Your job contains 1 sequence.
>032105
MAFCGKLGMLVRQNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDI
TEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRPPRSDGG
YGGGNDGSYGGNRGGYRVNYRGGDDGF
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 032105
(147 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2119495 - symbol:GR-RBP2 "AT4G13850" species:3... 360 5.2e-33 1
TAIR|locus:2076096 - symbol:GRP4 "glycine-rich RNA-bindin... 335 2.3e-30 1
TAIR|locus:2171539 - symbol:RPS19 "ribosomal protein S19"... 303 5.7e-27 1
TAIR|locus:2159401 - symbol:GR-RBP3 "glycine-rich RNA-bin... 282 9.7e-25 1
TAIR|locus:2019622 - symbol:GR-RBP5 "AT1G74230" species:3... 280 1.6e-24 1
UNIPROTKB|Q43472 - symbol:blt801 "Glycine-rich RNA-bindin... 251 1.9e-21 1
TAIR|locus:2049721 - symbol:AT2G37220 species:3702 "Arabi... 240 2.7e-20 1
TAIR|locus:2077427 - symbol:AT3G08000 species:3702 "Arabi... 240 2.7e-20 1
TAIR|locus:2122009 - symbol:RBP31 "AT4G24770" species:370... 227 6.5e-19 1
TAIR|locus:2136298 - symbol:CCR1 "cold, circadian rhythm,... 223 1.7e-18 1
UNIPROTKB|I3L5X7 - symbol:RBM3 "Uncharacterized protein" ... 222 2.2e-18 1
TAIR|locus:2027438 - symbol:GR-RBP6 "glycine-rich RNA-bin... 222 2.2e-18 1
UNIPROTKB|F6RBQ9 - symbol:F6RBQ9 "Uncharacterized protein... 221 2.8e-18 1
MGI|MGI:1099460 - symbol:Rbm3 "RNA binding motif protein ... 221 2.8e-18 1
UNIPROTKB|G3V6P6 - symbol:Rbm3 "Putative RNA-binding prot... 221 2.8e-18 1
TAIR|locus:2049359 - symbol:GRP7 "AT2G21660" species:3702... 220 3.6e-18 1
UNIPROTKB|P98179 - symbol:RBM3 "Putative RNA-binding prot... 219 4.6e-18 1
RGD|620145 - symbol:Rbm3 "RNA binding motif (RNP1, RRM) p... 217 7.5e-18 1
ASPGD|ASPL0000040642 - symbol:AN2989 species:162425 "Emer... 216 9.5e-18 1
UNIPROTKB|E2R771 - symbol:RBM3 "Uncharacterized protein" ... 215 1.2e-17 1
ZFIN|ZDB-GENE-030131-5841 - symbol:cirbp "cold inducible ... 212 2.5e-17 1
UNIPROTKB|Q28IQ9 - symbol:cirbp "Cold-inducible RNA-bindi... 209 5.3e-17 1
UNIPROTKB|Q3SZN4 - symbol:CIRBP "Uncharacterized protein"... 208 6.7e-17 1
UNIPROTKB|E2R6G2 - symbol:CIRBP "Uncharacterized protein"... 208 6.7e-17 1
UNIPROTKB|F6XHA7 - symbol:CIRBP "Uncharacterized protein"... 208 6.7e-17 1
UNIPROTKB|B4E2X2 - symbol:CIRBP "Cold-inducible RNA-bindi... 208 6.7e-17 1
UNIPROTKB|D6W5Y5 - symbol:CIRBP "Cold-inducible RNA-bindi... 208 6.7e-17 1
UNIPROTKB|K7EJV5 - symbol:CIRBP "Cold-inducible RNA-bindi... 208 6.7e-17 1
UNIPROTKB|K7EMY9 - symbol:CIRBP "Cold-inducible RNA-bindi... 208 6.7e-17 1
UNIPROTKB|K7EPM4 - symbol:CIRBP "Cold-inducible RNA-bindi... 208 6.7e-17 1
UNIPROTKB|K7EQR7 - symbol:CIRBP "Cold-inducible RNA-bindi... 208 6.7e-17 1
UNIPROTKB|K7ER40 - symbol:CIRBP "Cold-inducible RNA-bindi... 208 6.7e-17 1
UNIPROTKB|Q14011 - symbol:CIRBP "Cold-inducible RNA-bindi... 208 6.7e-17 1
UNIPROTKB|F1S6R1 - symbol:CIRBP "Uncharacterized protein"... 208 6.7e-17 1
UNIPROTKB|Q5RF83 - symbol:CIRBP "Cold-inducible RNA-bindi... 208 6.7e-17 1
UNIPROTKB|K7ENX8 - symbol:CIRBP "Cold-inducible RNA-bindi... 207 8.6e-17 1
UNIPROTKB|P60826 - symbol:CIRBP "Cold-inducible RNA-bindi... 205 1.4e-16 1
UNIPROTKB|Q9PTX2 - symbol:cirbp "Cold-inducible RNA-bindi... 205 1.4e-16 1
MGI|MGI:893588 - symbol:Cirbp "cold inducible RNA binding... 205 1.4e-16 1
RGD|620756 - symbol:Cirbp "cold inducible RNA binding pro... 205 1.4e-16 1
TAIR|locus:2079276 - symbol:ATRZ-1A species:3702 "Arabido... 204 1.8e-16 1
UNIPROTKB|H9KZV5 - symbol:CIRBP "Uncharacterized protein"... 200 4.7e-16 1
UNIPROTKB|H9L0U4 - symbol:CIRBP "Uncharacterized protein"... 200 4.7e-16 1
UNIPROTKB|H9L3B3 - symbol:CIRBP "Uncharacterized protein"... 200 4.7e-16 1
UNIPROTKB|Q83CD7 - symbol:CBU_1183 "Glycine-rich RNA-bind... 200 4.7e-16 1
TIGR_CMR|CBU_1183 - symbol:CBU_1183 "nucleic acid binding... 200 4.7e-16 1
TAIR|locus:2119505 - symbol:AT4G13860 species:3702 "Arabi... 199 6.0e-16 1
TAIR|locus:2160752 - symbol:AT5G06210 species:3702 "Arabi... 199 6.0e-16 1
UNIPROTKB|Q9DED4 - symbol:cirbp-b "Cold-inducible RNA-bin... 198 7.7e-16 1
TAIR|locus:2157702 - symbol:CP31B "chloroplast RNA-bindin... 192 3.3e-15 1
UNIPROTKB|E2R228 - symbol:E2R228 "Uncharacterized protein... 192 3.3e-15 1
ZFIN|ZDB-GENE-050417-329 - symbol:zgc:112425 "zgc:112425"... 192 3.3e-15 1
UNIPROTKB|I3LH22 - symbol:LOC100514264 "Uncharacterized p... 191 4.2e-15 1
UNIPROTKB|O93235 - symbol:cirbp-a "Cold-inducible RNA-bin... 191 4.2e-15 1
TAIR|locus:2049816 - symbol:AT2G37510 species:3702 "Arabi... 191 4.2e-15 1
TAIR|locus:2202740 - symbol:AT1G60000 species:3702 "Arabi... 187 1.1e-14 1
UNIPROTKB|I3LQ36 - symbol:I3LQ36 "Uncharacterized protein... 187 1.1e-14 1
UNIPROTKB|G4MY43 - symbol:MGG_01268 "Nuclear localization... 193 1.8e-14 1
TAIR|locus:2172144 - symbol:AT5G54580 species:3702 "Arabi... 184 2.3e-14 1
CGD|CAL0005232 - symbol:orf19.6090 species:5476 "Candida ... 189 3.0e-14 1
UNIPROTKB|Q5AB84 - symbol:NSR1 "Potential nuclear localiz... 189 3.0e-14 1
UNIPROTKB|K7ELT6 - symbol:CIRBP "Cold-inducible RNA-bindi... 181 4.9e-14 1
UNIPROTKB|K7ELV6 - symbol:CIRBP "Cold-inducible RNA-bindi... 181 4.9e-14 1
TAIR|locus:2079874 - symbol:CP33 "chloroplast RNA-binding... 182 9.4e-14 1
UNIPROTKB|Q60A61 - symbol:MCA1010 "RNA-binding protein" s... 178 1.0e-13 1
TAIR|locus:2032120 - symbol:AT1G78260 species:3702 "Arabi... 178 1.4e-13 1
TAIR|locus:2196521 - symbol:AT1G22330 species:3702 "Arabi... 178 1.5e-13 1
UNIPROTKB|E1BLB7 - symbol:RBM38 "Uncharacterized protein"... 176 1.6e-13 1
UNIPROTKB|A5GFN7 - symbol:RNPC1 "Uncharacterized protein"... 176 1.6e-13 1
UNIPROTKB|A5GFN8 - symbol:RNPC1 "Uncharacterized protein"... 176 1.6e-13 1
ZFIN|ZDB-GENE-030131-5923 - symbol:rbm38 "RNA binding mot... 175 2.1e-13 1
UNIPROTKB|E1BZ17 - symbol:RBM24 "RNA-binding protein 24" ... 174 2.7e-13 1
UNIPROTKB|Q5ZJX4 - symbol:RBM38 "RNA-binding protein 38" ... 174 2.7e-13 1
UNIPROTKB|Q5ZMA3 - symbol:RBM24 "RNA-binding protein 24" ... 174 2.7e-13 1
UNIPROTKB|F6VZ39 - symbol:RBM38 "RNA-binding protein 38" ... 174 2.7e-13 1
UNIPROTKB|Q9H0Z9 - symbol:RBM38 "RNA-binding protein 38" ... 174 2.7e-13 1
UNIPROTKB|Q6GQD3 - symbol:rbm24-a "RNA-binding protein 24... 174 2.7e-13 1
UNIPROTKB|Q6P8A7 - symbol:rbm24 "RNA-binding protein 24" ... 174 2.7e-13 1
UNIPROTKB|Q9I8B3 - symbol:rbm24-b "RNA-binding protein 24... 174 2.7e-13 1
UNIPROTKB|H7BY16 - symbol:NCL "Nucleolin" species:9606 "H... 176 2.9e-13 1
MGI|MGI:1889294 - symbol:Rbm38 "RNA binding motif protein... 173 3.4e-13 1
RGD|1308503 - symbol:Rbm38 "RNA binding motif protein 38"... 173 3.4e-13 1
WB|WBGene00015943 - symbol:tiar-1 species:6239 "Caenorhab... 179 3.9e-13 1
ASPGD|ASPL0000076731 - symbol:AN4865 species:162425 "Emer... 181 4.1e-13 1
ZFIN|ZDB-GENE-040628-1 - symbol:rbm24a "RNA binding motif... 172 4.4e-13 1
ZFIN|ZDB-GENE-060312-43 - symbol:rbm24b "RNA binding moti... 172 4.4e-13 1
TAIR|locus:2037370 - symbol:AT1G20880 species:3702 "Arabi... 172 5.3e-13 1
MGI|MGI:3610364 - symbol:Rbm24 "RNA binding motif protein... 171 5.6e-13 1
RGD|1584029 - symbol:Rbm24 "RNA binding motif protein 24"... 171 5.6e-13 1
UNIPROTKB|F1SMV6 - symbol:LOC100737174 "Uncharacterized p... 176 6.2e-13 1
TAIR|locus:2006998 - symbol:AT1G33470 species:3702 "Arabi... 170 7.1e-13 1
UNIPROTKB|E9PTI5 - symbol:E9PTI5 "Uncharacterized protein... 179 7.7e-13 1
UNIPROTKB|Q96B58 - symbol:TIA1 "TIA1 cytotoxic granule-as... 169 9.1e-13 1
UNIPROTKB|G4MR34 - symbol:MGG_09885 "Cleavage stimulation... 172 9.3e-13 1
RGD|3153 - symbol:Ncl "nucleolin" species:10116 "Rattus n... 179 1.1e-12 1
UNIPROTKB|P08199 - symbol:NCL "Nucleolin" species:10036 "... 179 1.1e-12 1
UNIPROTKB|Q5U328 - symbol:Ncl "Nucleolin, isoform CRA_c" ... 179 1.1e-12 1
TAIR|locus:2077392 - symbol:AT3G07810 species:3702 "Arabi... 158 1.2e-12 2
UNIPROTKB|A6QPJ1 - symbol:RBM24 "Uncharacterized protein"... 167 1.5e-12 1
UNIPROTKB|Q9BX46 - symbol:RBM24 "RNA-binding protein 24" ... 167 1.5e-12 1
WARNING: Descriptions of 1698 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2119495 [details] [associations]
symbol:GR-RBP2 "AT4G13850" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP;IMP] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0001072
"RNA binding transcription antitermination factor activity"
evidence=IDA] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0009631 "cold acclimation" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IMP] [GO:0009845
"seed germination" evidence=IMP] [GO:0031564 "transcription
antitermination" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0006364 "rRNA processing" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0005507 GO:GO:0003723
GO:GO:0006970 GO:GO:0009845 GO:GO:0003690 GO:GO:0003697
eggNOG:COG0724 EMBL:AL035528 EMBL:AL161537 HOGENOM:HOG000276232
EMBL:AJ002892 EMBL:AY072361 EMBL:BT002197 EMBL:AY085621 EMBL:X69377
EMBL:Z18189 IPI:IPI00527583 PIR:S31443 PIR:T05254
RefSeq:NP_193121.1 UniGene:At.15585 UniGene:At.2
ProteinModelPortal:Q9SVM8 SMR:Q9SVM8 IntAct:Q9SVM8 STRING:Q9SVM8
PaxDb:Q9SVM8 PRIDE:Q9SVM8 ProMEX:Q9SVM8 EnsemblPlants:AT4G13850.1
GeneID:827019 KEGG:ath:AT4G13850 GeneFarm:3949 TAIR:At4g13850
InParanoid:Q9SVM8 OMA:ISEMDGK PhylomeDB:Q9SVM8 ProtClustDB:PLN03134
Genevestigator:Q9SVM8 Uniprot:Q9SVM8
Length = 158
Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
Identities = 70/118 (59%), Positives = 94/118 (79%)
Query: 1 MAFCGKLGMLVRQN----GQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSN 56
MAFC KLG L+RQN G P S++ ++R MS TKLF+GGLSWGTDD+SL++AF++
Sbjct: 1 MAFCNKLGGLLRQNISSNGNVPVTSMLGSLRLMS---TKLFIGGLSWGTDDASLRDAFAH 57
Query: 57 FGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRP 114
FGD+ +AKVI +RE+G+SRGFGFV ++ +A++A S MDG+ELNGR+IRV+ ANDRP
Sbjct: 58 FGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRP 115
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
Identities = 67/117 (57%), Positives = 91/117 (77%)
Query: 1 MAFCGKL-GML---VRQNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSN 56
MAFC KL G+L V Q+ P S++ ++R+MS +KLFVGGLSWGTDDSSLK+AF++
Sbjct: 1 MAFCNKLSGILRQGVSQSSNGPVTSMLGSLRYMS---SKLFVGGLSWGTDDSSLKQAFTS 57
Query: 57 FGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 113
FG++TEA VI +RE+G+SRGFGFV++ +SA++A MDG+ELNGR IRV+ A +R
Sbjct: 58 FGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATER 114
>TAIR|locus:2171539 [details] [associations]
symbol:RPS19 "ribosomal protein S19" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA;NAS] [GO:0015935 "small ribosomal
subunit" evidence=IEA] [GO:0006354 "DNA-dependent transcription,
elongation" evidence=RCA] [GO:0005763 "mitochondrial small
ribosomal subunit" evidence=IDA] InterPro:IPR000504
InterPro:IPR002222 InterPro:IPR005732 InterPro:IPR012677
InterPro:IPR020934 InterPro:IPR023575 Pfam:PF00076 Pfam:PF00203
PRINTS:PR00975 PROSITE:PS00323 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006412
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003735 eggNOG:COG0724
GO:GO:0005763 EMBL:AB018117 Gene3D:3.30.860.10 HAMAP:MF_00531
SUPFAM:SSF54570 TIGRFAMs:TIGR01050 KO:K02965 EMBL:X78035
EMBL:X77989 EMBL:AY045963 EMBL:AY091354 EMBL:Z18203 IPI:IPI00544075
PIR:S71114 RefSeq:NP_568681.1 UniGene:At.5396
ProteinModelPortal:P39697 SMR:P39697 STRING:P39697 PaxDb:P39697
PRIDE:P39697 EnsemblPlants:AT5G47320.1 GeneID:834779
KEGG:ath:AT5G47320 GeneFarm:3993 TAIR:At5g47320 InParanoid:P39697
PhylomeDB:P39697 Genevestigator:P39697 GermOnline:AT5G47320
Uniprot:P39697
Length = 212
Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
Identities = 62/114 (54%), Positives = 86/114 (75%)
Query: 1 MAFCGKLGMLVRQNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDI 60
MAFC KLG +Q P +S++ ++R+MS TKL++GGLS GTD+ SLK+AFS+F +
Sbjct: 1 MAFCTKLGGHWKQGVNVPVSSMLGSLRYMS---TKLYIGGLSPGTDEHSLKDAFSSFNGV 57
Query: 61 TEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRP 114
TEA+V+T + +G+SRG+GFV + S +SA+SA SAM+GQELNG NI V+ A D P
Sbjct: 58 TEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVAKDWP 111
>TAIR|locus:2159401 [details] [associations]
symbol:GR-RBP3 "glycine-rich RNA-binding protein 3"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0009409 "response to cold"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005507
"copper ion binding" evidence=IDA] [GO:0006626 "protein targeting
to mitochondrion" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0034968 "histone lysine methylation"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005507 EMBL:AB006696 eggNOG:COG0724
HSSP:Q14103 KO:K12741 EMBL:AY060565 EMBL:AY125548 EMBL:AB493804
IPI:IPI00542729 RefSeq:NP_200911.1 UniGene:At.24064
ProteinModelPortal:Q9FNR1 SMR:Q9FNR1 STRING:Q9FNR1 PaxDb:Q9FNR1
PRIDE:Q9FNR1 EnsemblPlants:AT5G61030.1 GeneID:836224
KEGG:ath:AT5G61030 GeneFarm:3953 TAIR:At5g61030
HOGENOM:HOG000029199 InParanoid:Q9FNR1 OMA:YANDRTS
ProtClustDB:CLSN2916423 Genevestigator:Q9FNR1 Uniprot:Q9FNR1
Length = 309
Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
Identities = 57/121 (47%), Positives = 88/121 (72%)
Query: 1 MAFCGKLGMLVRQ------NGQAPKAS--LINAVRFMSQSQTKLFVGGLSWGTDDSSLKE 52
MAF K G +++Q N Q +S L A+R MS S KLF+GG+++ D+ SL+E
Sbjct: 1 MAFLSKFGNILKQTTNKQLNAQVSLSSPSLFQAIRCMSSS--KLFIGGMAYSMDEDSLRE 58
Query: 53 AFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAND 112
AF+ +G++ + +VI +RE+G+SRGFGFVT+ S+E+ASSA A+DG++L+GR ++V++AND
Sbjct: 59 AFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYAND 118
Query: 113 R 113
R
Sbjct: 119 R 119
>TAIR|locus:2019622 [details] [associations]
symbol:GR-RBP5 "AT1G74230" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005524
"ATP binding" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005507 eggNOG:COG0724
EMBL:AC020579 HSSP:Q14103 KO:K12741 EMBL:BT002037 EMBL:BT006315
IPI:IPI00516639 PIR:F96770 RefSeq:NP_177563.1 UniGene:At.18152
ProteinModelPortal:Q9C909 SMR:Q9C909 PaxDb:Q9C909 PRIDE:Q9C909
EnsemblPlants:AT1G74230.1 GeneID:843763 KEGG:ath:AT1G74230
GeneFarm:3954 TAIR:At1g74230 InParanoid:Q9C909 OMA:TERGSGF
ProtClustDB:CLSN2914559 Genevestigator:Q9C909 Uniprot:Q9C909
Length = 289
Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
Identities = 55/115 (47%), Positives = 82/115 (71%)
Query: 1 MAFCGKLGMLVRQNGQ--APKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFG 58
MAF K+G L Q +S++ ++R MS S K+FVGG+S+ TD+ L+EAFS +G
Sbjct: 1 MAFLSKVGRLFSQTSSHVTASSSMLQSIRCMSSS--KIFVGGISYSTDEFGLREAFSKYG 58
Query: 59 DITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 113
++ +AK+I +RE+G+SRGF FVT+ S E AS+A +DGQ+L+GR IRV++A +R
Sbjct: 59 EVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ-LDGQDLHGRRIRVNYATER 112
>UNIPROTKB|Q43472 [details] [associations]
symbol:blt801 "Glycine-rich RNA-binding protein blt801"
species:4513 "Hordeum vulgare" [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0009409 "response to cold" evidence=IDA] [GO:0009737 "response
to abscisic acid stimulus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0003697
EMBL:U49482 PIR:S71453 HSSP:P11940 ProteinModelPortal:Q43472
Gramene:Q43472 Genevestigator:Q43472 Uniprot:Q43472
Length = 161
Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
Identities = 46/85 (54%), Positives = 65/85 (76%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
M+ + + FVGGL W TDD SL+ AFS +GD+ ++K+IT+RE+G+SRGFGFVT+ S+E+
