Query 032101
Match_columns 147
No_of_seqs 162 out of 1153
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 15:28:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032101.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032101hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2co9_A Thymus high mobility gr 99.9 1.3E-25 4.3E-30 157.4 12.5 88 43-131 6-93 (102)
2 2eqz_A High mobility group pro 99.9 1.7E-25 5.8E-30 152.0 11.0 81 44-124 5-86 (86)
3 1k99_A Upstream binding factor 99.9 2.9E-25 9.8E-30 155.0 8.8 83 46-129 2-84 (99)
4 1hme_A High mobility group pro 99.9 4.4E-25 1.5E-29 146.7 8.0 76 49-125 1-76 (77)
5 1cg7_A Protein (NON histone pr 99.9 9E-26 3.1E-30 155.6 4.7 84 43-127 9-92 (93)
6 2lhj_A High mobility group pro 99.9 1.5E-25 5.2E-30 155.5 5.3 88 40-127 8-96 (97)
7 2crj_A SWI/SNF-related matrix- 99.9 3E-24 1E-28 147.6 10.8 77 49-126 2-78 (92)
8 1aab_A High mobility group pro 99.9 5.3E-25 1.8E-29 148.4 5.7 79 49-127 2-81 (83)
9 2cs1_A PMS1 protein homolog 1; 99.9 4.2E-24 1.4E-28 146.9 9.5 79 50-129 3-81 (92)
10 1wgf_A Upstream binding factor 99.9 3.6E-25 1.2E-29 151.8 4.1 79 43-122 9-87 (90)
11 2e6o_A HMG box-containing prot 99.9 3.1E-24 1.1E-28 146.1 7.8 79 45-124 8-86 (87)
12 3nm9_A HMG-D, high mobility gr 99.9 1.1E-23 3.8E-28 138.9 9.6 72 52-126 1-72 (73)
13 1hry_A Human SRY; DNA, DNA-bin 99.9 4.7E-24 1.6E-28 141.3 6.6 75 51-126 1-75 (76)
14 1ckt_A High mobility group 1 p 99.9 3.3E-23 1.1E-27 135.4 8.8 70 54-123 1-71 (71)
15 1wxl_A Single-strand recogniti 99.9 2.9E-23 1E-27 136.8 7.9 72 52-126 1-72 (73)
16 1j46_A SRY, sex-determining re 99.9 5.1E-23 1.7E-27 139.4 8.5 76 51-127 1-76 (85)
17 2gzk_A Sex-determining region 99.9 1.5E-22 5E-27 151.0 10.9 79 46-125 80-158 (159)
18 1wz6_A HMG-box transcription f 99.9 1.6E-23 5.5E-28 140.8 4.8 76 50-126 3-78 (82)
19 1l8y_A Upstream binding factor 99.9 1.9E-22 6.5E-27 139.0 9.5 78 52-131 2-79 (91)
20 4euw_A Transcription factor SO 99.9 1.4E-22 5E-27 142.8 8.4 78 48-126 23-100 (106)
21 1gt0_D Transcription factor SO 99.9 1.5E-22 5.2E-27 135.4 7.9 74 53-127 1-74 (80)
22 4a3n_A Transcription factor SO 99.9 7.9E-23 2.7E-27 133.4 6.1 71 53-124 1-71 (71)
23 3f27_D Transcription factor SO 99.9 1.3E-22 4.6E-27 136.4 7.3 75 51-126 3-77 (83)
24 1v64_A Nucleolar transcription 99.9 1.1E-22 3.7E-27 144.1 6.5 81 46-131 8-89 (108)
25 2yrq_A High mobility group pro 99.9 5.6E-22 1.9E-26 149.9 10.6 80 46-126 93-172 (173)
26 2lef_A LEF-1 HMG, protein (lym 99.9 4.1E-22 1.4E-26 135.1 8.4 74 53-127 1-74 (86)
27 3u2b_C Transcription factor SO 99.9 3.6E-22 1.2E-26 133.0 7.0 73 53-126 1-73 (79)
28 1i11_A Transcription factor SO 99.9 3.3E-22 1.1E-26 134.1 6.6 74 52-126 2-75 (81)
29 3fgh_A Transcription factor A, 99.9 1.2E-21 4.3E-26 126.9 7.4 66 53-123 1-66 (67)
30 1v63_A Nucleolar transcription 99.8 7.2E-21 2.5E-25 133.1 10.4 79 50-131 4-82 (101)
31 2yrq_A High mobility group pro 99.8 4.3E-21 1.5E-25 145.1 9.7 82 45-126 6-88 (173)
32 2d7l_A WD repeat and HMG-box D 99.8 3.1E-21 1.1E-25 130.2 6.8 63 50-112 1-63 (81)
33 3tmm_A Transcription factor A, 99.8 3.2E-20 1.1E-24 147.3 7.8 80 48-128 35-114 (238)
34 3tq6_A Transcription factor A, 99.8 6.6E-20 2.3E-24 143.4 8.5 77 51-128 6-82 (214)
35 2cto_A Novel protein; high mob 99.8 2.6E-20 8.7E-25 128.9 4.3 70 49-121 5-77 (93)
36 2yuk_A Myeloid/lymphoid or mix 99.8 7.6E-21 2.6E-25 130.8 -0.2 69 46-118 14-83 (90)
37 3tq6_A Transcription factor A, 99.8 3E-20 1E-24 145.4 2.0 78 46-128 106-183 (214)
38 3tmm_A Transcription factor A, 99.8 3.3E-20 1.1E-24 147.2 1.2 78 46-128 138-215 (238)
39 2gzk_A Sex-determining region 99.7 1E-17 3.4E-22 124.7 7.6 74 52-126 2-75 (159)
40 2qgu_A Probable signal peptide 74.6 2.3 7.7E-05 32.3 3.2 48 78-126 70-119 (211)
41 2yua_A Williams-beuren syndrom 25.6 1.3E+02 0.0045 19.2 4.9 39 67-105 36-78 (99)
42 3u65_B TP33 protein; tetratric 23.3 1.1E+02 0.0039 23.9 4.9 23 91-113 234-256 (328)
43 3o39_A Periplasmic protein rel 22.9 1.2E+02 0.004 20.4 4.2 27 85-111 79-105 (108)
44 3itf_A Periplasmic adaptor pro 22.7 1.3E+02 0.0043 21.4 4.5 32 85-116 107-138 (145)
45 2o37_A Protein SIS1; HSP40, J- 20.5 1.2E+02 0.004 19.2 3.8 39 67-105 27-66 (92)
No 1
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.93 E-value=1.3e-25 Score=157.36 Aligned_cols=88 Identities=35% Similarity=0.616 Sum_probs=82.2
Q ss_pred ccccccCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHH
Q 032101 43 KREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNA 122 (147)
Q Consensus 43 kk~kk~~kdp~~PKRP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~lge~Wk~Ls~eeK~~Y~~~A~~~k~~y~k~~~~ 122 (147)
.+++++++||+.|+||+||||||++++|..|+.+||+++ +.+|+++||++|++|++++|++|.++|..++++|..+|.+
T Consensus 6 ~~~kk~~kdp~~pKrP~say~lF~~~~r~~i~~~~P~~~-~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~ 84 (102)
T 2co9_A 6 SGKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNAT-FGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQLAA 84 (102)
T ss_dssp CCSCSSCCCCCSCCCCCCHHHHTHHHHHHHHHHHCTTSC-HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567799999999999999999999999999999997 8999999999999999999999999999999999999999
Q ss_pred HhhhCCCCC
Q 032101 123 YNKKQVTNL 131 (147)
Q Consensus 123 Y~~~~~~~~ 131 (147)
|+.+.....
