BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032095
         (147 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3TJZ|C Chain C, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
           Complex
 pdb|3TJZ|F Chain F, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
           Complex
          Length = 153

 Score = 28.9 bits (63), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 21/91 (23%), Positives = 44/91 (48%)

Query: 52  VASHKSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKY 111
           +A  + + +VY    D+  +V+G    +EL L  V+  +  ++     K   +R  L+  
Sbjct: 59  IALLEGLTVVYKSSIDLYFYVIGSSYENELMLMTVLNCLFDSLSQMLRKNVEKRALLENM 118

Query: 112 GKICLCLDEIVWKGLLENTEKDRIRRLVRLK 142
             + L +DEIV  G++  ++  ++   V L+
Sbjct: 119 EGLFLAVDEIVDGGVILESDPQQVVHRVALR 149


>pdb|2HF6|A Chain A, Solution Structure Of Human Zeta-Cop
          Length = 149

 Score = 28.9 bits (63), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 20/83 (24%), Positives = 40/83 (48%)

Query: 60  IVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLD 119
           +VY    D+  +V+G    +EL L  V+  +  ++     K   +R  L+    + L +D
Sbjct: 67  VVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVD 126

Query: 120 EIVWKGLLENTEKDRIRRLVRLK 142
           EIV  G++  ++  ++   V L+
Sbjct: 127 EIVDGGVILESDPQQVVHRVALR 149


>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
          Length = 345

 Score = 26.9 bits (58), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 27/55 (49%)

Query: 41  NLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVK 95
            L+G +NE   VA   S  ++ T   D S++V   DE DE     V+ + T  VK
Sbjct: 100 TLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVK 154


>pdb|3I5G|A Chain A, Crystal Structure Of Rigor-Like Squid Myosin S1
 pdb|3I5H|A Chain A, The Crystal Structure Of Rigor Like Squid Myosin S1 In The
           Absence Of Nucleotide
 pdb|3I5I|A Chain A, The Crystal Structure Of Squid Myosin S1 In The Presence
           Of So4 2-
 pdb|3I5F|A Chain A, Crystal Structure Of Squid Mg.Adp Myosin S1
          Length = 839

 Score = 26.2 bits (56), Expect = 7.4,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 7/73 (9%)

Query: 61  VYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDE 120
           +Y  +   ++ V G D+ +E+ L +  F       D  G    E+L + K     L L E
Sbjct: 313 LYGFINQGTLTVDGIDDEEEMGLTDTAF-------DVLGFTDEEKLSMYKCTGCILHLGE 365

Query: 121 IVWKGLLENTEKD 133
           + WK   E  E D
Sbjct: 366 MKWKQRGEQAEAD 378


>pdb|4I43|A Chain A, Crystal Structure Of Prp8:aar2 Complex
          Length = 384

 Score = 25.8 bits (55), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%)

Query: 104 ERLFLDKYGKICLCLDEIVWKGLLENTEKDRIRRLVRLKPPNEF 147
           ER  +  Y KI    ++  W  L E  + D+IR++VR K  N+F
Sbjct: 98  ERQMMVSYPKID---EDDTWYNLTEFVQMDKIRKIVR-KDENQF 137


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.141    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,314,856
Number of Sequences: 62578
Number of extensions: 164763
Number of successful extensions: 336
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 331
Number of HSP's gapped (non-prelim): 17
length of query: 147
length of database: 14,973,337
effective HSP length: 90
effective length of query: 57
effective length of database: 9,341,317
effective search space: 532455069
effective search space used: 532455069
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)