Query 032100
Match_columns 147
No_of_seqs 116 out of 232
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 15:26:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032100.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032100hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2das_A Zinc finger MYM-type pr 90.1 0.19 6.5E-06 34.4 2.6 35 66-100 18-53 (62)
2 2iyb_E Testin, TESS, TES; LIM 89.9 0.16 5.4E-06 32.1 2.0 32 65-100 31-62 (65)
3 2l8e_A Polyhomeotic-like prote 89.2 0.1 3.4E-06 33.7 0.7 30 68-101 18-47 (49)
4 1lv3_A Hypothetical protein YA 81.1 0.63 2.1E-05 32.0 1.6 29 69-101 10-38 (68)
5 1jjd_A Metallothionein, SMTA; 79.8 0.96 3.3E-05 29.9 2.1 32 68-101 7-38 (55)
6 2xqn_T Testin, TESS; metal-bin 69.1 3 0.0001 28.9 2.5 28 70-99 95-122 (126)
7 3j21_V 50S ribosomal protein L 67.4 6.5 0.00022 26.7 3.8 34 69-102 5-41 (66)
8 1wig_A KIAA1808 protein; LIM d 67.4 2.8 9.7E-05 26.8 2.0 32 65-100 30-61 (73)
9 1x61_A Thyroid receptor intera 64.5 7 0.00024 24.3 3.4 32 65-101 32-63 (72)
10 2cur_A Skeletal muscle LIM-pro 63.5 6.9 0.00024 24.2 3.2 28 70-100 33-60 (69)
11 4a17_T RPL24, 60S ribosomal pr 60.7 6.2 0.00021 30.9 3.1 34 69-102 6-42 (158)
12 1vq8_U 50S ribosomal protein L 58.6 11 0.00038 25.5 3.7 33 69-101 4-39 (66)
13 3izc_Z 60S ribosomal protein R 58.4 7.7 0.00026 30.3 3.3 34 69-102 4-40 (155)
14 2d8x_A Protein pinch; LIM doma 56.5 5.3 0.00018 24.9 1.7 31 65-100 30-60 (70)
15 2zkr_u 60S ribosomal protein L 56.5 11 0.00037 29.5 3.8 33 69-101 4-39 (157)
16 3iz5_Z 60S ribosomal protein L 56.4 8.5 0.00029 30.3 3.2 34 69-102 6-42 (162)
17 2cu8_A Cysteine-rich protein 2 56.3 6.8 0.00023 24.8 2.2 29 70-100 38-66 (76)
18 1v6g_A Actin binding LIM prote 56.1 6.1 0.00021 25.3 2.0 31 65-99 40-70 (81)
19 3f6q_B LIM and senescent cell 54.3 4.1 0.00014 25.0 0.9 26 70-98 41-66 (72)
20 2l3k_A Rhombotin-2, linker, LI 53.9 13 0.00044 25.9 3.6 31 65-99 35-65 (123)
21 2jtn_A LIM domain-binding prot 53.9 9 0.00031 28.3 2.9 29 70-99 149-177 (182)
22 1iml_A CRIP, cysteine rich int 52.6 11 0.00036 23.9 2.7 29 70-100 29-57 (76)
23 1nyp_A Pinch protein; LIM doma 52.3 6.7 0.00023 24.1 1.7 28 65-96 30-57 (66)
24 1x4l_A Skeletal muscle LIM-pro 52.1 7.7 0.00026 24.2 2.0 26 70-98 37-62 (72)
25 2d8z_A Four and A half LIM dom 50.6 8.5 0.00029 23.8 2.0 27 65-95 30-56 (70)
26 1x6a_A LIMK-2, LIM domain kina 50.4 9.3 0.00032 24.3 2.2 33 65-100 40-72 (81)
27 1x4k_A Skeletal muscle LIM-pro 49.7 8.5 0.00029 23.8 1.9 27 70-99 35-61 (72)
28 1x62_A C-terminal LIM domain p 49.2 6 0.00021 25.4 1.1 27 70-99 43-69 (79)
29 2xjy_A Rhombotin-2; oncoprotei 48.9 9.6 0.00033 26.3 2.2 30 65-96 28-57 (131)
30 2co8_A NEDD9 interacting prote 47.7 8.5 0.00029 25.0 1.7 26 70-96 44-70 (82)
31 2cuq_A Four and A half LIM dom 47.5 11 0.00038 23.9 2.2 27 70-99 43-69 (80)
32 1x68_A FHL5 protein; four-and- 46.5 11 0.00037 23.9 2.0 24 70-95 37-60 (76)
33 1x63_A Skeletal muscle LIM-pro 45.7 11 0.00037 24.0 1.9 27 70-99 45-71 (82)
34 2ehe_A Four and A half LIM dom 45.4 12 0.00039 23.9 2.0 25 70-96 45-69 (82)
35 1x3h_A Leupaxin; paxillin fami 45.3 11 0.00039 23.8 2.0 24 70-95 43-66 (80)
36 1m3v_A FLIN4, fusion of the LI 44.9 8.8 0.0003 26.7 1.5 30 65-96 31-60 (122)
37 1g47_A Pinch protein; LIM doma 43.7 7.4 0.00025 24.4 0.9 24 70-95 41-64 (77)
38 2dj7_A Actin-binding LIM prote 42.6 11 0.00037 24.6 1.6 25 70-97 44-68 (80)
39 2rgt_A Fusion of LIM/homeobox 42.4 12 0.00042 27.3 2.0 32 70-102 95-126 (169)
40 2dar_A PDZ and LIM domain prot 42.0 14 0.00049 24.1 2.1 28 70-100 53-80 (90)
41 1wyh_A SLIM 2, skeletal muscle 41.6 14 0.00049 22.7 2.0 27 70-99 35-61 (72)
42 2egq_A FHL1 protein; LIM domai 40.8 10 0.00035 23.9 1.2 26 70-98 48-73 (77)
43 1j2o_A FLIN2, fusion of rhombo 40.3 12 0.0004 25.8 1.5 27 70-96 32-58 (114)
44 4fc8_A Transcription protein R 40.2 12 0.0004 30.6 1.7 37 69-105 71-122 (219)
45 2l4z_A DNA endonuclease RBBP8, 39.6 9 0.00031 27.2 0.9 27 70-96 90-116 (123)
46 1x64_A Alpha-actinin-2 associa 39.6 13 0.00046 24.2 1.7 27 70-99 53-79 (89)
47 1a7i_A QCRP2 (LIM1); LIM domai 38.7 11 0.00039 24.0 1.2 27 70-99 36-62 (81)
48 2d8y_A Eplin protein; LIM doma 35.5 14 0.00049 24.2 1.3 24 70-95 44-67 (91)
49 2xjy_A Rhombotin-2; oncoprotei 34.1 23 0.00078 24.3 2.2 26 70-96 96-121 (131)
50 1wg2_A Zinc finger (AN1-like) 33.8 28 0.00097 23.5 2.6 30 65-96 12-41 (64)
51 2jw6_A Deformed epidermal auto 33.0 17 0.00057 21.9 1.2 34 66-102 7-40 (52)
52 2cup_A Skeletal muscle LIM-pro 30.6 23 0.00079 23.2 1.7 25 70-96 35-59 (101)
53 2cor_A Pinch protein; LIM doma 30.0 26 0.00088 22.5 1.8 26 65-95 40-65 (79)
54 2dlo_A Thyroid receptor-intera 29.8 27 0.00091 22.2 1.9 24 70-95 43-67 (81)
55 1wfh_A Zinc finger (AN1-like) 26.5 46 0.0016 22.4 2.6 30 65-96 12-41 (64)
56 1wfp_A Zinc finger (AN1-like) 24.0 43 0.0015 23.2 2.1 30 65-96 22-51 (74)
57 1wfl_A Zinc finger protein 216 23.4 90 0.0031 21.6 3.7 30 65-96 22-51 (74)
58 2odd_A Protein CBFA2T1; MYND z 22.6 35 0.0012 21.4 1.4 33 68-103 17-49 (64)
59 1b8t_A Protein (CRP1); LIM dom 22.2 42 0.0014 24.8 2.0 27 70-99 144-170 (192)
60 1rut_X Flinc4, fusion protein 22.2 47 0.0016 24.6 2.2 30 70-101 99-128 (188)
61 3u52_A Phenol hydroxylase comp 20.0 49 0.0017 29.6 2.2 35 67-101 395-439 (511)
No 1
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=90.05 E-value=0.19 Score=34.40 Aligned_cols=35 Identities=29% Similarity=0.553 Sum_probs=30.0
Q ss_pred hhhhccccccCCCCCCCceEEEcCC-ccccChhhHH
Q 032100 66 CYLKSCYLCNKNLSLDKEVYMYRGD-QGFCSIECRD 100 (147)
Q Consensus 66 ~FL~~C~lCkK~L~~~kDIyMYRGe-~AFCS~ECR~ 100 (147)
.+-..|..|+|.|..|+--|-..|+ .-|||..|=.
