BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032100
         (147 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2IEW|A Chain A, Crystal Structure Of Inositol Phosphate Multikinase Ipk2
           From S. Cerevisiae
 pdb|2IEW|B Chain B, Crystal Structure Of Inositol Phosphate Multikinase Ipk2
           From S. Cerevisiae
 pdb|2IF8|A Chain A, Crystal Structure Of Inositol Phosphate Multikinase Ipk2
           In Complex With Adp And Mn2+ From S. Cerevisiae
 pdb|2IF8|B Chain B, Crystal Structure Of Inositol Phosphate Multikinase Ipk2
           In Complex With Adp And Mn2+ From S. Cerevisiae
          Length = 363

 Score = 28.1 bits (61), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 47/123 (38%), Gaps = 28/123 (22%)

Query: 14  HASSSNEGTVIVGLKILAQISQSRSNVVVKPAL---------VSTRSDSRRRPSASGDQY 64
           H ++ ++GT+  G  +L          + KPA          +  R  SRR+ SA GD  
Sbjct: 12  HKAAGHDGTLTDGDGLL----------IFKPAFPQELEFYKAIQVRDVSRRKSSADGDAP 61

Query: 65  YCYLKSCYL--CNKNLSLDKEVYMYRGDQGFCSIECR--DRQIFLDEMKELEASRKQFLK 120
            C     YL   N+   +++      GD     I+ R  D    LD +       KQ+L 
Sbjct: 62  LCSWMPTYLGVLNEGAKIEQS-----GDAALLKIDERLSDSTDNLDSIPVKSEKSKQYLV 116

Query: 121 SNN 123
             N
Sbjct: 117 LEN 119


>pdb|3FO5|A Chain A, Human Start Domain Of Acyl-Coenzyme A Thioesterase 11
           (Acot11)
 pdb|3FO5|B Chain B, Human Start Domain Of Acyl-Coenzyme A Thioesterase 11
           (Acot11)
          Length = 258

 Score = 26.2 bits (56), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 5/50 (10%)

Query: 53  SRRRPSASGDQYYCYLKSCYLCNKNLSLDKEVYMYRGDQGFCSIECRDRQ 102
           SRR+P  +GD Y   L+S       L   +E   YR  +  CS  C  R+
Sbjct: 157 SRRKPCDNGDPYVIALRSV-----TLPTHRETPEYRRGETLCSGFCLWRE 201


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.132    0.382 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,088,602
Number of Sequences: 62578
Number of extensions: 144576
Number of successful extensions: 231
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 230
Number of HSP's gapped (non-prelim): 5
length of query: 147
length of database: 14,973,337
effective HSP length: 90
effective length of query: 57
effective length of database: 9,341,317
effective search space: 532455069
effective search space used: 532455069
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)