T Consensus 85 Y~~~~~~~~ 93 (102)
T 2co9_A 85 YRASLVSKS 93 (102)
T ss_dssp HHHHHTSSC
T ss_pred HHhhccccc
Confidence 999877654
No 2
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.93 E-value=1.7e-25 Score=152.03 Aligned_cols=81 Identities=35% Similarity=0.586 Sum_probs=75.9
Q ss_pred cccccCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCC-cHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHH
Q 032101 44 REKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVT-AVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNA 122 (147)
Q Consensus 44 k~kk~~kdp~~PKRP~sAy~lF~~e~r~~ik~e~P~~~-~~~eisk~lge~Wk~Ls~eeK~~Y~~~A~~~k~~y~k~~~~ 122 (147)
+.++.++||++|+||+||||+|++++|..|+.+||+++ +|.+|+++||++|++||+++|.+|++.|..++++|..+|.+
T Consensus 5 ~~~~~~kdp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~ 84 (86)
T 2eqz_A 5 SSGMAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKD 84 (86)
T ss_dssp CSSCSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456799999999999999999999999999999997 37999999999999999999999999999999999999999
Q ss_pred Hh
Q 032101 123 YN 124 (147)
Q Consensus 123 Y~ 124 (147)
|+
T Consensus 85 Y~ 86 (86)
T 2eqz_A 85 YG 86 (86)
T ss_dssp HC
T ss_pred cC
Confidence 94
No 3
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=99.92 E-value=2.9e-25 Score=154.96 Aligned_cols=83 Identities=25% Similarity=0.482 Sum_probs=78.4
Q ss_pred cccCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 032101 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNK 125 (147)
Q Consensus 46 kk~~kdp~~PKRP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~lge~Wk~Ls~eeK~~Y~~~A~~~k~~y~k~~~~Y~~ 125 (147)
+++++||++|+||+||||||++++|..|+.+||+++ +.+|+++||++|++||+++|++|.+.|..++++|..+|.+|..
T Consensus 2 kkk~kdp~~PKRP~saf~lF~~~~r~~ik~~~P~~~-~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~Y~~e~~~y~~ 80 (99)
T 1k99_A 2 KKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFRE 80 (99)
T ss_dssp CCCCSSSSSCCCSCCHHHHHHHHHHHHHHTTCTTSC-SHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHGGGGG
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999998 6999999999999999999999999999999999999999998
Q ss_pred hCCC
Q 032101 126 KQVT 129 (147)
Q Consensus 126 ~~~~ 129 (147)
....
T Consensus 81 ~~P~ 84 (99)
T 1k99_A 81 DHPD 84 (99)
T ss_dssp CCCC
T ss_pred HCCC
Confidence 7543
No 4
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=99.92 E-value=4.4e-25 Score=146.66 Aligned_cols=76 Identities=47% Similarity=0.873 Sum_probs=73.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 032101 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNK 125 (147)
Q Consensus 49 ~kdp~~PKRP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~lge~Wk~Ls~eeK~~Y~~~A~~~k~~y~k~~~~Y~~ 125 (147)
++||+.|+||+||||||++++|..|+.+||+++ +.+|+++||++|++||+++|.+|.+.|..++++|..+|.+|+.
T Consensus 1 kkdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 76 (77)
T 1hme_A 1 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 76 (77)
T ss_dssp CCCSSCCCCCCCTTHHHHHHHHHHHHHHCTTCC-HHHHHHHHHHHHHHSCGGGSHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 479999999999999999999999999999997 8999999999999999999999999999999999999999975
No 5
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=99.92 E-value=9e-26 Score=155.64 Aligned_cols=84 Identities=45% Similarity=0.776 Sum_probs=79.3
Q ss_pred ccccccCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHH
Q 032101 43 KREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNA 122 (147)
Q Consensus 43 kk~kk~~kdp~~PKRP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~lge~Wk~Ls~eeK~~Y~~~A~~~k~~y~k~~~~ 122 (147)
++.++..+||+.|+||+||||||++++|..|+.+||+++ +.+|+++||++|++||+++|.+|.+.|..++++|..+|.+
T Consensus 9 ~~~~k~~kdp~~pKrP~saf~lF~~~~r~~~~~~~P~~~-~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~ 87 (93)
T 1cg7_A 9 KRTTRKKKDPNAPKRALSAYMFFANENRDIVRSENPDIT-FGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKEL 87 (93)
T ss_dssp CCCCCCCCCSSCCCSCCCHHHHHHHHHTSTTTTTCTTSC-HHHHTTTHHHHHHTTHHHHHHHHHHHHTTHHHHTTHHHHH
T ss_pred cccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667799999999999999999999999999999997 8999999999999999999999999999999999999999
Q ss_pred HhhhC
Q 032101 123 YNKKQ 127 (147)
Q Consensus 123 Y~~~~ 127 (147)
|+.++
T Consensus 88 Y~~~~ 92 (93)
T 1cg7_A 88 YNATL 92 (93)
T ss_dssp HHHHT
T ss_pred HHHcc
Confidence 99864
No 6
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=99.91 E-value=1.5e-25 Score=155.46 Aligned_cols=88 Identities=36% Similarity=0.679 Sum_probs=80.3
Q ss_pred cccccccccCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCC-cHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHH
Q 032101 40 RQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVT-AVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGK 118 (147)
Q Consensus 40 k~~kk~kk~~kdp~~PKRP~sAy~lF~~e~r~~ik~e~P~~~-~~~eisk~lge~Wk~Ls~eeK~~Y~~~A~~~k~~y~k 118 (147)
..+++.++..+||+.|+||+||||||++++|..|+.+||+++ ++.+|+++||++|++||+++|.+|++.|..++++|..