Sbjct: 1 MADVEYRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAM 60
Query: 89 SSAQSAMDGQELNGRNIRVSFANDR 113
A AM+GQ+L+GRNI V+ A R
Sbjct: 61 RQAIEAMNGQDLDGRNITVNEAQSR 85
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
Identities = 44/84 (52%), Positives = 62/84 (73%)
Query: 32 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSA 91
S +++VG LSWG DD +L+ FS G + EA+VI +R+SG+S+GFGFVTYDS++ +A
Sbjct: 202 SGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNA 261
Query: 92 QSAMDGQELNGRNIRVSFANDRPP 115
++DG +L+GR IRVS A RPP
Sbjct: 262 IKSLDGADLDGRQIRVSEAEARPP 285
Score = 157 (60.3 bits), Expect = 3.9e-11, P = 3.9e-11
Identities = 33/81 (40%), Positives = 49/81 (60%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
KLFVG L + D + L + F + G++ +VI ++ +G+SRGFGFVT S +A
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 95 MDGQELNGRNIRVSFANDRPP 115
+G EL+GR +RV+ A PP
Sbjct: 152 FNGYELDGRPLRVN-AGPPPP 171
>TAIR|locus:2077427 [details] [associations]
symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
Genevestigator:Q9SFB4 Uniprot:Q9SFB4
Length = 143
Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
Identities = 50/113 (44%), Positives = 74/113 (65%)
Query: 9 MLVRQNGQAPKASLINAVRFMSQSQT--------KLFVGGLSWGTDDSSLKEAFSNFGDI 60
+LVR+ P+ S+ ++ F+ Q T KLF+GGLSW D+ SLK+AFS+FG++
Sbjct: 8 LLVRRVSAIPQHSISSSFHFLPQFCTSSSASPSSKLFIGGLSWSVDEQSLKDAFSSFGEV 67
Query: 61 TEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 113
E ++ ++ SG+SRGFGFV + A SA+ AMDG+ L GR +R+SFA +R
Sbjct: 68 AEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAMDGKGLLGRPLRISFALER 120
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
Identities = 45/108 (41%), Positives = 66/108 (61%)
Query: 8 GMLVRQNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVIT 67
G L+ N AP+ S + + +++VG L W D+ L++ FS G + EA+V+
Sbjct: 218 GRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVY 277
Query: 68 ERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRPP 115
+RE+G+SRGFGFVT + + A SA+DGQ L GR IRV+ A +RPP
Sbjct: 278 DRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPP 325
Score = 145 (56.1 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 35/100 (35%), Positives = 53/100 (53%)
Query: 15 GQAPKASLINAVRFMSQSQ-TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGK 73
G + ++ F S+ KLFVG L++ + +L F G + A+VI RE+ +
Sbjct: 130 GDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQ 189
Query: 74 SRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 113
SRGFGFVT S + A +A + +LNGR + V+ A R
Sbjct: 190 SRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPR 229
>TAIR|locus:2136298 [details] [associations]
symbol:CCR1 "cold, circadian rhythm, and RNA binding 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0005618 "cell wall" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0009651 "response to salt
stress" evidence=IEP] [GO:0005777 "peroxisome" evidence=IDA]
[GO:0010043 "response to zinc ion" evidence=IEP] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
[GO:0048046 "apoplast" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0000380 "alternative mRNA splicing, via spliceosome"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005886 GO:GO:0009506
GO:GO:0009737 GO:GO:0005794 GO:GO:0005618 GO:GO:0009507
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0005777
GO:GO:0000166 GO:GO:0010043 GO:GO:0048046 GO:GO:0009651
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003723
EMBL:AL161594 eggNOG:COG0724 EMBL:AL050351 GO:GO:0000380
HOGENOM:HOG000276232 UniGene:At.23968 ProtClustDB:CLSN2913158
EMBL:Z14988 EMBL:L00649 EMBL:L04171 EMBL:AY034997 EMBL:AY063005
IPI:IPI00520057 IPI:IPI00526742 PIR:S30148 RefSeq:NP_195637.1
ProteinModelPortal:Q03251 SMR:Q03251 MINT:MINT-1163792
STRING:Q03251 PaxDb:Q03251 PRIDE:Q03251 ProMEX:Q03251
EnsemblPlants:AT4G39260.1 GeneID:830082 KEGG:ath:AT4G39260
TAIR:At4g39260 InParanoid:Q03251 OMA:GNNSGGY Genevestigator:Q03251
Uniprot:Q03251
Length = 169
Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
Identities = 41/85 (48%), Positives = 60/85 (70%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
MS+ + + FVGGL+W T+D L+ FS FGD+ ++K+I +RESG+SRGFGFVT+ ++
Sbjct: 1 MSEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60
Query: 89 SSAQSAMDGQELNGRNIRVSFANDR 113
A M+G+EL+GR I V+ A R
Sbjct: 61 RDAIEEMNGKELDGRVITVNEAQSR 85
>UNIPROTKB|I3L5X7 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
Uniprot:I3L5X7
Length = 156
Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
Identities = 42/82 (51%), Positives = 62/82 (75%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
MS + KLFVGGL++ TD+ +L++ FS+FG I+E V+ +RE+ +SRGFGF+T+ + E A
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 89 SSAQSAMDGQELNGRNIRVSFA 110
S+A AM+G+ L+GR IRV A
Sbjct: 61 SNAMRAMNGESLDGRQIRVDHA 82
>TAIR|locus:2027438 [details] [associations]
symbol:GR-RBP6 "glycine-rich RNA-binding protein 6"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009651 "response to salt stress"
evidence=IEP] [GO:0005768 "endosome" evidence=IDA] [GO:0005794
"Golgi apparatus" evidence=IDA] [GO:0005802 "trans-Golgi network"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684 GO:GO:0005794
GO:GO:0000166 GO:GO:0005768 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005802 HSSP:P09651 EMBL:AC026238 EMBL:BT005999 EMBL:AK227482
EMBL:AY085358 IPI:IPI00537929 PIR:A86320 RefSeq:NP_173298.1
UniGene:At.356 UniGene:At.41785 ProteinModelPortal:Q9FZ84
SMR:Q9FZ84 IntAct:Q9FZ84 PaxDb:Q8LEL7 PRIDE:Q9FZ84
EnsemblPlants:AT1G18630.1 GeneID:838444 KEGG:ath:AT1G18630
GeneFarm:3974 TAIR:At1g18630 eggNOG:NOG255734 InParanoid:Q9FZ84
OMA:IFRQPRA PhylomeDB:Q9FZ84 ProtClustDB:CLSN2914186
Genevestigator:Q9FZ84 Uniprot:Q9FZ84
Length = 155
Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
Identities = 53/107 (49%), Positives = 69/107 (64%)
Query: 1 MAFCGKLGMLVRQNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDI 60
M + G + RQ +A +AS +S + +K+FVGGLS TD LKEAF +FG I
Sbjct: 4 MGLFSRAGNIFRQP-RALQASNAMLQGNLSLTPSKIFVGGLSPSTDVELLKEAFGSFGKI 62
Query: 61 TEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRV 107
+A V+ +RESG SRGFGFVTYDS E A++A AM +EL+GR I V
Sbjct: 63 VDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAMQNKELDGRIIGV 109
>UNIPROTKB|F6RBQ9 [details] [associations]
symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
Length = 160
Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
Identities = 42/82 (51%), Positives = 62/82 (75%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
MS + KLFVGGL++ TD+ +L++ FS+FG I+E V+ +RE+ +SRGFGF+T+ + E A
Sbjct: 1 MSSEEGKLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 89 SSAQSAMDGQELNGRNIRVSFA 110
S+A AM+G+ L+GR IRV A
Sbjct: 61 SNAMRAMNGESLDGRQIRVDHA 82
>MGI|MGI:1099460 [details] [associations]
symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0009409
"response to cold" evidence=IDA] [GO:0015934 "large ribosomal
subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
GermOnline:ENSMUSG00000031167 Uniprot:O89086
Length = 153
Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
Identities = 42/82 (51%), Positives = 61/82 (74%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
MS + KLFVGGL++ TD+ +L++ FS+FG I+E V+ +RE+ +SRGFGF+T+ + E A
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 89 SSAQSAMDGQELNGRNIRVSFA 110
S A AM+G+ L+GR IRV A
Sbjct: 61 SDAMRAMNGESLDGRQIRVDHA 82
>UNIPROTKB|G3V6P6 [details] [associations]
symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
subunit binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
Uniprot:G3V6P6
Length = 156
Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
Identities = 42/82 (51%), Positives = 61/82 (74%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
MS + KLFVGGL++ TD+ +L++ FS+FG I+E V+ +RE+ +SRGFGF+T+ + E A
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 89 SSAQSAMDGQELNGRNIRVSFA 110
S A AM+G+ L+GR IRV A
Sbjct: 61 SDAMRAMNGESLDGRQIRVDHA 82
>TAIR|locus:2049359 [details] [associations]
symbol:GRP7 "AT2G21660" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0009409 "response
to cold" evidence=IGI;IEP] [GO:0009414 "response to water
deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
evidence=IEP;RCA] [GO:0046686 "response to cadmium ion"
evidence=IEP;RCA] [GO:0010501 "RNA secondary structure unwinding"
evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IMP;IDA] [GO:0005777
"peroxisome" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0010119 "regulation of stomatal movement"
evidence=IMP] [GO:0009507 "chloroplast" evidence=IDA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA;IMP] [GO:0010043 "response to zinc ion" evidence=IEP]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0048046 "apoplast" evidence=IDA] [GO:0006094
"gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
evidence=RCA] [GO:0006833 "water transport" evidence=RCA]
[GO:0006972 "hyperosmotic response" evidence=RCA] [GO:0007030
"Golgi organization" evidence=RCA] [GO:0007623 "circadian rhythm"
evidence=IEP;RCA;TAS] [GO:0009266 "response to temperature
stimulus" evidence=RCA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0009506 GO:GO:0005634
GO:GO:0009507 GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0005777 GO:GO:0010119 GO:GO:0000166 GO:GO:0010043
GO:GO:0048046 GO:GO:0007623 GO:GO:0009651 GO:GO:0009409
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003690
GO:GO:0003697 GO:GO:0006406 GO:GO:0010228 eggNOG:COG0724
GO:GO:0000380 HOGENOM:HOG000276232 GO:GO:0010501 GO:GO:0032508
EMBL:AC007119 UniGene:At.22672 UniGene:At.23628 EMBL:Z14987
EMBL:L00648 EMBL:L04172 EMBL:AF428381 EMBL:AY054284 EMBL:AY042826
EMBL:AY072523 EMBL:AK318968 EMBL:AY085214 IPI:IPI00523161
IPI:IPI00542675 PIR:S30147 RefSeq:NP_179760.1 UniGene:At.24279
UniGene:At.72988 ProteinModelPortal:Q03250 SMR:Q03250 IntAct:Q03250
MINT:MINT-1163877 STRING:Q03250 PaxDb:Q03250 PRIDE:Q03250
ProMEX:Q03250 EnsemblPlants:AT2G21660.1 GeneID:816705
KEGG:ath:AT2G21660 TAIR:At2g21660 InParanoid:Q03250 OMA:SQHEDGH
ProtClustDB:CLSN2913158 Genevestigator:Q03250 Uniprot:Q03250
Length = 176
Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
Identities = 38/79 (48%), Positives = 59/79 (74%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
+ FVGGL+W TDD +L+ AF+ +GD+ ++K+I +RE+G+SRGFGFVT+ ++ A
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 95 MDGQELNGRNIRVSFANDR 113
M+GQ+L+GR+I V+ A R
Sbjct: 69 MNGQDLDGRSITVNEAQSR 87
>UNIPROTKB|P98179 [details] [associations]
symbol:RBM3 "Putative RNA-binding protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
"dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
"large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
Length = 157
Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
Identities = 42/82 (51%), Positives = 61/82 (74%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
MS + KLFVGGL++ TD+ +L++ FS+FG I+E V+ +RE+ +SRGFGF+T+ + E A
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 89 SSAQSAMDGQELNGRNIRVSFA 110
S A AM+G+ L+GR IRV A
Sbjct: 61 SVAMRAMNGESLDGRQIRVDHA 82
>RGD|620145 [details] [associations]
symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
evidence=ISO] [GO:0006417 "regulation of translation"
evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
[GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
Genevestigator:Q925G0 Uniprot:Q925G0
Length = 155
Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
Identities = 41/82 (50%), Positives = 60/82 (73%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
MS + KLFVGGL++ TD+ +L++ FS+FG I+E V+ +RE+ +SRGFGF+T+ + E A
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 89 SSAQSAMDGQELNGRNIRVSFA 110
S AM+G+ L+GR IRV A
Sbjct: 61 SDVMRAMNGESLDGRQIRVDHA 82
>ASPGD|ASPL0000040642 [details] [associations]
symbol:AN2989 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
Uniprot:C8VIY5
Length = 128
Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
Identities = 41/80 (51%), Positives = 56/80 (70%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
KLF+GGL+W T D L+E FS +G I EA V+ +R++ +SRGFGFV + S A +A A
Sbjct: 3 KLFIGGLAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAMGA 62
Query: 95 MDGQELNGRNIRVSFANDRP 114
M+ QE +GR IRV A++RP
Sbjct: 63 MNNQEFDGRIIRVDKASERP 82
>UNIPROTKB|E2R771 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
Uniprot:E2R771
Length = 162
Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 41/82 (50%), Positives = 59/82 (71%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
MS + KLFVGGL++ TD+ +L++ F +FG I+E V+ +RE+ +SRGFGF+T+ E A
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHA 60
Query: 89 SSAQSAMDGQELNGRNIRVSFA 110
S A AM+G+ L+GR IRV A
Sbjct: 61 SDAMRAMNGESLDGRQIRVDHA 82
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 41/87 (47%), Positives = 62/87 (71%)
Query: 24 NAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYD 83
N+ + + KLF+GGLS+ T + SL+EAFS +G I + VI +RE+ +SRGFGFVT++
Sbjct: 13 NSEVIIMSDEGKLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFE 72
Query: 84 SNESASSAQSAMDGQELNGRNIRVSFA 110
+ E A A +AM+G++++GR IRV A
Sbjct: 73 NPEDAKDAMAAMNGKQVDGRMIRVDEA 99
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
Identities = 43/89 (48%), Positives = 61/89 (68%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
MS + KLFVGGL++ T + SL++ FS +G + E V+ +RES +SRGFGFVT+++ E A
Sbjct: 1 MSCDEGKLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDA 60
Query: 89 SSAQSAMDGQELNGRNIRVSFA----NDR 113
A AM+G+ ++GR IRV A NDR
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSNDR 89
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
Identities = 39/82 (47%), Positives = 60/82 (73%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
M+ + KLFVGGLS+ T++ SL++ FS +G I+E V+ +RE+ +SRGFGFVT+++ + A
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 89 SSAQSAMDGQELNGRNIRVSFA 110
A AM+G+ ++GR IRV A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQA 82
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
Identities = 39/82 (47%), Positives = 60/82 (73%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
M+ + KLFVGGLS+ T++ SL++ FS +G I+E V+ +RE+ +SRGFGFVT+++ + A
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 89 SSAQSAMDGQELNGRNIRVSFA 110
A AM+G+ ++GR IRV A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQA 82
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
Identities = 39/82 (47%), Positives = 60/82 (73%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
M+ + KLFVGGLS+ T++ SL++ FS +G I+E V+ +RE+ +SRGFGFVT+++ + A
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 89 SSAQSAMDGQELNGRNIRVSFA 110
A AM+G+ ++GR IRV A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQA 82
>UNIPROTKB|B4E2X2 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC004221 HOVERGEN:HBG107480 EMBL:AC004258 UniGene:Hs.618145
UniGene:Hs.634522 HGNC:HGNC:1982 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:AK304470 IPI:IPI00909097
SMR:B4E2X2 STRING:B4E2X2 Ensembl:ENST00000413636 UCSC:uc010xgl.1
Uniprot:B4E2X2
Length = 263
Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
Identities = 39/82 (47%), Positives = 60/82 (73%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