T Consensus 18 ~~~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~ 53 (62)
T 2das_A 18 PAKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLS 53 (62)
T ss_dssp CSSCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHH
T ss_pred ccccChhhccchhhcCceeeeecCchhheechHHHc
Confidence 3567899999999999999998886 4699999954
No 2
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=89.90 E-value=0.16 Score=32.07 Aligned_cols=32 Identities=34% Similarity=0.804 Sum_probs=24.2
Q ss_pred hhhhhccccccCCCCCCCceEEEcCCccccChhhHH
Q 032100 65 YCYLKSCYLCNKNLSLDKEVYMYRGDQGFCSIECRD 100 (147)
Q Consensus 65 ~~FL~~C~lCkK~L~~~kDIyMYRGe~AFCS~ECR~ 100 (147)
..| .|..|+++|. +. .|+-++.++||+.+|-.
T Consensus 31 ~CF--~C~~C~~~L~-~~-~f~~~~g~~yC~~~C~~ 62 (65)
T 2iyb_E 31 ECF--LCSCCSKCLI-GQ-KFMPVEGMVFCSVECKK 62 (65)
T ss_dssp TTS--BCTTTCCBCT-TS-CCEEETTEEESSHHHHH
T ss_pred CCE--ECCCCCCcCC-CC-ceEEECCEEecCHHHhh
Confidence 445 6888999997 33 46667779999999953
No 3
>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}
Probab=89.17 E-value=0.1 Score=33.73 Aligned_cols=30 Identities=37% Similarity=0.925 Sum_probs=24.5
Q ss_pred hhccccccCCCCCCCceEEEcCCccccChhhHHH
Q 032100 68 LKSCYLCNKNLSLDKEVYMYRGDQGFCSIECRDR 101 (147)
Q Consensus 68 L~~C~lCkK~L~~~kDIyMYRGe~AFCS~ECR~~ 101 (147)
+..|-.|.+.|.+.. .+..+-|||..||..
T Consensus 18 ~~~C~~CG~~i~~~~----~~r~krFCS~sCR~~ 47 (49)
T 2l8e_A 18 LLKCEYCGKYAPAEQ----FRGSKRFCSMTCAKR 47 (49)
T ss_dssp EEECTTTCCEEEGGG----CTTTSSSCSHHHHHH
T ss_pred CCcChhccCcccccc----CCCCCccCCHHHHhh
Confidence 457999999998544 377889999999975
No 4
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=81.07 E-value=0.63 Score=32.02 Aligned_cols=29 Identities=24% Similarity=0.458 Sum_probs=21.0
Q ss_pred hccccccCCCCCCCceEEEcCCccccChhhHHH
Q 032100 69 KSCYLCNKNLSLDKEVYMYRGDQGFCSIECRDR 101 (147)
Q Consensus 69 ~~C~lCkK~L~~~kDIyMYRGe~AFCS~ECR~~ 101 (147)
..|--|+|+..-.++ --..+|||+.|+.-
T Consensus 10 ~~CP~Cgkp~~W~~~----~~~rPFCSeRCr~i 38 (68)
T 1lv3_A 10 VNCPTCGKTVVWGEI----SPFRPFCSKRCQLI 38 (68)
T ss_dssp EECTTTCCEEECSSS----SSCCSSSSHHHHHH
T ss_pred CcCCCCCCccccccc----CCCCcccCHHHHhh
Confidence 579999999862222 23579999999863
No 5
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=79.78 E-value=0.96 Score=29.92 Aligned_cols=32 Identities=25% Similarity=0.436 Sum_probs=23.4
Q ss_pred hhccccccCCCCCCCceEEEcCCccccChhhHHH
Q 032100 68 LKSCYLCNKNLSLDKEVYMYRGDQGFCSIECRDR 101 (147)
Q Consensus 68 L~~C~lCkK~L~~~kDIyMYRGe~AFCS~ECR~~ 101 (147)
.-.|..|.=-+. .++.++ ++.+.|||++|-..
T Consensus 7 kCaC~~C~c~Vs-~~eai~-~dGK~YCSe~Ca~g 38 (55)
T 1jjd_A 7 KCACEPCLCNVD-PSKAID-RNGLYYCSEACADG 38 (55)
T ss_dssp CCSSTTCCCCBC-TTTSEE-SSSCEESSHHHHHT
T ss_pred eecCCCCeeEec-hHHhhh-cCCeEEehHHHHcc
Confidence 346788888777 456655 55599999999764
No 6
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=69.10 E-value=3 Score=28.86 Aligned_cols=28 Identities=36% Similarity=0.736 Sum_probs=21.7
Q ss_pred ccccccCCCCCCCceEEEcCCccccChhhH
Q 032100 70 SCYLCNKNLSLDKEVYMYRGDQGFCSIECR 99 (147)
Q Consensus 70 ~C~lCkK~L~~~kDIyMYRGe~AFCS~ECR 99 (147)
.|..|++.|. .+.|.-.+.+.||..+|-
T Consensus 95 ~C~~C~~~l~--~~~f~~~~~~~yC~~~~~ 122 (126)
T 2xqn_T 95 LCSCCSKCLI--GQKFMPVEGMVFCSVECK 122 (126)
T ss_dssp BCTTTCCBCT--TSEEEEETTEEESSHHHH
T ss_pred CcCCCCCccC--CCeeEeECCEEcchHHhh
Confidence 5778889998 455666778999998885
No 7
>3j21_V 50S ribosomal protein L24E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=67.42 E-value=6.5 Score=26.67 Aligned_cols=34 Identities=26% Similarity=0.500 Sum_probs=28.0
Q ss_pred hccccccCCCCCCCceEEEcCCc---cccChhhHHHH
Q 032100 69 KSCYLCNKNLSLDKEVYMYRGDQ---GFCSIECRDRQ 102 (147)
Q Consensus 69 ~~C~lCkK~L~~~kDIyMYRGe~---AFCS~ECR~~q 102 (147)
..|++|..+|.||.-+-.-+.|. -|||.-|....
T Consensus 5 ~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~FcssKC~k~f 41 (66)
T 3j21_V 5 NVCSYCGKPFEPGTGKMYVRNDGRVLFFCSRKCERYY 41 (66)
T ss_dssp CBCTTTCSBCCTTCCEEEECSSSCEEEESSHHHHHHH
T ss_pred eEecCcCCcccCCCCeEEEecCCcEEEEECHHHHHHH
Confidence 57999999999998776667664 49999998774
No 8
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=67.36 E-value=2.8 Score=26.83 Aligned_cols=32 Identities=22% Similarity=0.527 Sum_probs=22.5
Q ss_pred hhhhhccccccCCCCCCCceEEEcCCccccChhhHH
Q 032100 65 YCYLKSCYLCNKNLSLDKEVYMYRGDQGFCSIECRD 100 (147)
Q Consensus 65 ~~FL~~C~lCkK~L~~~kDIyMYRGe~AFCS~ECR~ 100 (147)
..| .|..|+++|..+ +.|..++.+.||. +|-.
T Consensus 30 ~CF--~C~~C~~~L~~~-~~f~~~~~~~yC~-~C~~ 61 (73)
T 1wig_A 30 SCA--LCVRCGQMFAEG-EEMYLQGSSIWHP-ACRQ 61 (73)
T ss_dssp TTS--CCSSSCCCCCSS-CCCEEETTEEECT-THHH
T ss_pred CcC--EeCCCCCCCCCC-CeeEeeCCEEECh-HHCh
Confidence 455 588899999854 4555567799996 4643
No 9
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=64.48 E-value=7 Score=24.33 Aligned_cols=32 Identities=19% Similarity=0.607 Sum_probs=21.9
Q ss_pred hhhhhccccccCCCCCCCceEEEcCCccccChhhHHH
Q 032100 65 YCYLKSCYLCNKNLSLDKEVYMYRGDQGFCSIECRDR 101 (147)
Q Consensus 65 ~~FL~~C~lCkK~L~~~kDIyMYRGe~AFCS~ECR~~ 101 (147)
..| .|..|++.|. .+.|.-++.+.||. .|-.+
T Consensus 32 ~CF--~C~~C~~~L~--~~~~~~~~~~~yC~-~cy~~ 63 (72)
T 1x61_A 32 GCF--VCSTCRAQLR--GQHFYAVERRAYCE-GCYVA 63 (72)
T ss_dssp TTC--BCSSSCCBCT--TSCEEESSSCEEEH-HHHHH
T ss_pred cCC--cccccCCcCC--cCcCEeeCCeEECH-HHHHH
Confidence 345 5788999995 44566677799994 45433
No 10
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=63.49 E-value=6.9 Score=24.23 Aligned_cols=28 Identities=29% Similarity=0.758 Sum_probs=20.5
Q ss_pred ccccccCCCCCCCceEEEcCCccccChhhHH
Q 032100 70 SCYLCNKNLSLDKEVYMYRGDQGFCSIECRD 100 (147)
Q Consensus 70 ~C~lCkK~L~~~kDIyMYRGe~AFCS~ECR~ 100 (147)
.|..|++.|. .+.|.-+..+.|| ..|-.