T Consensus 8 ~~k~~~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~ 87 (97)
T 2lhj_A 8 TGVRRPRKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSDEEKKPYERMSDEDRVRYER 87 (97)
T ss_dssp SSCCCTTCTTSCCCCCCCCCCSSTHHHHGGGGGHHHHCTTSTTCSSHHHHHHHHTSSSSCSTTTSSSSHHHHHHHHHHHH
T ss_pred ccccccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 334556778899999999999999999999999999999985 1489999999999999999999999999999999999
Q ss_pred HHHHHhhhC
Q 032101 119 KMNAYNKKQ 127 (147)
Q Consensus 119 ~~~~Y~~~~ 127 (147)
+|.+|+.+.
T Consensus 88 e~~~y~~~~ 96 (97)
T 2lhj_A 88 EKAEYAQRK 96 (97)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcC
Confidence 999998763
No 7
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=99.91 E-value=3e-24 Score=147.64 Aligned_cols=77 Identities=31% Similarity=0.606 Sum_probs=74.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 032101 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNKK 126 (147)
Q Consensus 49 ~kdp~~PKRP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~lge~Wk~Ls~eeK~~Y~~~A~~~k~~y~k~~~~Y~~~ 126 (147)
.+||++|+||+||||||++++|..|+.+||+++ +.+|+++||++|++||+++|++|.++|..++++|..+|.+|+.+
T Consensus 2 ~kdp~~pKrP~~af~lF~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~~ 78 (92)
T 2crj_A 2 SSGSSGPKAPVTGYVRFLNERREQIRTRHPDLP-FPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQS 78 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCTTCC-HHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 479999999999999999999999999999997 89999999999999999999999999999999999999999875
No 8
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=99.91 E-value=5.3e-25 Score=148.44 Aligned_cols=79 Identities=32% Similarity=0.583 Sum_probs=74.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCC-cHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhC
Q 032101 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVT-AVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNKKQ 127 (147)
Q Consensus 49 ~kdp~~PKRP~sAy~lF~~e~r~~ik~e~P~~~-~~~eisk~lge~Wk~Ls~eeK~~Y~~~A~~~k~~y~k~~~~Y~~~~ 127 (147)
++||++|+||+||||+|++++|..|+.+||+++ +|.+|+++||++|++||+++|.+|.++|..++++|..+|.+|+...
T Consensus 2 kkdp~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~~ 81 (83)
T 1aab_A 2 KGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPK 81 (83)
T ss_dssp CCCTTCCCCCCCHHHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHTTTCCCCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 579999999999999999999999999999986 2589999999999999999999999999999999999999998753
No 9
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.91 E-value=4.2e-24 Score=146.88 Aligned_cols=79 Identities=28% Similarity=0.412 Sum_probs=75.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhCCC
Q 032101 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNKKQVT 129 (147)
Q Consensus 50 kdp~~PKRP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~lge~Wk~Ls~eeK~~Y~~~A~~~k~~y~k~~~~Y~~~~~~ 129 (147)
.||++|+||+||||+|++++|..|+.+||+++ +.+|+++||++|++|++++|.+|.++|..++++|..+|.+|+.+...
T Consensus 3 ~~p~~pKrP~say~lF~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~y~~~~~~ 81 (92)
T 2cs1_A 3 SGSSGIKKPMSASALFVQDHRPQFLIENPKTS-LEDATLQIEELWKTLSEEEKLKYEEKATKDLERYNSQMKRAIEQESQ 81 (92)
T ss_dssp CCCSSSCCCCCHHHHHHHHHHHHHHHHCCSSC-HHHHHHHHHHHHHSSCHHHHHHHHHHHHTTTHHHHHHHHHHTSTTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 68999999999999999999999999999998 89999999999999999999999999999999999999999987543
No 10
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.91 E-value=3.6e-25 Score=151.76 Aligned_cols=79 Identities=30% Similarity=0.560 Sum_probs=73.4
Q ss_pred ccccccCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHH
Q 032101 43 KREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNA 122 (147)
Q Consensus 43 kk~kk~~kdp~~PKRP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~lge~Wk~Ls~eeK~~Y~~~A~~~k~~y~k~~~~ 122 (147)
++.+++.+||+.|+||+||||||++++|..|+.+||+++ +.+|+++||++|++|++++|++|+++|..++++|..+|..
T Consensus 9 ~k~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~P~~~-~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~ 87 (90)
T 1wgf_A 9 PSQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELS-ESELTRLLARMWNDLSEKKKAKYKAREAALKAQSERKSGP 87 (90)
T ss_dssp SCSCCCSSCCCCCCCCCCHHHHHHHHTHHHHHHHCTTSC-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTCCCCSS
T ss_pred CCcCcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677799999999999999999999999999999997 8999999999999999999999999999999999876643
No 11
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=99.90 E-value=3.1e-24 Score=146.13 Aligned_cols=79 Identities=27% Similarity=0.441 Sum_probs=74.9
Q ss_pred ccccCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHh
Q 032101 45 EKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYN 124 (147)
Q Consensus 45 ~kk~~kdp~~PKRP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~lge~Wk~Ls~eeK~~Y~~~A~~~k~~y~k~~~~Y~ 124 (147)
.++..+||+.|+||+||||||++++|..|+.+||+++ +.+|+++||++|++|++++|++|+++|..++++|..++++|+
T Consensus 8 ~~~~~kdp~~pKrP~~af~lf~~~~r~~~~~~~P~~~-~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~P~Yk 86 (87)
T 2e6o_A 8 GTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKD-NRAISVILGDRWKKMKNEERRMYTLEAKALAEEQKRLNPDCW 86 (87)
T ss_dssp SSCCCCCCSSCCCCCCHHHHHHHHTHHHHHHHCTTSC-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCcCCC
Confidence 3357789999999999999999999999999999997 799999999999999999999999999999999999999885
No 12
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=99.90 E-value=1.1e-23 Score=138.87 Aligned_cols=72 Identities=36% Similarity=0.732 Sum_probs=69.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 032101 52 PNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNKK 126 (147)
Q Consensus 52 p~~PKRP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~lge~Wk~Ls~eeK~~Y~~~A~~~k~~y~k~~~~Y~~~ 126 (147)
+++||||+||||||++++|..|+.+||+++ +.+|+++||++|++|++ |++|++.|..++++|..+|++|+.+
T Consensus 1 s~~PKrP~say~lf~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~--K~~y~~~A~~~k~~y~~~~~~Y~~k 72 (73)
T 3nm9_A 1 SDKPKRPLSAYALWLNSARESIKRENPGIK-VTEVAKRGGELWRAMKD--KSEWEAKAAKAKDDYDRAVKEFEAN 72 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSSSCC-HHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 479999999999999999999999999998 89999999999999998 9999999999999999999999875
No 13
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=99.90 E-value=4.7e-24 Score=141.34 Aligned_cols=75 Identities=32% Similarity=0.530 Sum_probs=70.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 032101 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNKK 126 (147)
Q Consensus 51 dp~~PKRP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~lge~Wk~Ls~eeK~~Y~~~A~~~k~~y~k~~~~Y~~~ 126 (147)
||+.|+||+||||||++++|..|+.+||+++ +.+|+++||++|++||+++|++|.++|..++++|..++.+|+.+
T Consensus 1 dp~~pkrP~~af~lf~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky~ 75 (76)
T 1hry_A 1 VQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYR 75 (76)
T ss_dssp --CCCCCCCCHHHHHHHHHHHHHHHHCSCCS-SSHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHSSSCCCC
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHCcCCC-HHHHHHHHHhHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Confidence 7899999999999999999999999999998 69999999999999999999999999999999999999999753
