BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032101
(147 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O49595|HMGB1_ARATH High mobility group B protein 1 OS=Arabidopsis thaliana GN=HMGB1
PE=1 SV=1
Length = 178
Score = 161 bits (408), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 90/126 (71%), Positives = 102/126 (80%), Gaps = 4/126 (3%)
Query: 1 MKGAKGKGAARVSQEALKP-NDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPP 59
MK AKGK + ++EALKP +DRKVGKRKA K +KR+ ++EKKAKKDPNKPKR P
Sbjct: 1 MKTAKGKDKVKTTKEALKPVDDRKVGKRKAPAEKP---TKRETRKEKKAKKDPNKPKRAP 57
Query: 60 SAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKK 119
SAFFVFLE+FR TFKKENPNV AVSAVGKA G KWKSMS AEKAPYE KA K K+EY K+
Sbjct: 58 SAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQ 117
Query: 120 MNAYNK 125
M+AYNK
Sbjct: 118 MDAYNK 123
>sp|P26585|HMGL_SOYBN HMG1/2-like protein OS=Glycine max PE=2 SV=1
Length = 152
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/82 (75%), Positives = 67/82 (81%)
Query: 47 KAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYE 106
KA KDPNKPKRPPSAFFVF+EEFRK F KE+P AVSAVGKAAG KWK+MS AEKAPY
Sbjct: 36 KAAKDPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYV 95
Query: 107 SKAEKLKSEYGKKMNAYNKKQV 128
+K+EK K EY K M AYNKKQ
Sbjct: 96 AKSEKRKVEYEKNMRAYNKKQA 117
>sp|P40619|HMGL_IPONI HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1
Length = 144
Score = 116 bits (290), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 57/85 (67%), Positives = 70/85 (82%)
Query: 43 KREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEK 102
K+ KKA KDPNKPKRPPSAFFVF+E+FRKT+K+++PN +V+ VGKA G KWK ++ AEK
Sbjct: 24 KKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEK 83
Query: 103 APYESKAEKLKSEYGKKMNAYNKKQ 127
AP+ SKAEK K EY K + AYNKKQ
Sbjct: 84 APFISKAEKRKQEYEKNLQAYNKKQ 108
>sp|P27347|MNB1B_MAIZE DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1
Length = 157
Score = 112 bits (281), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 85/129 (65%), Gaps = 14/129 (10%)
Query: 1 MKGAKGKGAARVSQEALKPNDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPPS 60
MKGAK KGAA+ D K+ + K G R+ KA KDPNKPKR PS
Sbjct: 1 MKGAKSKGAAKA--------DAKLAVKSKGAEKPAKG------RKGKAGKDPNKPKRAPS 46
Query: 61 AFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKM 120
AFFVF+EEFRK FK++NP +V+AVGKAAG +WKS+S ++KAPY +KA KLK EY K +
Sbjct: 47 AFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAI 106
Query: 121 NAYNKKQVT 129
AYNK + T
Sbjct: 107 AAYNKGEST 115
>sp|O49596|HMGB2_ARATH High mobility group B protein 2 OS=Arabidopsis thaliana GN=HMGB2
PE=1 SV=1
Length = 144
Score = 112 bits (280), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 58/83 (69%), Positives = 67/83 (80%)
Query: 44 REKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKA 103
R K A KDPNKPKRP SAFFVF+E+FR+TFKKENP +V+ VGKAAG KWKS+S +EKA
Sbjct: 27 RGKAAAKDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKA 86
Query: 104 PYESKAEKLKSEYGKKMNAYNKK 126
PY +KAEK K EY K + AYNKK
Sbjct: 87 PYVAKAEKRKVEYEKNIKAYNKK 109
>sp|Q42344|HMGB4_ARATH High mobility group B protein 4 OS=Arabidopsis thaliana GN=HMGB4
PE=1 SV=1
Length = 138
Score = 109 bits (272), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 75/126 (59%), Gaps = 20/126 (15%)
Query: 1 MKGAKGKGAARVSQEALKPNDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPPS 60
MKG + K A + + LK RK GK K KKDPN+PKRPPS
Sbjct: 1 MKGGESKAEATSTDQRLKTRGRKAGK--------------------KTKKDPNQPKRPPS 40
Query: 61 AFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKM 120
AFFVFLE+FRK F NPN +V+ VGKAAG +WK+M+ +KAPY +KAE K+EY K +
