RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 032094
(147 letters)
>d1qcza_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole
carboxylase, PurE) {Escherichia coli [TaxId: 562]}
Length = 163
Score = 80.0 bits (197), Expect = 2e-20
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIII 118
V I+M S D M AA VP+ ++++ H+ + S+A SA+E G ++II
Sbjct: 2 ARVAIVMGSKSDWATMQFAAEIFEILNVPHHVEVVSAHRTPDKLFSFAESAEENGYQVII 61
Query: 119 VGDGVEAHLSGTCSCCKFSNTCYSC 143
G G AHL G K
Sbjct: 62 AGAGGAAHLPGMI-AAKTLVPVLGV 85
>d1o4va_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole
carboxylase, PurE) {Thermotoga maritima [TaxId: 2336]}
Length = 169
Score = 76.1 bits (187), Expect = 7e-19
Identities = 38/85 (44%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIII 118
P VGIIM SD DLPVM AA L +FG+ YEI I+ H+ YA +A+ERGI++II
Sbjct: 1 PRVGIIMGSDSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVII 60
Query: 119 VGDGVEAHLSGTCSCCKFSNTCYSC 143
G G AHL G +
Sbjct: 61 AGAGGAAHLPGMVA-SITHLPVIGV 84
>d1xmpa_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole
carboxylase, PurE) {Bacillus anthracis [TaxId: 1392]}
Length = 155
Score = 75.3 bits (185), Expect = 1e-18
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIII 118
+VG+IM S D M A L + +PYE K++ H+ YA +A+ERG+K+II
Sbjct: 2 SLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVII 61
Query: 119 VGDGVEAHLSGTCSCCKFSNTCYSC 143
G G AHL G + K +
Sbjct: 62 AGAGGAAHLPGMVA-AKTNLPVIGV 85
>d1u11a_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole
carboxylase, PurE) {Acetobacter aceti [TaxId: 435]}
Length = 159
Score = 75.0 bits (184), Expect = 2e-18
Identities = 29/86 (33%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 58 APIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKII 117
AP+VGIIM S D M A L++ +P+E I+ H+ YA +A ERG+ +I
Sbjct: 2 APVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVI 61
Query: 118 IVGDGVEAHLSGTCSCCKFSNTCYSC 143
I G G AHL
Sbjct: 62 IAGAGGAAHL-PGMCAAWTRLPVLGV 86
>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella
succinogenes [TaxId: 844]}
Length = 336
Score = 26.6 bits (57), Expect = 1.4
Identities = 4/18 (22%), Positives = 12/18 (66%)
Query: 102 ALSYALSAKERGIKIIIV 119
L A++ +++G+ I++
Sbjct: 17 GLRAAVATQQKGLSTIVL 34
>d1vjfa_ d.116.1.1 (A:) Hypothetical protein CC0111 {Caulobacter
crescentus [TaxId: 155892]}
Length = 168
Score = 26.2 bits (57), Expect = 1.5
Identities = 9/65 (13%), Positives = 17/65 (26%)
Query: 75 NDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGTCSCC 134
D GV ++ PP +E L + K + + D +
Sbjct: 5 ADLFAFFDAHGVDHKTLDHPPVFRVEEGLEIKAAMPGGHTKNLFLKDAKGQLWLISALGE 64
Query: 135 KFSNT 139
+
Sbjct: 65 TTIDL 69
>d1iv8a2 c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase
{Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Length = 653
Score = 26.0 bits (57), Expect = 2.0
Identities = 7/20 (35%), Positives = 10/20 (50%), Gaps = 2/20 (10%)
Query: 109 AKERGIKIIIVGDGVEAHLS 128
A G+ II D V H++
Sbjct: 75 AHTIGLGIIQ--DIVPNHMA 92
>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3
(respiratory fumarate reductase) {Shewanella
frigidimarina [TaxId: 56812]}
Length = 317
Score = 25.7 bits (55), Expect = 2.9
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 103 LSYALSAKERGIKIIIV 119
+ +L+AK+ G +I+V
Sbjct: 32 FNASLAAKKAGANVILV 48
>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3
(respiratory fumarate reductase) {Shewanella
putrefaciens [TaxId: 24]}
Length = 322
Score = 25.3 bits (54), Expect = 3.4
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 103 LSYALSAKERGIKIIIV----GDGVEAHLSGTCSCCKFSNTC 140
L+ A+SA++ G K+I++ G L+ +
Sbjct: 36 LAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQ 77
>d1vkia_ d.116.1.1 (A:) Hypothetical protein Atu3699 {Agrobacterium
tumefaciens, strain C58 [TaxId: 358]}
Length = 165
Score = 25.0 bits (54), Expect = 3.8
Identities = 10/64 (15%), Positives = 18/64 (28%)
Query: 76 DAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGTCSCCK 135
+ L G+ + K P E+ S K + V D + + T
Sbjct: 7 ELFEFLDGLGISHTTKQHEPVFTVAESQSLRDLIPGGHTKNLFVKDKKDQYFVLTVEENA 66
Query: 136 FSNT 139
+
Sbjct: 67 VVDL 70
>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3
(respiratory fumarate reductase) {Shewanella
frigidimarina [TaxId: 56812]}
Length = 308
Score = 25.0 bits (53), Expect = 3.9
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 103 LSYALSAKERGIKIIIV 119
S A+SA + G K+I++
Sbjct: 29 FSAAISATDSGAKVILI 45
>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase
catalytic subunit {Archaeon Pyrococcus abyssi [TaxId:
29292]}
Length = 157
Score = 24.4 bits (52), Expect = 5.7
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 12/30 (40%)
Query: 113 GIKIIIVGDGVEAHLSGTCSCCKFSNTCYS 142
G+KI ++GD K+ T +S
Sbjct: 4 GLKIGLLGDL------------KYGRTVHS 21
>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase
{Escherichia coli [TaxId: 562]}
Length = 330
Score = 24.4 bits (52), Expect = 6.4
Identities = 3/18 (16%), Positives = 7/18 (38%)
Query: 102 ALSYALSAKERGIKIIIV 119
+ AL + G ++
Sbjct: 19 GMRAALQISQSGQTCALL 36
>d1x9ga_ c.33.1.3 (A:) Ribonuclease MAR1 {Leishmania donovani
[TaxId: 5661]}
Length = 192
Score = 23.8 bits (51), Expect = 8.3
Identities = 2/21 (9%), Positives = 8/21 (38%)
Query: 106 ALSAKERGIKIIIVGDGVEAH 126
+ ++ + DG+ +
Sbjct: 117 VADLLDMNKRVFLPKDGLGSQ 137
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.131 0.381
Gapped
Lambda K H
0.267 0.0640 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 534,807
Number of extensions: 23727
Number of successful extensions: 133
Number of sequences better than 10.0: 1
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 19
Length of query: 147
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 70
Effective length of database: 1,350,386
Effective search space: 94527020
Effective search space used: 94527020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (22.8 bits)