No 14
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=99.89 E-value=3.3e-23 Score=135.43 Aligned_cols=70 Identities=31% Similarity=0.607 Sum_probs=67.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCCC-cHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 032101 54 KPKRPPSAFFVFLEEFRKTFKKENPNVT-AVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAY 123 (147)
Q Consensus 54 ~PKRP~sAy~lF~~e~r~~ik~e~P~~~-~~~eisk~lge~Wk~Ls~eeK~~Y~~~A~~~k~~y~k~~~~Y 123 (147)
.||||+||||+|++++|..|+.+||+++ +|.+|+++||++|++||+++|.+|.+.|..++++|..+|.+|
T Consensus 1 kPKrP~say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y 71 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 71 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5999999999999999999999999997 379999999999999999999999999999999999999887
No 15
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=99.89 E-value=2.9e-23 Score=136.85 Aligned_cols=72 Identities=33% Similarity=0.693 Sum_probs=69.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 032101 52 PNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNKK 126 (147)
Q Consensus 52 p~~PKRP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~lge~Wk~Ls~eeK~~Y~~~A~~~k~~y~k~~~~Y~~~ 126 (147)
|++|+||+||||+|++++|..|+.+||+++ +.+|+++||++|++| ++|.+|.+.|..++++|..+|.+|+.+
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~l--~eK~~y~~~A~~~k~~y~~e~~~Y~~~ 72 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPGIK-VTEIAKKGGEMWKEL--KDKSKWEDAAAKDKQRYHDEMRNYKPE 72 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTCC-HHHHHHHHHHHHHTC--TTHHHHHHHHHHHHHHHHTTTGGGTTC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHhh--HhhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 789999999999999999999999999997 899999999999999 899999999999999999999999864
No 16
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=99.89 E-value=5.1e-23 Score=139.44 Aligned_cols=76 Identities=32% Similarity=0.521 Sum_probs=72.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhC
Q 032101 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNKKQ 127 (147)
Q Consensus 51 dp~~PKRP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~lge~Wk~Ls~eeK~~Y~~~A~~~k~~y~k~~~~Y~~~~ 127 (147)
.|+.|+||+||||||++++|..|+.+||+++ +.+|+++||++|++||+++|.+|.+.|..++++|..++.+|..+.
T Consensus 1 ~p~~pKRP~~af~lf~~~~r~~~~~~~P~~~-~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p 76 (85)
T 1j46_A 1 MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRP 76 (85)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHHHSTTSC-HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCC
T ss_pred CcCcCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCcccccCC
Confidence 4789999999999999999999999999997 799999999999999999999999999999999999999998764
No 17
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.88 E-value=1.5e-22 Score=151.01 Aligned_cols=79 Identities=48% Similarity=0.865 Sum_probs=75.8
Q ss_pred cccCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 032101 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNK 125 (147)
Q Consensus 46 kk~~kdp~~PKRP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~lge~Wk~Ls~eeK~~Y~~~A~~~k~~y~k~~~~Y~~ 125 (147)
++..+||+.|+||+||||+|++++|..|+.+||+++ +.+|+++||++|++||+++|++|.+.|..++++|..+|.+|+.
T Consensus 80 kk~~kdp~~pKrp~say~lf~~~~r~~~~~~~p~~~-~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~ 158 (159)
T 2gzk_A 80 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 158 (159)
T ss_dssp GGGSCCTTCCCCCCCHHHHHHHHHHHHHHHHCSCCC-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccccccccccccccccchhhHhhHHHHHHhCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456789999999999999999999999999999997 8999999999999999999999999999999999999999986
No 18
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=99.88 E-value=1.6e-23 Score=140.84 Aligned_cols=76 Identities=24% Similarity=0.464 Sum_probs=73.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 032101 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNKK 126 (147)
Q Consensus 50 kdp~~PKRP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~lge~Wk~Ls~eeK~~Y~~~A~~~k~~y~k~~~~Y~~~ 126 (147)
.|++.|+||+||||||++++|..|+.+||+++ +.+|+++||++|++||+++|++|.++|..++++|..+|.+|+.+
T Consensus 3 ~~~~~pkrP~~af~lf~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~yk~~ 78 (82)
T 1wz6_A 3 SGSSGARRPMNAFLLFCKRHRSLVRQEHPRLD-NRGATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYRSG 78 (82)
T ss_dssp SSCCCSCCCCCHHHHHHHHHHHHHHHHCSSSC-TTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHCCSCSSCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhHHhhcC
Confidence 58999999999999999999999999999997 69999999999999999999999999999999999999999865
No 19
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=99.88 E-value=1.9e-22 Score=138.99 Aligned_cols=78 Identities=17% Similarity=0.204 Sum_probs=73.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 032101 52 PNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNKKQVTNL 131 (147)
Q Consensus 52 p~~PKRP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~lge~Wk~Ls~eeK~~Y~~~A~~~k~~y~k~~~~Y~~~~~~~~ 131 (147)
.|.|+||+|||+||++++|..++.+||+ . +.+|++.||++|++|++++|++|++.|..++++|+++|.+|+.+....+
T Consensus 2 ~~kPKrP~SAy~lf~~~~r~~~k~~~p~-~-~~evsK~lGe~Wk~ls~~eK~pye~kA~~dK~rYekEm~~Y~~~~~~~~ 79 (91)
T 1l8y_A 2 GKLPESPKRAEEIWQQSVIGDYLARFKN-D-RVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPAATN 79 (91)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHHTTS-T-HHHHHHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHTTSCGGGSSS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Confidence 3689999999999999999999999999 4 8999999999999999999999999999999999999999998876533
No 20
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=99.87 E-value=1.4e-22 Score=142.80 Aligned_cols=78 Identities=26% Similarity=0.517 Sum_probs=70.6
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 032101 48 AKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNKK 126 (147)
Q Consensus 48 ~~kdp~~PKRP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~lge~Wk~Ls~eeK~~Y~~~A~~~k~~y~k~~~~Y~~~ 126 (147)
..+|++.|+||+||||||++++|..|+.+||+++ +.+|+++||++|++|++++|++|.++|..++++|..++++|+.+
T Consensus 23 ~~k~~~~pKRP~naf~lF~~~~r~~~k~~~P~~~-~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Yky~ 100 (106)
T 4euw_A 23 SSKNKPHVKRPMNAFMVWAQAARRKLADQYPHLH-NAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQ 100 (106)
T ss_dssp -----CCCCCCCCHHHHHHHHHHHHHHHHCTTSC-HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHCTTCCC-
T ss_pred ccCCCCcCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhhhcCcC
Confidence 4578999999999999999999999999999997 89999999999999999999999999999999999999999865
No 21
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=99.87 E-value=1.5e-22 Score=135.36 Aligned_cols=74 Identities=31% Similarity=0.565 Sum_probs=70.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhC
Q 032101 53 NKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNKKQ 127 (147)
Q Consensus 53 ~~PKRP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~lge~Wk~Ls~eeK~~Y~~~A~~~k~~y~k~~~~Y~~~~ 127 (147)
+.|+||+||||||++++|..|+.+||+++ +.+|+++||++|++||+++|.+|.+.|..++++|..+|.+|+.+.