M+ + KLFVGGLS+ T++ SL++ FS +G I+E V+ +RE+ +SRGFGFVT+++ + A
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 89 SSAQSAMDGQELNGRNIRVSFA 110
A AM+G+ ++GR IRV A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQA 82
>UNIPROTKB|D6W5Y5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471139 EMBL:AC004221 EMBL:AC004258 IPI:IPI00641579
UniGene:Hs.618145 UniGene:Hs.634522 HGNC:HGNC:1982
HOGENOM:HOG000276232 ChiTaRS:CIRBP ProteinModelPortal:D6W5Y5
PRIDE:D6W5Y5 Ensembl:ENST00000587323 Ensembl:ENST00000587896
Ensembl:ENST00000588230 Ensembl:ENST00000589710 ArrayExpress:D6W5Y5
Bgee:D6W5Y5 Uniprot:D6W5Y5
Length = 297
Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
Identities = 39/82 (47%), Positives = 60/82 (73%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
M+ + KLFVGGLS+ T++ SL++ FS +G I+E V+ +RE+ +SRGFGFVT+++ + A
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 89 SSAQSAMDGQELNGRNIRVSFA 110
A AM+G+ ++GR IRV A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQA 82
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
Identities = 39/82 (47%), Positives = 60/82 (73%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
M+ + KLFVGGLS+ T++ SL++ FS +G I+E V+ +RE+ +SRGFGFVT+++ + A
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 89 SSAQSAMDGQELNGRNIRVSFA 110
A AM+G+ ++GR IRV A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQA 82
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
Identities = 39/82 (47%), Positives = 60/82 (73%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
M+ + KLFVGGLS+ T++ SL++ FS +G I+E V+ +RE+ +SRGFGFVT+++ + A
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 89 SSAQSAMDGQELNGRNIRVSFA 110
A AM+G+ ++GR IRV A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQA 82
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
Identities = 39/82 (47%), Positives = 60/82 (73%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
M+ + KLFVGGLS+ T++ SL++ FS +G I+E V+ +RE+ +SRGFGFVT+++ + A
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 89 SSAQSAMDGQELNGRNIRVSFA 110
A AM+G+ ++GR IRV A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQA 82
>UNIPROTKB|K7EQR7 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
Length = 202
Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
Identities = 39/82 (47%), Positives = 60/82 (73%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
M+ + KLFVGGLS+ T++ SL++ FS +G I+E V+ +RE+ +SRGFGFVT+++ + A
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 89 SSAQSAMDGQELNGRNIRVSFA 110
A AM+G+ ++GR IRV A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQA 82
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
Identities = 39/82 (47%), Positives = 60/82 (73%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
M+ + KLFVGGLS+ T++ SL++ FS +G I+E V+ +RE+ +SRGFGFVT+++ + A
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 89 SSAQSAMDGQELNGRNIRVSFA 110
A AM+G+ ++GR IRV A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQA 82
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
Identities = 39/82 (47%), Positives = 60/82 (73%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
M+ + KLFVGGLS+ T++ SL++ FS +G I+E V+ +RE+ +SRGFGFVT+++ + A
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 89 SSAQSAMDGQELNGRNIRVSFA 110
A AM+G+ ++GR IRV A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQA 82
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
Identities = 39/82 (47%), Positives = 60/82 (73%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
M+ + KLFVGGLS+ T++ SL++ FS +G I+E V+ +RE+ +SRGFGFVT+++ + A
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 89 SSAQSAMDGQELNGRNIRVSFA 110
A AM+G+ ++GR IRV A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQA 82
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
Identities = 39/82 (47%), Positives = 60/82 (73%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
M+ + KLFVGGLS+ T++ SL++ FS +G I+E V+ +RE+ +SRGFGFVT+++ + A
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 89 SSAQSAMDGQELNGRNIRVSFA 110
A AM+G+ ++GR IRV A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQA 82
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
Identities = 38/79 (48%), Positives = 59/79 (74%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
M+ + KLFVGGLS+ T++ SL++ FS +G I+E V+ +RE+ +SRGFGFVT+++ + A
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 89 SSAQSAMDGQELNGRNIRV 107
A AM+G+ ++GR IRV
Sbjct: 61 KDAMMAMNGKSVDGRQIRV 79
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 38/82 (46%), Positives = 60/82 (73%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
M+ + KLFVGGLS+ T++ +L++ FS +G I+E V+ +RE+ +SRGFGFVT+++ + A
Sbjct: 1 MASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 89 SSAQSAMDGQELNGRNIRVSFA 110
A AM+G+ ++GR IRV A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQA 82
>UNIPROTKB|Q9PTX2 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
"response to cold" evidence=ISS] [GO:0009790 "embryo development"
evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
[GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
"neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
evidence=IEP] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
Length = 164
Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 43/89 (48%), Positives = 60/89 (67%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
MS + KLFVGGLS+ TD+ L+ FS +G I E V+ +RE+ +SRGFGFVT+++ E A
Sbjct: 1 MSCDEGKLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDA 60
Query: 89 SSAQSAMDGQELNGRNIRVSFA----NDR 113
A + M+G+ ++GR IRV A NDR
Sbjct: 61 KDAMAGMNGKTVDGRQIRVDQAGKSSNDR 89
>MGI|MGI:893588 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
"negative regulation of translation" evidence=IDA] [GO:0030371
"translation repressor activity" evidence=IDA] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
GermOnline:ENSMUSG00000045193 Uniprot:P60824
Length = 172
Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 38/82 (46%), Positives = 60/82 (73%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
M+ + KLFVGGLS+ T++ +L++ FS +G I+E V+ +RE+ +SRGFGFVT+++ + A
Sbjct: 1 MASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 89 SSAQSAMDGQELNGRNIRVSFA 110
A AM+G+ ++GR IRV A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQA 82
>RGD|620756 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030371 "translation repressor activity" evidence=ISO;ISS]
[GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
"positive regulation of translation" evidence=ISO;ISS] [GO:0048255
"mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
Length = 172
Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 38/82 (46%), Positives = 60/82 (73%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
M+ + KLFVGGLS+ T++ +L++ FS +G I+E V+ +RE+ +SRGFGFVT+++ + A
Sbjct: 1 MASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 89 SSAQSAMDGQELNGRNIRVSFA 110
A AM+G+ ++GR IRV A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQA 82
>TAIR|locus:2079276 [details] [associations]
symbol:ATRZ-1A species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0009409 "response to cold" evidence=IMP] [GO:0009631 "cold
acclimation" evidence=IGI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0009631
GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AP001298 HOGENOM:HOG000276232
UniGene:At.48707 HSSP:Q61474 KO:K12885 EMBL:AY054613 EMBL:AF424613
EMBL:AY072457 EMBL:AK221725 EMBL:AK227088 IPI:IPI00530350
RefSeq:NP_189273.1 ProteinModelPortal:Q9LIN3 SMR:Q9LIN3
IntAct:Q9LIN3 STRING:Q9LIN3 PRIDE:Q9LIN3 EnsemblPlants:AT3G26420.1
GeneID:822246 KEGG:ath:AT3G26420 TAIR:At3g26420 InParanoid:Q9LIN3
OMA:SSKDDRY PhylomeDB:Q9LIN3 ProtClustDB:CLSN2723027
Genevestigator:Q9LIN3 Uniprot:Q9LIN3
Length = 245
Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 37/83 (44%), Positives = 58/83 (69%)
Query: 29 MSQS-QTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNES 87
MS+ + + F+GGL+W T D L++AF +G + EAKV+ ++ SG+SRGFGF+T+D ++
Sbjct: 1 MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60
Query: 88 ASSAQSAMDGQELNGRNIRVSFA 110
A +AM+G +L+GR I V A
Sbjct: 61 MDEAIAAMNGMDLDGRTITVDKA 83
>UNIPROTKB|H9KZV5 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
Length = 190
Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 38/82 (46%), Positives = 59/82 (71%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
M+ + KL VGGLS+ T++ SL++ FS +G I+E V+ +RE+ +SRGFGFVT+++ + A
Sbjct: 1 MALDEGKLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 89 SSAQSAMDGQELNGRNIRVSFA 110
A AM+G+ ++GR IRV A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQA 82
>UNIPROTKB|H9L0U4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
Length = 167
Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 38/82 (46%), Positives = 59/82 (71%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
M+ + KL VGGLS+ T++ SL++ FS +G I+E V+ +RE+ +SRGFGFVT+++ + A
Sbjct: 1 MALDEGKLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 89 SSAQSAMDGQELNGRNIRVSFA 110
A AM+G+ ++GR IRV A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQA 82
>UNIPROTKB|H9L3B3 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
Length = 172
Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 38/82 (46%), Positives = 59/82 (71%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
M+ + KL VGGLS+ T++ SL++ FS +G I+E V+ +RE+ +SRGFGFVT+++ + A
Sbjct: 1 MALDEGKLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 89 SSAQSAMDGQELNGRNIRVSFA 110
A AM+G+ ++GR IRV A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQA 82
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 39/95 (41%), Positives = 60/95 (63%)
Query: 18 PKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGF 77
PK +R M+ SQ K++VG LS+ L+ F +G+I EAK+I +RE+G+S+GF
Sbjct: 2 PKHFYFYFLRKMTMSQNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGF 61
Query: 78 GFVTYDSNESASSAQSAMDGQELNGRNIRVSFAND 112
F+TY + ++A A S +G +L GR IRV+ A +
Sbjct: 62 AFITYGTQDAAQEAVSKANGIDLQGRKIRVNIARE 96
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 39/95 (41%), Positives = 60/95 (63%)
Query: 18 PKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGF 77
PK +R M+ SQ K++VG LS+ L+ F +G+I EAK+I +RE+G+S+GF
Sbjct: 2 PKHFYFYFLRKMTMSQNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGF 61
Query: 78 GFVTYDSNESASSAQSAMDGQELNGRNIRVSFAND 112
F+TY + ++A A S +G +L GR IRV+ A +
Sbjct: 62 AFITYGTQDAAQEAVSKANGIDLQGRKIRVNIARE 96
>TAIR|locus:2119505 [details] [associations]
symbol:AT4G13860 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 HOGENOM:HOG000276232
UniGene:At.33330 EMBL:BT014844 IPI:IPI00523584 RefSeq:NP_193122.2
ProteinModelPortal:Q6ID29 SMR:Q6ID29 PRIDE:Q6ID29
EnsemblPlants:AT4G13860.1 GeneID:827020 KEGG:ath:AT4G13860
TAIR:At4g13860 InParanoid:Q6ID29 OMA:KIEEMFL PhylomeDB:Q6ID29
Genevestigator:Q6ID29 Uniprot:Q6ID29
Length = 87
Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
Identities = 38/74 (51%), Positives = 54/74 (72%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQS 93
T+++VG LS T D L+EAFS +G++ +A V+ +R + +SRGFGFVTY S+ A +A S
Sbjct: 3 TRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVS 62
Query: 94 AMDGQELNGRNIRV 107
MDG+ELNGR + V
Sbjct: 63 GMDGKELNGRRVSV 76
>TAIR|locus:2160752 [details] [associations]
symbol:AT5G06210 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AP002544 HOGENOM:HOG000276232
HSSP:Q61474 EMBL:AY062714 EMBL:AY093349 EMBL:AY087577
IPI:IPI00530408 RefSeq:NP_196239.1 UniGene:At.27256
ProteinModelPortal:Q9FFZ6 SMR:Q9FFZ6 STRING:Q9FFZ6 PaxDb:Q9FFZ6
PRIDE:Q9FFZ6 EnsemblPlants:AT5G06210.1 GeneID:830508
KEGG:ath:AT5G06210 TAIR:At5g06210 InParanoid:Q9FFZ6 OMA:SDRSKGF
PhylomeDB:Q9FFZ6 ProtClustDB:CLSN2686837 ArrayExpress:Q9FFZ6
Genevestigator:Q9FFZ6 Uniprot:Q9FFZ6
Length = 146
Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
Identities = 47/110 (42%), Positives = 68/110 (61%)
Query: 7 LGMLVRQNGQAPKA-SLIN--AVRFMSQSQ---TKLFVGGLSWGTDDSSLKEAFSNFGDI 60
+ L R G+ K+ LIN A F +Q + +KLF+GGLS+ T + L EAFS G +
Sbjct: 1 MAALARIGGRHLKSVCLINSSASCFFTQRRGVASKLFIGGLSFCTTEQGLSEAFSKCGQV 60
Query: 61 TEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 110
EA+++ +R S +S+GFGFVT+ S + A A +GQ+LNGR I V +A
Sbjct: 61 VEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYA 110
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
Identities = 36/76 (47%), Positives = 57/76 (75%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
KLF+GGL++ T++ SL++ FS +G I+E V+ +RE+ +SRGFGFVT+++ + A A A
Sbjct: 6 KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMA 65
Query: 95 MDGQELNGRNIRVSFA 110
M+G+ ++GR IRV A
Sbjct: 66 MNGKAVDGRQIRVDQA 81
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 38/106 (35%), Positives = 61/106 (57%)
Query: 8 GMLVRQNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVIT 67
G + N AP+ S + + +++VG L W D L+ FS G + +A+V++
Sbjct: 181 GRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVS 240
Query: 68 ERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 113
+RE+G+SRGFGFV + + A +A+DGQ L GR I+V+ A +R
Sbjct: 241 DRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAEER 286
Score = 141 (54.7 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 31/81 (38%), Positives = 45/81 (55%)
Query: 33 QTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQ 92
+ KLFVG L + D +L F G + ++VI R++ +SRGFGFVT + E A A
Sbjct: 112 EAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAV 171
Query: 93 SAMDGQELNGRNIRVSFANDR 113
+ E+NGR + V+ A R
Sbjct: 172 EKFNSFEVNGRRLTVNRAAPR 192
>UNIPROTKB|E2R228 [details] [associations]
symbol:E2R228 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AAEX03026350
Ensembl:ENSCAFT00000025375 OMA:SDVEYRC Uniprot:E2R228
Length = 149
Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 37/82 (45%), Positives = 58/82 (70%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
MS + LF+GGL++ T++ +L++ FS+FG I+E V+ +RE+ +SRGF F+T+ + E A
Sbjct: 1 MSSEEGMLFLGGLNFNTNEQALEDHFSSFGPISEVVVVKDRETQRSRGFCFITFTNPEHA 60
Query: 89 SSAQSAMDGQELNGRNIRVSFA 110
S A M+G+ L+GR IRV A
Sbjct: 61 SDAMRPMNGKSLDGRQIRVDHA 82
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 37/76 (48%), Positives = 53/76 (69%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
KLF+GGLS+ T + SL++AFS +G IT V RE+ +SRGFGFVT+++ + A A
Sbjct: 6 KLFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEG 65
Query: 95 MDGQELNGRNIRVSFA 110
M+G+ ++GR IRV A
Sbjct: 66 MNGKSVDGRTIRVDEA 81
>UNIPROTKB|I3LH22 [details] [associations]
symbol:LOC100514264 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:CU915617
Ensembl:ENSSSCT00000023009 OMA:QALEDHI Uniprot:I3LH22
Length = 161
Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
Identities = 36/82 (43%), Positives = 57/82 (69%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
MS + KLFVGGL++ +D +L++ S+F I+E ++ +RE+ +SRGFGF+T+ + E A
Sbjct: 1 MSSEEGKLFVGGLNFNSDKQALEDHISSFRPISEVVIVKDRETQRSRGFGFITFTNPEHA 60
Query: 89 SSAQSAMDGQELNGRNIRVSFA 110
S+ AM+G+ L+GR I V A
Sbjct: 61 SNVMRAMNGESLDGRQIHVDHA 82
>UNIPROTKB|O93235 [details] [associations]
symbol:cirbp-a "Cold-inducible RNA-binding protein A"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