Sbjct: 41 AFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKAMTDEDKAPYVAKAESRKTEYIKNV 100
Query: 121 NAYNKK 126
YN K
Sbjct: 101 QQYNLK 106
>sp|P93047|HMGB3_ARATH High mobility group B protein 3 OS=Arabidopsis thaliana GN=HMGB3
PE=1 SV=1
Length = 141
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/91 (62%), Positives = 70/91 (76%)
Query: 36 SGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWK 95
S +K+ K K A KDPNKPKRP SAFFVF+E+FR T+K+E+P +V+AVGKA G KWK
Sbjct: 16 SVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWK 75
Query: 96 SMSPAEKAPYESKAEKLKSEYGKKMNAYNKK 126
S+S +EKAPY +KA+K K EY K M AYNKK
Sbjct: 76 SLSDSEKAPYVAKADKRKVEYEKNMKAYNKK 106
>sp|P40621|HMGL_WHEAT HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1
Length = 161
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/130 (53%), Positives = 83/130 (63%), Gaps = 23/130 (17%)
Query: 1 MKGAKGKGAARVSQEALKPNDRKVGKRKAATAKLDSGSKRQGK-----REKKAKKDPNKP 55
MKGAK KGAA+ A AKL SK K ++ KA KDPNKP
Sbjct: 1 MKGAKSKGAAK------------------ADAKLAVKSKGAEKPAAKGKKGKAGKDPNKP 42
Query: 56 KRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSE 115
KR PSAFFVF+ EFR+ FK++NP +V+AVGKAAG +WKS+S +EKAPY +KA KLK E
Sbjct: 43 KRAPSAFFVFMGEFREEFKQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKANKLKGE 102
Query: 116 YGKKMNAYNK 125
Y K + AYNK
Sbjct: 103 YNKAIAAYNK 112
>sp|P40620|HMGL_VICFA HMG1/2-like protein OS=Vicia faba PE=2 SV=1
Length = 149
Score = 99.4 bits (246), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 48/77 (62%), Positives = 60/77 (77%)
Query: 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKA 109
KDPNKPKRPPSAFFVF+ +FR+ +KK++PN +V+AVGKA G +WKS+S EKAPY +A
Sbjct: 40 KDPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRA 99
Query: 110 EKLKSEYGKKMNAYNKK 126
K K EY + AYNKK
Sbjct: 100 LKKKEEYEITLQAYNKK 116
>sp|O49597|HMGB5_ARATH High mobility group B protein 5 OS=Arabidopsis thaliana GN=HMGB5
PE=2 SV=1
Length = 125
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/90 (48%), Positives = 61/90 (67%)
Query: 35 DSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
D K +G + K KDPN+PK+PPS FFVFL++FRK F NP+ +V VG+AAG KW
Sbjct: 14 DDRLKVRGNKVGKKTKDPNRPKKPPSPFFVFLDDFRKEFNLANPDNKSVGNVGRAAGKKW 73
Query: 95 KSMSPAEKAPYESKAEKLKSEYGKKMNAYN 124
K+M+ E+AP+ +K++ K+EY M YN
Sbjct: 74 KTMTEEERAPFVAKSQSKKTEYAVTMQQYN 103
>sp|Q8LDF9|HMGB7_ARATH High mobility group B protein 7 OS=Arabidopsis thaliana GN=HMGB7
PE=1 SV=1
Length = 241
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 45 EKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAP 104
EKK+ NKPKRP +AFF+F+ +FRKTFK E+ A A K G KWKS++ EK
Sbjct: 105 EKKSSSTSNKPKRPLTAFFIFMSDFRKTFKSEHNGSLAKDA-AKIGGEKWKSLTEEEKKV 163
Query: 105 YESKAEKLKSEYGKKM 120
Y KA +LK+EY K +
Sbjct: 164 YLDKAAELKAEYNKSL 179
>sp|O64702|HMG14_ARATH High mobility group B protein 14 OS=Arabidopsis thaliana GN=HMGB14
PE=2 SV=2
Length = 151
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 48/72 (66%)
Query: 55 PKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKS 114
PK+P +AFF FL++FRK +++ENP+V ++ +GK G KWK+M+ EK Y A + +
Sbjct: 63 PKKPATAFFFFLDDFRKQYQEENPDVKSMREIGKTCGEKWKTMTYEEKVKYYDIATEKRE 122
Query: 115 EYGKKMNAYNKK 126
E+ + M Y K+
Sbjct: 123 EFHRAMTEYTKR 134
>sp|P07746|HMGT_ONCMY High mobility group-T protein OS=Oncorhynchus mykiss PE=2 SV=2
Length = 204
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPY 105
KK KDPN PKRP SAFF+F +FR K E P ++ + V K G KW +++ +K PY
Sbjct: 85 KKRFKDPNAPKRPSSAFFIFCADFRPQVKGETPGLS-IGDVAKKLGEKWNNLTAEDKVPY 143
Query: 106 ESKAEKLKSEYGKKMNAYNKK 126