T Consensus 1 ~~pkrP~~af~lf~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p 74 (80)
T 1gt0_D 1 DRVKRPMNAFMVWSRGQRRKMAQENPKMH-NSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRP 74 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSC-HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCcccccCC
Confidence 47999999999999999999999999997 799999999999999999999999999999999999999998653
No 22
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=99.87 E-value=7.9e-23 Score=133.39 Aligned_cols=71 Identities=30% Similarity=0.581 Sum_probs=63.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHh
Q 032101 53 NKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYN 124 (147)
Q Consensus 53 ~~PKRP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~lge~Wk~Ls~eeK~~Y~~~A~~~k~~y~k~~~~Y~ 124 (147)
+.|+||+||||||++++|..|+.+||+++ +.+|+++||++|++||+++|.+|.+.|..++++|..++++|+
T Consensus 1 gk~krP~~af~lf~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~YK 71 (71)
T 4a3n_A 1 GSIRRPMNAFMVWAKDERKRLAQQNPDLH-NAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYK 71 (71)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTTCTTSC-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCcCcC
Confidence 46899999999999999999999999998 799999999999999999999999999999999999999885
No 23
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=99.87 E-value=1.3e-22 Score=136.38 Aligned_cols=75 Identities=28% Similarity=0.547 Sum_probs=69.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 032101 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNKK 126 (147)
Q Consensus 51 dp~~PKRP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~lge~Wk~Ls~eeK~~Y~~~A~~~k~~y~k~~~~Y~~~ 126 (147)
.++.|+||+||||||++++|..|..+||+++ +.+|+++||++|++|++++|.+|.+.|..++++|..++++|+.+
T Consensus 3 ~~~~pKrP~~af~lf~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky~ 77 (83)
T 3f27_D 3 FTSRIRRPMNAFMVWAKDERKRLAQQNPDLH-NAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYKYR 77 (83)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHCSSSC-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCCCCeeC
Confidence 4678999999999999999999999999998 79999999999999999999999999999999999999999865
No 24
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.87 E-value=1.1e-22 Score=144.07 Aligned_cols=81 Identities=21% Similarity=0.387 Sum_probs=74.1
Q ss_pred cccCCCCCCC-CCCCCHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHh
Q 032101 46 KKAKKDPNKP-KRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYN 124 (147)
Q Consensus 46 kk~~kdp~~P-KRP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~lge~Wk~Ls~eeK~~Y~~~A~~~k~~y~k~~~~Y~ 124 (147)
.++.+|++.| |||+||||+|++++|..|+ +++ +.+|+++||++|++|++++|.+|.++|..++++|..+|.+|.
T Consensus 8 ~kk~kd~~~P~KrP~say~lF~~e~r~~~k----~~~-~~eisk~lg~~Wk~Ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~ 82 (108)
T 1v64_A 8 QLKDKFDGRPTKPPPNSYSLYCAELMANMK----DVP-STERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFL 82 (108)
T ss_dssp CSSCCTTTSCCCCCSSHHHHHHHHHHHHCT----TSC-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCCCCCCCHHHHHHHHHHHHHh----CCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456899999 9999999999999999986 676 899999999999999999999999999999999999999999
Q ss_pred hhCCCCC
Q 032101 125 KKQVTNL 131 (147)
Q Consensus 125 ~~~~~~~ 131 (147)
..+.+..
T Consensus 83 ~~~~~~~ 89 (108)
T 1v64_A 83 ESLPEEE 89 (108)
T ss_dssp HHSCHHH
T ss_pred hhCCHHH
Confidence 9876543
No 25
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=5.6e-22 Score=149.93 Aligned_cols=80 Identities=49% Similarity=0.868 Sum_probs=76.3
Q ss_pred cccCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 032101 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNK 125 (147)
Q Consensus 46 kk~~kdp~~PKRP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~lge~Wk~Ls~eeK~~Y~~~A~~~k~~y~k~~~~Y~~ 125 (147)
++..+||+.|+||+||||||++++|..|+.+||+++ +.+|+++||++|++||+++|++|.++|..++++|..+|.+|+.
T Consensus 93 kk~~kdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~-~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~ 171 (173)
T 2yrq_A 93 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 171 (173)
T ss_dssp SCSCCCSSSCCCCCCHHHHHHHHHHHHHHHHCSSSC-HHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccccCCccccCcccHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445679999999999999999999999999999997 8999999999999999999999999999999999999999987
Q ss_pred h
Q 032101 126 K 126 (147)
Q Consensus 126 ~ 126 (147)
+
T Consensus 172 k 172 (173)
T 2yrq_A 172 K 172 (173)
T ss_dssp C
T ss_pred c
Confidence 5
No 26
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.87 E-value=4.1e-22 Score=135.15 Aligned_cols=74 Identities=22% Similarity=0.389 Sum_probs=70.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhC
Q 032101 53 NKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNKKQ 127 (147)
Q Consensus 53 ~~PKRP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~lge~Wk~Ls~eeK~~Y~~~A~~~k~~y~k~~~~Y~~~~ 127 (147)
..|+||+||||||++++|..|..+||+++ +.+|+++||++|++||+++|++|.+.|..++++|..++++|..+.