"response to cold" evidence=IEP] [GO:0009411 "response to UV"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
"cell migration" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0019899 "enzyme binding"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
"translation repressor activity" evidence=ISS] [GO:0034063 "stress
granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0048793 "pronephros development"
evidence=IEP;IMP] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
field specification" evidence=IMP] [GO:0005840 "ribosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
Length = 166
Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
Identities = 35/76 (46%), Positives = 57/76 (75%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
KLF+GGL++ T++ L++AF+ +G I+E V+ +RE+ +SRGFGFVT+++ + A A A
Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65
Query: 95 MDGQELNGRNIRVSFA 110
M+G+ ++GR IRV A
Sbjct: 66 MNGKSVDGRQIRVDQA 81
>TAIR|locus:2049816 [details] [associations]
symbol:AT2G37510 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AC005896 GO:GO:0003676 HOGENOM:HOG000276232
HSSP:P11940 EMBL:AY084740 EMBL:BT028941 IPI:IPI00545899 PIR:F84793
RefSeq:NP_181287.1 UniGene:At.37414 ProteinModelPortal:Q8S8L4
SMR:Q8S8L4 PRIDE:Q8S8L4 EnsemblPlants:AT2G37510.1 GeneID:818327
KEGG:ath:AT2G37510 TAIR:At2g37510 eggNOG:NOG305672
InParanoid:Q8S8L4 OMA:NKTIGWC PhylomeDB:Q8S8L4
ProtClustDB:CLSN2683075 ArrayExpress:Q8S8L4 Genevestigator:Q8S8L4
Uniprot:Q8S8L4
Length = 142
Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
Identities = 44/115 (38%), Positives = 68/115 (59%)
Query: 1 MAFCGKLGMLVRQNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDI 60
MAF LV + + + R + + +LFV GLS T + L++AF++FG +
Sbjct: 1 MAFVSSFRRLVAGSSSLLSSPSLCVRRCSTLTSPRLFVSGLSRLTTNEKLQDAFASFGQL 60
Query: 61 TEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRPP 115
+A+VIT+R+SG+S+GFGFVTY + E A A++ M+ + L+G I V A R P
Sbjct: 61 VDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGWVIFVDPARPREP 115
>TAIR|locus:2202740 [details] [associations]
symbol:AT1G60000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC005966 HOGENOM:HOG000276232 HSSP:P33240
EMBL:AF348590 EMBL:AY088142 EMBL:AK316953 IPI:IPI00532959
PIR:C96624 RefSeq:NP_176208.1 UniGene:At.17057
ProteinModelPortal:Q9ZUJ3 SMR:Q9ZUJ3 STRING:Q9ZUJ3 PRIDE:Q9ZUJ3
EnsemblPlants:AT1G60000.1 GeneID:842294 KEGG:ath:AT1G60000
TAIR:At1g60000 InParanoid:Q9ZUJ3 OMA:NVEDCNI PhylomeDB:Q9ZUJ3
ProtClustDB:CLSN2913540 ArrayExpress:Q9ZUJ3 Genevestigator:Q9ZUJ3
Uniprot:Q9ZUJ3
Length = 258
Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 42/108 (38%), Positives = 60/108 (55%)
Query: 7 LGMLVRQN-GQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKV 65
LG ++ N PK N +++ KLFVG LSW SL AF GD+ A+V
Sbjct: 152 LGRALKVNFADKPKP---NKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARV 208
Query: 66 ITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 113
+ + ++G+SRG+GFV Y S +A ++DG EL GR IRV+ A +
Sbjct: 209 VFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQGK 256
Score = 139 (54.0 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 29/81 (35%), Positives = 48/81 (59%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQS 93
TKL+ G L + D ++L + +F + +V+ R++G+SRGF FVT + E +
Sbjct: 85 TKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIID 144
Query: 94 AMDGQELNGRNIRVSFANDRP 114
+DG E GR ++V+FA D+P
Sbjct: 145 NLDGTEYLGRALKVNFA-DKP 164
>UNIPROTKB|I3LQ36 [details] [associations]
symbol:I3LQ36 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:CU210877
Ensembl:ENSSSCT00000005974 Uniprot:I3LQ36
Length = 161
Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 37/82 (45%), Positives = 57/82 (69%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
MS + KLFVGGL++ T + +L++ FS+FG I E V+ + E+ +S+GFGF+T+ + E A
Sbjct: 1 MSSEEGKLFVGGLNFNTYEQALEDHFSSFGPIFEVVVVKDWETRRSQGFGFITFTNPEHA 60
Query: 89 SSAQSAMDGQELNGRNIRVSFA 110
S+A A +G+ L+GR I V A
Sbjct: 61 SNAMRATNGESLDGRQIHVDHA 82
>UNIPROTKB|G4MY43 [details] [associations]
symbol:MGG_01268 "Nuclear localization sequence binding
protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
KEGG:mgr:MGG_01268 Uniprot:G4MY43
Length = 486
Score = 193 (73.0 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 37/84 (44%), Positives = 52/84 (61%)
Query: 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESAS 89
S + LFVG LSW DD+ L E F G +T A+VIT+RESG+S+GFG+V + + E A
Sbjct: 235 SDKPSTLFVGNLSWNVDDAMLAEEFKFCGTVTSARVITDRESGRSKGFGYVDFATPEEAE 294
Query: 90 SAQSAMDGQELNGRNIRVSFANDR 113
A G ++GR I+V F+ +
Sbjct: 295 KAHGEKQGAFIDGREIKVDFSTGK 318
Score = 188 (71.2 bits), Expect = 6.1e-14, P = 6.1e-14
Identities = 36/85 (42%), Positives = 56/85 (65%)
Query: 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASS 90
+S T LFVG L + D+ S+ FS ++ ++ TE+ESG+ +GFG+VT++S E A S
Sbjct: 340 ESDT-LFVGNLPFDADEDSVGAFFSEVAEVKSLRLPTEQESGRRKGFGYVTFNSVEDAKS 398
Query: 91 AQSAMDGQELNGRNIRVSFANDRPP 115
A ++GQ +NGRN R+ ++ RPP
Sbjct: 399 AFEQLNGQSINGRNCRLDYSTPRPP 423
>TAIR|locus:2172144 [details] [associations]
symbol:AT5G54580 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005739
"mitochondrion" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB016879 HOGENOM:HOG000276232
HSSP:Q61474 UniGene:At.52694 EMBL:AY072101 EMBL:AY096589
EMBL:AY085234 IPI:IPI00521049 RefSeq:NP_200269.1 UniGene:At.20805
ProteinModelPortal:Q9FIU6 SMR:Q9FIU6 IntAct:Q9FIU6 PaxDb:Q9FIU6
PRIDE:Q9FIU6 EnsemblPlants:AT5G54580.1 GeneID:835546
KEGG:ath:AT5G54580 TAIR:At5g54580 eggNOG:NOG324885
InParanoid:Q9FIU6 OMA:IKGMDGK PhylomeDB:Q9FIU6
ProtClustDB:CLSN2696829 ArrayExpress:Q9FIU6 Genevestigator:Q9FIU6
Uniprot:Q9FIU6
Length = 156
Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 39/97 (40%), Positives = 58/97 (59%)
Query: 17 APKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRG 76
+P+A R ++ T LFV GLS T L+ AF+ FG++ +AKV+T+R SG S+G
Sbjct: 39 SPQAESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKG 98
Query: 77 FGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 113
FGFV Y + E ++ + MDG+ L+G I +A R
Sbjct: 99 FGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEYARPR 135
>CGD|CAL0005232 [details] [associations]
symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
Uniprot:Q5AB84
Length = 400
Score = 189 (71.6 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 35/85 (41%), Positives = 53/85 (62%)
Query: 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESAS 89
++ LFVG LSW DD+ LK F + G + A+VI ER +GKSRG+G+V ++S +A
Sbjct: 164 TEEPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAE 223
Query: 90 SAQSAMDGQELNGRNIRVSFANDRP 114
A M G+E++GR I + + +P
Sbjct: 224 KALEEMQGKEIDGRPINLDMSTGKP 248
Score = 136 (52.9 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 25/78 (32%), Positives = 46/78 (58%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95
LF+G LS+ + +L F +G++ +V T ++ + +GFG+V + S + A +A AM
Sbjct: 272 LFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAM 331
Query: 96 DGQELNGRNIRVSFANDR 113
+G+ + GR R+ F+ R
Sbjct: 332 NGEYIEGRPCRLDFSTPR 349
>UNIPROTKB|Q5AB84 [details] [associations]
symbol:NSR1 "Potential nuclear localization sequence
binding protein Nsr1p" species:237561 "Candida albicans SC5314"
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
KEGG:cal:CaO19.6090 Uniprot:Q5AB84
Length = 400
Score = 189 (71.6 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 35/85 (41%), Positives = 53/85 (62%)
Query: 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESAS 89
++ LFVG LSW DD+ LK F + G + A+VI ER +GKSRG+G+V ++S +A
Sbjct: 164 TEEPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAE 223
Query: 90 SAQSAMDGQELNGRNIRVSFANDRP 114
A M G+E++GR I + + +P
Sbjct: 224 KALEEMQGKEIDGRPINLDMSTGKP 248
Score = 136 (52.9 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 25/78 (32%), Positives = 46/78 (58%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95
LF+G LS+ + +L F +G++ +V T ++ + +GFG+V + S + A +A AM
Sbjct: 272 LFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAM 331
Query: 96 DGQELNGRNIRVSFANDR 113
+G+ + GR R+ F+ R
Sbjct: 332 NGEYIEGRPCRLDFSTPR 349
>UNIPROTKB|K7ELT6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000590347 Ensembl:ENST00000591055
Uniprot:K7ELT6
Length = 135
Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 33/70 (47%), Positives = 52/70 (74%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
M+ + KLFVGGLS+ T++ SL++ FS +G I+E V+ +RE+ +SRGFGFVT+++ + A
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 89 SSAQSAMDGQ 98
A AM+G+
Sbjct: 61 KDAMMAMNGK 70
>UNIPROTKB|K7ELV6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588344 Uniprot:K7ELV6
Length = 70
Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 33/70 (47%), Positives = 52/70 (74%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
M+ + KLFVGGLS+ T++ SL++ FS +G I+E V+ +RE+ +SRGFGFVT+++ + A
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 89 SSAQSAMDGQ 98
A AM+G+
Sbjct: 61 KDAMMAMNGK 70
>TAIR|locus:2079874 [details] [associations]
symbol:CP33 "chloroplast RNA-binding protein 33"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0048481
"ovule development" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009579 HSSP:P19339
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:AL050300 UniGene:At.65006
UniGene:At.71002 EMBL:AY039607 EMBL:AY078022 EMBL:AY085279
EMBL:D31714 IPI:IPI00543679 PIR:S53494 RefSeq:NP_190806.1
ProteinModelPortal:Q39061 SMR:Q39061 STRING:Q39061 PaxDb:Q39061
PRIDE:Q39061 EnsemblPlants:AT3G52380.1 GeneID:824403
KEGG:ath:AT3G52380 TAIR:At3g52380 InParanoid:Q39061 OMA:FISFESA
PhylomeDB:Q39061 ProtClustDB:CLSN2684767 Genevestigator:Q39061
Uniprot:Q39061
Length = 329
Score = 182 (69.1 bits), Expect = 9.4e-14, P = 9.4e-14
Identities = 34/82 (41%), Positives = 54/82 (65%)
Query: 32 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSA 91
S K++ G L W LK+AF + + AKVI ER +G+SRGFGF++++S E+ SA
Sbjct: 217 SPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSA 276
Query: 92 QSAMDGQELNGRNIRVSFANDR 113
+ M+G E+ GR +R++ A++R
Sbjct: 277 LATMNGVEVEGRALRLNLASER 298
Score = 139 (54.0 bits), Expect = 5.8e-09, P = 5.8e-09
Identities = 25/80 (31%), Positives = 45/80 (56%)
Query: 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESAS 89
S + +L+VG L + S L + F G + + +++ ++ + +SRGFGFVT S E A
Sbjct: 112 SGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAK 171
Query: 90 SAQSAMDGQELNGRNIRVSF 109
A + ++ GR ++V+F
Sbjct: 172 EAMQMFNSSQIGGRTVKVNF 191
>UNIPROTKB|Q60A61 [details] [associations]
symbol:MCA1010 "RNA-binding protein" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
Length = 95
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 33/82 (40%), Positives = 58/82 (70%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQS 93
+KL+VG L++ D+ L+ F+ +G + A+V+ +R +G+SRGFGFV S++ A +A +
Sbjct: 3 SKLYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIA 62
Query: 94 AMDGQELNGRNIRVSFANDRPP 115
++G+E++GRN+ V+ A RPP
Sbjct: 63 GLNGKEMDGRNLMVNEA--RPP 82
>TAIR|locus:2032120 [details] [associations]
symbol:AT1G78260 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HSSP:P09651 HOGENOM:HOG000276232 eggNOG:NOG248750 EMBL:AY084982
EMBL:BT030002 IPI:IPI00529893 RefSeq:NP_565175.1 UniGene:At.43623
ProteinModelPortal:Q8LF90 SMR:Q8LF90 STRING:Q8LF90
EnsemblPlants:AT1G78260.1 GeneID:844161 KEGG:ath:AT1G78260
TAIR:At1g78260 InParanoid:Q8LF90 OMA:SPYYYGY PhylomeDB:Q8LF90
ProtClustDB:CLSN2689288 Genevestigator:Q8LF90 Uniprot:Q8LF90
Length = 287
Score = 178 (67.7 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 38/91 (41%), Positives = 58/91 (63%)
Query: 28 FMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNES 87
F + TK+FVGGL+W T ++ F FG+I EA +IT++ +GKS+G+GFVT+ ++S
Sbjct: 11 FGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDS 70
Query: 88 ASSAQS----AMDGQELNGRNIRVSFANDRP 114
A+ A + +DG++ N NI SF RP
Sbjct: 71 ATRAVADPNPVIDGRKANC-NI-ASFGRPRP 99
>TAIR|locus:2196521 [details] [associations]
symbol:AT1G22330 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AC068562 EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P09651 HOGENOM:HOG000276232
ProtClustDB:CLSN2689288 IPI:IPI00540466 PIR:B86356
RefSeq:NP_564168.2 UniGene:At.41608 ProteinModelPortal:Q9LME7
SMR:Q9LME7 STRING:Q9LME7 PRIDE:Q9LME7 EnsemblPlants:AT1G22330.1
GeneID:838839 KEGG:ath:AT1G22330 TAIR:At1g22330 InParanoid:Q9LME7
OMA:TESHAPQ PhylomeDB:Q9LME7 Genevestigator:Q9LME7 Uniprot:Q9LME7
Length = 291
Score = 178 (67.7 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 38/91 (41%), Positives = 58/91 (63%)
Query: 28 FMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNES 87
F + TK+FVGGL+W T ++ F FG+I EA +IT++ +GKS+G+GFVT+ ++S
Sbjct: 11 FGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDS 70
Query: 88 ASSAQS----AMDGQELNGRNIRVSFANDRP 114
A+ A + +DG++ N NI SF RP
Sbjct: 71 ATRAVADPNPVIDGRKANC-NI-ASFGRPRP 99
>UNIPROTKB|E1BLB7 [details] [associations]
symbol:RBM38 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0006978 "DNA damage response, signal transduction
by p53 class mediator resulting in transcription of p21 class
mediator" evidence=IEA] [GO:0006977 "DNA damage response, signal
transduction by p53 class mediator resulting in cell cycle arrest"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008285 GO:GO:0006977 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007050 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
GO:GO:0070935 GO:GO:0010830 GeneTree:ENSGT00390000002308 CTD:55544
OMA:VGYGYPA EMBL:DAAA02036351 IPI:IPI00696591 RefSeq:NP_001192952.1
UniGene:Bt.106613 ProteinModelPortal:E1BLB7
Ensembl:ENSBTAT00000010660 GeneID:533516 KEGG:bta:533516
NextBio:20876057 Uniprot:E1BLB7
Length = 239
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 37/84 (44%), Positives = 58/84 (69%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQS 93
TK+FVGGL + T D+SL++ F FGDI EA VIT+R++GKSRG+GFVT + A++ ++
Sbjct: 34 TKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMA--DRAAAERA 91
Query: 94 AMD-GQELNGR--NIRVSFANDRP 114
D ++GR N+ +++ +P
Sbjct: 92 CKDPNPNIDGRKANVNLAYLGAKP 115
>UNIPROTKB|A5GFN7 [details] [associations]
symbol:RNPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:CR956362 HOVERGEN:HBG108399
GeneTree:ENSGT00390000002308 UniGene:Ssc.29738
ProteinModelPortal:A5GFN7 STRING:A5GFN7 Ensembl:ENSSSCT00000033672
ArrayExpress:A5GFN7 Uniprot:A5GFN7
Length = 193
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 37/84 (44%), Positives = 58/84 (69%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQS 93
TK+FVGGL + T D+SL++ F FGDI EA VIT+R++GKSRG+GFVT + A++ ++
Sbjct: 34 TKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMA--DRAAAERA 91
Query: 94 AMD-GQELNGR--NIRVSFANDRP 114
D ++GR N+ +++ +P
Sbjct: 92 CKDPNPNIDGRKANVNLAYLGAKP 115
>UNIPROTKB|A5GFN8 [details] [associations]
symbol:RNPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0006978 "DNA damage response, signal transduction
by p53 class mediator resulting in transcription of p21 class
mediator" evidence=IEA] [GO:0006977 "DNA damage response, signal