T Consensus 33 ~C~~C~~~L~--~~~~~~~~~~~yC-~~cy~ 60 (69)
T 2cur_A 33 VCVTCSKKLA--GQRFTAVEDQYYC-VDCYK 60 (69)
T ss_dssp BCTTTCCBCT--TSCEEECSSCEEE-HHHHH
T ss_pred EECCCCCCCC--CCccEeECCEEEC-HHHhH
Confidence 5788999998 3456667789999 45543
No 11
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_T 4a1c_T 4a1e_T
Probab=60.66 E-value=6.2 Score=30.94 Aligned_cols=34 Identities=12% Similarity=0.214 Sum_probs=28.6
Q ss_pred hccccccCCCCCCCceEEEcCCc---cccChhhHHHH
Q 032100 69 KSCYLCNKNLSLDKEVYMYRGDQ---GFCSIECRDRQ 102 (147)
Q Consensus 69 ~~C~lCkK~L~~~kDIyMYRGe~---AFCS~ECR~~q 102 (147)
..|++|..+|.||.-+-.-+.|. -|||.-|....
T Consensus 6 ~~CsFcg~~IyPG~G~~fVr~Dgkvf~FcssKC~k~f 42 (158)
T 4a17_T 6 GTCSFCEYRIYPGRGQRFIAKDGRGFFFLTKKAKCLS 42 (158)
T ss_dssp EECTTTCCEECTTCCEEEECTTSCEEEESCHHHHHHH
T ss_pred EEecCcCCcccCCCCeEEEeeCCceEEEEcHHHHHHH
Confidence 47999999999998777777775 49999999874
No 12
>1vq8_U 50S ribosomal protein L24E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.39.1.6 PDB: 1giy_R 1jj2_T 1k73_V* 1k8a_V* 1k9m_V* 1kc8_V* 1kd1_V* 1kqs_T* 1m1k_V* 1m90_V* 1ml5_r* 1n8r_V* 1nji_V* 1q7y_V* 1q81_V* 1q82_V* 1q86_V* 1qvf_T 1qvg_T 1s72_U* ...
Probab=58.58 E-value=11 Score=25.48 Aligned_cols=33 Identities=21% Similarity=0.632 Sum_probs=27.1
Q ss_pred hccccccCCCCCCCceEEEcCCc---cccChhhHHH
Q 032100 69 KSCYLCNKNLSLDKEVYMYRGDQ---GFCSIECRDR 101 (147)
Q Consensus 69 ~~C~lCkK~L~~~kDIyMYRGe~---AFCS~ECR~~ 101 (147)
..|+.|..+|.||.-+-.-+.|. -|||.-|...
T Consensus 4 ~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~FcssKc~k~ 39 (66)
T 1vq8_U 4 RECDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENN 39 (66)
T ss_dssp CBCTTTCCBCCSSCCEEEECTTSCEEEESCHHHHHH
T ss_pred eEecCcCCcccCCCceEEEeeCCcEEEEECHHHHHH
Confidence 57999999999998766556664 4999999887
No 13
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z 3o58_V 3o5h_V 3u5e_W 3u5i_W 4b6a_W 1s1i_S 2x7n_D
Probab=58.43 E-value=7.7 Score=30.28 Aligned_cols=34 Identities=12% Similarity=0.135 Sum_probs=28.0
Q ss_pred hccccccCCCCCCCceEEEcCCc---cccChhhHHHH
Q 032100 69 KSCYLCNKNLSLDKEVYMYRGDQ---GFCSIECRDRQ 102 (147)
Q Consensus 69 ~~C~lCkK~L~~~kDIyMYRGe~---AFCS~ECR~~q 102 (147)
..|++|..+|.||.-+-.-+.|. -|||.-|....
T Consensus 4 ~~CsFcg~~IyPG~G~~fVr~Dgkvf~FcssKC~k~f 40 (155)
T 3izc_Z 4 EIDSFSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLF 40 (155)
T ss_dssp EECTTTCSEECTTCCEEEECTTCCEEEESSHHHHHHH
T ss_pred eEecCcCCcccCCCCeEEEecCCCEEEEEcHHHHHHH
Confidence 46999999999998777667774 49999997763
No 14
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.53 E-value=5.3 Score=24.86 Aligned_cols=31 Identities=23% Similarity=0.692 Sum_probs=22.1
Q ss_pred hhhhhccccccCCCCCCCceEEEcCCccccChhhHH
Q 032100 65 YCYLKSCYLCNKNLSLDKEVYMYRGDQGFCSIECRD 100 (147)
Q Consensus 65 ~~FL~~C~lCkK~L~~~kDIyMYRGe~AFCS~ECR~ 100 (147)
..| .|..|++.|..+ .|..+..+.||. .|-.
T Consensus 30 ~CF--~C~~C~~~L~~~--~f~~~~g~~yC~-~c~~ 60 (70)
T 2d8x_A 30 ECF--RCDLCQEVLADI--GFVKNAGRHLCR-PCHN 60 (70)
T ss_dssp TTS--BCSSSCCBCSSS--CCEEETTEEECH-HHHH
T ss_pred cCC--EeCCCCCcCCCC--ccEeECCeEECH-HHhh
Confidence 445 588899999954 466677899995 4543
No 15
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=56.48 E-value=11 Score=29.49 Aligned_cols=33 Identities=15% Similarity=0.275 Sum_probs=27.5
Q ss_pred hccccccCCCCCCCceEEEcCCc---cccChhhHHH
Q 032100 69 KSCYLCNKNLSLDKEVYMYRGDQ---GFCSIECRDR 101 (147)
Q Consensus 69 ~~C~lCkK~L~~~kDIyMYRGe~---AFCS~ECR~~ 101 (147)
..|++|..+|.||.-+-.-+.|. -|||.-|...
T Consensus 4 ~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~FcssKC~k~ 39 (157)
T 2zkr_u 4 ELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESA 39 (157)
T ss_dssp CBCTTTCCBCCTTCCEEEECTTSCEEEESSHHHHHH
T ss_pred eeecCcCCcccCCCceEEEeeCCcEEEEecHHHHHH
Confidence 57999999999998776667664 4999999876
No 16
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Z
Probab=56.42 E-value=8.5 Score=30.29 Aligned_cols=34 Identities=18% Similarity=0.392 Sum_probs=27.7
Q ss_pred hccccccCCCCCCCceEEEcCCc---cccChhhHHHH
Q 032100 69 KSCYLCNKNLSLDKEVYMYRGDQ---GFCSIECRDRQ 102 (147)
Q Consensus 69 ~~C~lCkK~L~~~kDIyMYRGe~---AFCS~ECR~~q 102 (147)
..|++|..+|.||.-+-.-+.|- -|||.-|....
T Consensus 6 e~CsFcG~~IyPG~G~~fVr~Dgkvf~FcssKC~k~f 42 (162)
T 3iz5_Z 6 ELCRFSGQKIYPGKGIRFIRADSQVFLFANSKCKRYF 42 (162)
T ss_dssp EECTTTCSEECSSCSEEEECTTSCEEEECSHHHHHHH
T ss_pred EEecCcCCcccCCCCeEEEecCCCEEEEECHHHHHHH
Confidence 46999999999998776667664 49999997653
No 17
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.31 E-value=6.8 Score=24.80 Aligned_cols=29 Identities=24% Similarity=0.485 Sum_probs=20.8
Q ss_pred ccccccCCCCCCCceEEEcCCccccChhhHH
Q 032100 70 SCYLCNKNLSLDKEVYMYRGDQGFCSIECRD 100 (147)
Q Consensus 70 ~C~lCkK~L~~~kDIyMYRGe~AFCS~ECR~ 100 (147)
.|..|++.|.. ..|.-+..+.||...|-.