E KA +LK +Y K + AY K
Sbjct: 144 EKKASRLKEKYEKDITAYRNK 164
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTA-VSAVGKAAGGKWKSMSPAEKAPYESK 108
KDP KP+ S++ F++ R+ KK++P + S K +WK+MS EK +E
Sbjct: 3 KDPRKPRGKMSSYAYFVQTRREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDL 62
Query: 109 AEKLKSEYGKKMNAY 123
A+ K Y ++M +Y
Sbjct: 63 AKLDKVRYEREMRSY 77
>sp|P40618|HMGB3_CHICK High mobility group protein B3 OS=Gallus gallus GN=HMGB3 PE=2 SV=2
Length = 202
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAE 110
DPN PKRPPSAFF+F EFR K NP ++ + V K G W ++S EK PY +KA
Sbjct: 89 DPNAPKRPPSAFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLSDGEKQPYNNKAA 147
Query: 111 KLKSEYGKKMNAYNKK 126
KLK +Y K + Y K
Sbjct: 148 KLKEKYEKDVADYKSK 163
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 60 SAFFVFLEEFRKTFKKENPNVTA-VSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGK 118
SA+ F++ R+ KK+NP V + K +WK+MS EKA ++ A+ K Y +
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMAKADKVRYDR 73
Query: 119 KMNAY 123
+M Y
Sbjct: 74 EMKDY 78
>sp|P36194|HMGB1_CHICK High mobility group protein B1 OS=Gallus gallus GN=HMGB1 PE=2 SV=2
Length = 201
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAE 110
DPN PKRPPS FF+F EFR K NP ++ + V K G W ++S EK PY +KA
Sbjct: 88 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLSDGEKQPYNNKAA 146
Query: 111 KLKSEYGKKMNAYNKK 126
KLK +Y K + Y K
Sbjct: 147 KLKEKYEKDVADYKSK 162
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 60 SAFFVFLEEFRKTFKKENPNVTA-VSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGK 118
SA+ F++ R+ KK NP V + K +WK+MS EKA ++ A+ K Y +
Sbjct: 14 SAYAFFVQTCREEHKK-NPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMAKADKVRYDR 72
Query: 119 KMNAY 123
+M Y
Sbjct: 73 EMKDY 77
>sp|Q32L31|HMGB3_BOVIN High mobility group protein B3 OS=Bos taurus GN=HMGB3 PE=2 SV=2
Length = 200
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAE 110
DPN PKRPPS FF+F EFR K NP ++ + V K G W ++S +EK PY +KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSANPGIS-IGDVAKKLGEMWNNLSDSEKQPYINKAA 147
Query: 111 KLKSEYGKKMNAYNKK 126
KLK +Y K + Y K
Sbjct: 148 KLKEKYEKDVADYKSK 163
Score = 35.8 bits (81), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 60 SAFFVFLEEFRKTFKKENPNVTA-VSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGK 118
SA+ F++ R+ KK+NP V + K +WK+MS EK+ ++ A+ K Y +
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 119 KMNAY 123
+M Y
Sbjct: 74 EMKDY 78
>sp|Q7S045|NHP6_NEUCR Non-histone chromosomal protein 6 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=nhp-6 PE=3 SV=1
Length = 103
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
Query: 38 SKRQGKREKK-AKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKS 96
SK GK EK+ AKKDPN PKR SA+ F E R+ ++ENP V+ VGK G +WK+
Sbjct: 8 SKTTGKVEKRRAKKDPNAPKRGLSAYMFFANEQRENVREENPGVS-FGQVGKILGERWKA 66
Query: 97 MSPAEKAPYESKAEKLKSEYGKKMNAYN 124
+S ++APYE+KA K Y + AYN
Sbjct: 67 LSDKQRAPYEAKAAADKKRYEDEKQAYN 94
>sp|O54879|HMGB3_MOUSE High mobility group protein B3 OS=Mus musculus GN=Hmgb3 PE=2 SV=3
Length = 200
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAE 110
DPN PKRPPS FF+F EFR K NP ++ + V K G W ++S EK PY +KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLSDNEKQPYVTKAA 147
Query: 111 KLKSEYGKKMNAYNKK 126
KLK +Y K + Y K
Sbjct: 148 KLKEKYEKDVADYKSK 163
Score = 36.6 bits (83), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 60 SAFFVFLEEFRKTFKKENPNVTA-VSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGK 118
SA+ F++ R+ KK+NP V + K +WK+MS EK+ ++ A+ K Y +
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMAKADKVRYDR 73
