G
Sbjct: 63 LEVIIAGAGGAAHLPG 78
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase
subunit; purines, pyrimidines, nucleosides, nucleotides,
lyase; 2.20A {Coxiella burnetii}
Length = 169
Score = 92.7 bits (231), Expect = 7e-25
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 55 STDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 114
+ + V I+M SD DL M A L G+P+E IL H+ KE + + +A RG
Sbjct: 3 AMNKIFVAILMGSDSDLSTMETAFTELKSLGIPFEAHILSAHRTPKETVEFVENADNRGC 62
Query: 115 KIIIVGDGVEAHLSG 129
+ I G+ AHL+G
Sbjct: 63 AVFIAAAGLAAHLAG 77
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine
biosynthesis, lyase; 1.74A {Treponema denticola} PDB:
3rgg_A*
Length = 159
Score = 91.5 bits (228), Expect = 2e-24
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Query: 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER-GIKII 117
P+V I+M S D+ A L FG+ Y I+I H+ + +S + K+
Sbjct: 3 PLVIILMGSSSDMGHAEKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLY 62
Query: 118 IVGDGVEAHLSG 129
I G LSG
Sbjct: 63 ITIAGRSNALSG 74
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase,
isomerase,biosynthetic protein; 1.45A {Staphylococcus
aureus subsp}
Length = 163
Score = 91.1 bits (227), Expect = 2e-24
Identities = 29/74 (39%), Positives = 43/74 (58%)
Query: 56 TDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIK 115
++A V +IM S D +M ++ L F +PYE +++ H+ K + +A A+ERGI
Sbjct: 1 SNAMKVAVIMGSSSDWKIMQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGIN 60
Query: 116 IIIVGDGVEAHLSG 129
III G G AHL G
Sbjct: 61 IIIAGAGGAAHLPG 74
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A
{Bacillus anthracis}
Length = 181
Score = 90.8 bits (226), Expect = 4e-24
Identities = 30/75 (40%), Positives = 41/75 (54%)
Query: 55 STDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 114
S +VG+IM S D M A L + +PYE K++ H+ YA +A+ERG+
Sbjct: 19 SHMKSLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGL 78
Query: 115 KIIIVGDGVEAHLSG 129
K+II G G AHL G
Sbjct: 79 KVIIAGAGGAAHLPG 93
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine
biosynthesis, spine, lyase; 1.80A {Bacillus anthracis}
SCOP: c.23.8.1
Length = 170
Score = 90.0 bits (224), Expect = 6e-24
Identities = 29/80 (36%), Positives = 42/80 (52%)
Query: 50 NPNGDSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSA 109
+ + +VG+IM S D M A L + +PYE K++ H+ YA +A
Sbjct: 3 SHHHHHHMKSLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETA 62
Query: 110 KERGIKIIIVGDGVEAHLSG 129
+ERG+K+II G G AHL G
Sbjct: 63 RERGLKVIIAGAGGAAHLPG 82
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer
(ABA) sandwich, rossmann fold, csgid, lyase, structu
genomics; 1.41A {Yersinia pestis} PDB: 1d7a_A* 1qcz_A
2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Length = 174
Score = 89.7 bits (223), Expect = 9e-24
Identities = 25/80 (31%), Positives = 39/80 (48%)
Query: 50 NPNGDSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSA 109
N N + I+M S D M AA L+ VP+ ++++ H+ S+A A
Sbjct: 4 NLNSAYAAGVKIAIVMGSKSDWATMQFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQA 63
Query: 110 KERGIKIIIVGDGVEAHLSG 129
+ G+ +II G+G AHL G
Sbjct: 64 EANGLHVIIAGNGGAAHLPG 83
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural
genomics, center for structural genomics of infec
diseases, csgid; HET: MSE; 1.75A {Francisella tularensis
subsp} PDB: 3opq_A*
Length = 166
Score = 88.5 bits (220), Expect = 3e-23
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 55 STDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 114
+ + VG+IM S D M + L + G+ YE +++ H+ + YA +AKERG+
Sbjct: 2 NAMSVQVGVIMGSKSDWSTMKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGL 61
Query: 115 KIIIVGDGVEAHLSG 129
K+II G G AHL G
Sbjct: 62 KVIIAGAGGAAHLPG 76
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle,
protein stability, lyase; HET: CIT; 1.55A {Acetobacter
aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A
2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Length = 182
Score = 88.5 bits (220), Expect = 3e-23
Identities = 30/82 (36%), Positives = 41/82 (50%)
Query: 48 EENPNGDSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYAL 107
+ AP+VGIIM S D M A L++ +P+E I+ H+ YA
Sbjct: 11 SSALEDKAASAPVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYAR 70
Query: 108 SAKERGIKIIIVGDGVEAHLSG 129
+A ERG+ +II G G AHL G
Sbjct: 71 TAAERGLNVIIAGAGGAAHLPG 92
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold,