T Consensus 38 ~C~~C~~~L~~--~~~~~~~g~~yC~~~cy~ 66 (76)
T 2cu8_A 38 KCERCSKTLTP--GGHAEHDGKPFCHKPCYA 66 (76)
T ss_dssp BCSSSCCBCCT--TSCEEETTEEECTTTHHH
T ss_pred CCCCCCCccCC--CceEeECCEEecchHHHH
Confidence 57889999983 346667779999745543
No 18
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.14 E-value=6.1 Score=25.32 Aligned_cols=31 Identities=19% Similarity=0.739 Sum_probs=21.9
Q ss_pred hhhhhccccccCCCCCCCceEEEcCCccccChhhH
Q 032100 65 YCYLKSCYLCNKNLSLDKEVYMYRGDQGFCSIECR 99 (147)
Q Consensus 65 ~~FL~~C~lCkK~L~~~kDIyMYRGe~AFCS~ECR 99 (147)
..| .|..|++.|.. .+.|...|...||. .|-
T Consensus 40 ~CF--~C~~C~~~L~~-~~~~~~~~~~~~C~-~C~ 70 (81)
T 1v6g_A 40 DCF--VCAVCRLPFPP-GDRVTFNGKECMCQ-KCS 70 (81)
T ss_dssp TTS--SCSSSCCCCCS-SSCEEEETTEEEEH-HHH
T ss_pred cCC--ccccCCCCCCC-CCEEEeCCCCEECh-hhh
Confidence 455 57889999984 56677777667884 453
No 19
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=54.31 E-value=4.1 Score=25.00 Aligned_cols=26 Identities=12% Similarity=0.405 Sum_probs=19.3
Q ss_pred ccccccCCCCCCCceEEEcCCccccChhh
Q 032100 70 SCYLCNKNLSLDKEVYMYRGDQGFCSIEC 98 (147)
Q Consensus 70 ~C~lCkK~L~~~kDIyMYRGe~AFCS~EC 98 (147)
.|..|++.|..+ .|.-++.+.||. .|
T Consensus 41 ~C~~C~~~L~~~--~~~~~~g~~yC~-~~ 66 (72)
T 3f6q_B 41 VCAQCFQQFPEG--LFYEFEGRKYCE-HD 66 (72)
T ss_dssp SCTTTCCCCGGG--CCEEETTEEECH-HH
T ss_pred cccCCCCCCCCC--CeEeECCeEeCH-HH
Confidence 478899999854 466677799994 44
No 20
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=53.95 E-value=13 Score=25.90 Aligned_cols=31 Identities=23% Similarity=0.610 Sum_probs=21.6
Q ss_pred hhhhhccccccCCCCCCCceEEEcCCccccChhhH
Q 032100 65 YCYLKSCYLCNKNLSLDKEVYMYRGDQGFCSIECR 99 (147)
Q Consensus 65 ~~FL~~C~lCkK~L~~~kDIyMYRGe~AFCS~ECR 99 (147)
.+| .|..|++.|..+. .|.-+..+.||. .|-
T Consensus 35 ~CF--~C~~C~~~L~~g~-~f~~~~g~~yC~-~cy 65 (123)
T 2l3k_A 35 ECF--KCAACQKHFSVGD-RYLLINSDIVCE-QDI 65 (123)
T ss_dssp TTC--BCTTTCCBCCTTC-EEEECSSSEEEG-GGH
T ss_pred ccC--ccccCCCCCCCCC-cEEeeCCEEEcH-HHh
Confidence 456 5888999996554 455567799994 454
No 21
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=53.94 E-value=9 Score=28.34 Aligned_cols=29 Identities=21% Similarity=0.576 Sum_probs=19.8
Q ss_pred ccccccCCCCCCCceEEEcCCccccChhhH
Q 032100 70 SCYLCNKNLSLDKEVYMYRGDQGFCSIECR 99 (147)
Q Consensus 70 ~C~lCkK~L~~~kDIyMYRGe~AFCS~ECR 99 (147)
.|..|++.|..|...|+-...+.|| ..|-
T Consensus 149 ~C~~C~~~L~~g~~f~~~~~g~~yC-~~cy 177 (182)
T 2jtn_A 149 ACVVCKRQLATGDEFYLMEDSRLVC-KADY 177 (182)
T ss_dssp CCTTTCCCCCTTCEEEECTTSCEEC-HHHH
T ss_pred cCCCCCCCCCCCCceEEccCCEEEC-HHHH
Confidence 5777888888665556656668888 4443
No 22
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=52.57 E-value=11 Score=23.87 Aligned_cols=29 Identities=21% Similarity=0.481 Sum_probs=20.7
Q ss_pred ccccccCCCCCCCceEEEcCCccccChhhHH
Q 032100 70 SCYLCNKNLSLDKEVYMYRGDQGFCSIECRD 100 (147)
Q Consensus 70 ~C~lCkK~L~~~kDIyMYRGe~AFCS~ECR~ 100 (147)
.|..|++.|..+ .|.-+..+.||...|-.
T Consensus 29 ~C~~C~~~L~~~--~~~~~~g~~yC~~~cy~ 57 (76)
T 1iml_A 29 KCEKCGKTLTSG--GHAEHEGKPYCNHPCYS 57 (76)
T ss_dssp BCTTTCCBCCTT--TEEEETTEEEETTTHHH
T ss_pred CccccCccCCCC--ceECcCCeEeeCHHHHH
Confidence 578899999954 35557779999644543
No 23
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=52.34 E-value=6.7 Score=24.07 Aligned_cols=28 Identities=18% Similarity=0.407 Sum_probs=20.1
Q ss_pred hhhhhccccccCCCCCCCceEEEcCCccccCh
Q 032100 65 YCYLKSCYLCNKNLSLDKEVYMYRGDQGFCSI 96 (147)
Q Consensus 65 ~~FL~~C~lCkK~L~~~kDIyMYRGe~AFCS~ 96 (147)
..| .|..|++.|. + +.|..+..+.||..
T Consensus 30 ~CF--~C~~C~~~L~-~-~~~~~~~g~~yC~~ 57 (66)
T 1nyp_A 30 EHF--VCAKCEKPFL-G-HRHYERKGLAYCET 57 (66)
T ss_dssp TTC--BCTTTCCBCS-S-SCCEEETTEEECHH
T ss_pred CcC--EECCCCCCCC-C-CceEeECCcEECHH
Confidence 455 5788999998 3 45666777999953
No 24
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.08 E-value=7.7 Score=24.19 Aligned_cols=26 Identities=23% Similarity=0.695 Sum_probs=19.4
Q ss_pred ccccccCCCCCCCceEEEcCCccccChhh
Q 032100 70 SCYLCNKNLSLDKEVYMYRGDQGFCSIEC 98 (147)
Q Consensus 70 ~C~lCkK~L~~~kDIyMYRGe~AFCS~EC 98 (147)
.|..|++.|. + ..|.-+..+.||. .|
T Consensus 37 ~C~~C~~~L~-~-~~f~~~~g~~yC~-~c 62 (72)
T 1x4l_A 37 NCKKCSLSLV-G-RGFLTERDDILCP-DC 62 (72)
T ss_dssp BCSSSCCBCT-T-SCCEECSSSEECH-HH
T ss_pred EeccCCCcCC-C-CccEeECCEEECh-hH
Confidence 5778999998 3 4566677899996 44
No 25
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.58 E-value=8.5 Score=23.79 Aligned_cols=27 Identities=33% Similarity=0.815 Sum_probs=19.8
Q ss_pred hhhhhccccccCCCCCCCceEEEcCCccccC
Q 032100 65 YCYLKSCYLCNKNLSLDKEVYMYRGDQGFCS 95 (147)
Q Consensus 65 ~~FL~~C~lCkK~L~~~kDIyMYRGe~AFCS 95 (147)
..| .|..|+++|. .+.|..+..+.||.
T Consensus 30 ~CF--~C~~C~~~L~--~~~~~~~~~~~yC~ 56 (70)
T 2d8z_A 30 ECF--VCTACRKQLS--GQRFTARDDFAYCL 56 (70)
T ss_dssp TTS--BCSSSCCBCT--TSCCEESSSSEECH
T ss_pred CCC--ccCCCCCcCC--cCceEeeCCeEECH
Confidence 445 5788999997 34566677799994
No 26
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.41 E-value=9.3 Score=24.34 Aligned_cols=33 Identities=15% Similarity=0.585 Sum_probs=21.8
Q ss_pred hhhhhccccccCCCCCCCceEEEcCCccccChhhHH
Q 032100 65 YCYLKSCYLCNKNLSLDKEVYMYRGDQGFCSIECRD 100 (147)
Q Consensus 65 ~~FL~~C~lCkK~L~~~kDIyMYRGe~AFCS~ECR~ 100 (147)
..| .|..|++.|..+...++-++.+.||. .|-.
