BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>032095
MILAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYI
VYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDE
IVWKGLLENTEKDRIRRLVRLKPPNEF

High Scoring Gene Products

Symbol, full name Information P value
AT1G15370 protein from Arabidopsis thaliana 2.2e-66
copZb
coatomer protein complex zeta subunit
gene from Dictyostelium discoideum 1.6e-06

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  032095
        (147 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2037713 - symbol:AT1G15370 "AT1G15370" species...   675  2.2e-66   1
DICTYBASE|DDB_G0293086 - symbol:copZb "coatomer protein c...   110  1.6e-06   1
POMBASE|SPCC576.07 - symbol:ret3 "coatomer zeta subunit (...    98  0.00073   1


>TAIR|locus:2037713 [details] [associations]
            symbol:AT1G15370 "AT1G15370" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0006810
            "transport" evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM]
            InterPro:IPR011012 EMBL:CP002684 GenomeReviews:CT485782_GR
            GO:GO:0006810 EMBL:AC007591 SUPFAM:SSF64356 EMBL:AF336926
            EMBL:AK118698 IPI:IPI00530729 PIR:C86288 RefSeq:NP_172989.1
            UniGene:At.20475 ProteinModelPortal:Q9XI32 IntAct:Q9XI32
            PRIDE:Q9XI32 DNASU:838106 EnsemblPlants:AT1G15370.1 GeneID:838106
            KEGG:ath:AT1G15370 TAIR:At1g15370 eggNOG:NOG295820
            HOGENOM:HOG000006342 InParanoid:Q9XI32 OMA:KICLCLD PhylomeDB:Q9XI32
            ProtClustDB:CLSN2679467 ArrayExpress:Q9XI32 Genevestigator:Q9XI32
            Uniprot:Q9XI32
        Length = 147

 Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
 Identities = 127/146 (86%), Positives = 139/146 (95%)

Query:     1 MILAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYI 60
             MILAVLFANS GN+L+ERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVA HKSVYI
Sbjct:     1 MILAVLFANSVGNVLIERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVACHKSVYI 60

Query:    61 VYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDE 120
             VYT+LGDVSIF+VGKDEYDELALAE I+ IT+AVKD CGK PTER+FLDKYG+ICLCLDE
Sbjct:    61 VYTMLGDVSIFLVGKDEYDELALAETIYIITAAVKDVCGKPPTERVFLDKYGRICLCLDE 120

Query:   121 IVWKGLLENTEKDRIRRLVRLKPPNE 146
             IVW GLLENT+KDRI+RL+RLKPP+E
Sbjct:   121 IVWNGLLENTDKDRIKRLIRLKPPSE 146


>DICTYBASE|DDB_G0293086 [details] [associations]
            symbol:copZb "coatomer protein complex zeta subunit"
            species:44689 "Dictyostelium discoideum" [GO:0006810 "transport"
            evidence=IEA] [GO:0030126 "COPI vesicle coat" evidence=ISS]
            [GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=ISS]
            [GO:0031410 "cytoplasmic vesicle" evidence=IEA] [GO:0016192
            "vesicle-mediated transport" evidence=IEA] [GO:0016020 "membrane"
            evidence=IEA] [GO:0015031 "protein transport" evidence=IEA]
            [GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0030663 "COPI-coated vesicle membrane"
            evidence=IEA] [GO:0000139 "Golgi membrane" evidence=IEA]
            InterPro:IPR011012 PROSITE:PS00989 dictyBase:DDB_G0293086
            GenomeReviews:CM000155_GR GO:GO:0015031 GO:GO:0006891
            InterPro:IPR022775 Pfam:PF01217 SUPFAM:SSF64356 GO:GO:0030126
            EMBL:AAFI02000199 eggNOG:COG5541 RefSeq:XP_629312.1
            ProteinModelPortal:Q54CA7 EnsemblProtists:DDB0305237 GeneID:8629035
            KEGG:ddi:DDB_G0293086 OMA:NNGKRLC Uniprot:Q54CA7
        Length = 178

 Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 43/141 (30%), Positives = 67/141 (47%)

Query:     2 ILAVLFANSEGNILVERFNGVPAEE--RLHWRSFLVKLGADNLKGVKNEELLVASHKSVY 59
             I A++  ++ G  L   F   P      L  +    KL  +  K   N EL +  +K V 
Sbjct:     8 IKAIIVLDNNGKRLCSCFYDPPGTPITPLTEKDKFEKLIFEKCK-TSNCELEIIDNKVV- 65

Query:    60 IVYTVLGDVSIFVVGKD-EYDELALAEVIFAITSAVKDACGK----IPTERLFLDKYGKI 114
              + +   DV IFVVG     +ELAL +V+  + S  K AC      + T++ FL+ Y  I
Sbjct:    66 -IGSKQSDVWIFVVGNSLNSNELALLDVLNTLISLFKKACATDESIMITKKTFLENYALI 124

Query:   115 CLCLDEIVWKGLLENTEKDRI 135
              L +DEIV  G++   +++ I
Sbjct:   125 RLYIDEIVSDGIIFEVDEETI 145


>POMBASE|SPCC576.07 [details] [associations]
            symbol:ret3 "coatomer zeta subunit (predicted)"
            species:4896 "Schizosaccharomyces pombe" [GO:0003674
            "molecular_function" evidence=ND] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006886
            "intracellular protein transport" evidence=IC] [GO:0006890
            "retrograde vesicle-mediated transport, Golgi to ER" evidence=ISO]
            [GO:0030126 "COPI vesicle coat" evidence=ISO] InterPro:IPR011012
            PROSITE:PS00989 PomBase:SPCC576.07 GO:GO:0005829 GO:GO:0005634
            GO:GO:0006886 EMBL:CU329672 GenomeReviews:CU329672_GR
            InterPro:IPR022775 Pfam:PF01217 SUPFAM:SSF64356 GO:GO:0030126
            GO:GO:0006890 eggNOG:COG5541 HOGENOM:HOG000214428 OMA:NNGKRLC
            PIR:T41417 RefSeq:NP_588434.1 ProteinModelPortal:O74891
            STRING:O74891 EnsemblFungi:SPCC576.07.1 GeneID:2539522
            KEGG:spo:SPCC576.07 OrthoDB:EOG44TSJH NextBio:20800683
            Uniprot:O74891
        Length = 190

 Score = 98 (39.6 bits), Expect = 0.00073, P = 0.00073
 Identities = 28/98 (28%), Positives = 52/98 (53%)

Query:    49 ELLVASHKSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFL 108
             ++L    K V ++ TV+ DV  ++VG  E +E+ L E + +I  A++     +P +R  L
Sbjct:    62 DILTYDGKLV-VMLTVM-DVIFYIVGGMEENEVMLYECLRSIRDALELLFKYVPDKRTLL 119

Query:   109 DKYGKICLCLDEIVWKGLLENTEKDRIRRLVRLKPPNE 146
             + Y ++ + +DE +  G++  TE   I   V   P +E
Sbjct:   120 ENYDQLVIVVDETIDDGVILETEPALIAARVTKGPVSE 157


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.141   0.414    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      147       147   0.00091  103 3  11 22  0.44    31
                                                     30  0.50    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  582 (62 KB)
  Total size of DFA:  134 KB (2084 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.96u 0.15s 14.11t   Elapsed:  00:00:00
  Total cpu time:  13.96u 0.15s 14.11t   Elapsed:  00:00:00
  Start:  Fri May 10 15:28:04 2013   End:  Fri May 10 15:28:04 2013

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