transduction by p53 class mediator resulting in cell cycle arrest"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008285 GO:GO:0006977 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007050 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
HOGENOM:HOG000276232 GO:GO:0070935 GO:GO:0010830 EMBL:CR956362
HOVERGEN:HBG108399 GeneTree:ENSGT00390000002308 OrthoDB:EOG4DV5NS
CTD:55544 OMA:VGYGYPA UniGene:Ssc.29738 RefSeq:NP_001098782.1
SMR:A5GFN8 STRING:A5GFN8 Ensembl:ENSSSCT00000008216
GeneID:100125973 KEGG:ssc:100125973 Uniprot:A5GFN8
Length = 239
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 37/84 (44%), Positives = 58/84 (69%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQS 93
TK+FVGGL + T D+SL++ F FGDI EA VIT+R++GKSRG+GFVT + A++ ++
Sbjct: 34 TKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMA--DRAAAERA 91
Query: 94 AMD-GQELNGR--NIRVSFANDRP 114
D ++GR N+ +++ +P
Sbjct: 92 CKDPNPNIDGRKANVNLAYLGAKP 115
>ZFIN|ZDB-GENE-030131-5923 [details] [associations]
symbol:rbm38 "RNA binding motif protein 38"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-5923 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 HSSP:Q61474
HOVERGEN:HBG108399 EMBL:AB097829 IPI:IPI00861911 UniGene:Dr.80564
ProteinModelPortal:Q7T2V9 SMR:Q7T2V9 STRING:Q7T2V9
InParanoid:Q7T2V9 Uniprot:Q7T2V9
Length = 246
Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 37/83 (44%), Positives = 56/83 (67%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQS 93
TK+FVGGL + T D+SL++ F FGDI EA VIT+R++GKSRG+GFVT ++SA+
Sbjct: 25 TKIFVGGLPYHTTDASLRKYFETFGDIDEAVVITDRQTGKSRGYGFVTM-MDKSAAERAC 83
Query: 94 AMDGQELNGR--NIRVSFANDRP 114
++GR N+ +++ +P
Sbjct: 84 KDPNPIIDGRKANVNLAYLGAKP 106
>UNIPROTKB|E1BZ17 [details] [associations]
symbol:RBM24 "RNA-binding protein 24" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0010830 "regulation of
myotube differentiation" evidence=IEA] [GO:0043488 "regulation of
mRNA stability" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 GO:GO:0010830
GeneTree:ENSGT00390000002308 EMBL:AADN02027548 EMBL:AADN02027547
IPI:IPI00580084 ProteinModelPortal:E1BZ17
Ensembl:ENSGALT00000020752 OMA:ILHRSCL Uniprot:E1BZ17
Length = 245
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 38/84 (45%), Positives = 58/84 (69%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQS 93
TK+FVGGL + T DSSL++ F FGDI EA VIT+R++GKSRG+GFVT + A++ ++
Sbjct: 11 TKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMA--DRAAAERA 68
Query: 94 AMDGQEL-NGR--NIRVSFANDRP 114
D + +GR N+ +++ +P
Sbjct: 69 CKDPNPIIDGRKANVNLAYLGAKP 92
>UNIPROTKB|Q5ZJX4 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 GO:GO:0030154
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOGENOM:HOG000276232 HSSP:Q9H0Z9 HOVERGEN:HBG108399
OrthoDB:EOG4DV5NS eggNOG:NOG248750 EMBL:AJ720310 IPI:IPI00586902
UniGene:Gga.5690 ProteinModelPortal:Q5ZJX4 SMR:Q5ZJX4
InParanoid:Q5ZJX4 Uniprot:Q5ZJX4
Length = 215
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 38/84 (45%), Positives = 58/84 (69%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQS 93
TK+FVGGL + T DSSL++ F FGDI EA VIT+R++GKSRG+GFVT + A++ ++
Sbjct: 11 TKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMA--DRAAAERA 68
Query: 94 AMDGQEL-NGR--NIRVSFANDRP 114
D + +GR N+ +++ +P
Sbjct: 69 CKDPNPIIDGRKANVNLAYLGAKP 92
>UNIPROTKB|Q5ZMA3 [details] [associations]
symbol:RBM24 "RNA-binding protein 24" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043488
"regulation of mRNA stability" evidence=ISS] [GO:0010830
"regulation of myotube differentiation" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 eggNOG:COG0724
GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399 EMBL:AJ719481
IPI:IPI00971402 RefSeq:NP_001012881.1 UniGene:Gga.39322
ProteinModelPortal:Q5ZMA3 SMR:Q5ZMA3 STRING:Q5ZMA3 GeneID:420846
KEGG:gga:420846 CTD:221662 NextBio:20823702 Uniprot:Q5ZMA3
Length = 225
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 38/84 (45%), Positives = 58/84 (69%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQS 93
TK+FVGGL + T DSSL++ F FGDI EA VIT+R++GKSRG+GFVT + A++ ++
Sbjct: 11 TKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMA--DRAAAERA 68
Query: 94 AMDGQEL-NGR--NIRVSFANDRP 114
D + +GR N+ +++ +P
Sbjct: 69 CKDPNPIIDGRKANVNLAYLGAKP 92
>UNIPROTKB|F6VZ39 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109955
HGNC:HGNC:15818 IPI:IPI00927190 ProteinModelPortal:F6VZ39
SMR:F6VZ39 PRIDE:F6VZ39 Ensembl:ENST00000344785 ArrayExpress:F6VZ39
Bgee:F6VZ39 Uniprot:F6VZ39
Length = 123
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 37/84 (44%), Positives = 58/84 (69%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQS 93
TK+FVGGL + T D+SL++ F FGDI EA VIT+R++GKSRG+GFVT + A++ ++
Sbjct: 11 TKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMA--DRAAAERA 68
Query: 94 AMDGQEL-NGR--NIRVSFANDRP 114
D + +GR N+ +++ +P
Sbjct: 69 CKDPNPIIDGRKANVNLAYLGAKP 92
>UNIPROTKB|Q9H0Z9 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA;IDA] [GO:0010830 "regulation of myotube
differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005829 "cytosol" evidence=IEA;IDA]
[GO:0043484 "regulation of RNA splicing" evidence=IDA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IDA] [GO:0006977 "DNA damage
response, signal transduction by p53 class mediator resulting in
cell cycle arrest" evidence=IDA] [GO:0006978 "DNA damage response,
signal transduction by p53 class mediator resulting in
transcription of p21 class mediator" evidence=IDA] [GO:0007050
"cell cycle arrest" evidence=IDA] [GO:0008285 "negative regulation
of cell proliferation" evidence=IDA] [GO:0070935 "3'-UTR-mediated
mRNA stabilization" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CH471077 GO:GO:0008285
GO:GO:0030154 GO:GO:0006977 GO:GO:0008380 GO:GO:0000166
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0007050
GO:GO:0007049 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
eggNOG:COG0724 GO:GO:0070935 GO:GO:0010830 EMBL:AL109955
HOVERGEN:HBG108399 EMBL:AF432218 EMBL:X75314 EMBL:X75315
EMBL:BC018711 IPI:IPI00306057 IPI:IPI00374855 RefSeq:NP_059965.2
RefSeq:NP_906270.1 UniGene:Hs.236361 PDB:2CQD PDBsum:2CQD
ProteinModelPortal:Q9H0Z9 SMR:Q9H0Z9 IntAct:Q9H0Z9 STRING:Q9H0Z9
PhosphoSite:Q9H0Z9 DMDM:215273895 PaxDb:Q9H0Z9 DNASU:55544
Ensembl:ENST00000356208 Ensembl:ENST00000440234 GeneID:55544
KEGG:hsa:55544 UCSC:uc010zzj.2 CTD:55544 GeneCards:GC20P055966
H-InvDB:HIX0015939 HGNC:HGNC:15818 HPA:CAB017036 MIM:612428
neXtProt:NX_Q9H0Z9 PharmGKB:PA34449 InParanoid:Q9H0Z9 OMA:VGYGYPA
EvolutionaryTrace:Q9H0Z9 GenomeRNAi:55544 NextBio:59995
ArrayExpress:Q9H0Z9 Bgee:Q9H0Z9 CleanEx:HS_RBM38
Genevestigator:Q9H0Z9 GermOnline:ENSG00000132819 Uniprot:Q9H0Z9
Length = 239
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 37/84 (44%), Positives = 58/84 (69%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQS 93
TK+FVGGL + T D+SL++ F FGDI EA VIT+R++GKSRG+GFVT + A++ ++
Sbjct: 34 TKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMA--DRAAAERA 91
Query: 94 AMDGQEL-NGR--NIRVSFANDRP 114
D + +GR N+ +++ +P
Sbjct: 92 CKDPNPIIDGRKANVNLAYLGAKP 115
>UNIPROTKB|Q6GQD3 [details] [associations]
symbol:rbm24-a "RNA-binding protein 24-A" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0010830 "regulation of myotube differentiation" evidence=IMP]
[GO:0043488 "regulation of mRNA stability" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
GO:GO:0010830 EMBL:AF223427 EMBL:BC072812 RefSeq:NP_001080995.1
UniGene:Xl.12316 HSSP:Q9H0Z9 ProteinModelPortal:Q6GQD3 SMR:Q6GQD3
GeneID:394318 KEGG:xla:394318 CTD:394318 Xenbase:XB-GENE-866276
HOVERGEN:HBG108399 Uniprot:Q6GQD3
Length = 225
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 38/84 (45%), Positives = 58/84 (69%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQS 93
TK+FVGGL + T DSSL++ F FGDI EA VIT+R++GKSRG+GFVT + A++ ++
Sbjct: 11 TKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMA--DRAAAERA 68
Query: 94 AMDGQEL-NGR--NIRVSFANDRP 114
D + +GR N+ +++ +P
Sbjct: 69 CKDPNPIIDGRKANVNLAYLGAKP 92
>UNIPROTKB|Q6P8A7 [details] [associations]
symbol:rbm24 "RNA-binding protein 24" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0010830 "regulation of myotube differentiation"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730
GO:GO:0043488 HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9
HOVERGEN:HBG108399 CTD:221662 OrthoDB:EOG4DV5NS EMBL:BC061322
RefSeq:NP_989016.1 UniGene:Str.6492 ProteinModelPortal:Q6P8A7
SMR:Q6P8A7 STRING:Q6P8A7 GeneID:394612 KEGG:xtr:394612
Xenbase:XB-GENE-493647 eggNOG:NOG248750 InParanoid:Q6P8A7
Bgee:Q6P8A7 Uniprot:Q6P8A7
Length = 226
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 38/84 (45%), Positives = 58/84 (69%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQS 93
TK+FVGGL + T DSSL++ F FGDI EA VIT+R++GKSRG+GFVT + A++ ++
Sbjct: 11 TKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMA--DRAAAERA 68
Query: 94 AMDGQEL-NGR--NIRVSFANDRP 114
D + +GR N+ +++ +P
Sbjct: 69 CKDPNPIIDGRKANVNLAYLGAKP 92
>UNIPROTKB|Q9I8B3 [details] [associations]
symbol:rbm24-b "RNA-binding protein 24-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0010830 "regulation of myotube differentiation" evidence=ISS]
[GO:0043488 "regulation of mRNA stability" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399 EMBL:AJ271404
EMBL:BC044956 RefSeq:NP_001079578.1 UniGene:Xl.467
ProteinModelPortal:Q9I8B3 SMR:Q9I8B3 GeneID:379265 KEGG:xla:379265
CTD:379265 Xenbase:XB-GENE-6256347 Uniprot:Q9I8B3
Length = 224
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 38/84 (45%), Positives = 58/84 (69%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQS 93
TK+FVGGL + T DSSL++ F FGDI EA VIT+R++GKSRG+GFVT + A++ ++
Sbjct: 11 TKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMA--DRAAAERA 68
Query: 94 AMDGQEL-NGR--NIRVSFANDRP 114
D + +GR N+ +++ +P
Sbjct: 69 CKDPNPIIDGRKANVNLAYLGAKP 92
>UNIPROTKB|H7BY16 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC017104 HGNC:HGNC:7667
ChiTaRS:NCL ProteinModelPortal:H7BY16 PRIDE:H7BY16
Ensembl:ENST00000356936 Bgee:H7BY16 Uniprot:H7BY16
Length = 297
Score = 176 (67.0 bits), Expect = 2.9e-13, P = 2.9e-13
Identities = 41/106 (38%), Positives = 64/106 (60%)
Query: 8 GMLVRQNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVIT 67
G +R Q P+ S NA SQ LFV GLS T + +LKE+F G + A+++T
Sbjct: 175 GRAIRLELQGPRGSP-NA---RSQPSKTLFVKGLSEDTTEETLKESFD--GSV-RARIVT 227
Query: 68 ERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 113
+RE+G S+GFGFV ++S E A +A+ AM+ E++G + + +A +
Sbjct: 228 DRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 273
Score = 105 (42.0 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 26/85 (30%), Positives = 47/85 (55%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
+ +S+T L + LS+ + +L+E F T KV + ++GKS+G+ F+ + S E A
Sbjct: 107 LGESKT-LVLSNLSYSATEETLQEVFEK---ATFIKV-PQNQNGKSKGYAFIEFASFEDA 161
Query: 89 SSAQSAMDGQELNGRNIRVSFANDR 113
A ++ + +E+ GR IR+ R
Sbjct: 162 KEALNSCNKREIEGRAIRLELQGPR 186
>MGI|MGI:1889294 [details] [associations]
symbol:Rbm38 "RNA binding motif protein 38" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO;IMP]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005829 "cytosol" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006977 "DNA damage response, signal transduction
by p53 class mediator resulting in cell cycle arrest" evidence=ISO]
[GO:0006978 "DNA damage response, signal transduction by p53 class
mediator resulting in transcription of p21 class mediator"
evidence=ISO] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007050
"cell cycle arrest" evidence=ISO] [GO:0008285 "negative regulation
of cell proliferation" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IDA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1889294 GO:GO:0005829 GO:GO:0005634
GO:GO:0008285 GO:GO:0030154 GO:GO:0006977 GO:GO:0008380
GO:GO:0000166 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0007050 EMBL:CH466551 GO:GO:0003730 GO:GO:0043484
GO:GO:0006978 HOGENOM:HOG000276232 GO:GO:0070935 EMBL:AL928599
GO:GO:0010830 HOVERGEN:HBG108399 GeneTree:ENSGT00390000002308
OrthoDB:EOG4DV5NS eggNOG:NOG248750 CTD:55544 OMA:VGYGYPA
EMBL:X75316 EMBL:AK146026 EMBL:AK162141 EMBL:AK172625 EMBL:BC085307
IPI:IPI00122313 PIR:S38384 RefSeq:NP_062420.2 UniGene:Mm.485782
ProteinModelPortal:Q62176 SMR:Q62176 STRING:Q62176
PhosphoSite:Q62176 PaxDb:Q62176 PRIDE:Q62176
Ensembl:ENSMUST00000029014 Ensembl:ENSMUST00000173393 GeneID:56190
KEGG:mmu:56190 UCSC:uc008odh.1 InParanoid:Q5U418 ChiTaRS:RBM38
NextBio:311992 Bgee:Q62176 CleanEx:MM_RBM38 Genevestigator:Q62176
GermOnline:ENSMUSG00000027510 Uniprot:Q62176
Length = 237
Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 38/84 (45%), Positives = 55/84 (65%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQS 93
TK+FVGGL + T D+SL++ F FGDI EA VIT+R++GKSRG+GFVT +A A
Sbjct: 32 TKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRA-- 89
Query: 94 AMDGQEL-NGR--NIRVSFANDRP 114
D + +GR N+ +++ +P
Sbjct: 90 CKDPNPIIDGRKANVNLAYLGAKP 113
>RGD|1308503 [details] [associations]
symbol:Rbm38 "RNA binding motif protein 38" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0006977 "DNA
damage response, signal transduction by p53 class mediator
resulting in cell cycle arrest" evidence=IEA] [GO:0006978 "DNA
damage response, signal transduction by p53 class mediator
resulting in transcription of p21 class mediator" evidence=IEA]
[GO:0007050 "cell cycle arrest" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0010830
"regulation of myotube differentiation" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1308503 GO:GO:0008285 GO:GO:0006977 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007050 GO:GO:0003730 GO:GO:0043484
GO:GO:0006978 GO:GO:0070935 GO:GO:0010830 EMBL:CH474062
GeneTree:ENSGT00390000002308 OrthoDB:EOG4DV5NS OMA:VGYGYPA
IPI:IPI00190605 UniGene:Rn.17628 Ensembl:ENSRNOT00000008764
Uniprot:D3ZGE9
Length = 237
Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 38/84 (45%), Positives = 55/84 (65%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQS 93
TK+FVGGL + T D+SL++ F FGDI EA VIT+R++GKSRG+GFVT +A A
Sbjct: 32 TKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRA-- 89
Query: 94 AMDGQEL-NGR--NIRVSFANDRP 114
D + +GR N+ +++ +P
Sbjct: 90 CKDPNPIIDGRKANVNLAYLGAKP 113
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 179 (68.1 bits), Expect = 3.9e-13, P = 3.9e-13
Identities = 36/79 (45%), Positives = 51/79 (64%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95
+FVG LS D+ L+EAF FGD+++AKVI + + KS+G+GFV+Y E A A M
Sbjct: 137 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 196
Query: 96 DGQELNGRNIRVSFANDRP 114
+GQ L R IR ++A +P
Sbjct: 197 NGQWLGRRTIRTNWATRKP 215
Score = 114 (45.2 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 24/80 (30%), Positives = 49/80 (61%)
Query: 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESAS 89
S T ++VG ++ T+D +++ F++FG ITE ++ K +G+ FV +D+ ++A+
Sbjct: 237 SGDNTSVYVGNIASLTEDE-IRQGFASFGRITEVRIF------KMQGYAFVKFDNKDAAA 289
Query: 90 SAQSAMDGQELNGRNIRVSF 109
A M+ Q++ G+ +R S+
Sbjct: 290 KAIVQMNNQDVGGQLVRCSW 309
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 181 (68.8 bits), Expect = 4.1e-13, P = 4.1e-13
Identities = 33/83 (39%), Positives = 53/83 (63%)