T Consensus 1 ~~pKRP~naf~lf~~~~r~~~~~~~P~~~-~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p 74 (86)
T 2lef_A 1 MHIKKPLNAFMLYMKEMRANVVAESTLKE-SAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARD 74 (86)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSSCCC-HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHSTTCCSCS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcccccCCC
Confidence 36999999999999999999999999997 799999999999999999999999999999999999999998653
No 27
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=99.86 E-value=3.6e-22 Score=132.98 Aligned_cols=73 Identities=25% Similarity=0.499 Sum_probs=70.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 032101 53 NKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNKK 126 (147)
Q Consensus 53 ~~PKRP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~lge~Wk~Ls~eeK~~Y~~~A~~~k~~y~k~~~~Y~~~ 126 (147)
+.|+||+||||||++++|..|..+||+++ +.+|+++||++|++||+++|.+|.+.|..++++|..++++|+.+
T Consensus 1 G~iKRP~naf~lf~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~p~Yky~ 73 (79)
T 3u2b_C 1 GHIKRPMNAFMVWSQIERRKIMEQSPDMH-NAEISKRLGKRWKLLKDSDKIPFIQEAERLRLKHMADYPDYKYR 73 (79)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSC-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHSSSCCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCeeC
Confidence 57999999999999999999999999998 79999999999999999999999999999999999999999865
No 28
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.86 E-value=3.3e-22 Score=134.12 Aligned_cols=74 Identities=30% Similarity=0.522 Sum_probs=68.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 032101 52 PNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNKK 126 (147)
Q Consensus 52 p~~PKRP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~lge~Wk~Ls~eeK~~Y~~~A~~~k~~y~k~~~~Y~~~ 126 (147)
++.|+||+||||||++++|..|+.+||+++ +.+|+++||++|++||+++|++|.+.|..++++|..++++|..+
T Consensus 2 ~~~pkRP~naf~lf~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Yky~ 75 (81)
T 1i11_A 2 SPHIKRPMNAFMVWAKDERRKILQAFPDMH-NSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYK 75 (81)
T ss_dssp -CCSCCSCCHHHHHHHHHHHHHHTTCSSCC-HHHHHHHHHHHHTTSCSGGGHHHHHHHHHHHHHHHTTCSCC---
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHHHHCCCCeec
Confidence 578999999999999999999999999998 79999999999999999999999999999999999999999865
No 29
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=99.85 E-value=1.2e-21 Score=126.90 Aligned_cols=66 Identities=32% Similarity=0.536 Sum_probs=62.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 032101 53 NKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAY 123 (147)
Q Consensus 53 ~~PKRP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~lge~Wk~Ls~eeK~~Y~~~A~~~k~~y~k~~~~Y 123 (147)
|.||||+|||++|++++|..++.+|| .+|+++||++|++||+++|.+|.+.|..++++|..+|.+|
T Consensus 1 g~PKrP~say~~F~~~~r~~~k~~~p-----~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y 66 (67)
T 3fgh_A 1 GKPKRPRSAYNVYVAERFQEAKGDSP-----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW 66 (67)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSSH-----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhcCH-----HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 58999999999999999999987664 6999999999999999999999999999999999999998
No 30
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.85 E-value=7.2e-21 Score=133.14 Aligned_cols=79 Identities=18% Similarity=0.315 Sum_probs=69.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhCCC
Q 032101 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNKKQVT 129 (147)
Q Consensus 50 kdp~~PKRP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~lge~Wk~Ls~eeK~~Y~~~A~~~k~~y~k~~~~Y~~~~~~ 129 (147)
...++||||+||||||+++++. ..++++++ +.||+++||++|++|++++|++|+++|..++++|..+|.+|...+.+
T Consensus 4 ~~~~~PKrP~say~lF~~e~~~--~p~~~~~~-~~eisK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~~~~~ 80 (101)
T 1v63_A 4 GSSGPKKPPMNGYQKFSQELLS--NGELNHLP-LKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLWVKSLSP 80 (101)
T ss_dssp CCCSSCCCCSSSHHHHHHHHHH--HCTTTTSC-HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred CCCCCCCCCCCHHHHHHHHHHh--CCCCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH
Confidence 3567999999999999999964 23445575 89999999999999999999999999999999999999999998876
Q ss_pred CC
Q 032101 130 NL 131 (147)
Q Consensus 130 ~~ 131 (147)
..
T Consensus 81 ~~ 82 (101)
T 1v63_A 81 QD 82 (101)
T ss_dssp TH
T ss_pred HH
Confidence 64
No 31
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=4.3e-21 Score=145.08 Aligned_cols=82 Identities=30% Similarity=0.557 Sum_probs=76.0
Q ss_pred ccccCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCC-cHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 032101 45 EKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVT-AVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAY 123 (147)
Q Consensus 45 ~kk~~kdp~~PKRP~sAy~lF~~e~r~~ik~e~P~~~-~~~eisk~lge~Wk~Ls~eeK~~Y~~~A~~~k~~y~k~~~~Y 123 (147)
.+..++||++|+||+||||||++++|..|+.+||+++ ++.+|+++||++|++||+++|.+|.+.|..++++|..+|.+|
T Consensus 6 ~k~~k~dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y 85 (173)
T 2yrq_A 6 SGMGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 85 (173)
T ss_dssp CSSSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHC
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3456789999999999999999999999999999941 389999999999999999999999999999999999999999
Q ss_pred hhh
Q 032101 124 NKK 126 (147)
Q Consensus 124 ~~~ 126 (147)
...
T Consensus 86 ~~~ 88 (173)
T 2yrq_A 86 IPP 88 (173)
T ss_dssp CCC
T ss_pred hhh
Confidence 764
No 32
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=3.1e-21 Score=130.21 Aligned_cols=63 Identities=22% Similarity=0.378 Sum_probs=59.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChhhhhhHHHHHHHH
Q 032101 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKL 112 (147)
Q Consensus 50 kdp~~PKRP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~lge~Wk~Ls~eeK~~Y~~~A~~~ 112 (147)
.+++.||||+||||||++++|..|+.+||+++++.+|+++||++|++|++++|++|+++|..+
T Consensus 1 ~~~~~PKRP~say~lF~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~ls~eeK~~y~~~A~~d 63 (81)
T 2d7l_A 1 GSSGSSGRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEERKVWANKAKGE 63 (81)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSSCHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 378999999999999999999999999999964799999999999999999999999999887
No 33
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.81 E-value=3.2e-20 Score=147.30 Aligned_cols=80 Identities=18% Similarity=0.390 Sum_probs=75.9
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhC
Q 032101 48 AKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNKKQ 127 (147)
Q Consensus 48 ~~kdp~~PKRP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~lge~Wk~Ls~eeK~~Y~~~A~~~k~~y~k~~~~Y~~~~ 127 (147)
...||++|+||+|||+||++++|..|+.+||+++ +.+|+++||++|++|++++|.+|++.|..++++|+.+|..|...+
T Consensus 35 s~~~p~~PKrP~say~lF~~e~r~~~k~~~P~~~-~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~~ 113 (238)
T 3tmm_A 35 SSVLASCPKKPVSSYLRFSKEQLPIFKAQNPDAK-TTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQL 113 (238)
T ss_dssp CCHHHHSCCCCCCHHHHHHHHHHHHHHHHSTTSC-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4578999999999999999999999999999998 899999999999999999999999999999999999999997655
Q ss_pred C
Q 032101 128 V 128 (147)
Q Consensus 128 ~ 128 (147)
.