Query: 119 KMNAY 123
+M Y
Sbjct: 74 EMKDY 78
>sp|Q8WW32|HMGB4_HUMAN High mobility group protein B4 OS=Homo sapiens GN=HMGB4 PE=2 SV=2
Length = 186
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 62/103 (60%), Gaps = 7/103 (6%)
Query: 30 ATAKLDSGSKRQ------GKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAV 83
A AKLD ++ GKR+K+ K+DP +P+RPPS+F +F ++ K+ENPN + V
Sbjct: 62 ALAKLDKARYQEEMMNYVGKRKKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVV 121
Query: 84 SAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNKK 126
V KA G W + + EK PYE + L+++Y +++ Y K+
Sbjct: 122 Q-VAKATGKMWSTATDLEKHPYEQRVALLRAKYFEELELYRKQ 163
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 54 KPKRPPSAFFVFLEEFRKTFKKENPNV-TAVSAVGKAAGGKWKSMSPAEKAPYESKAEKL 112
KPK S++ FL +R FK++ PN + KW+S+S EKA YE+ A+
Sbjct: 8 KPKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLD 67
Query: 113 KSEYGKKMNAY 123
K+ Y ++M Y
Sbjct: 68 KARYQEEMMNY 78
>sp|O15347|HMGB3_HUMAN High mobility group protein B3 OS=Homo sapiens GN=HMGB3 PE=1 SV=4
Length = 200
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAE 110
DPN PKRPPS FF+F EFR K NP ++ + V K G W +++ +EK PY +KA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLNDSEKQPYITKAA 147
Query: 111 KLKSEYGKKMNAYNKK 126
KLK +Y K + Y K
Sbjct: 148 KLKEKYEKDVADYKSK 163
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 60 SAFFVFLEEFRKTFKKENPNVTA-VSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGK 118
SA+ F++ R+ KK+NP V + K +WK+MS EK+ ++ A+ K Y +
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 119 KMNAY 123
+M Y
Sbjct: 74 EMKDY 78
>sp|P0C6E5|HMG3M_HUMAN Putative high mobility group protein B3-like protein OS=Homo
sapiens PE=5 SV=1
Length = 187
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 28 KAATAKLDSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVG 87
KA D K G + KKDPN PKRPPS FF+F EF K NP + + V
Sbjct: 65 KADKVHYDQEIKDYGPAKGGKKKDPNAPKRPPSGFFLFCSEFCPKSKSTNPGIP-IGDVA 123
Query: 88 KAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNKK 126
K G WK+++ +EK PY ++A KLK +Y K + Y K
Sbjct: 124 KKLGEMWKNLNDSEKQPYITQAAKLKEKYEKDVAVYKSK 162
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 60 SAFFVFLEEFRKTFKKENPNV-TAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGK 118
SA+ F++ R+ KK+NP V + K +WK+MS EK+ + A+ K Y +
Sbjct: 14 SAYAFFVQTCREEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKFNELAKADKVHYDQ 73
Query: 119 KMNAY 123
++ Y
Sbjct: 74 EIKDY 78
>sp|P11633|NHP6B_YEAST Non-histone chromosomal protein 6B OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NHP6B PE=1 SV=3
Length = 99
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 43 KREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEK 102
KR + KKDPN PKR SA+ F E R + ENP+VT VG+ G +WK+++ EK
Sbjct: 15 KRTTRRKKDPNAPKRGLSAYMFFANENRDIVRSENPDVT-FGQVGRILGERWKALTAEEK 73
Query: 103 APYESKAEKLKSEYGKKMNAYN 124
PYESKA+ K Y + YN
Sbjct: 74 QPYESKAQADKKRYESEKELYN 95
>sp|Q4IQX3|NHP6_GIBZE Non-histone chromosomal protein 6 OS=Gibberella zeae (strain PH-1 /
ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=NHP6 PE=3
SV=1
Length = 101
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPY 105
K+AKKDPN PKR SA+ F E R+ ++ENP ++ VGK G +WK+++ ++APY
Sbjct: 15 KRAKKDPNAPKRGLSAYMFFANEQRENVREENPGIS-FGQVGKLLGERWKALNEKQRAPY 73
Query: 106 ESKAEKLKSEYGKKMNAYNKKQ 127
E+KA K Y + AYN Q
Sbjct: 74 EAKAAADKKRYEDEKQAYNADQ 95
>sp|O04235|SSRP1_VICFA FACT complex subunit SSRP1 OS=Vicia faba GN=SSRP1 PE=2 SV=1
Length = 642
Score = 66.6 bits (161), Expect = 4e-11, Method: Composition-based stats.
Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAE 110
DPN PKR S F F + R+ KK NP ++ + VG+ G KWK++S EK PYE+KA+
Sbjct: 554 DPNAPKRALSGFMFFSQMERENLKKTNPGIS-FTDVGRVLGEKWKNLSAEEKEPYEAKAQ 612
Query: 111 KLKSEYGKKMNAYNKKQVTNL 131
K Y +++ Y Q N+
Sbjct: 613 ADKKRYKDEISGYKNPQPMNV 633
>sp|P0CO24|NHP6_CRYNJ Non-histone chromosomal protein 6 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=NHP6 PE=3 SV=1
Length = 116
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPY 105
K+ KKDPNKPKR SA+ F++++R+ K ENP T VGK G KW+ M+ EK PY
Sbjct: 19 KRTKKDPNKPKRALSAYMFFVQDYRERIKTENPEAT-FGDVGKLLGIKWREMNENEKKPY 77
Query: 106 ESKA 109
E+KA
Sbjct: 78 EAKA 81
>sp|P0CO25|NHP6_CRYNB Non-histone chromosomal protein 6 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=NHP6 PE=3 SV=1
Length = 116
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPY 105
K+ KKDPNKPKR SA+ F++++R+ K ENP T VGK G KW+ M+ EK PY
Sbjct: 19 KRTKKDPNKPKRALSAYMFFVQDYRERIKTENPEAT-FGDVGKLLGIKWREMNENEKKPY 77
Query: 106 ESKA 109
E+KA
Sbjct: 78 EAKA 81
>sp|Q6P8W9|HMGB4_MOUSE High mobility group protein B4 OS=Mus musculus GN=Hmgb4 PE=2 SV=1
Length = 181
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 59/100 (59%), Gaps = 7/100 (7%)
Query: 30 ATAKLDSGSKRQ------GKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAV 83
A A+LD +Q GKR K+ K+DP P++PPS+F +F + K+ENP+ T V
Sbjct: 62 ALAELDKARYQQEMMNYIGKRRKRRKRDPKAPRKPPSSFLLFSRDHYAMLKQENPDWTVV 121
Query: 84 SAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAY 123
V KAAG W + AEK PYE KA ++++Y ++ AY
Sbjct: 122 Q-VAKAAGKMWSTTDEAEKKPYEQKAALMRAKYFEEQEAY 160
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNV-TAVSAVGKAAGGKWKSMSPAEKAPYES 107
+KD +PK S++ F+ FR FK++ PN + KW+S+S EKA YE+
Sbjct: 3 EKDQLRPKVNVSSYIHFMLNFRNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKYEA 62
Query: 108 KAEKLKSEYGKKMNAY 123
AE K+ Y ++M Y
Sbjct: 63 LAELDKARYQQEMMNY 78
>sp|Q6CVH3|NHP6_KLULA Non-histone chromosomal protein 6 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=NHP6 PE=3 SV=1
Length = 93
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 43 KREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEK 102
K+ ++ KKDPN PKR SA+ F E R + ENP +T VG+ G KWK+++ EK
Sbjct: 6 KKTQRKKKDPNAPKRALSAYMFFANENRDIVRAENPGIT-FGQVGRILGEKWKALNEDEK 64
Query: 103 APYESKAEKLKSEYGKKMNAY 123
APYE+KAE K Y + Y
Sbjct: 65 APYEAKAEADKKRYESEKELY 85
>sp|P11632|NHP6A_YEAST Non-histone chromosomal protein 6A OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NHP6A PE=1 SV=1
Length = 93
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAE 110
DPN PKR SA+ F E R + ENP++T VGK G KWK+++P EK PYE+KA+
Sbjct: 17 DPNAPKRALSAYMFFANENRDIVRSENPDIT-FGQVGKKLGEKWKALTPEEKQPYEAKAQ 75
Query: 111 KLKSEYGKKMNAYN 124
K Y + YN
Sbjct: 76 ADKKRYESEKELYN 89
>sp|Q32L34|HMGB4_BOVIN High mobility group protein B4 OS=Bos taurus GN=HMGB4 PE=2 SV=1
Length = 194
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 62/100 (62%), Gaps = 7/100 (7%)
Query: 30 ATAKLDSGSKRQ------GKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAV 83
A AKLD ++ G+R+K+ K+DP+ P+RPPS+F +F ++ K ENP+ + V
Sbjct: 62 ALAKLDKARYQEEMMNYFGRRKKRRKRDPHAPRRPPSSFLLFCQDHYAQLKSENPSWSVV 121
Query: 84 SAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAY 123
V KA+G W + + +K PYE +A L+++Y ++++ Y
Sbjct: 122 Q-VAKASGKMWSAKTDVDKQPYEQRAALLRAKYREELSVY 160
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNV-TAVSAVGKAAGGKWKSMSPAEKAPYES 107
K+D KPK S++ FL +R FK++ PN + KW+S+S EKA YE+
Sbjct: 3 KRDQLKPKANVSSYIHFLLNYRNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKYEA 62
Query: 108 KAEKLKSEYGKKMNAY 123
A+ K+ Y ++M Y
Sbjct: 63 LAKLDKARYQEEMMNY 78
>sp|P26584|HMGB2_CHICK High mobility group protein B2 OS=Gallus gallus GN=HMGB2 PE=2 SV=2
Length = 207
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAE 110
DPN PKRPPSAFF+F E R K ++P ++ + K G W +K PYE KA
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKNDHPGLS-IGDTAKKLGEMWSEQLAKDKQPYEQKAA 149