Query: 32 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSA 91
+ LFVG LSW + L + F FG+++ A+++TER++G+SRGFG+V + + A+ A
Sbjct: 275 ASANLFVGNLSWNVTEEWLHQEFEQFGELS-ARIMTERDTGRSRGFGYVEFTNAADAAKA 333
Query: 92 QSAMDGQELNGRNIRVSFANDRP 114
AM E++GR I + +A RP
Sbjct: 334 YEAMKEHEIDGRKINLDYATGRP 356
Score = 154 (59.3 bits), Expect = 3.3e-10, P = 3.3e-10
Identities = 31/83 (37%), Positives = 51/83 (61%)
Query: 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASS 90
+S T LFVG L + ++ S+ E F G++ ++ T+ ESG+ +GFG+V Y S + A
Sbjct: 382 ESDT-LFVGNLPFSANEDSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYVQYSSVDEARK 440
Query: 91 AQSAMDGQELNGRNIRVSFANDR 113
A + + G E++GR IR+ F+ R
Sbjct: 441 AYNELQGAEIDGRPIRLDFSTPR 463
>ZFIN|ZDB-GENE-040628-1 [details] [associations]
symbol:rbm24a "RNA binding motif protein 24a"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISS] [GO:0043488
"regulation of mRNA stability" evidence=ISS] [GO:0010830
"regulation of myotube differentiation" evidence=ISS] [GO:0003228
"atrial cardiac muscle tissue development" evidence=IMP]
[GO:0072358 "cardiovascular system development" evidence=IGI]
[GO:0001947 "heart looping" evidence=IMP] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040628-1 GO:GO:0005634
GO:GO:0005737 GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 GO:GO:0001947 GO:GO:0043488 eggNOG:COG0724
HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399
EMBL:AB080735 IPI:IPI00506301 RefSeq:NP_998030.1 UniGene:Dr.159425
ProteinModelPortal:Q76LC6 SMR:Q76LC6 STRING:Q76LC6
Ensembl:ENSDART00000110862 GeneID:405801 KEGG:dre:405801 CTD:405801
GeneTree:ENSGT00390000002308 OrthoDB:EOG4KWJVF NextBio:20817766
ArrayExpress:Q76LC6 Bgee:Q76LC6 GO:GO:0003228 Uniprot:Q76LC6
Length = 230
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 37/83 (44%), Positives = 56/83 (67%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQS 93
TK+FVGGL + T DSSL++ F FG+I EA VIT+R++GKSRG+GFVT ++ SA+
Sbjct: 11 TKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTM-ADRSAADRAC 69
Query: 94 AMDGQELNGR--NIRVSFANDRP 114
++GR N+ +++ +P
Sbjct: 70 KDPNPIIDGRKANVNLAYLGAKP 92
>ZFIN|ZDB-GENE-060312-43 [details] [associations]
symbol:rbm24b "RNA binding motif protein 24b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0001947 "heart
looping" evidence=IMP] [GO:0072358 "cardiovascular system
development" evidence=IGI] [GO:0003228 "atrial cardiac muscle
tissue development" evidence=IMP] [GO:0003229 "ventricular cardiac
muscle tissue development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-060312-43 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0001947 GO:GO:0003229
GeneTree:ENSGT00390000002308 GO:GO:0003228 EMBL:CT027645
IPI:IPI00898048 ProteinModelPortal:E9QCG4
Ensembl:ENSDART00000127556 Bgee:E9QCG4 Uniprot:E9QCG4
Length = 245
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 37/83 (44%), Positives = 56/83 (67%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQS 93
TK+FVGGL + T DSSL++ F FG+I EA VIT+R++GKSRG+GFVT ++ SA+
Sbjct: 11 TKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTM-ADRSAAERAC 69
Query: 94 AMDGQELNGR--NIRVSFANDRP 114
++GR N+ +++ +P
Sbjct: 70 KDPNPIIDGRKANVNLAYLGAKP 92
>TAIR|locus:2037370 [details] [associations]
symbol:AT1G20880 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00530203 RefSeq:NP_001185049.1 RefSeq:NP_564127.1
UniGene:At.26164 ProteinModelPortal:F4HUQ5 SMR:F4HUQ5 PRIDE:F4HUQ5
EnsemblPlants:AT1G20880.1 EnsemblPlants:AT1G20880.2 GeneID:838681
KEGG:ath:AT1G20880 OMA:MAYHSIP Uniprot:F4HUQ5
Length = 274
Score = 172 (65.6 bits), Expect = 5.3e-13, P = 5.3e-13
Identities = 37/86 (43%), Positives = 53/86 (61%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSA-- 91
TK+FVGGL+W T +L+ F +GDI EA VIT++ +G+S+G+GFVT+ E+A A
Sbjct: 24 TKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACV 83
Query: 92 --QSAMDGQELNGRNIRVSFANDRPP 115
+DG+ N N+ S RPP
Sbjct: 84 DPTPIIDGRRANC-NL-ASLGRSRPP 107
>MGI|MGI:3610364 [details] [associations]
symbol:Rbm24 "RNA binding motif protein 24" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IDA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IMP] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:3610364 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730
GO:GO:0043488 HOGENOM:HOG000276232 GO:GO:0010830 CTD:221662
GeneTree:ENSGT00390000002308 OMA:LQADRMQ OrthoDB:EOG4DV5NS
EMBL:AC124411 IPI:IPI00380986 RefSeq:NP_001074894.1
UniGene:Mm.38269 ProteinModelPortal:D3Z4I3 SMR:D3Z4I3
Ensembl:ENSMUST00000037923 GeneID:666794 KEGG:mmu:666794
UCSC:uc007qhe.1 NextBio:430851 Bgee:D3Z4I3 Uniprot:D3Z4I3
Length = 236
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 37/84 (44%), Positives = 58/84 (69%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQS 93
TK+FVGGL + T D+SL++ F FGDI EA VIT+R++GKSRG+GFVT + A++ ++
Sbjct: 11 TKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMA--DRAAAERA 68
Query: 94 AMDGQEL-NGR--NIRVSFANDRP 114
D + +GR N+ +++ +P
Sbjct: 69 CKDPNPIIDGRKANVNLAYLGAKP 92
>RGD|1584029 [details] [associations]
symbol:Rbm24 "RNA binding motif protein 24" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA;ISO] [GO:0010830
"regulation of myotube differentiation" evidence=IEA;ISO]
[GO:0043488 "regulation of mRNA stability" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1584029 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 GO:GO:0043488 GO:GO:0010830 CTD:221662
OrthoDB:EOG4DV5NS IPI:IPI00214952 RefSeq:NP_001178029.1
UniGene:Rn.199020 ProteinModelPortal:D3ZLP6
Ensembl:ENSRNOT00000022768 GeneID:690139 KEGG:rno:690139
NextBio:740266 Uniprot:D3ZLP6
Length = 236
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 37/84 (44%), Positives = 58/84 (69%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQS 93
TK+FVGGL + T D+SL++ F FGDI EA VIT+R++GKSRG+GFVT + A++ ++
Sbjct: 11 TKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMA--DRAAAERA 68
Query: 94 AMDGQEL-NGR--NIRVSFANDRP 114
D + +GR N+ +++ +P
Sbjct: 69 CKDPNPIIDGRKANVNLAYLGAKP 92
>UNIPROTKB|F1SMV6 [details] [associations]
symbol:LOC100737174 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:CU856676
Ensembl:ENSSSCT00000017723 Uniprot:F1SMV6
Length = 365
Score = 176 (67.0 bits), Expect = 6.2e-13, P = 6.2e-13
Identities = 42/106 (39%), Positives = 64/106 (60%)
Query: 8 GMLVRQNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVIT 67
G +R Q P+ S NA SQ LFV GLS T + +LKE+F G I A+++T
Sbjct: 204 GRAIRLELQGPRGSP-NA---RSQPSKTLFVKGLSEETTEETLKESFD--GSI-RARIVT 256
Query: 68 ERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 113
+RE+G S+GFGFV ++S E A +A+ AM+ E++G + + +A +
Sbjct: 257 DRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 302
Score = 100 (40.3 bits), Expect = 0.00013, P = 0.00013
Identities = 25/83 (30%), Positives = 46/83 (55%)
Query: 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASS 90
+S+T L + L++ + +L+E F T KV + ++GKS+G+ F+ + S E A
Sbjct: 138 ESKT-LVLSNLAYSATEETLQEVFEK---ATFIKV-PQNQNGKSKGYAFIEFASFEDAKE 192
Query: 91 AQSAMDGQELNGRNIRVSFANDR 113
A ++ + +E+ GR IR+ R
Sbjct: 193 ALNSCNKREIEGRAIRLELQGPR 215
>TAIR|locus:2006998 [details] [associations]
symbol:AT1G33470 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005576 "extracellular region" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AK176398 IPI:IPI00533784
RefSeq:NP_174613.2 UniGene:At.17522 UniGene:At.67846
ProteinModelPortal:Q67YS0 SMR:Q67YS0 PaxDb:Q67YS0 PRIDE:Q67YS0
EnsemblPlants:AT1G33470.1 GeneID:840240 KEGG:ath:AT1G33470
TAIR:At1g33470 InParanoid:Q67YS0 OMA:GAQYPFY PhylomeDB:Q67YS0
ProtClustDB:CLSN2680737 ArrayExpress:Q67YS0 Genevestigator:Q67YS0
Uniprot:Q67YS0
Length = 245
Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 35/72 (48%), Positives = 47/72 (65%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSA-- 91
TK+FVGGL+W T SL+ F FGDI EA VIT++ SG+S+G+GFVT+ E+A A
Sbjct: 7 TKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACV 66
Query: 92 --QSAMDGQELN 101
+DG+ N
Sbjct: 67 DPAPVIDGRRAN 78
>UNIPROTKB|E9PTI5 [details] [associations]
symbol:E9PTI5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 IPI:IPI01007589
Ensembl:ENSRNOT00000011480 Uniprot:E9PTI5
Length = 567
Score = 179 (68.1 bits), Expect = 7.7e-13, P = 7.7e-13
Identities = 43/113 (38%), Positives = 67/113 (59%)
Query: 4 CGKL---GMLVRQNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDI 60
C K+ G +R Q P+ S NA SQ LFV GLS T + +LKE+F G +
Sbjct: 400 CNKMEIEGRTIRLELQGPRGSP-NA---RSQPSKTLFVKGLSEDTTEETLKESFE--GSV 453
Query: 61 TEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 113
A+++T+RE+G S+GFGFV ++S E A +A+ AM+ E++G + + +A +
Sbjct: 454 -RARIVTDRETGSSKGFGFVDFNSEEDAKTAKEAMEDGEIDGNKVTLDWAKPK 505
Score = 102 (41.0 bits), Expect = 0.00015, P = 0.00015
Identities = 29/101 (28%), Positives = 51/101 (50%)
Query: 13 QNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESG 72
+ GQ + + N+ + +S+T L + LS+ + +L+E F T KV + G
Sbjct: 324 EKGQRQERTGKNST-WSGESKT-LVLSNLSYSATEETLQEVFEK---ATFIKV-PQNPHG 377
Query: 73 KSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 113
KS+G+ F+ + S E A A ++ + E+ GR IR+ R
Sbjct: 378 KSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPR 418
>UNIPROTKB|Q96B58 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
Length = 214
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 37/103 (35%), Positives = 60/103 (58%)
Query: 13 QNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESG 72
Q +++++ R SQ +FVG LS +K AF+ FG I++A+V+ + +G
Sbjct: 87 QKKDTSSSTVVSTQR--SQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATG 144
Query: 73 KSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRPP 115
KS+G+GFV++ + A +A M GQ L GR IR ++A +PP
Sbjct: 145 KSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 187
Score = 93 (37.8 bits), Expect = 0.00027, P = 0.00027
Identities = 21/75 (28%), Positives = 44/75 (58%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95
L+VG LS ++ + + FS G K+I + +G + FV + + A++A +AM
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDT-AGNDP-YCFVEFHEHRHAAAALAAM 66
Query: 96 DGQELNGRNIRVSFA 110
+G+++ G+ ++V++A
Sbjct: 67 NGRKIMGKEVKVNWA 81
>UNIPROTKB|G4MR34 [details] [associations]
symbol:MGG_09885 "Cleavage stimulation factor 64-kDa
subunit" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001231 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304 RefSeq:XP_003709978.1
ProteinModelPortal:G4MR34 SMR:G4MR34 EnsemblFungi:MGG_09885T0
GeneID:2680929 KEGG:mgr:MGG_09885 Uniprot:G4MR34
Length = 305
Score = 172 (65.6 bits), Expect = 9.3e-13, P = 9.3e-13
Identities = 29/79 (36%), Positives = 51/79 (64%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95
+FVG + +G + + + FS G + +++ +RE+GK +GFGF Y N+SA+SA +
Sbjct: 10 VFVGNIPYGLSEEQITDIFSRAGKVLNFRLVYDRETGKPKGFGFAEYPDNDSAASAVRNL 69
Query: 96 DGQELNGRNIRVSFANDRP 114
+ E+ GR +RV F+N++P
Sbjct: 70 NDTEIMGRKLRVDFSNEKP 88
>RGD|3153 [details] [associations]
symbol:Ncl "nucleolin" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005938 "cell cortex" evidence=ISO] [GO:0008022
"protein C-terminus binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:3153 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
OrthoDB:EOG45MN5J EMBL:M55022 EMBL:M55015 EMBL:M55017 EMBL:M55020
EMBL:M22090 IPI:IPI00882501 PIR:JH0148 UniGene:Rn.144561
UniGene:Rn.7735 ProteinModelPortal:P13383 SMR:P13383 IntAct:P13383
STRING:P13383 PhosphoSite:P13383 PRIDE:P13383 UCSC:RGD:3153
InParanoid:P13383 ArrayExpress:P13383 Genevestigator:P13383
GermOnline:ENSRNOG00000018273 Uniprot:P13383
Length = 713
Score = 179 (68.1 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 43/113 (38%), Positives = 67/113 (59%)
Query: 4 CGKL---GMLVRQNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDI 60
C K+ G +R Q P+ S NA SQ LFV GLS T + +LKE+F G +
Sbjct: 546 CNKMEIEGRTIRLELQGPRGSP-NA---RSQPSKTLFVKGLSEDTTEETLKESFE--GSV 599
Query: 61 TEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 113
A+++T+RE+G S+GFGFV ++S E A +A+ AM+ E++G + + +A +
Sbjct: 600 -RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 651
Score = 102 (41.0 bits), Expect = 0.00020, P = 0.00020
Identities = 29/101 (28%), Positives = 51/101 (50%)
Query: 13 QNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESG 72
+ GQ + + N+ + +S+T L + LS+ + +L+E F T KV + G
Sbjct: 470 EKGQRQERTGKNST-WSGESKT-LVLSNLSYSATEETLQEVFEK---ATFIKV-PQNPHG 523
Query: 73 KSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 113
KS+G+ F+ + S E A A ++ + E+ GR IR+ R
Sbjct: 524 KSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPR 564
>UNIPROTKB|P08199 [details] [associations]
symbol:NCL "Nucleolin" species:10036 "Mesocricetus auratus"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 EMBL:M15825
PIR:A27441 PDB:1FJ7 PDB:1FJC PDB:1FJE PDB:1RKJ PDBsum:1FJ7
PDBsum:1FJC PDBsum:1FJE PDBsum:1RKJ ProteinModelPortal:P08199
SMR:P08199 PRIDE:P08199 EvolutionaryTrace:P08199 Uniprot:P08199
Length = 714
Score = 179 (68.1 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 43/113 (38%), Positives = 67/113 (59%)
Query: 4 CGKL---GMLVRQNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDI 60
C K+ G +R Q P+ S NA SQ LFV GLS T + +LKE+F G +
Sbjct: 543 CNKMEIEGRTIRLELQGPRGSP-NA---RSQPSKTLFVKGLSEDTTEETLKESFE--GSV 596
Query: 61 TEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 113
A+++T+RE+G S+GFGFV ++S E A +A+ AM+ E++G + + +A +
Sbjct: 597 -RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 648
Score = 106 (42.4 bits), Expect = 7.4e-05, P = 7.4e-05
Identities = 29/101 (28%), Positives = 52/101 (51%)
Query: 13 QNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESG 72
+ GQ + + N+ + +S+T L + LS+ + +L+E F T KV + + G
Sbjct: 467 EKGQRQERTGKNST-WSGESKT-LVLSNLSYSATEETLQEVFEK---ATFIKV-PQNQQG 520
Query: 73 KSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 113
KS+G+ F+ + S E A A ++ + E+ GR IR+ R
Sbjct: 521 KSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPR 561
>UNIPROTKB|Q5U328 [details] [associations]
symbol:Ncl "Nucleolin, isoform CRA_c" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:3153 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 HOGENOM:HOG000113885
UniGene:Rn.144561 UniGene:Rn.7735 EMBL:CH474004 OMA:ENAMEIR
EMBL:BC085751 IPI:IPI00231827 RefSeq:NP_036881.2 SMR:Q5U328
STRING:Q5U328 Ensembl:ENSRNOT00000024712 GeneID:25135
KEGG:rno:25135 InParanoid:Q5U328 NextBio:605553
Genevestigator:Q5U328 Uniprot:Q5U328
Length = 714
Score = 179 (68.1 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 43/113 (38%), Positives = 67/113 (59%)
Query: 4 CGKL---GMLVRQNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDI 60
C K+ G +R Q P+ S NA SQ LFV GLS T + +LKE+F G +
Sbjct: 547 CNKMEIEGRTIRLELQGPRGSP-NA---RSQPSKTLFVKGLSEDTTEETLKESFE--GSV 600
Query: 61 TEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 113
A+++T+RE+G S+GFGFV ++S E A +A+ AM+ E++G + + +A +
Sbjct: 601 -RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 652
Score = 102 (41.0 bits), Expect = 0.00020, P = 0.00020
Identities = 29/101 (28%), Positives = 51/101 (50%)
Query: 13 QNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESG 72
+ GQ + + N+ + +S+T L + LS+ + +L+E F T KV + G
Sbjct: 471 EKGQRQERTGKNST-WSGESKT-LVLSNLSYSATEETLQEVFEK---ATFIKV-PQNPHG 524