T Consensus 40 ~CF--~C~~C~~~L~~g~~f~~~~~~~~~C~-~c~~ 72 (81)
T 1x6a_A 40 ECF--ACMSCKVIIEDGDAYALVQHATLYCG-KCHN 72 (81)
T ss_dssp TSC--BCTTTCCBCCTTSCEEECSSSCEEEH-HHHH
T ss_pred ccC--CccCCCCccCCCCcEEEeeCCEEECH-HHHH
Confidence 455 58889999985544332367789995 3543
No 27
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.73 E-value=8.5 Score=23.83 Aligned_cols=27 Identities=22% Similarity=0.726 Sum_probs=19.3
Q ss_pred ccccccCCCCCCCceEEEcCCccccChhhH
Q 032100 70 SCYLCNKNLSLDKEVYMYRGDQGFCSIECR 99 (147)
Q Consensus 70 ~C~lCkK~L~~~kDIyMYRGe~AFCS~ECR 99 (147)
.|..|++.|..+ .|.-+..+.||. .|-
T Consensus 35 ~C~~C~~~L~~~--~~~~~~~~~yC~-~cy 61 (72)
T 1x4k_A 35 ICHRCQQPIGTK--SFIPKDNQNFCV-PCY 61 (72)
T ss_dssp CCSSSCCCCCSS--SEEEETTEEEEH-HHH
T ss_pred cccccCCccCCC--ccCccCCeEECH-HHH
Confidence 477899999843 565577789995 443
No 28
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.19 E-value=6 Score=25.38 Aligned_cols=27 Identities=26% Similarity=0.551 Sum_probs=18.6
Q ss_pred ccccccCCCCCCCceEEEcCCccccChhhH
Q 032100 70 SCYLCNKNLSLDKEVYMYRGDQGFCSIECR 99 (147)
Q Consensus 70 ~C~lCkK~L~~~kDIyMYRGe~AFCS~ECR 99 (147)
.|..|++.|. ...|+.+..+.||. .|-
T Consensus 43 ~C~~C~~~L~--~~~~~~~~g~~yC~-~cy 69 (79)
T 1x62_A 43 VCTDCGTNLK--QKGHFFVEDQIYCE-KHA 69 (79)
T ss_dssp SCSSSCCCHH--HHCCEESSSCEECH-HHH
T ss_pred eeCCCCCCCC--CCCeEeECCEEECH-HHH
Confidence 4778889996 33466677789984 344
No 29
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=48.92 E-value=9.6 Score=26.31 Aligned_cols=30 Identities=27% Similarity=0.515 Sum_probs=21.6
Q ss_pred hhhhhccccccCCCCCCCceEEEcCCccccCh
Q 032100 65 YCYLKSCYLCNKNLSLDKEVYMYRGDQGFCSI 96 (147)
Q Consensus 65 ~~FL~~C~lCkK~L~~~kDIyMYRGe~AFCS~ 96 (147)
..| .|..|+++|......|..+..++||..
T Consensus 28 ~CF--~C~~C~~~L~~~~~~~~~~~g~~yC~~ 57 (131)
T 2xjy_A 28 DCL--SCDLCGCRLGEVGRRLYYKLGRKLCRR 57 (131)
T ss_dssp TTC--BCTTTCCBCSSTTCCEEEETTEEECHH
T ss_pred HHc--ccCcCCCccccCCCeEEEECCEEeecC
Confidence 445 577899999853456666777999953
No 30
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.70 E-value=8.5 Score=25.05 Aligned_cols=26 Identities=15% Similarity=0.227 Sum_probs=18.0
Q ss_pred ccccccCCCCCCCceEEE-cCCccccCh
Q 032100 70 SCYLCNKNLSLDKEVYMY-RGDQGFCSI 96 (147)
Q Consensus 70 ~C~lCkK~L~~~kDIyMY-RGe~AFCS~ 96 (147)
.|..|++.|.. ...|.| +..+.||..
T Consensus 44 ~C~~C~~~L~~-~~~~~~~~~g~~yC~~ 70 (82)
T 2co8_A 44 RCHTCEATLWP-GGYEQHPGDGHFYCLQ 70 (82)
T ss_dssp BCSSSCCBCCT-TSEECCTTTCCCEETT
T ss_pred EEcCCCCCcCC-CceeEeCcCCEEEChH
Confidence 57788899983 444434 677899964
No 31
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.48 E-value=11 Score=23.85 Aligned_cols=27 Identities=22% Similarity=0.668 Sum_probs=19.8
Q ss_pred ccccccCCCCCCCceEEEcCCccccChhhH
Q 032100 70 SCYLCNKNLSLDKEVYMYRGDQGFCSIECR 99 (147)
Q Consensus 70 ~C~lCkK~L~~~kDIyMYRGe~AFCS~ECR 99 (147)
.|..|++.|. +. .|.-++.+.||. .|-
T Consensus 43 ~C~~C~~~L~-~~-~~~~~~~~~yC~-~cy 69 (80)
T 2cuq_A 43 VCTGCQTPLA-GQ-QFTSRDEDPYCV-ACF 69 (80)
T ss_dssp BCSSSCCBCT-TC-CEEECSSSEEEH-HHH
T ss_pred CcccCCCcCC-CC-eeEeECCEEECH-HHH
Confidence 5788999997 33 566677899994 454
No 32
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.51 E-value=11 Score=23.87 Aligned_cols=24 Identities=21% Similarity=0.600 Sum_probs=18.1
Q ss_pred ccccccCCCCCCCceEEEcCCccccC
Q 032100 70 SCYLCNKNLSLDKEVYMYRGDQGFCS 95 (147)
Q Consensus 70 ~C~lCkK~L~~~kDIyMYRGe~AFCS 95 (147)
.|..|++.|. + +.|.-+..+.||.
T Consensus 37 ~C~~C~~~L~-~-~~f~~~~g~~yC~ 60 (76)
T 1x68_A 37 NCGKCSVSLV-G-KGFLTQNKEIFCQ 60 (76)
T ss_dssp BCTTTCCBCS-S-SCEEEETTEEEET
T ss_pred ChhhCCCcCC-C-CceEeECCEEECH
Confidence 5778999998 3 4455567799996
No 33
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.72 E-value=11 Score=23.99 Aligned_cols=27 Identities=19% Similarity=0.736 Sum_probs=19.6
Q ss_pred ccccccCCCCCCCceEEEcCCccccChhhH
Q 032100 70 SCYLCNKNLSLDKEVYMYRGDQGFCSIECR 99 (147)
Q Consensus 70 ~C~lCkK~L~~~kDIyMYRGe~AFCS~ECR 99 (147)
.|..|++.|..+ .|.-++.+.||. .|-
T Consensus 45 ~C~~C~~~L~~~--~~~~~~~~~yC~-~cy 71 (82)
T 1x63_A 45 TCSNCKQVIGTG--SFFPKGEDFYCV-TCH 71 (82)
T ss_dssp CCSSSCCCCTTS--CEEEETTEEEEH-HHH
T ss_pred chhhCCCccCCC--ccEeeCCEEECH-HHH
Confidence 578899999844 455577799995 443
No 34
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.43 E-value=12 Score=23.94 Aligned_cols=25 Identities=20% Similarity=0.611 Sum_probs=18.8
Q ss_pred ccccccCCCCCCCceEEEcCCccccCh
Q 032100 70 SCYLCNKNLSLDKEVYMYRGDQGFCSI 96 (147)
Q Consensus 70 ~C~lCkK~L~~~kDIyMYRGe~AFCS~ 96 (147)
.|..|++.|. .+.|.-++.+.||..
T Consensus 45 ~C~~C~~~L~--~~~f~~~~~~~~C~~ 69 (82)
T 2ehe_A 45 RCCRCQRSLA--DEPFTCQDSELLCND 69 (82)
T ss_dssp BCTTTCCBCS--SCCEEEETTEEEETT
T ss_pred eecCCCCccC--CCccEeeCCEEECHH
Confidence 5788999998 335666777999953
No 35
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.32 E-value=11 Score=23.78 Aligned_cols=24 Identities=21% Similarity=0.497 Sum_probs=18.4
Q ss_pred ccccccCCCCCCCceEEEcCCccccC
Q 032100 70 SCYLCNKNLSLDKEVYMYRGDQGFCS 95 (147)
Q Consensus 70 ~C~lCkK~L~~~kDIyMYRGe~AFCS 95 (147)
.|..|++.|..+ + |..++.+.||.