structural genomics, NPPSFA; 2.31A {Methanocaldococcus
jannaschii}
Length = 157
Score = 80.3 bits (199), Expect = 3e-20
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIV 119
++ IIM S+ DL + A L +FGV +E+++ H+ + ++K + I
Sbjct: 1 MICIIMGSESDLKIAEKAVNILKEFGVEFEVRVASAHRTPELVEEIVKNSKA---DVFIA 57
Query: 120 GDGVEAHLSG 129
G+ AHL G
Sbjct: 58 IAGLAAHLPG 67
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase;
2.80A {Homo sapiens}
Length = 425
Score = 68.0 bits (166), Expect = 2e-14
Identities = 23/99 (23%), Positives = 35/99 (35%), Gaps = 5/99 (5%)
Query: 44 TVFEEENPNGDSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEAL 103
V E S V ++M S DL + +FG+P E+++ H+ E L
Sbjct: 251 WVAERVELLLKSESQCRVVVLMGSTSDLGHCEKIKKACGNFGIPCELRVTSAHKGPDETL 310
Query: 104 SYALSAKERGI-KIIIVGDGVEAHLSGTCSCCKFSNTCY 141
+ GI + + G L S NT Y
Sbjct: 311 RIKAEYEGDGIPTVFVAVAGRSNGLGPVMS----GNTAY 345
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 1e-04
Identities = 29/144 (20%), Positives = 50/144 (34%), Gaps = 39/144 (27%)
Query: 3 NNSKRPNSVRTVSRGT--IPVLA---SS-NGSATSRRKDD----------SSVREPSTVF 46
+ S+ P S R + +PV + S A+ D ++ P V+
Sbjct: 403 DQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP--VY 460
Query: 47 EEENPNGD--STDAPIVGIIMESDLDLPV-----MNDAARTLSDFGVPYEIKILPP--HQ 97
+ + D I I++ + LPV A + DFG P L H+
Sbjct: 461 DTFD-GSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFG-PGGASGLGVLTHR 518
Query: 98 NCKEALSYALSAKERGIKIIIVGD 121
N K+ G+++I+ G
Sbjct: 519 N-KDG---------TGVRVIVAGT 532
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 27.8 bits (62), Expect = 1.1
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 12/39 (30%)
Query: 109 AKERGIKIIIVGDGVEAHLSGTCSCCKFSNTCYSCSFIK 147
+ IK ++VGDG + K TC S+
Sbjct: 1 GSPQAIKCVVVGDG---------AVGK---TCLLISYTT 27
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 27.7 bits (62), Expect = 1.3
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 12/39 (30%)
Query: 109 AKERGIKIIIVGDGVEAHLSGTCSCCKFSNTCYSCSFIK 147
+ R IK + VGDG + K TC S+
Sbjct: 4 SASRFIKCVTVGDG---------AVGK---TCLLISYTS 30
>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable,
cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus
marinus}
Length = 696
Score = 27.8 bits (62), Expect = 1.4
Identities = 5/15 (33%), Positives = 7/15 (46%), Gaps = 2/15 (13%)
Query: 109 AKERGIKIIIVGDGV 123
R IKI++ D
Sbjct: 321 LHSRKIKIVL--DIT 333
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 27.0 bits (60), Expect = 1.8
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 12/42 (28%)
Query: 106 ALSAKERGIKIIIVGDGVEAHLSGTCSCCKFSNTCYSCSFIK 147
L + + IK ++VGDG + K TC S+
Sbjct: 23 NLYFQGQAIKCVVVGDG---------AVGK---TCLLISYTT 52
>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like,
antiparallel beta-sheet, greek terminal domain,
extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A
Length = 424
Score = 27.4 bits (61), Expect = 1.9
Identities = 5/20 (25%), Positives = 11/20 (55%), Gaps = 2/20 (10%)
Query: 109 AKERGIKIIIVGDGVEAHLS 128
AK++ I++I+ D +
Sbjct: 91 AKKKSIRVIL--DLTPNYRG 108
>2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes,
hydrolase, glycosidase, neopullu; 2.37A {Nostoc
punctiforme} PDB: 2wcs_A 2wkg_A
Length = 488
Score = 27.3 bits (61), Expect = 2.2
Identities = 7/15 (46%), Positives = 11/15 (73%), Gaps = 2/15 (13%)
Query: 109 AKERGIKIIIVGDGV 123
A +R IK+++ DGV
Sbjct: 112 AHQRNIKVVL--DGV 124
>2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national
project on structural and functional analyses; HET: GLC;
2.30A {Thermus thermophilus}
Length = 475
Score = 26.9 bits (60), Expect = 2.7
Identities = 6/15 (40%), Positives = 10/15 (66%), Gaps = 2/15 (13%)
Query: 109 AKERGIKIIIVGDGV 123
A G+++I+ DGV
Sbjct: 106 AHAHGVRVIL--DGV 118
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY
homologue, homodimer, (beta/alpha)5, signaling protein;
HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Length = 140
Score = 26.4 bits (58), Expect = 3.0
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 101 EALSYALSAKERGIKIIIVGDGVEA 125
+ AL+ +++ V DG+EA
Sbjct: 16 RLIQEALANSTVPHEVVTVRDGMEA 40
>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP}
SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Length = 583
Score = 26.9 bits (60), Expect = 3.1
Identities = 7/20 (35%), Positives = 11/20 (55%), Gaps = 2/20 (10%)
Query: 109 AKERGIKIIIVGDGVEAHLS 128
ERGI++++ D V H
Sbjct: 228 CHERGIRVLL--DAVFNHSG 245