T Consensus 114 ~ 114 (238)
T 3tmm_A 114 T 114 (238)
T ss_dssp C
T ss_pred C
Confidence 4
No 34
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.80 E-value=6.6e-20 Score=143.43 Aligned_cols=77 Identities=18% Similarity=0.407 Sum_probs=73.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhCC
Q 032101 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNKKQV 128 (147)
Q Consensus 51 dp~~PKRP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~lge~Wk~Ls~eeK~~Y~~~A~~~k~~y~k~~~~Y~~~~~ 128 (147)
+|++|+||+|||++|++++|..|+.+||+++ +.+|+++||++|++||+++|.+|++.|..++++|..+|..|...+.
T Consensus 6 ~p~~PKrP~say~lF~~~~r~~~k~~~P~~~-~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~~t 82 (214)
T 3tq6_A 6 LASCPKKPVSSYLRFSKEQLPIFKAQNPDAK-TTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLT 82 (214)
T ss_dssp HHHSCCCCCCHHHHHHHHHHHHHHHHCTTSC-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHccCHHhhhHHHHHHHHHHHHHHHHhhhhcccCC
Confidence 4789999999999999999999999999998 8999999999999999999999999999999999999999986554
No 35
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=2.6e-20 Score=128.87 Aligned_cols=70 Identities=20% Similarity=0.391 Sum_probs=65.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCcHHHHHHHH---HHHhcCCChhhhhhHHHHHHHHHHHHHHHHH
Q 032101 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAA---GGKWKSMSPAEKAPYESKAEKLKSEYGKKMN 121 (147)
Q Consensus 49 ~kdp~~PKRP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~l---ge~Wk~Ls~eeK~~Y~~~A~~~k~~y~k~~~ 121 (147)
..+++.||||+||||||++++|.+|+.+ +++ +.||+++| |++|++|++++|++|+++|.++++.|++++.
T Consensus 5 ~~~~~~PKRP~sAf~lF~~e~R~~ik~e--~~~-~~eisK~l~~cGe~Wk~ls~eEK~pYe~~A~~~K~~y~kd~~ 77 (93)
T 2cto_A 5 SSGMPNRKASRNAYYFFVQEKIPELRRR--GLP-VARVADAIPYCSSDWALLREEEKEKYAEMAREWRAAQGKDPG 77 (93)
T ss_dssp CCCCCCCCSSCCHHHHHHHTTHHHHHHH--TCC-CSSHHHHTGGGHHHHHHSCHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHc--CCC-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcccc
Confidence 4678999999999999999999999988 676 68999999 9999999999999999999999999998863
No 36
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.78 E-value=7.6e-21 Score=130.77 Aligned_cols=69 Identities=23% Similarity=0.292 Sum_probs=62.3
Q ss_pred cccCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCC-cHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHH
Q 032101 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVT-AVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGK 118 (147)
Q Consensus 46 kk~~kdp~~PKRP~sAy~lF~~e~r~~ik~e~P~~~-~~~eisk~lge~Wk~Ls~eeK~~Y~~~A~~~k~~y~k 118 (147)
.+..+|||+|+||+|||||||+++|..|+.+||+++ .+.+|+ ++|++|++++|++|+++|+.++++|..
T Consensus 14 ~k~~kDpnaPKRp~sAf~lf~~e~R~kik~enP~~s~~~~eIs----e~Wk~ls~eeK~pY~~kA~~~K~~h~~ 83 (90)
T 2yuk_A 14 LKWEKEEALGEMATVAPVLYTNINFPNLKEEFPDWTTRVKQIA----KLWRKASSQERAPYVQKARDNRAALRI 83 (90)
T ss_dssp HHHHHHHHHGGGCSSSHHHHHHHHCTTHHHHCCSHHHHHHHHH----HHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccCCCCCCCCCccHHHHHHHHhHHHHHHHCcCccchHHHHH----HHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence 455679999999999999999999999999999994 046776 999999999999999999999999875
No 37
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.78 E-value=3e-20 Score=145.39 Aligned_cols=78 Identities=28% Similarity=0.430 Sum_probs=71.3
Q ss_pred cccCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 032101 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNK 125 (147)
Q Consensus 46 kk~~kdp~~PKRP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~lge~Wk~Ls~eeK~~Y~~~A~~~k~~y~k~~~~Y~~ 125 (147)
++..+||+.|+||+||||+||+++|..|+.+| ..+|+++||++|++|++++|++|.+.|..++++|..+|.+|+.
T Consensus 106 kk~~kdp~~PKrP~say~lF~~e~r~~~k~~~-----p~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~ 180 (214)
T 3tq6_A 106 KKELTLLGKPKRPRSAYNVYVAERFQEAKGDS-----PQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEE 180 (214)
T ss_dssp HHHHHHTTCCCCCCCHHHHHHHHHTTTSSCSS-----HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCcccccchhhhhHHHHHHhhccCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568999999999999999999999987655 4599999999999999999999999999999999999999999
Q ss_pred hCC
Q 032101 126 KQV 128 (147)
Q Consensus 126 ~~~ 128 (147)
+..
T Consensus 181 ~~~ 183 (214)
T 3tq6_A 181 QMI 183 (214)
T ss_dssp HHH
T ss_pred hCc
Confidence 853
No 38
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.77 E-value=3.3e-20 Score=147.18 Aligned_cols=78 Identities=29% Similarity=0.470 Sum_probs=71.4
Q ss_pred cccCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 032101 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNK 125 (147)
Q Consensus 46 kk~~kdp~~PKRP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~lge~Wk~Ls~eeK~~Y~~~A~~~k~~y~k~~~~Y~~ 125 (147)
++..+||+.|+||+|||||||+++|..|+.+|| .+|+++||++|++|++++|++|+++|..++++|+.+|.+|+.
T Consensus 138 kk~~kdp~~PKrP~say~lF~~e~r~~~k~~~p-----~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~ 212 (238)
T 3tmm_A 138 KKELTLLGKPKRPRSAYNVYVAERFQEAKGDSP-----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEE 212 (238)
T ss_dssp HHHHHHTTCCCCCCCHHHHHHHHHTTTSCCSSH-----HHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCCCCCCCcHHHHHHHHHHHHHhccCH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445689999999999999999999999876554 589999999999999999999999999999999999999999
Q ss_pred hCC
Q 032101 126 KQV 128 (147)
Q Consensus 126 ~~~ 128 (147)
+..