T Consensus 43 ~C~~C~~~L~~~-~-~~~~~~~~yC~ 66 (80)
T 1x3h_A 43 VCGDCFTSFSTG-S-FFELDGRPFCE 66 (80)
T ss_dssp BCSSSCCBSCSS-C-CEESSSCEECH
T ss_pred ChhhCCCCCCCC-c-EEeECCEEECH
Confidence 478899999843 3 66677899995
No 36
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=44.94 E-value=8.8 Score=26.74 Aligned_cols=30 Identities=17% Similarity=0.317 Sum_probs=22.2
Q ss_pred hhhhhccccccCCCCCCCceEEEcCCccccCh
Q 032100 65 YCYLKSCYLCNKNLSLDKEVYMYRGDQGFCSI 96 (147)
Q Consensus 65 ~~FL~~C~lCkK~L~~~kDIyMYRGe~AFCS~ 96 (147)
.+| .|..|++.|......|+.+..++||..
T Consensus 31 ~CF--~C~~C~~~L~~~~~~~~~~~g~~yC~~ 60 (122)
T 1m3v_A 31 RCL--KCSSCQAQLGDIGTSSYTKSGMILCRN 60 (122)
T ss_dssp HHH--CCSSSCCCTTTSEECCEEETTEEECHH
T ss_pred hCC--CcCCCCCcccccCCeEEEECCeeecHH
Confidence 455 688999999843456777888999853
No 37
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.68 E-value=7.4 Score=24.43 Aligned_cols=24 Identities=13% Similarity=0.414 Sum_probs=17.2
Q ss_pred ccccccCCCCCCCceEEEcCCccccC
Q 032100 70 SCYLCNKNLSLDKEVYMYRGDQGFCS 95 (147)
Q Consensus 70 ~C~lCkK~L~~~kDIyMYRGe~AFCS 95 (147)
.|..|++.|..+ + |.-+..+.||.
T Consensus 41 ~C~~C~~~L~~~-~-~~~~~g~~yC~ 64 (77)
T 1g47_A 41 VCAQCFQQFPEG-L-FYEFEGRKYCE 64 (77)
T ss_dssp CCTTTCCCCGGG-C-SEEETTEEECH
T ss_pred eECCCCCCCCCC-C-eEeECCeEeCH
Confidence 477889999854 4 55556689984
No 38
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.65 E-value=11 Score=24.57 Aligned_cols=25 Identities=20% Similarity=0.615 Sum_probs=19.4
Q ss_pred ccccccCCCCCCCceEEEcCCccccChh
Q 032100 70 SCYLCNKNLSLDKEVYMYRGDQGFCSIE 97 (147)
Q Consensus 70 ~C~lCkK~L~~~kDIyMYRGe~AFCS~E 97 (147)
.|..|++.|. + .|..+..+.||...
T Consensus 44 ~C~~C~~~L~-~--~~~~~~g~~yC~~~ 68 (80)
T 2dj7_A 44 KCQTCSVILT-G--EYISKDGVPYCESD 68 (80)
T ss_dssp BCSSSCCBCS-S--CCEEETTEEECTTH
T ss_pred CcCcCCCCcC-C--CeEEECCEEECHHH
Confidence 5778999998 4 47778889999653
No 39
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=42.38 E-value=12 Score=27.28 Aligned_cols=32 Identities=19% Similarity=0.569 Sum_probs=22.2
Q ss_pred ccccccCCCCCCCceEEEcCCccccChhhHHHH
Q 032100 70 SCYLCNKNLSLDKEVYMYRGDQGFCSIECRDRQ 102 (147)
Q Consensus 70 ~C~lCkK~L~~~kDIyMYRGe~AFCS~ECR~~q 102 (147)
.|..|++.|..|...|+-...+.||. .|-.+.
T Consensus 95 ~C~~C~~~L~~g~~f~~~~~g~~~C~-~c~~~~ 126 (169)
T 2rgt_A 95 ACVVCKRQLATGDEFYLMEDSRLVCK-ADYETA 126 (169)
T ss_dssp BCTTTCCBCCTTCEEEECTTSCEEEH-HHHHHH
T ss_pred cCCCCCCCCCCCCceEEccCCeEECH-HHHHHH
Confidence 57889999986666666556689995 454443
No 40
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.04 E-value=14 Score=24.14 Aligned_cols=28 Identities=14% Similarity=0.536 Sum_probs=20.0
Q ss_pred ccccccCCCCCCCceEEEcCCccccChhhHH
Q 032100 70 SCYLCNKNLSLDKEVYMYRGDQGFCSIECRD 100 (147)
Q Consensus 70 ~C~lCkK~L~~~kDIyMYRGe~AFCS~ECR~ 100 (147)
.|..|++.|.. ..|.-+..+.||. .|-.
T Consensus 53 ~C~~C~~~L~~--~~f~~~~g~~yC~-~cy~ 80 (90)
T 2dar_A 53 NCAHCKNTMAY--IGFVEEKGALYCE-LCYE 80 (90)
T ss_dssp BCSSSCCBCSS--SCBEESSSCEECH-HHHH
T ss_pred ccCCCCCCCCC--CEeEeECCEEECH-HHHH
Confidence 57789999983 3466677899995 4543
No 41
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.57 E-value=14 Score=22.75 Aligned_cols=27 Identities=19% Similarity=0.578 Sum_probs=18.6
Q ss_pred ccccccCCCCCCCceEEEcCCccccChhhH
Q 032100 70 SCYLCNKNLSLDKEVYMYRGDQGFCSIECR 99 (147)
Q Consensus 70 ~C~lCkK~L~~~kDIyMYRGe~AFCS~ECR 99 (147)
.|..|+++|.. .. |.-+..+.||. .|-
T Consensus 35 ~C~~C~~~L~~-~~-~~~~~~~~yC~-~cy 61 (72)
T 1wyh_A 35 LCSGCEQPLGS-RS-FVPDKGAHYCV-PCY 61 (72)
T ss_dssp BCTTTCCBTTT-SC-EEEETTEEEEH-HHH
T ss_pred eECCCCCcCCC-Cc-cCCcCCeEECH-HHH
Confidence 57789999984 34 55556689984 443
No 42
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=40.80 E-value=10 Score=23.86 Aligned_cols=26 Identities=31% Similarity=0.958 Sum_probs=18.9
Q ss_pred ccccccCCCCCCCceEEEcCCccccChhh
Q 032100 70 SCYLCNKNLSLDKEVYMYRGDQGFCSIEC 98 (147)
Q Consensus 70 ~C~lCkK~L~~~kDIyMYRGe~AFCS~EC 98 (147)
.|..|++.|. +. .|.-++.+.||. .|
T Consensus 48 ~C~~C~~~L~-~~-~f~~~~~~~yC~-~c 73 (77)
T 2egq_A 48 HCKKCSVNLA-NK-RFVFHQEQVYCP-DC 73 (77)
T ss_dssp BCSSSCCBCT-TS-CCCEETTEECCH-HH
T ss_pred EehhcCCCCC-CC-ccEeECCEEECh-HH
Confidence 5778999998 33 455667789995 44
No 43
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=40.31 E-value=12 Score=25.77 Aligned_cols=27 Identities=26% Similarity=0.465 Sum_probs=20.1
Q ss_pred ccccccCCCCCCCceEEEcCCccccCh
Q 032100 70 SCYLCNKNLSLDKEVYMYRGDQGFCSI 96 (147)
Q Consensus 70 ~C~lCkK~L~~~kDIyMYRGe~AFCS~ 96 (147)
.|..|++.|......|..+..++||..
T Consensus 32 ~C~~C~~~L~~~g~~~~~~~g~~yC~~ 58 (114)
T 1j2o_A 32 SCDLCGCRLGEVGRRLYYKLGRKLCRR 58 (114)
T ss_dssp CCSSSCSCCCCSSSCCCCBTTBCCCHH
T ss_pred cccccCCchhcCCCeeEEECCeeechH
Confidence 578899999842345767778999954
No 44
>4fc8_A Transcription protein RTR1; zinc finger; 2.50A {Kluyveromyces lactis}
Probab=40.24 E-value=12 Score=30.60 Aligned_cols=37 Identities=22% Similarity=0.401 Sum_probs=20.8
Q ss_pred hccc--cccCCCCCCCceE-------------EEcCCccccChhhHHHHHHH
Q 032100 69 KSCY--LCNKNLSLDKEVY-------------MYRGDQGFCSIECRDRQIFL 105 (147)
Q Consensus 69 ~~C~--lCkK~L~~~kDIy-------------MYRGe~AFCS~ECR~~qI~~ 105 (147)
+.|. +|.+++..-++-| .|-.-+-|||..|=..-..+
T Consensus 71 k~CGYPLC~~~~~~~~~ky~Is~~tk~~~~nkvyd~l~~fCS~~Cy~aS~f~ 122 (219)
T 4fc8_A 71 KRCGYPLCSKSQARVRDPFADVQMTNFLRQNNPYAYLTEYCTKAHFRCSQFY 122 (219)
T ss_dssp TCCSSTTCCSCCSCC-------------------CGGGTCSSHHHHHHHHHH
T ss_pred ccCCCCCCCCcccccCCCceeeeccccccccCcHHHHHhhhhHHHHHHHHHH
Confidence 4554 6777665333333 45556899999997764444
No 45
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=39.64 E-value=9 Score=27.23 Aligned_cols=27 Identities=15% Similarity=0.233 Sum_probs=14.0
Q ss_pred ccccccCCCCCCCceEEEcCCccccCh
Q 032100 70 SCYLCNKNLSLDKEVYMYRGDQGFCSI 96 (147)
Q Consensus 70 ~C~lCkK~L~~~kDIyMYRGe~AFCS~ 96 (147)
.|..|++.|......|..+..+.||..
