BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032095
(147 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5NA06|COPZ3_ORYSJ Coatomer subunit zeta-3 OS=Oryza sativa subsp. japonica
GN=Os01g0838800 PE=2 SV=1
Length = 177
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%)
Query: 57 SVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICL 116
S ++VY + D+ FV G DE +EL LA V+ + A+ R L+ I L
Sbjct: 62 SYFVVYKFIQDLHFFVTGGDEENELILASVLQGFSEAIDYLLRNKVHRRAALENLDLIFL 121
Query: 117 CLDEIVWKGLLENTEKDRI 135
CLDE+V G++ T+ I
Sbjct: 122 CLDEVVDGGIVLETDAKAI 140
>sp|Q9MAX5|COPZ1_ORYSJ Coatomer subunit zeta-1 OS=Oryza sativa subsp. japonica GN=COPZ1
PE=2 SV=1
Length = 177
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 6/108 (5%)
Query: 30 WRSFLVKLGADNLKGVKNEELLVASHKSVY------IVYTVLGDVSIFVVGKDEYDELAL 83
W + KL + VK ++ + + +VY + D+ FV G +E +EL L
Sbjct: 29 WPTLSAKLAFEKSVFVKTQKATAGAEAEIVMFDGHIVVYKFIQDLHFFVTGGEEENELIL 88
Query: 84 AEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKGLLENTE 131
A V+ T AV +R L+ I LCLDEIV G++ TE
Sbjct: 89 ASVLQGFTDAVDIILRNNVDKRTALENLDLILLCLDEIVDGGIVLETE 136
>sp|Q54CA7|COPZB_DICDI Probable coatomer subunit zeta-B OS=Dictyostelium discoideum
GN=copZb PE=3 SV=1
Length = 178
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 7/96 (7%)
Query: 45 VKNEELLVASHKSVYIVYTVLGDVSIFVVGKD-EYDELALAEVIFAITSAVKDACGK--- 100
N EL + +K V + + DV IFVVG +ELAL +V+ + S K AC
Sbjct: 52 TSNCELEIIDNKVV--IGSKQSDVWIFVVGNSLNSNELALLDVLNTLISLFKKACATDES 109
Query: 101 -IPTERLFLDKYGKICLCLDEIVWKGLLENTEKDRI 135
+ T++ FL+ Y I L +DEIV G++ +++ I
Sbjct: 110 IMITKKTFLENYALIRLYIDEIVSDGIIFEVDEETI 145
>sp|Q6Z844|COPZ2_ORYSJ Coatomer subunit zeta-2 OS=Oryza sativa subsp. japonica GN=COPZ2
PE=2 SV=1
Length = 182
Score = 36.6 bits (83), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%)
Query: 60 IVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLD 119
+VY + D+ FV D+ +EL +A V+ + +V +R L+ I LC+D
Sbjct: 70 VVYKFVQDLHFFVTAGDDENELIIANVLQGFSDSVGLLLRGDVEKRTALENLDLILLCID 129
Query: 120 EIVWKGLLENTEKDRI 135
EIV G++ T+ + I
Sbjct: 130 EIVDGGIILETDANTI 145
>sp|A7A1P0|STE11_YEAS7 Serine/threonine-protein kinase STE11 OS=Saccharomyces cerevisiae
(strain YJM789) GN=STE11 PE=3 SV=1
Length = 717
Score = 34.3 bits (77), Expect = 0.27, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 18/21 (85%)
Query: 127 LENTEKDRIRRLVRLKPPNEF 147
++NTEKDRIR++ +PP+EF
Sbjct: 263 IDNTEKDRIRQIFNQRPPSEF 283
>sp|P23561|STE11_YEAST Serine/threonine-protein kinase STE11 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=STE11 PE=1 SV=3
Length = 717
Score = 34.3 bits (77), Expect = 0.27, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 18/21 (85%)
Query: 127 LENTEKDRIRRLVRLKPPNEF 147
++NTEKDRIR++ +PP+EF
Sbjct: 263 IDNTEKDRIRQIFNQRPPSEF 283
>sp|B5VNQ3|STE11_YEAS6 Serine/threonine-protein kinase STE11 OS=Saccharomyces cerevisiae
(strain AWRI1631) GN=STE11 PE=3 SV=2
Length = 717
Score = 34.3 bits (77), Expect = 0.28, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 18/21 (85%)
Query: 127 LENTEKDRIRRLVRLKPPNEF 147
++NTEKDRIR++ +PP+EF
Sbjct: 263 IDNTEKDRIRQIFNQRPPSEF 283
>sp|Q54HD4|COPZA_DICDI Probable coatomer subunit zeta-A OS=Dictyostelium discoideum
GN=copZa PE=3 SV=1
Length = 175
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 60 IVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIP-TERLFLDKYGKICLCL 118
+VY ++ I++VG +E+AL V+ + +++ ++L LD L L
Sbjct: 65 VVYKSFSNIIIYMVGDQNQNEIALLYVLNSFIDTLQNLFENSQINKKLILDGINYTLLTL 124
Query: 119 DEIVWKGLLENTEKDRIRRLVRLKPPN 145
DEI+ G++ ++ I V +K P+
Sbjct: 125 DEIIDGGIIMESDSAVIADRVGIKAPD 151