T Consensus 213 k~~ 215 (238)
T 3tmm_A 213 QMI 215 (238)
T ss_dssp HHH
T ss_pred hCc
Confidence 853
No 39
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.72 E-value=1e-17 Score=124.72 Aligned_cols=74 Identities=32% Similarity=0.550 Sum_probs=70.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 032101 52 PNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNKK 126 (147)
Q Consensus 52 p~~PKRP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~lge~Wk~Ls~eeK~~Y~~~A~~~k~~y~k~~~~Y~~~ 126 (147)
++.|+||+||||+|+.+.|..|..+||+++ +.+|+++||++|++||+++|.+|.+.|..++++|..+|..|...
T Consensus 2 ~~~~Krp~~af~~~~~~~~~ki~~~~P~~~-~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~~ 75 (159)
T 2gzk_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMR-NSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYR 75 (159)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHCSSCC-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCSSCSCC
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHhhHHHhccHHHHHHHHHHHHHHHhhccccc
Confidence 678999999999999999999999999997 89999999999999999999999999999999999999999653
No 40
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=74.55 E-value=2.3 Score=32.27 Aligned_cols=48 Identities=13% Similarity=0.321 Sum_probs=38.4
Q ss_pred CCCCcHHHHHHH-HHHHhcCCChhhhhhHHHHHHH-HHHHHHHHHHHHhhh
Q 032101 78 PNVTAVSAVGKA-AGGKWKSMSPAEKAPYESKAEK-LKSEYGKKMNAYNKK 126 (147)
Q Consensus 78 P~~~~~~eisk~-lge~Wk~Ls~eeK~~Y~~~A~~-~k~~y~k~~~~Y~~~ 126 (147)
|... |..+++. ||..|+.+|+++++.|.+.... ....|-..+..|...
T Consensus 70 p~~D-~~~~a~~vLG~~wr~at~~Qr~~F~~~F~~~L~~tY~~~l~~y~~q 119 (211)
T 2qgu_A 70 PRAD-FKRTTQIAMGRFWSQATPEQQQQIQDGFKSLLIRTYAGALANVRNQ 119 (211)
T ss_dssp GGBC-HHHHHHHHHGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHTCSSC
T ss_pred hhcC-HHHHHHHHHhHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 4443 6677654 6999999999999999987776 567799999999854
No 41
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.59 E-value=1.3e+02 Score=19.21 Aligned_cols=39 Identities=5% Similarity=0.011 Sum_probs=27.2
Q ss_pred HHHHHHHHHhCCCCCc----HHHHHHHHHHHhcCCChhhhhhH
Q 032101 67 EEFRKTFKKENPNVTA----VSAVGKAAGGKWKSMSPAEKAPY 105 (147)
Q Consensus 67 ~e~r~~ik~e~P~~~~----~~eisk~lge~Wk~Ls~eeK~~Y 105 (147)
..+|...+.-||+... ..+....|.+-|..|++..+..-
T Consensus 36 ~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~ 78 (99)
T 2yua_A 36 AAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRK 78 (99)
T ss_dssp HHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHH
Confidence 4456666777888741 35678889999999987765433
No 42
>3u65_B TP33 protein; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; HET: EDO; 1.40A {Treponema pallidum subsp} PDB: 4di4_B* 4di3_D*
Probab=23.26 E-value=1.1e+02 Score=23.92 Aligned_cols=23 Identities=13% Similarity=0.397 Sum_probs=18.7
Q ss_pred HHHhcCCChhhhhhHHHHHHHHH
Q 032101 91 GGKWKSMSPAEKAPYESKAEKLK 113 (147)
Q Consensus 91 ge~Wk~Ls~eeK~~Y~~~A~~~k 113 (147)
...|..||++.++...+.+.+..
T Consensus 234 ~~~w~~L~~e~q~~i~~a~~e~~ 256 (328)
T 3u65_B 234 DGSWARIPSRYHDAMLQAATRVR 256 (328)
T ss_dssp HHHHTTSCGGGHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHH
Confidence 35799999999999998776543
No 43
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=22.88 E-value=1.2e+02 Score=20.45 Aligned_cols=27 Identities=19% Similarity=0.340 Sum_probs=21.6
Q ss_pred HHHHHHHHHhcCCChhhhhhHHHHHHH
Q 032101 85 AVGKAAGGKWKSMSPAEKAPYESKAEK 111 (147)
Q Consensus 85 eisk~lge~Wk~Ls~eeK~~Y~~~A~~ 111 (147)
+..+.-.+++.-|+|+.|..|.+..++
T Consensus 79 ~~~r~~~qmy~lLTPEQk~q~~~~~~~ 105 (108)
T 3o39_A 79 AHMETQNKIYNILTPEQKKQFNANFEK 105 (108)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 445666889999999999999886543
No 44
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=22.72 E-value=1.3e+02 Score=21.36 Aligned_cols=32 Identities=13% Similarity=0.295 Sum_probs=23.9
Q ss_pred HHHHHHHHHhcCCChhhhhhHHHHHHHHHHHH
Q 032101 85 AVGKAAGGKWKSMSPAEKAPYESKAEKLKSEY 116 (147)
Q Consensus 85 eisk~lge~Wk~Ls~eeK~~Y~~~A~~~k~~y 116 (147)
+..+.-.+++.-|++|.|..|.+..++...++
T Consensus 107 ~r~k~~~qiy~vLTPEQk~ql~e~~~~r~~~~ 138 (145)
T 3itf_A 107 EMAKVRNQMYRLLTPEQQAVLNEKHQQRMEQL 138 (145)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Confidence 44555678999999999999988766655443
No 45
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=20.54 E-value=1.2e+02 Score=19.17 Aligned_cols=39 Identities=15% Similarity=0.196 Sum_probs=27.0
Q ss_pred HHHHHHHHHhCCCCC-cHHHHHHHHHHHhcCCChhhhhhH
Q 032101 67 EEFRKTFKKENPNVT-AVSAVGKAAGGKWKSMSPAEKAPY 105 (147)
Q Consensus 67 ~e~r~~ik~e~P~~~-~~~eisk~lge~Wk~Ls~eeK~~Y 105 (147)
..+|...+.-||+.. ...+....|.+-|..|++..+..-
T Consensus 27 ~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~ 66 (92)
T 2o37_A 27 KGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREI 66 (92)
T ss_dssp HHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHHHHH
T ss_pred HHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHHHHH
Confidence 445666677789874 125778889999999887655443
Done!