>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus
stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB:
1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*
Length = 588
Score = 26.6 bits (59), Expect = 3.4
Identities = 6/20 (30%), Positives = 11/20 (55%), Gaps = 2/20 (10%)
Query: 109 AKERGIKIIIVGDGVEAHLS 128
E+GI++++ D V H
Sbjct: 232 CHEKGIRVML--DAVFNHCG 249
>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase;
2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2
b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A*
1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A*
1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A
Length = 585
Score = 26.6 bits (59), Expect = 3.5
Identities = 10/20 (50%), Positives = 11/20 (55%), Gaps = 2/20 (10%)
Query: 109 AKERGIKIIIVGDGVEAHLS 128
A RGIKII+ D V H
Sbjct: 229 AHRRGIKIIL--DAVFNHAG 246
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural
genomics, protein structure initiative; 1.50A
{Legionella pneumophila subsp}
Length = 143
Score = 26.0 bits (58), Expect = 4.2
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 101 EALSYALSAKERGIKIIIVGDGVEA 125
+++ IKI I G +A
Sbjct: 21 QSVERVFHKISSLIKIEIAKSGNQA 45
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 25.8 bits (57), Expect = 4.7
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 12/39 (30%)
Query: 109 AKERGIKIIIVGDGVEAHLSGTCSCCKFSNTCYSCSFIK 147
A+ RG+K ++VGDG + K T S+
Sbjct: 16 AEGRGVKCVLVGDG---------AVGK---TSLVVSYTT 42
>3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2,
protein structure initiative; 2.00A {Lactobacillus
plantarum}
Length = 449
Score = 25.8 bits (57), Expect = 5.8
Identities = 8/20 (40%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
Query: 109 AKERGIKIIIVGDGVEAHLS 128
A E G+K+++ D V H S
Sbjct: 93 AHELGMKVML--DIVYNHTS 110
>1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A
{Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1
Length = 488
Score = 25.7 bits (57), Expect = 6.6
Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
Query: 109 AKERGIKIIIVGDGVEAHLS 128
A +RGIK+II D H S
Sbjct: 91 AHQRGIKVII--DLPINHTS 108
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 25.8 bits (57), Expect = 7.2
Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 12/64 (18%)
Query: 68 DLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKE------------ALSYALSAKERGIK 115
D+P R + KE L+ A+SA++ G K
Sbjct: 92 GFDMPFGGKWERKFVPVDADKAAQDKAIAAGVKETTDVVIIGSGGAGLAAAVSARDAGAK 151
Query: 116 IIIV 119
+I++
Sbjct: 152 VILL 155
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 25.4 bits (56), Expect = 8.1
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 103 LSYALSAKERGIKIIIV 119
+ +L+AK+ G +I+V
Sbjct: 134 FNASLAAKKAGANVILV 150
>2j9l_A Chloride channel protein 5; ION channel, ION transport,
voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP:
d.37.1.1 PDB: 2ja3_A*
Length = 185
Score = 25.2 bits (55), Expect = 8.5
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Query: 30 TSRRKDDSSVREPSTVFEEENPNG-----DSTDAPIVGIIMESDL 69
T +D +V + T+ E +G +VG ++ DL
Sbjct: 27 TVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDL 71
>3b8z_A Protein adamts-5; alpha/beta, hydrolase; HET: 294; 1.40A {Homo
sapiens} PDB: 3hyg_A* 3hy9_A* 3hy7_A* 3ljt_A*
Length = 217
Score = 25.1 bits (55), Expect = 9.0
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 60 IVGIIM--ESDLDLPVMNDAARTLSDFG 85
+V +++ + D L V +AA TL +F
Sbjct: 52 VVKVVVLGDKDKSLEVSKNAATTLKNFC 79
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose,
(beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga
maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Length = 441
Score = 25.2 bits (56), Expect = 9.3
Identities = 3/10 (30%), Positives = 7/10 (70%)
Query: 109 AKERGIKIII 118
+ GIK+++
Sbjct: 79 FHDSGIKVVL 88
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.131 0.381
Gapped
Lambda K H
0.267 0.0735 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,181,528
Number of extensions: 124905
Number of successful extensions: 475
Number of sequences better than 10.0: 1
Number of HSP's gapped: 469
Number of HSP's successfully gapped: 49
Length of query: 147
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 62
Effective length of database: 4,328,508
Effective search space: 268367496
Effective search space used: 268367496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.2 bits)