Query: 73 KSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 113
KS+G+ F+ + S E A A ++ + E+ GR IR+ R
Sbjct: 525 KSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPR 565
>TAIR|locus:2077392 [details] [associations]
symbol:AT3G07810 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005576 "extracellular region" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 IPI:IPI00546643 RefSeq:NP_850539.1 UniGene:At.19375
ProteinModelPortal:F4JFN7 SMR:F4JFN7 PRIDE:F4JFN7
EnsemblPlants:AT3G07810.2 GeneID:819972 KEGG:ath:AT3G07810
OMA:YYIGNTN Uniprot:F4JFN7
Length = 495
Score = 158 (60.7 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 26/54 (48%), Positives = 40/54 (74%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTY 82
M KLF+GG+SW T++ LKE FS+FG++ EA ++ +R +G++RGFGFV +
Sbjct: 1 MQSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVF 54
Score = 134 (52.2 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 29/76 (38%), Positives = 40/76 (52%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
K+FVGGL +S K F FG T+ V+ + + + RGFGF+TYDS E+
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVL-L 167
Query: 95 MDGQELNGRNIRVSFA 110
ELNG+ + V A
Sbjct: 168 KTFHELNGKMVEVKRA 183
Score = 40 (19.1 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 78 GFVTYDSNESASSAQSAMDGQELNGRNIRVSFAN 111
G + Y++N + S++ + M G + F N
Sbjct: 323 GGLNYNNNNTNSNSNTYMGGSSSGNNTLSGPFGN 356
>UNIPROTKB|A6QPJ1 [details] [associations]
symbol:RBM24 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0010830 "regulation of myotube differentiation" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
HOGENOM:HOG000276232 GO:GO:0010830 HOVERGEN:HBG108399 CTD:221662
GeneTree:ENSGT00390000002308 OMA:LQADRMQ eggNOG:NOG248750
EMBL:DAAA02055633 EMBL:BC149345 IPI:IPI00711385
RefSeq:NP_001098455.1 UniGene:Bt.111570 SMR:A6QPJ1
Ensembl:ENSBTAT00000038477 GeneID:524220 KEGG:bta:524220
NextBio:20873922 Uniprot:A6QPJ1
Length = 236
Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 36/84 (42%), Positives = 58/84 (69%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQS 93
TK+FVGGL + T D+SL++ F FG+I EA VIT+R++GKSRG+GFVT + A++ ++
Sbjct: 11 TKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMA--DRAAAERA 68
Query: 94 AMDGQEL-NGR--NIRVSFANDRP 114
D + +GR N+ +++ +P
Sbjct: 69 CKDPNPIIDGRKANVNLAYLGAKP 92
>UNIPROTKB|Q9BX46 [details] [associations]
symbol:RBM24 "RNA-binding protein 24" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043488
"regulation of mRNA stability" evidence=ISS] [GO:0010830
"regulation of myotube differentiation" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 eggNOG:COG0724
HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399
CTD:221662 EMBL:AK055391 EMBL:AK095016 EMBL:AY547318 EMBL:AL136305
EMBL:BC104810 EMBL:BC104808 IPI:IPI00411370 IPI:IPI00827745
RefSeq:NP_001137413.1 RefSeq:NP_001137414.1 RefSeq:NP_694565.1
UniGene:Hs.741190 ProteinModelPortal:Q9BX46 SMR:Q9BX46
IntAct:Q9BX46 MINT:MINT-2879164 STRING:Q9BX46 PhosphoSite:Q9BX46
DMDM:74761312 PRIDE:Q9BX46 Ensembl:ENST00000318204
Ensembl:ENST00000379052 GeneID:221662 KEGG:hsa:221662
UCSC:uc003nbz.4 UCSC:uc003nca.3 GeneCards:GC06P017281
HGNC:HGNC:21539 neXtProt:NX_Q9BX46 PharmGKB:PA134964569
InParanoid:Q9BX46 OMA:LQADRMQ OrthoDB:EOG4DV5NS PhylomeDB:Q9BX46
GenomeRNAi:221662 NextBio:91409 ArrayExpress:Q9BX46 Bgee:Q9BX46
CleanEx:HS_RBM24 Genevestigator:Q9BX46 Uniprot:Q9BX46
Length = 236
Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 36/84 (42%), Positives = 58/84 (69%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQS 93
TK+FVGGL + T D+SL++ F FG+I EA VIT+R++GKSRG+GFVT + A++ ++
Sbjct: 11 TKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMA--DRAAAERA 68
Query: 94 AMDGQEL-NGR--NIRVSFANDRP 114
D + +GR N+ +++ +P
Sbjct: 69 CKDPNPIIDGRKANVNLAYLGAKP 92
>UNIPROTKB|F1RUJ2 [details] [associations]
symbol:RBM24 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0010830 "regulation of myotube differentiation" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
GO:GO:0010830 GeneTree:ENSGT00390000002308 OMA:LQADRMQ
EMBL:CU466948 Ensembl:ENSSSCT00000001161 Uniprot:F1RUJ2
Length = 254
Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 36/84 (42%), Positives = 58/84 (69%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQS 93
TK+FVGGL + T D+SL++ F FG+I EA VIT+R++GKSRG+GFVT + A++ ++
Sbjct: 29 TKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMA--DRAAAERA 86
Query: 94 AMDGQEL-NGR--NIRVSFANDRP 114
D + +GR N+ +++ +P
Sbjct: 87 CKDPNPIIDGRKANVNLAYLGAKP 110
>WB|WBGene00006321 [details] [associations]
symbol:sup-12 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0040012 "regulation of locomotion" evidence=IGI] [GO:0032956
"regulation of actin cytoskeleton organization" evidence=IGI]
[GO:0016607 "nuclear speck" evidence=IDA] [GO:0036002 "pre-mRNA
binding" evidence=IPI] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0097157 "pre-mRNA
intronic binding" evidence=IPI] [GO:0030529 "ribonucleoprotein
complex" evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0040012 GO:GO:0030529 GO:GO:0032956 GO:GO:0097157
GO:GO:0000380 HSSP:P09651 HOGENOM:HOG000276232
GeneTree:ENSGT00390000002308 EMBL:FO081409 GeneID:180674
KEGG:cel:CELE_T22B2.4 CTD:180674 PIR:T33034 RefSeq:NP_508674.1
ProteinModelPortal:O45189 SMR:O45189 DIP:DIP-24970N IntAct:O45189
MINT:MINT-1047167 STRING:O45189 EnsemblMetazoa:T22B2.4a
UCSC:T22B2.4 WormBase:T22B2.4a InParanoid:O45189 OMA:DRNTQKS
NextBio:910400 ArrayExpress:O45189 Uniprot:O45189
Length = 248
Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 37/84 (44%), Positives = 54/84 (64%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQS 93
TK+FVGGL + T D +L E F FGDI EA VIT+R + KSRG+GFVT + AS+ ++
Sbjct: 35 TKIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTM--KDRASAERA 92
Query: 94 AMDGQEL-NGR--NIRVSFANDRP 114
D + +GR N+ +++ +P
Sbjct: 93 CKDPNPIIDGRKANVNLAYLGAKP 116
>UNIPROTKB|O45189 [details] [associations]
symbol:sup-12 "Protein SUP-12, isoform a" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0040012 GO:GO:0030529 GO:GO:0032956
GO:GO:0097157 GO:GO:0000380 HSSP:P09651 HOGENOM:HOG000276232
GeneTree:ENSGT00390000002308 EMBL:FO081409 GeneID:180674
KEGG:cel:CELE_T22B2.4 CTD:180674 PIR:T33034 RefSeq:NP_508674.1
ProteinModelPortal:O45189 SMR:O45189 DIP:DIP-24970N IntAct:O45189
MINT:MINT-1047167 STRING:O45189 EnsemblMetazoa:T22B2.4a
UCSC:T22B2.4 WormBase:T22B2.4a InParanoid:O45189 OMA:DRNTQKS
NextBio:910400 ArrayExpress:O45189 Uniprot:O45189
Length = 248
Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 37/84 (44%), Positives = 54/84 (64%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQS 93
TK+FVGGL + T D +L E F FGDI EA VIT+R + KSRG+GFVT + AS+ ++
Sbjct: 35 TKIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTM--KDRASAERA 92
Query: 94 AMDGQEL-NGR--NIRVSFANDRP 114
D + +GR N+ +++ +P
Sbjct: 93 CKDPNPIIDGRKANVNLAYLGAKP 116
>UNIPROTKB|G3MYJ0 [details] [associations]
symbol:G3MYJ0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000064073 Uniprot:G3MYJ0
Length = 625
Score = 177 (67.4 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 42/106 (39%), Positives = 64/106 (60%)
Query: 8 GMLVRQNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVIT 67
G +R Q P+ S NA SQ LFV GLS T + +LKE+F G I A+++T
Sbjct: 465 GRAIRLELQGPRGSP-NA---RSQPSKTLFVKGLSEDTTEETLKESFD--GSI-RARIVT 517
Query: 68 ERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 113
+RE+G S+GFGFV ++S E A +A+ AM+ E++G + + +A +
Sbjct: 518 DRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 563
Score = 106 (42.4 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 26/83 (31%), Positives = 46/83 (55%)
Query: 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASS 90
+S+T L + LS+ + +L+E F T KV + ++GKS+G+ F+ + S E A
Sbjct: 399 ESKT-LVLSNLSYSATEETLQEVFEK---ATHIKV-PQNQNGKSKGYAFIEFASFEDAKE 453
Query: 91 AQSAMDGQELNGRNIRVSFANDR 113
A ++ + +E+ GR IR+ R
Sbjct: 454 ALNSCNKREIEGRAIRLELQGPR 476
>UNIPROTKB|G3MXT4 [details] [associations]
symbol:G3MXT4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000065413 Uniprot:G3MXT4
Length = 630
Score = 177 (67.4 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 42/106 (39%), Positives = 64/106 (60%)
Query: 8 GMLVRQNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVIT 67
G +R Q P+ S NA SQ LFV GLS T + +LKE+F G I A+++T
Sbjct: 470 GRAIRLELQGPRGSP-NA---RSQPSKTLFVKGLSEDTTEETLKESFD--GSI-RARIVT 522
Query: 68 ERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 113
+RE+G S+GFGFV ++S E A +A+ AM+ E++G + + +A +
Sbjct: 523 DRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 568
Score = 106 (42.4 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 26/83 (31%), Positives = 46/83 (55%)
Query: 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASS 90
+S+T L + LS+ + +L+E F T KV + ++GKS+G+ F+ + S E A
Sbjct: 404 ESKT-LVLSNLSYSATEETLQEVFEK---ATHIKV-PQNQNGKSKGYAFIEFASFEDAKE 458
Query: 91 AQSAMDGQELNGRNIRVSFANDR 113
A ++ + +E+ GR IR+ R
Sbjct: 459 ALNSCNKREIEGRAIRLELQGPR 481
>UNIPROTKB|G3X7M4 [details] [associations]
symbol:G3X7M4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000038502 OMA:ENAMEIR Uniprot:G3X7M4
Length = 630
Score = 177 (67.4 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 42/106 (39%), Positives = 64/106 (60%)
Query: 8 GMLVRQNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVIT 67
G +R Q P+ S NA SQ LFV GLS T + +LKE+F G I A+++T
Sbjct: 470 GRAIRLELQGPRGSP-NA---RSQPSKTLFVKGLSEDTTEETLKESFD--GSI-RARIVT 522
Query: 68 ERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 113
+RE+G S+GFGFV ++S E A +A+ AM+ E++G + + +A +
Sbjct: 523 DRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 568
Score = 106 (42.4 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 26/83 (31%), Positives = 46/83 (55%)
Query: 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASS 90
+S+T L + LS+ + +L+E F T KV + ++GKS+G+ F+ + S E A
Sbjct: 404 ESKT-LVLSNLSYSATEETLQEVFEK---ATHIKV-PQNQNGKSKGYAFIEFASFEDAKE 458
Query: 91 AQSAMDGQELNGRNIRVSFANDR 113
A ++ + +E+ GR IR+ R
Sbjct: 459 ALNSCNKREIEGRAIRLELQGPR 481
>UNIPROTKB|Q29RT0 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9913 "Bos taurus" [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0001047 "core promoter binding" evidence=ISS]
[GO:0070062 "extracellular vesicular exosome" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0048025 "negative regulation
of mRNA splicing, via spliceosome" evidence=ISS] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISS] [GO:0005719 "nuclear
euchromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0071347 "cellular
response to interleukin-1" evidence=ISS] [GO:0006509 "membrane
protein ectodomain proteolysis" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
EMBL:BC114040 IPI:IPI00721392 RefSeq:NP_001040075.1
RefSeq:XP_001250252.1 UniGene:Bt.59490 ProteinModelPortal:Q29RT0
SMR:Q29RT0 Ensembl:ENSBTAT00000066112 GeneID:617969 GeneID:782306
KEGG:bta:617969 KEGG:bta:782306 CTD:27288
GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InParanoid:Q29RT0 OMA:GDFDLRP OrthoDB:EOG4WSWBK
NextBio:20900925 InterPro:IPR012604 Pfam:PF08081 Uniprot:Q29RT0
Length = 396
Score = 173 (66.0 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 33/76 (43%), Positives = 53/76 (69%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
KLF+GGL+ TD+ SL+ F +G I+E ++ +RE+ KSRGF F+T++S A +A
Sbjct: 9 KLFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPADAKAAVRD 68
Query: 95 MDGQELNGRNIRVSFA 110
M+G+ L+G+ I+V+ A
Sbjct: 69 MNGKSLDGKAIKVAQA 84
>TAIR|locus:2036520 [details] [associations]
symbol:AtRZ-1b "AtRZ-1b" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA;IDA] [GO:0003723
"RNA binding" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009409
"response to cold" evidence=IGI;IEP] [GO:0009414 "response to water
deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
evidence=IEP] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166 GO:GO:0046872
GO:GO:0009409 GO:GO:0009414 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC002292 Gene3D:4.10.60.10 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 KO:K12885 EMBL:AY088195
EMBL:BT002328 EMBL:AK221863 IPI:IPI00521762 PIR:G96631
RefSeq:NP_564759.1 RefSeq:NP_849832.1 UniGene:At.19208
UniGene:At.26558 ProteinModelPortal:O22703 SMR:O22703 IntAct:O22703
PaxDb:O22703 PRIDE:O22703 EnsemblPlants:AT1G60650.1
EnsemblPlants:AT1G60650.2 GeneID:842359 KEGG:ath:AT1G60650
TAIR:At1g60650 InParanoid:O22703 OMA:HHLENEY PhylomeDB:O22703
ProtClustDB:CLSN2718554 Genevestigator:O22703 Uniprot:O22703
Length = 292
Score = 169 (64.5 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 30/81 (37%), Positives = 49/81 (60%)
Query: 33 QTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQ 92
++++FVGGLSW + L+ F +G ITE +++ R++G+ RGFGF+T+ A A
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70
Query: 93 SAMDGQELNGRNIRVSFANDR 113
M G+EL + I V+ A +
Sbjct: 71 KHMHGRELGNKVISVNKAEPK 91
>SGD|S000004961 [details] [associations]
symbol:PUB1 "Poly (A)+ RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003729 "mRNA binding" evidence=IMP;IDA] [GO:0043488
"regulation of mRNA stability" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0034063
"stress granule assembly" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000004961 GO:GO:0005634 GO:GO:0008266 GO:GO:0000184
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:BK006947
GO:GO:0043488 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
EMBL:L13725 EMBL:L20767 EMBL:L01797 EMBL:Z71292 PIR:S62928
RefSeq:NP_014382.1 PDB:2LA4 PDB:3MD1 PDB:3MD3 PDBsum:2LA4
PDBsum:3MD1 PDBsum:3MD3 ProteinModelPortal:P32588 SMR:P32588
DIP:DIP-5480N IntAct:P32588 MINT:MINT-499485 STRING:P32588
PaxDb:P32588 PeptideAtlas:P32588 EnsemblFungi:YNL016W GeneID:855716
KEGG:sce:YNL016W GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 OMA:PAYNTTV OrthoDB:EOG4SN4XJ EvolutionaryTrace:P32588
NextBio:980072 Genevestigator:P32588 GermOnline:YNL016W
Uniprot:P32588
Length = 453
Score = 174 (66.3 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 33/84 (39%), Positives = 52/84 (61%)
Query: 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESAS 89
S LFVG L+ DD +L+ AF +F V+ + ++G SRG+GFV++ S + A
Sbjct: 158 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQ 217
Query: 90 SAQSAMDGQELNGRNIRVSFANDR 113
+A +M GQ+LNGR +R+++A R
Sbjct: 218 NAMDSMQGQDLNGRPLRINWAAKR 241
>UNIPROTKB|E1B8K6 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 EMBL:DAAA02006195
IPI:IPI00971535 RefSeq:NP_001193589.1 UniGene:Bt.107977
UniGene:Bt.108558 UniGene:Bt.7403 UniGene:Bt.79166
ProteinModelPortal:E1B8K6 IntAct:E1B8K6 PRIDE:E1B8K6
Ensembl:ENSBTAT00000021529 GeneID:497013 KEGG:bta:497013
OMA:RLEYSQS NextBio:20865826 Uniprot:E1B8K6
Length = 720
Score = 177 (67.4 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 42/106 (39%), Positives = 64/106 (60%)
Query: 8 GMLVRQNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVIT 67
G +R Q P+ S NA SQ LFV GLS T + +LKE+F G I A+++T
Sbjct: 560 GRAIRLELQGPRGSP-NA---RSQPSKTLFVKGLSEDTTEETLKESFD--GSI-RARIVT 612
Query: 68 ERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 113
+RE+G S+GFGFV ++S E A +A+ AM+ E++G + + +A +