T Consensus 90 ~C~~C~~~L~~~g~~f~~~dg~~yC~~ 116 (123)
T 2l4z_A 90 KCSSCQAQLGDIGTSSYTKSGMILCRN 116 (123)
T ss_dssp BCTTTCCBGGGTTCCCBCSSSCCBCHH
T ss_pred CcCcCCCcccccCCceEEECCEEeCHH
Confidence 455566676521223444555677643
No 46
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=39.60 E-value=13 Score=24.22 Aligned_cols=27 Identities=30% Similarity=0.619 Sum_probs=18.5
Q ss_pred ccccccCCCCCCCceEEEcCCccccChhhH
Q 032100 70 SCYLCNKNLSLDKEVYMYRGDQGFCSIECR 99 (147)
Q Consensus 70 ~C~lCkK~L~~~kDIyMYRGe~AFCS~ECR 99 (147)
.|..|++.|.. .+ |+.+..+.||. .|-
T Consensus 53 ~C~~C~~~L~~-~~-~~~~~g~~yC~-~~y 79 (89)
T 1x64_A 53 VCADCNLNLKQ-KG-YFFVEGELYCE-THA 79 (89)
T ss_dssp CCSSSCCCTTT-SC-CEEETTEEECH-HHH
T ss_pred EecCCCCCCCC-CC-eEeECCEEECH-HHH
Confidence 47788999984 34 55567789984 443
No 47
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=38.71 E-value=11 Score=24.01 Aligned_cols=27 Identities=26% Similarity=0.679 Sum_probs=19.2
Q ss_pred ccccccCCCCCCCceEEEcCCccccChhhH
Q 032100 70 SCYLCNKNLSLDKEVYMYRGDQGFCSIECR 99 (147)
Q Consensus 70 ~C~lCkK~L~~~kDIyMYRGe~AFCS~ECR 99 (147)
.|..|++.|..+ . |..+..+.||. .|-
T Consensus 36 ~C~~C~~~L~~~-~-~~~~~~~~yC~-~cy 62 (81)
T 1a7i_A 36 LCMVCRKNLDST-T-VAIHDAEVYCK-SCY 62 (81)
T ss_dssp ECSSSCCEECSS-C-CEEETTEEECS-HHH
T ss_pred ccCCCCCCCCCC-C-eEeeCCEEECH-HHH
Confidence 578899999843 3 55567799994 443
No 48
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.47 E-value=14 Score=24.16 Aligned_cols=24 Identities=33% Similarity=0.721 Sum_probs=17.5
Q ss_pred ccccccCCCCCCCceEEEcCCccccC
Q 032100 70 SCYLCNKNLSLDKEVYMYRGDQGFCS 95 (147)
Q Consensus 70 ~C~lCkK~L~~~kDIyMYRGe~AFCS 95 (147)
.|..|++.|..+ + |.-+..+.||.
T Consensus 44 ~C~~C~~~L~~~-~-~~~~~g~~yC~ 67 (91)
T 2d8y_A 44 RCSYCNNKLSLG-T-YASLHGRIYCK 67 (91)
T ss_dssp BCTTTCCBCCTT-T-CCCSSSCCCCH
T ss_pred eeCCCCCCCCCC-C-cEeECCEEECH
Confidence 477889999853 4 55566789984
No 49
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=34.07 E-value=23 Score=24.34 Aligned_cols=26 Identities=15% Similarity=0.465 Sum_probs=18.6
Q ss_pred ccccccCCCCCCCceEEEcCCccccCh
Q 032100 70 SCYLCNKNLSLDKEVYMYRGDQGFCSI 96 (147)
Q Consensus 70 ~C~lCkK~L~~~kDIyMYRGe~AFCS~ 96 (147)
.|..|++.|..+...|+ .+.+.||..
T Consensus 96 ~C~~C~~~L~~g~~f~~-~~~~~~C~~ 121 (131)
T 2xjy_A 96 KCAACQKHFCVGDRYLL-INSDIVCEQ 121 (131)
T ss_dssp BCTTTCCBCCTTCEEEE-ETTEEEEGG
T ss_pred ccCCCCCCCCCCCEEEE-ECCEEEcHH
Confidence 47788999975555444 567899964
No 50
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=33.78 E-value=28 Score=23.46 Aligned_cols=30 Identities=20% Similarity=0.477 Sum_probs=23.1
Q ss_pred hhhhhccccccCCCCCCCceEEEcCCccccCh
Q 032100 65 YCYLKSCYLCNKNLSLDKEVYMYRGDQGFCSI 96 (147)
Q Consensus 65 ~~FL~~C~lCkK~L~~~kDIyMYRGe~AFCS~ 96 (147)
..+-..|..|+|+|.-- .|--+-..-||+.
T Consensus 12 ~~~~~rC~~C~kkvgl~--~f~CrCg~~FC~~ 41 (64)
T 1wg2_A 12 VRPNNRCFSCNKKVGVM--GFKCKCGSTFCGS 41 (64)
T ss_dssp SCCSCSCTTTCCCCTTS--CEECTTSCEECSS
T ss_pred CCcCCcChhhCCccccc--CeEeecCCEeccc
Confidence 44567899999998743 5667888999984
No 51
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=33.00 E-value=17 Score=21.86 Aligned_cols=34 Identities=18% Similarity=0.359 Sum_probs=18.4
Q ss_pred hhhhccccccCCCCCCCceEEEcCCccccChhhHHHH
Q 032100 66 CYLKSCYLCNKNLSLDKEVYMYRGDQGFCSIECRDRQ 102 (147)
Q Consensus 66 ~FL~~C~lCkK~L~~~kDIyMYRGe~AFCS~ECR~~q 102 (147)
-+...|..|.++- .-..---....|||.+|....
T Consensus 7 ~~~~~C~~C~~~~---~~~C~~C~~~~YCs~~CQ~~~ 40 (52)
T 2jw6_A 7 RKEQSCVNCGREA---MSECTGCHKVNYCSTFCQRKD 40 (52)
T ss_dssp ----CCSSSSSSC---SEECTTTCSSEESSHHHHHHH
T ss_pred ccCCcCCCCCCCC---cCcCCCCCCEeecCHHHHHHH
Confidence 3566888888741 111111235679999998764
No 52
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=30.57 E-value=23 Score=23.20 Aligned_cols=25 Identities=20% Similarity=0.599 Sum_probs=17.4
Q ss_pred ccccccCCCCCCCceEEEcCCccccCh
Q 032100 70 SCYLCNKNLSLDKEVYMYRGDQGFCSI 96 (147)
Q Consensus 70 ~C~lCkK~L~~~kDIyMYRGe~AFCS~ 96 (147)
.|..|+++|. + +.|.-+..+.||..
T Consensus 35 ~C~~C~~~L~-~-~~~~~~~g~~yC~~ 59 (101)
T 2cup_A 35 RCAKCLHPLA-N-ETFVAKDNKILCNK 59 (101)
T ss_dssp CCSSSCCCTT-S-SCCEEETTEEECHH
T ss_pred cccccCCCCC-c-CeeECcCCEEEChh
Confidence 4778899996 3 44555667899943
No 53
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.04 E-value=26 Score=22.50 Aligned_cols=26 Identities=23% Similarity=0.480 Sum_probs=19.3
Q ss_pred hhhhhccccccCCCCCCCceEEEcCCccccC
Q 032100 65 YCYLKSCYLCNKNLSLDKEVYMYRGDQGFCS 95 (147)
Q Consensus 65 ~~FL~~C~lCkK~L~~~kDIyMYRGe~AFCS 95 (147)
.+| .|..|++.|..+ .| -+..+.||.