Query: 111 KLKSEYGKKMNAYNKKQVTN 130
KLK +Y K + AY K ++
Sbjct: 150 KLKEKYEKDIAAYRAKSKSD 169
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTA-VSAVGKAAGGKWKSMSPAEKAPYES 107
K DPNKP+ S++ F++ R+ KK++P+ + + + +WK+MS EK +E
Sbjct: 3 KGDPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKGKFEE 62
Query: 108 KAEKLKSEYGKKMNAY 123
A+ K+ Y ++M Y
Sbjct: 63 MAKGDKARYDREMKNY 78
>sp|Q4WY33|NHP6_ASPFU Non-histone chromosomal protein 6 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=nhp6
PE=3 SV=1
Length = 104
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 36 SGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWK 95
+ ++ + KR ++ KKDPN PKR SA+ F E R ++ENP ++ VGK G +WK
Sbjct: 6 TSTRTKTKRVERKKKDPNAPKRGLSAYMFFANENRDKVREENPGIS-FGQVGKMLGERWK 64
Query: 96 SMSPAEKAPYESKAEKLKSEYGKKMNAYNKKQ 127
++S +E+ PYE KA K Y + +YN Q
Sbjct: 65 ALSDSERRPYEEKAAADKKRYEDEKASYNAAQ 96
>sp|P40632|NHP1_BABBO High mobility group protein homolog NHP1 OS=Babesia bovis PE=1 SV=1
Length = 97
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 55/94 (58%), Gaps = 2/94 (2%)
Query: 37 GSKRQG-KREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVT-AVSAVGKAAGGKW 94
S R G +R +KAKKDPN PKR S++ F +E R ENP + V+A+GK G W
Sbjct: 4 ASDRTGVRRPRKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAW 63
Query: 95 KSMSPAEKAPYESKAEKLKSEYGKKMNAYNKKQV 128
++S EK PYE +++ + Y ++ Y +++V
Sbjct: 64 NALSDEEKKPYERMSDEDRVRYEREKAEYAQRKV 97
>sp|Q4H2R2|SSRP1_CIOIN FACT complex subunit SSRP1 OS=Ciona intestinalis GN=SSRP1 PE=2 SV=1
Length = 704
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPY 105
K+ KKDPN PKRP SA+F++L E R FK EN + +V+ + K AG +WK + P EK +
Sbjct: 545 KRKKKDPNAPKRPQSAYFLWLNENRGRFKAENKGI-SVTELTKLAGKEWKKIDPDEKQKF 603
Query: 106 ESKAEKLKSEYGKKMNAY 123
E +K K ++ M Y
Sbjct: 604 ERMYQKSKVKFDAAMKEY 621
>sp|P52925|HMGB2_RAT High mobility group protein B2 OS=Rattus norvegicus GN=Hmgb2 PE=2
SV=2
Length = 210
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 53 NKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKL 112
N PKRPPSAFF+F E R K E+P ++ + K G W S +K PYE KA KL
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGLS-IGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 113 KSEYGKKMNAYNKK 126
K +Y K + AY K
Sbjct: 152 KEKYEKDIAAYRAK 165
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTA-VSAVGKAAGGKWKSMSPAEKAPYES 107
K DPNKP+ S++ F++ R+ KK++P+ + + K +WK+MS EK+ +E
Sbjct: 3 KGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFED 62
Query: 108 KAEKLKSEYGKKMNAY 123
A+ K+ Y ++M Y
Sbjct: 63 LAKSDKARYDREMKNY 78
>sp|P26583|HMGB2_HUMAN High mobility group protein B2 OS=Homo sapiens GN=HMGB2 PE=1 SV=2
Length = 209
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 53 NKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKL 112
N PKRPPSAFF+F E R K E+P ++ + K G W S +K PYE KA KL
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGLS-IGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 113 KSEYGKKMNAYNKK 126
K +Y K + AY K
Sbjct: 152 KEKYEKDIAAYRAK 165
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTA-VSAVGKAAGGKWKSMSPAEKAPYES 107
K DPNKP+ S++ F++ R+ KK++P+ + + K +WK+MS EK+ +E
Sbjct: 3 KGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFED 62
Query: 108 KAEKLKSEYGKKMNAY 123
A+ K+ Y ++M Y
Sbjct: 63 MAKSDKARYDREMKNY 78
>sp|P40673|HMGB2_BOVIN High mobility group protein B2 OS=Bos taurus GN=HMGB2 PE=1 SV=3
Length = 209
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 53 NKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKL 112
N PKRPPSAFF+F E R K E+P ++ + K G W S +K PYE KA KL
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGLS-IGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 113 KSEYGKKMNAYNKK 126
K +Y K + AY K
Sbjct: 152 KEKYEKDIAAYRAK 165
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTA-VSAVGKAAGGKWKSMSPAEKAPYES 107
K DPNKP+ S++ F++ R+ KK++P+ + + K +WK+MS EK+ +E