>sp|Q8H1F4|COPZ3_ARATH Coatomer subunit zeta-3 OS=Arabidopsis thaliana GN=At4g08520 PE=2
SV=1
Length = 181
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%)
Query: 56 KSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKIC 115
+S +VY D+ FV G + +EL L+ V+ AV + L+ I
Sbjct: 65 ESNIVVYKFAQDLHFFVTGGENENELVLSSVLQGFFDAVALLLRNNVEKMEALENLDLIF 124
Query: 116 LCLDEIVWKGLLENTEKDRIRRLVRLKPP 144
LCLDE+V +G++ T+ + I V ++
Sbjct: 125 LCLDEMVDQGMVLETDANVIAGKVAMQSA 153
>sp|Q84LG4|COPZ2_ARATH Coatomer subunit zeta-2 OS=Arabidopsis thaliana GN=At3g09800 PE=2
SV=1
Length = 179
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%)
Query: 60 IVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLD 119
IVY D+ FV G + +EL LA V+ AV + L+ I LCLD
Sbjct: 67 IVYKFAQDLHFFVTGGENENELILASVLQGFFDAVALLLRSNVEKMEALENLDLIFLCLD 126
Query: 120 EIVWKGLLENTEKDRIRRLVRLK 142
E+V +G++ T+ + I V ++
Sbjct: 127 EMVDQGVVLETDPNVIAGKVAMQ 149
>sp|P53600|COPZ_YEAST Coatomer subunit zeta OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RET3 PE=1 SV=1
Length = 189
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 41/87 (47%)
Query: 60 IVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLD 119
++Y D++I++V E +E+ L + AI A+ ++ + Y + L +D
Sbjct: 73 VLYKEYIDITIYLVASLEENEIVLQQGFSAIRGALDLILNSGMDKKNIQENYDMVLLAID 132
Query: 120 EIVWKGLLENTEKDRIRRLVRLKPPNE 146
E + G++ T+ + I V P NE
Sbjct: 133 ETIDNGVILETDSNTIASRVSKPPTNE 159
>sp|Q9P299|COPZ2_HUMAN Coatomer subunit zeta-2 OS=Homo sapiens GN=COPZ2 PE=2 SV=1
Length = 210
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 43/91 (47%)
Query: 52 VASHKSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKY 111
+A + IVY D+ ++VVG +EL L V+ + ++ K +R L+
Sbjct: 92 IAFFGGMTIVYKNSIDLFLYVVGSSYENELMLMSVLTCLFESLNHMLRKNVEKRWLLENM 151
Query: 112 GKICLCLDEIVWKGLLENTEKDRIRRLVRLK 142
L LDEIV G++ ++ ++ + V +
Sbjct: 152 DGAFLVLDEIVDGGVILESDPQQVIQKVNFR 182
>sp|Q8VZ37|AP3S_ARATH AP-3 complex subunit sigma OS=Arabidopsis thaliana GN=At3g50860
PE=2 SV=1
Length = 166
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 9/144 (6%)
Query: 1 MILAVLFANSEGNILVERF-NGVPAEERLHWRSFLVKLGADNLKGVKN----EELLVASH 55
MI AV+ N++G + +F + +P E++ + + + V N E L
Sbjct: 1 MIKAVMMMNTQGKPRLAKFYDYLPVEKQQELIRGVFSVLCSRPENVSNFLEIESLFGPDS 60
Query: 56 KSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKIC 115
+ VY Y L V +F +ELA+ ++I + + D C E + Y K+
Sbjct: 61 RLVYKHYATLYFVLVF---DGSENELAMLDLIQVLVETL-DKCFSNVCELDIVFNYSKMH 116
Query: 116 LCLDEIVWKGLLENTEKDRIRRLV 139
LDEIV+ G + T + + V
Sbjct: 117 AVLDEIVFGGQVLETSSAEVMKAV 140
>sp|Q9JHH9|COPZ2_MOUSE Coatomer subunit zeta-2 OS=Mus musculus GN=Copz2 PE=2 SV=1
Length = 205
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 39/83 (46%)
Query: 60 IVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLD 119
IVY D+ ++VVG +EL L V+ + ++ K +R L+ L LD
Sbjct: 95 IVYKSSIDIFLYVVGSSSENELMLMSVLACLFDSLSHILRKNVEKRWLLENMDGAFLVLD 154
Query: 120 EIVWKGLLENTEKDRIRRLVRLK 142
E V G++ ++ ++ + V +
Sbjct: 155 ETVDGGVILESDPQQVIQKVNFR 177
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.141 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,770,199
Number of Sequences: 539616
Number of extensions: 2132206
Number of successful extensions: 4323
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 4310
Number of HSP's gapped (non-prelim): 22
length of query: 147
length of database: 191,569,459
effective HSP length: 106
effective length of query: 41
effective length of database: 134,370,163
effective search space: 5509176683
effective search space used: 5509176683
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)