T Consensus 40 ~CF--~C~~C~~~L~~~--~f-~~~g~~yC~ 65 (79)
T 2cor_A 40 DHF--NCANCGKELTAD--AR-ELKGELYCL 65 (79)
T ss_dssp TTS--BCSSSCCBCCTT--CE-EETTEEECH
T ss_pred CCC--EeCCCCCccCCC--CE-eECCEEeCH
Confidence 556 688999999944 36 456689995
No 54
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.76 E-value=27 Score=22.19 Aligned_cols=24 Identities=21% Similarity=0.538 Sum_probs=17.5
Q ss_pred ccccccCCCCCCCceEEEc-CCccccC
Q 032100 70 SCYLCNKNLSLDKEVYMYR-GDQGFCS 95 (147)
Q Consensus 70 ~C~lCkK~L~~~kDIyMYR-Ge~AFCS 95 (147)
.|..|++.|. .+.|+.. ..+.||.
T Consensus 43 ~C~~C~~~L~--~~~f~~~~~g~~yC~ 67 (81)
T 2dlo_A 43 TCVVCHRGLD--GIPFTVDATSQIHCI 67 (81)
T ss_dssp BCSSSCCBCT--TSCEECCTTCCCEEH
T ss_pred CcccCCCccC--CCeeEECCCCEEECH
Confidence 5788999998 3456654 4589985
No 55
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=26.49 E-value=46 Score=22.43 Aligned_cols=30 Identities=27% Similarity=0.537 Sum_probs=23.3
Q ss_pred hhhhhccccccCCCCCCCceEEEcCCccccCh
Q 032100 65 YCYLKSCYLCNKNLSLDKEVYMYRGDQGFCSI 96 (147)
Q Consensus 65 ~~FL~~C~lCkK~L~~~kDIyMYRGe~AFCS~ 96 (147)
..+-..|..|+|++.-- .|--|-..-||+.
T Consensus 12 k~~~~rC~~C~kkvgl~--~f~CrCg~~FC~~ 41 (64)
T 1wfh_A 12 PQRPNRCTVCRKRVGLT--GFMCRCGTTFCGS 41 (64)
T ss_dssp CSSCCCCTTTCCCCCTT--CEECSSSCEECTT
T ss_pred CCcCCcChhhCCccCcc--CEEeecCCEeccc
Confidence 34557899999998743 5777888999985
No 56
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=24.03 E-value=43 Score=23.22 Aligned_cols=30 Identities=23% Similarity=0.530 Sum_probs=23.2
Q ss_pred hhhhhccccccCCCCCCCceEEEcCCccccCh
Q 032100 65 YCYLKSCYLCNKNLSLDKEVYMYRGDQGFCSI 96 (147)
Q Consensus 65 ~~FL~~C~lCkK~L~~~kDIyMYRGe~AFCS~ 96 (147)
..+-..|..|+|++.-- .|--|-..-||+.
T Consensus 22 k~~~~RC~~C~kkvgL~--~f~CrCg~~FCs~ 51 (74)
T 1wfp_A 22 KSTATRCLSCNKKVGVT--GFKCRCGSTFCGT 51 (74)
T ss_dssp TCCCCBCSSSCCBCTTT--CEECTTSCEECTT
T ss_pred cccCccchhhcCccccc--ceEeccCCEeccc
Confidence 34557899999998843 5777888999984
No 57
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=23.42 E-value=90 Score=21.56 Aligned_cols=30 Identities=23% Similarity=0.574 Sum_probs=22.7
Q ss_pred hhhhhccccccCCCCCCCceEEEcCCccccCh
Q 032100 65 YCYLKSCYLCNKNLSLDKEVYMYRGDQGFCSI 96 (147)
Q Consensus 65 ~~FL~~C~lCkK~L~~~kDIyMYRGe~AFCS~ 96 (147)
..+-..|+.|+|+++- --|--+-..-||+.
T Consensus 22 k~~~nRC~~CrKkvgL--~gf~CrCg~~FCs~ 51 (74)
T 1wfl_A 22 KPKKNRCFMCRKKVGL--TGFDCRCGNLFCGL 51 (74)
T ss_dssp CSCTTBCSSSCCBCGG--GCEECTTSCEECSS
T ss_pred CCcCCcChhhCCcccc--cCeecCCCCEechh
Confidence 3456789999999873 24777878899984
No 58
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens}
Probab=22.57 E-value=35 Score=21.44 Aligned_cols=33 Identities=18% Similarity=0.509 Sum_probs=18.9
Q ss_pred hhccccccCCCCCCCceEEEcCCccccChhhHHHHH
Q 032100 68 LKSCYLCNKNLSLDKEVYMYRGDQGFCSIECRDRQI 103 (147)
Q Consensus 68 L~~C~lCkK~L~~~kDIyMYRGe~AFCS~ECR~~qI 103 (147)
...|..|.+. ..-..---....|||.+|.....
T Consensus 17 ~~~C~~C~~~---~~~~Cs~C~~~~YCs~~CQ~~~W 49 (64)
T 2odd_A 17 SESCWNCGRK---ASETCSGCNTARYCGSFCQHKDW 49 (64)
T ss_dssp SSSCTTTSSC---CCEEETTTSCCEESSHHHHHHHH
T ss_pred CCcCccccCC---CcccCCCCCChhhCCHHHHHHHH
Confidence 4567777763 11122112356799999987643
No 59
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=22.19 E-value=42 Score=24.85 Aligned_cols=27 Identities=22% Similarity=0.556 Sum_probs=19.1
Q ss_pred ccccccCCCCCCCceEEEcCCccccChhhH
Q 032100 70 SCYLCNKNLSLDKEVYMYRGDQGFCSIECR 99 (147)
Q Consensus 70 ~C~lCkK~L~~~kDIyMYRGe~AFCS~ECR 99 (147)
.|..|++.|..+ + |.-+..+.|| ..|-
T Consensus 144 ~C~~C~~~L~~~-~-~~~~~g~~yC-~~cy 170 (192)
T 1b8t_A 144 RCAKCGKSLEST-T-LADKDGEIYC-KGCY 170 (192)
T ss_dssp BCTTTCCBCCSS-S-EEEETTEEEE-HHHH
T ss_pred CccccCCCCCCC-c-ccccCCEEeC-HHHH
Confidence 577888999843 3 6667779999 4443
No 60
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=22.18 E-value=47 Score=24.57 Aligned_cols=30 Identities=20% Similarity=0.398 Sum_probs=19.9
Q ss_pred ccccccCCCCCCCceEEEcCCccccChhhHHH
Q 032100 70 SCYLCNKNLSLDKEVYMYRGDQGFCSIECRDR 101 (147)
Q Consensus 70 ~C~lCkK~L~~~kDIyMYRGe~AFCS~ECR~~ 101 (147)
.|..|++.|..+...|+ ...+.||. .|-.+
T Consensus 99 ~C~~C~~~L~~g~~f~~-~~g~~yC~-~c~~~ 128 (188)
T 1rut_X 99 TCSTCRNRLVPGDRFHY-INGSLFCE-HDRPT 128 (188)
T ss_dssp BCTTTCCBCCTTCEEEE-ETTEEEEG-GGCCT
T ss_pred eECCCCCCCCCCCeEEE-ECCeEECH-HHHHH
Confidence 46788999975554444 55689994 45443
No 61
>3u52_A Phenol hydroxylase component PHN; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_A 2inp_A
Probab=20.01 E-value=49 Score=29.59 Aligned_cols=35 Identities=23% Similarity=0.467 Sum_probs=26.7
Q ss_pred hhhccccccCCCCCC---------CceEEEcCCc-cccChhhHHH
Q 032100 67 YLKSCYLCNKNLSLD---------KEVYMYRGDQ-GFCSIECRDR 101 (147)
Q Consensus 67 FL~~C~lCkK~L~~~---------kDIyMYRGe~-AFCS~ECR~~ 101 (147)
+-..|..|.-++... -.+-.|.|.+ .|||..|+..
T Consensus 395 lp~~C~~Cq~P~~~~~~~~~~~~~~~~~~~~G~~y~fCs~~C~~~ 439 (511)
T 3u52_A 395 LPQLCQVCQIPTIFTEKDAPTMLSHRQIEHEGERYHFCSDGCCDI 439 (511)
T ss_dssp CBCBCTTTCSBSCCEETTEEEEECCEEEEETTEEEEESSHHHHHH
T ss_pred CCCccCCCCCcccccCCCCCCcccceeEEECCEEEEecChHHHHH
Confidence 346899999998632 2356789865 7999999986
Done!