Sbjct: 3 KGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFED 62
Query: 108 KAEKLKSEYGKKMNAY 123
A+ K+ Y ++M Y
Sbjct: 63 MAKSDKARYDREMKNY 78
>sp|P17741|HMGB2_PIG High mobility group protein B2 OS=Sus scrofa GN=HMGB2 PE=1 SV=2
Length = 210
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 53 NKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKL 112
N PKRPPSAFF+F E R K E+P ++ + K G W S +K PYE KA KL
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGLS-IGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 113 KSEYGKKMNAY 123
K +Y K + AY
Sbjct: 152 KEKYEKDIAAY 162
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTA-VSAVGKAAGGKWKSMSPAEKAPYES 107
K DPNKP+ S++ F++ R+ KK++P+ + + K +WK+MS EK+ +E
Sbjct: 3 KGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFED 62
Query: 108 KAEKLKSEYGKKMNAY 123
A+ K+ Y ++M Y
Sbjct: 63 MAKSDKARYDREMKNY 78
>sp|Q4PBZ9|NHP6_USTMA Non-histone chromosomal protein 6 OS=Ustilago maydis (strain 521 /
FGSC 9021) GN=NHP6 PE=3 SV=2
Length = 99
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 43 KREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEK 102
KR KAKKDP+ PKRP SA+ F ++ R+ K NP VG+ G KWK MS AEK
Sbjct: 16 KRTTKAKKDPDAPKRPLSAYMFFSQDQRERVKNANPEA-GFGEVGRLLGAKWKEMSEAEK 74
Query: 103 APYESKAEKLKSEYGKKMNAYNKKQ 127
PY A + K+ + AYNK++
Sbjct: 75 KPYNDMANRDKARAEAEKAAYNKRR 99
>sp|Q75B82|NHP6_ASHGO Non-histone chromosomal protein 6 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=NHP6
PE=3 SV=1
Length = 94
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAE 110
DPN PKR SA+ F E R + ENP ++ VG+ G KWK++S EK PYE+KAE
Sbjct: 17 DPNAPKRAMSAYMFFANENRDIVRAENPGIS-FGQVGRVLGEKWKALSDDEKQPYEAKAE 75
Query: 111 KLKSEYGKKMNAYN 124
K Y + YN
Sbjct: 76 ADKKRYESEKELYN 89
>sp|Q9W602|SSRP1_XENLA FACT complex subunit SSRP1 OS=Xenopus laevis GN=ssrp1 PE=1 SV=1
Length = 693
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 43 KREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEK 102
K E K KDP PKRP SA+ ++L R+ K ENP + +++ + K AG WK+MS +K
Sbjct: 529 KPEAKKTKDPGAPKRPMSAYMLWLNASREKIKSENPGI-SITDLSKKAGEIWKNMSRDKK 587
Query: 103 APYESKAEKLKSEYGKKMNAYN 124
++ +AE+ K +Y K M YN
Sbjct: 588 EEWDRRAEEAKRDYEKAMKEYN 609
>sp|P30681|HMGB2_MOUSE High mobility group protein B2 OS=Mus musculus GN=Hmgb2 PE=1 SV=3
Length = 210
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 53 NKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKL 112
N PKRPPSAFF+F E R K E+P ++ + K G W S +K PYE KA KL
Sbjct: 93 NAPKRPPSAFFLFCSENRPKIKIEHPGLS-IGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 113 KSEYGKKMNAYNKK 126
K +Y K + AY K
Sbjct: 152 KEKYEKDIAAYRAK 165
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTA-VSAVGKAAGGKWKSMSPAEKAPYES 107
K DPNKP+ S++ F++ R+ KK++P+ + + K +WK+MS EK+ +E
Sbjct: 3 KGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFED 62
Query: 108 KAEKLKSEYGKKMNAY 123
A+ K+ Y ++M Y
Sbjct: 63 LAKSDKARYDREMKNY 78
>sp|Q6BRB4|NHP6_DEBHA Non-histone chromosomal protein 6 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=NHP6 PE=3 SV=1
Length = 92
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAE 110
DP+ PKR SA+ F E R + ENP ++ VGK G KWK+++P +K PYE+KA+
Sbjct: 15 DPDAPKRSLSAYMFFANENRDIVRAENPGIS-FGQVGKLLGEKWKALTPEDKIPYENKAD 73
Query: 111 KLKSEYGKKMNAYNKK 126
K Y K+ Y KK
Sbjct: 74 TDKKRYEKEKAEYAKK 89
>sp|Q08943|SSRP1_MOUSE FACT complex subunit SSRP1 OS=Mus musculus GN=Ssrp1 PE=1 SV=2
Length = 708
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 62/108 (57%), Gaps = 7/108 (6%)
Query: 20 NDRKVGKR----KAATAKLDSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKK 75
+DR+ KR +A AK D S+R+ KK K DPN PKRP SA+ ++L R+ K
Sbjct: 510 SDREEKKREQLKRAKMAK-DRKSRRKSSEAKKGK-DPNAPKRPMSAYMLWLNASREKIKS 567
Query: 76 ENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAY 123
++P + +++ + K AG WK MS +K ++ KAE + EY K M Y
Sbjct: 568 DHPGI-SITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEY 614
