BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032100
         (147 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|B6EUA9|PR40A_ARATH Pre-mRNA-processing protein 40A OS=Arabidopsis thaliana GN=PRP40A
           PE=1 SV=1
          Length = 958

 Score = 31.2 bits (69), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 11/93 (11%)

Query: 54  RRRPSASGDQYYCYLKSCYLCNKNLSLDKEVYMYRGDQGFCSIE-CRDRQIFLDE-MKEL 111
           RRR   + +++   L+ C   + +L   K + ++  DQ F +++  RDR+   D  + EL
Sbjct: 468 RRRQKKAREEFVKMLEECEELSSSLKWSKAMSLFENDQRFKAVDRPRDREDLFDNYIVEL 527

Query: 112 EASRKQFLKSNNRHCNIGADRRHHRGETRVFLE 144
           E  RK+  K+   H       R +  + R FLE
Sbjct: 528 E--RKEREKAAEEH-------RQYMADYRKFLE 551


>sp|A2RAF3|DCL1_ASPNC Dicer-like protein 1 OS=Aspergillus niger (strain CBS 513.88 / FGSC
            A1513) GN=dcl1 PE=3 SV=2
          Length = 1525

 Score = 30.0 bits (66), Expect = 4.5,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 3/28 (10%)

Query: 69   KSCYLCNKNL---SLDKEVYMYRGDQGF 93
            + C +CNKNL   ++DKE+Y Y   +GF
Sbjct: 1114 RMCLICNKNLFNAAVDKEIYKYIRSRGF 1141


>sp|Q2U6C4|DCL1_ASPOR Dicer-like protein 1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB
            40) GN=dcl1 PE=3 SV=2
          Length = 1523

 Score = 29.3 bits (64), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 3/26 (11%)

Query: 71   CYLCNKNL---SLDKEVYMYRGDQGF 93
            C +CNKNL   +L KE+Y Y   +GF
Sbjct: 1114 CLICNKNLFNTALKKELYQYTRSRGF 1139


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.132    0.382 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,574,577
Number of Sequences: 539616
Number of extensions: 1880653
Number of successful extensions: 4098
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 4093
Number of HSP's gapped (non-prelim): 8
length of query: 147
length of database: 191,569,459
effective HSP length: 106
effective length of query: 41
effective length of database: 134,370,163
effective search space: 5509176683
effective search space used: 5509176683
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)