>sp|Q6CC79|NHP6_YARLI Non-histone chromosomal protein 6 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=NHP6 PE=3 SV=1
Length = 103
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAE 110
DPN PKR SA+ F + R + +NP + A VGKA G KWK+++ AEK PYE KA
Sbjct: 21 DPNAPKRALSAYMFFANDNRDAIRADNPGI-AFGQVGKALGEKWKTLTDAEKVPYEEKAT 79
Query: 111 KLKSEYGKKMNAY 123
K Y + AY
Sbjct: 80 ADKKRYEDEKAAY 92
>sp|Q04678|SSRP1_CHICK FACT complex subunit SSRP1 OS=Gallus gallus GN=SSRP1 PE=2 SV=2
Length = 706
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 40 RQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSP 99
R+ + E K KDPN PKRP SA+ ++L R+ K ++P ++ ++ + K AG WK+MS
Sbjct: 530 RKKQVESKKGKDPNAPKRPMSAYMLWLNANREKIKSDHPGIS-ITDLSKKAGELWKAMSK 588
Query: 100 AEKAPYESKAEKLKSEYGKKMNAYN 124
+K ++ KAE K +Y K M Y+
Sbjct: 589 EKKEEWDRKAEDAKRDYEKAMKEYS 613
>sp|P87057|NHP6_SCHPO Non-histone chromosomal protein 6 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=nhp6 PE=3 SV=1
Length = 108
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESK 108
KKDPN PKR SAF F E R+ K +NP+ T +G G +WK ++ E+ PYE K
Sbjct: 10 KKDPNTPKRNMSAFMFFSIENREKMKTDNPDAT-FGQLGSLLGKRWKELTSTEREPYEEK 68
Query: 109 AEKLKSEYGKKMNAYNKK 126
A + K Y ++ Y+ K
Sbjct: 69 ARQDKERYERERKEYDTK 86
>sp|P12682|HMGB1_PIG High mobility group protein B1 OS=Sus scrofa GN=HMGB1 PE=2 SV=3
Length = 215
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPY 105
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W + + +K PY
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMWNNTAADDKHPY 144
Query: 106 ESKAEKLKSEYGKKMNAYNKK 126
E KA KLK +Y K + AY K
Sbjct: 145 EKKAAKLKEKYEKDIAAYRAK 165
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTA-VSAVGKAAGGKWKSMSPAEKAPYES 107
K DP KP+ S++ F++ R+ KK++P+ + S K +WK+MS EK +E
Sbjct: 3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62
Query: 108 KAEKLKSEYGKKMNAY 123
A+ K+ Y ++M Y
Sbjct: 63 MAKADKARYEREMKTY 78
>sp|P63159|HMGB1_RAT High mobility group protein B1 OS=Rattus norvegicus GN=Hmgb1 PE=1
SV=2
Length = 215
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPY 105
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W + + +K PY
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMWNNTAADDKQPY 144
Query: 106 ESKAEKLKSEYGKKMNAYNKK 126
E KA KLK +Y K + AY K
Sbjct: 145 EKKAAKLKEKYEKDIAAYRAK 165
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTA-VSAVGKAAGGKWKSMSPAEKAPYES 107
K DP KP+ S++ F++ R+ KK++P+ + S K +WK+MS EK +E
Sbjct: 3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62
Query: 108 KAEKLKSEYGKKMNAY 123
A+ K+ Y ++M Y
Sbjct: 63 MAKADKARYEREMKTY 78
>sp|A9RA84|HMGB1_PAPAN High mobility group protein B1 OS=Papio anubis GN=HMGB1 PE=3 SV=1
Length = 215
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPY 105
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W + + +K PY
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMWNNTAADDKQPY 144
Query: 106 ESKAEKLKSEYGKKMNAYNKK 126
E KA KLK +Y K + AY K
Sbjct: 145 EKKAAKLKEKYEKDIAAYRAK 165
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTA-VSAVGKAAGGKWKSMSPAEKAPYES 107
K DP KP+ S++ F++ R+ KK++P+ + S K +WK+MS EK +E
Sbjct: 3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62
Query: 108 KAEKLKSEYGKKMNAY 123
A+ K+ Y ++M Y
Sbjct: 63 MAKADKARYEREMKTY 78
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.126 0.351
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,126,576
Number of Sequences: 539616
Number of extensions: 2036153
Number of successful extensions: 9923
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 281
Number of HSP's that attempted gapping in prelim test: 8799
Number of HSP's gapped (non-prelim): 937
length of query: 147
length of database: 191,569,459
effective HSP length: 106
effective length of query: 41
effective length of database: 134,370,163
effective search space: 5509176683
effective search space used: 5509176683
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)