Sbjct: 613 DRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 658
Score = 106 (42.4 bits), Expect = 7.5e-05, P = 7.5e-05
Identities = 26/83 (31%), Positives = 46/83 (55%)
Query: 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASS 90
+S+T L + LS+ + +L+E F T KV + ++GKS+G+ F+ + S E A
Sbjct: 494 ESKT-LVLSNLSYSATEETLQEVFEK---ATHIKV-PQNQNGKSKGYAFIEFASFEDAKE 548
Query: 91 AQSAMDGQELNGRNIRVSFANDR 113
A ++ + +E+ GR IR+ R
Sbjct: 549 ALNSCNKREIEGRAIRLELQGPR 571
>TAIR|locus:2077137 [details] [associations]
symbol:AT3G46020 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162459 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 EMBL:BT012586 EMBL:BT015095
IPI:IPI00521590 RefSeq:NP_190188.1 UniGene:At.35968
ProteinModelPortal:Q9LZT1 SMR:Q9LZT1 EnsemblPlants:AT3G46020.1
GeneID:823745 KEGG:ath:AT3G46020 TAIR:At3g46020 InParanoid:Q9LZT1
OMA:QIKEARL PhylomeDB:Q9LZT1 ProtClustDB:CLSN2915511
Genevestigator:Q9LZT1 Uniprot:Q9LZT1
Length = 102
Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 34/78 (43%), Positives = 52/78 (66%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
+LFV LS T D SL++ FS FG I EA++I + E+ + +GFGF+T+DS + A A +
Sbjct: 8 QLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKS 67
Query: 95 MDGQELNGRNIRVSFAND 112
+DG+ ++GR I V A +
Sbjct: 68 LDGKIVDGRLIFVEVAKN 85
>POMBASE|SPAC140.02 [details] [associations]
symbol:gar2 "nucleolar protein required for rRNA
processing" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0007000 "nucleolus organization" evidence=IMP] [GO:0042254
"ribosome biogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC140.02 EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 GO:GO:0007000
GO:GO:0005732 EMBL:Z48166 PIR:S55785 RefSeq:NP_593531.1
ProteinModelPortal:P41891 STRING:P41891 PRIDE:P41891
EnsemblFungi:SPAC140.02.1 GeneID:2542869 KEGG:spo:SPAC140.02
KO:K11294 OMA:VITDRES OrthoDB:EOG422DTZ NextBio:20803909
Uniprot:P41891
Length = 500
Score = 174 (66.3 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 32/85 (37%), Positives = 54/85 (63%)
Query: 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESAS 89
S +FVG LSW DD L + F +G I A+VI + +SG+S+G+G+V +++ E+A
Sbjct: 259 SNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAK 318
Query: 90 SAQSAMDGQELNGRNIRVSFANDRP 114
+A +A +E++GR + + +N RP
Sbjct: 319 AAVAANGTKEIDGRMVNLDLSNPRP 343
Score = 139 (54.0 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 29/85 (34%), Positives = 47/85 (55%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
+S+ +FVG LS+ + L AF GDI ++ T+ +SG+ +GFG+VT+ +SA
Sbjct: 361 LSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSA 420
Query: 89 SSAQSAMDGQELNGRNIRVSFANDR 113
M+G + GR R+ F+ R
Sbjct: 421 KKCVE-MNGHFIAGRPCRLDFSTPR 444
>UNIPROTKB|P19338 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IPI] [GO:0001525 "angiogenesis" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0042162 "telomeric DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938
Pathway_Interaction_DB:telomerasepathway GO:GO:0005654
GO:GO:0005730 Pathway_Interaction_DB:aurora_b_pathway GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0003723 GO:GO:0030529
GO:GO:0042162 EMBL:AC017104 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K11294 CTD:4691 HOGENOM:HOG000113885 EMBL:M60858 EMBL:AK091742
IPI:IPI00604620 PIR:A35804 PIR:S53728 RefSeq:NP_005372.2
UniGene:Hs.79110 PDB:2FC8 PDB:2FC9 PDB:2KRR PDBsum:2FC8 PDBsum:2FC9
PDBsum:2KRR ProteinModelPortal:P19338 SMR:P19338 DIP:DIP-89N
IntAct:P19338 MINT:MINT-4999081 STRING:P19338 PhosphoSite:P19338
DMDM:90110781 DOSAC-COBS-2DPAGE:P19338 SWISS-2DPAGE:P19338
PaxDb:P19338 PRIDE:P19338 DNASU:4691 Ensembl:ENST00000322723
GeneID:4691 KEGG:hsa:4691 UCSC:uc002vru.3 GeneCards:GC02M232318
HGNC:HGNC:7667 HPA:CAB004210 HPA:HPA023981 MIM:164035
neXtProt:NX_P19338 PharmGKB:PA31469 InParanoid:P19338 OMA:KERDTRT
OrthoDB:EOG45MN5J PhylomeDB:P19338 ChiTaRS:NCL
EvolutionaryTrace:P19338 GenomeRNAi:4691 NextBio:18090
PMAP-CutDB:P19338 ArrayExpress:P19338 Bgee:P19338 CleanEx:HS_NCL
Genevestigator:P19338 GermOnline:ENSG00000115053 Uniprot:P19338
Length = 710
Score = 176 (67.0 bits), Expect = 2.3e-12, P = 2.3e-12
Identities = 41/106 (38%), Positives = 64/106 (60%)
Query: 8 GMLVRQNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVIT 67
G +R Q P+ S NA SQ LFV GLS T + +LKE+F G + A+++T
Sbjct: 550 GRAIRLELQGPRGSP-NA---RSQPSKTLFVKGLSEDTTEETLKESFD--GSV-RARIVT 602
Query: 68 ERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 113
+RE+G S+GFGFV ++S E A +A+ AM+ E++G + + +A +
Sbjct: 603 DRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 648
Score = 103 (41.3 bits), Expect = 0.00015, P = 0.00015
Identities = 26/83 (31%), Positives = 46/83 (55%)
Query: 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASS 90
+S+T L + LS+ + +L+E F T KV + ++GKS+G+ F+ + S E A
Sbjct: 484 ESKT-LVLSNLSYSATEETLQEVFEK---ATFIKV-PQNQNGKSKGYAFIEFASFEDAKE 538
Query: 91 AQSAMDGQELNGRNIRVSFANDR 113
A ++ + +E+ GR IR+ R
Sbjct: 539 ALNSCNKREIEGRAIRLELQGPR 561
>UNIPROTKB|Q4R4J7 [details] [associations]
symbol:NCL "Nucleolin" species:9541 "Macaca fascicularis"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 OrthoDB:EOG45MN5J
EMBL:AB169897 EMBL:AB168220 ProteinModelPortal:Q4R4J7 SMR:Q4R4J7
PRIDE:Q4R4J7 Uniprot:Q4R4J7
Length = 711
Score = 176 (67.0 bits), Expect = 2.3e-12, P = 2.3e-12
Identities = 41/106 (38%), Positives = 64/106 (60%)
Query: 8 GMLVRQNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVIT 67
G +R Q P+ S NA SQ LFV GLS T + +LKE+F G + A+++T
Sbjct: 551 GRAIRLELQGPRGSP-NA---RSQPSKTLFVKGLSEDTTEETLKESFD--GSV-RARIVT 603
Query: 68 ERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 113
+RE+G S+GFGFV ++S E A +A+ AM+ E++G + + +A +
Sbjct: 604 DRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 649
Score = 103 (41.3 bits), Expect = 0.00015, P = 0.00015
Identities = 26/83 (31%), Positives = 46/83 (55%)
Query: 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASS 90
+S+T L + LS+ + +L+E F T KV + ++GKS+G+ F+ + S E A
Sbjct: 485 ESKT-LVLSNLSYSATEETLQEVFEK---ATFIKV-PQNQNGKSKGYAFIEFASFEDAKE 539
Query: 91 AQSAMDGQELNGRNIRVSFANDR 113
A ++ + +E+ GR IR+ R
Sbjct: 540 ALNSCNKREIEGRAIRLELQGPR 562
>UNIPROTKB|Q5RF26 [details] [associations]
symbol:NCL "Nucleolin" species:9601 "Pongo abelii"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 KO:K11294 CTD:4691
EMBL:CR857335 RefSeq:NP_001127178.1 UniGene:Pab.18146
ProteinModelPortal:Q5RF26 SMR:Q5RF26 GeneID:100174230
KEGG:pon:100174230 InParanoid:Q5RF26 Uniprot:Q5RF26
Length = 712
Score = 176 (67.0 bits), Expect = 2.3e-12, P = 2.3e-12
Identities = 41/106 (38%), Positives = 64/106 (60%)
Query: 8 GMLVRQNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVIT 67
G +R Q P+ S NA SQ LFV GLS T + +LKE+F G + A+++T
Sbjct: 552 GRAIRLELQGPRGSP-NA---RSQPSKTLFVKGLSEDTTEETLKESFD--GSV-RARIVT 604
Query: 68 ERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 113
+RE+G S+GFGFV ++S E A +A+ AM+ E++G + + +A +
Sbjct: 605 DRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 650
Score = 103 (41.3 bits), Expect = 0.00015, P = 0.00015
Identities = 26/83 (31%), Positives = 46/83 (55%)
Query: 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASS 90
+S+T L + LS+ + +L+E F T KV + ++GKS+G+ F+ + S E A
Sbjct: 486 ESKT-LVLSNLSYSATEETLQEVFEK---ATFIKV-PQNQNGKSKGYAFIEFASFEDAKE 540
Query: 91 AQSAMDGQELNGRNIRVSFANDR 113
A ++ + +E+ GR IR+ R
Sbjct: 541 ALNSCNKREIEGRAIRLELQGPR 563
>UNIPROTKB|F1Q0B0 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008022
"protein C-terminus binding" evidence=IEA] [GO:0005938 "cell
cortex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0030529 GO:GO:0042162
KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691 OMA:KERDTRT
EMBL:AAEX03014432 RefSeq:XP_850477.2 Ensembl:ENSCAFT00000017622
GeneID:608445 KEGG:cfa:608445 Uniprot:F1Q0B0
Length = 715
Score = 176 (67.0 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 41/106 (38%), Positives = 64/106 (60%)
Query: 8 GMLVRQNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVIT 67
G +R Q P+ S NA SQ LFV GLS T + +LKE+F G + A+++T
Sbjct: 555 GRAIRLELQGPRGSP-NA---RSQPSKTLFVKGLSEDTTEETLKESFD--GSV-RARIVT 607
Query: 68 ERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 113
+RE+G S+GFGFV ++S E A +A+ AM+ E++G + + +A +
Sbjct: 608 DRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 653
Score = 103 (41.3 bits), Expect = 0.00015, P = 0.00015
Identities = 26/83 (31%), Positives = 46/83 (55%)
Query: 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASS 90
+S+T L + LS+ + +L+E F T KV + ++GKS+G+ F+ + S E A
Sbjct: 489 ESKT-LVLSNLSYSATEETLQEVFEK---ATFIKV-PQNQNGKSKGYAFIEFASFEDAKE 543
Query: 91 AQSAMDGQELNGRNIRVSFANDR 113
A ++ + +E+ GR IR+ R
Sbjct: 544 ALNSCNKREIEGRAIRLELQGPR 566
>UNIPROTKB|I3LRH2 [details] [associations]
symbol:LOC100737210 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 OMA:RLEYSQS RefSeq:XP_003133770.2
Ensembl:ENSSSCT00000032422 GeneID:100519984 KEGG:ssc:100519984
Uniprot:I3LRH2
Length = 724
Score = 176 (67.0 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 42/106 (39%), Positives = 64/106 (60%)
Query: 8 GMLVRQNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVIT 67
G +R Q P+ S NA SQ LFV GLS T + +LKE+F G I A+++T
Sbjct: 563 GRAIRLELQGPRGSP-NA---RSQPSKTLFVKGLSEETTEETLKESFD--GSI-RARIVT 615
Query: 68 ERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 113
+RE+G S+GFGFV ++S E A +A+ AM+ E++G + + +A +
Sbjct: 616 DRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 661
Score = 100 (40.3 bits), Expect = 0.00033, P = 0.00033
Identities = 25/83 (30%), Positives = 46/83 (55%)
Query: 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASS 90
+S+T L + L++ + +L+E F T KV + ++GKS+G+ F+ + S E A
Sbjct: 497 ESKT-LVLSNLAYSATEETLQEVFEK---ATFIKV-PQNQNGKSKGYAFIEFASFEDAKE 551
Query: 91 AQSAMDGQELNGRNIRVSFANDR 113
A ++ + +E+ GR IR+ R
Sbjct: 552 ALNSCNKREIEGRAIRLELQGPR 574
>TAIR|locus:2017779 [details] [associations]
symbol:AT1G22910 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00523114
RefSeq:NP_973889.1 UniGene:At.26231 ProteinModelPortal:F4I321
SMR:F4I321 EnsemblPlants:AT1G22910.3 GeneID:838898
KEGG:ath:AT1G22910 ArrayExpress:F4I321 Uniprot:F4I321
Length = 347
Score = 170 (64.9 bits), Expect = 2.5e-12, P = 2.5e-12
Identities = 35/79 (44%), Positives = 53/79 (67%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQS 93
TK+FVGGL+W T ++K+ F FG+I EA VIT++ SG+S+G+GFVT+ E+A SA
Sbjct: 13 TKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSA-- 70
Query: 94 AMDGQE-LNGRNIRVSFAN 111
+D ++GR + A+
Sbjct: 71 CVDATPVIDGRRANCNLAS 89
>TAIR|locus:2050992 [details] [associations]
symbol:AT2G33410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC002332 HOGENOM:HOG000234441 KO:K14411 HSSP:Q61474
ProtClustDB:CLSN2913105 OMA:GNDSSYG EMBL:AY136298 EMBL:BT000416
IPI:IPI00531202 PIR:B84745 RefSeq:NP_180899.1 UniGene:At.22217
ProteinModelPortal:O22791 SMR:O22791 IntAct:O22791 STRING:O22791
PRIDE:O22791 ProMEX:O22791 EnsemblPlants:AT2G33410.1 GeneID:817905
KEGG:ath:AT2G33410 TAIR:At2g33410 InParanoid:O22791
PhylomeDB:O22791 ArrayExpress:O22791 Genevestigator:O22791
Uniprot:O22791
Length = 404
Score = 171 (65.3 bits), Expect = 2.9e-12, P = 2.9e-12
Identities = 33/85 (38%), Positives = 53/85 (62%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
M Q KLF+GG+SW TD++ L+E FSNFG++ + V+ E+ +G+ RGFGFV + ++ A
Sbjct: 1 MESDQGKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAF--SDPA 58
Query: 89 SSAQSAMDGQELNGRNIRVSFANDR 113
+ D ++ R++ V A R
Sbjct: 59 VIDRVLQDKHHIDNRDVDVKRAMSR 83
Score = 119 (46.9 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 31/109 (28%), Positives = 53/109 (48%)
Query: 6 KLGMLVRQNGQAPKASLINAVR-FMSQSQT---KLFVGGLSWGTDDSSLKEAFSNFGDIT 61
K M + A ++ NA R F S + K+FVGGL + F +G ++
Sbjct: 78 KRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTSDEFRAYFETYGPVS 137
Query: 62 EAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 110
+A ++ ++ + + RGFGFV++DS +S +LNG+ + V A
Sbjct: 138 DAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTF-HDLNGKQVEVKRA 185
>TAIR|locus:2173967 [details] [associations]
symbol:AT5G55550 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 ProtClustDB:CLSN2689626 EMBL:AY050796
EMBL:AY096460 IPI:IPI00543007 RefSeq:NP_568826.1 RefSeq:NP_974937.1
UniGene:At.6910 ProteinModelPortal:Q949Z3 SMR:Q949Z3 PRIDE:Q949Z3
EnsemblPlants:AT5G55550.2 EnsemblPlants:AT5G55550.3 GeneID:835649
KEGG:ath:AT5G55550 TAIR:At5g55550 InParanoid:Q949Z3 OMA:VSERVIM
PhylomeDB:Q949Z3 Genevestigator:Q949Z3 Uniprot:Q949Z3
Length = 460
Score = 172 (65.6 bits), Expect = 3.0e-12, P = 3.0e-12
Identities = 32/85 (37%), Positives = 52/85 (61%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
M KLF+GG+SW TD+ L++ FSN+GD+ EA ++ +R +G++RGFGF+ + +
Sbjct: 1 MESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFA--DPC 58
Query: 89 SSAQSAMDGQELNGRNIRVSFANDR 113
S + MD ++GR + A R
Sbjct: 59 VSERVIMDKHIIDGRTVEAKKAVPR 83
Score = 122 (48.0 bits), Expect = 7.7e-07, P = 7.7e-07
Identities = 26/76 (34%), Positives = 40/76 (52%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
K+FVGGL + K F FG I + V+ + + + RGFGF+T+DS+++
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHK 170
Query: 95 MDGQELNGRNIRVSFA 110
ELNG+ + V A
Sbjct: 171 TF-HELNGKLVEVKRA 185
>UNIPROTKB|K7GNR2 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
Length = 129
Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 32/76 (42%), Positives = 50/76 (65%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
KLF+GGL+ T++ +L+ F +G I E ++ +RE+ KSRGF FVT++S A A
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 95 MDGQELNGRNIRVSFA 110
M+G+ L+G+ I+V A
Sbjct: 69 MNGKSLDGKAIKVEQA 84
>UNIPROTKB|G4N7J4 [details] [associations]
symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
Uniprot:G4N7J4
Length = 479
Score = 172 (65.6 bits), Expect = 3.2e-12, P = 3.2e-12
Identities = 34/78 (43%), Positives = 52/78 (66%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95
+FVG LS +D L +AFS FG ++EA+V+ + ++G+SRG+GFV + A A S+M
Sbjct: 178 IFVGDLSNEVNDEVLTQAFSVFGSVSEARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSM 237
Query: 96 DGQELNGRNIRVSFANDR 113
DG+ L R IR ++AN +
Sbjct: 238 DGEWLGSRAIRCNWANQK 255
Score = 116 (45.9 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 26/81 (32%), Positives = 45/81 (55%)
Query: 33 QTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQ 92
QT +VG L+ T + + F NFG + E++ +R GF F+ DS+E+A+ A
Sbjct: 301 QTTCYVGNLTPYTTANDVVPLFQNFGYVVESRFQADR------GFAFIKMDSHENAAQAI 354
Query: 93 SAMDGQELNGRNIRVSFANDR 113
++G +NGR ++ S+ D+
Sbjct: 355 CGLNGYNVNGRPLKCSWGKDK 375
Score = 112 (44.5 bits), Expect = 9.8e-06, P = 9.8e-06
Identities = 23/75 (30%), Positives = 41/75 (54%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95
L+VGGL + L++ F G + K+I ++ + K +GFV YD +A A +
Sbjct: 87 LYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDKNA-KGYNYGFVEYDDPGAADRAMQTL 145
Query: 96 DGQELNGRNIRVSFA 110
+G+ ++ IRV++A
Sbjct: 146 NGRRVHQSEIRVNWA 160
>UNIPROTKB|O75526 [details] [associations]
symbol:RBMXL2 "RNA-binding motif protein, X-linked-like-2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 CTD:27288 HOGENOM:HOG000276235
HOVERGEN:HBG063314 OMA:GDFDLRP OrthoDB:EOG4WSWBK InterPro:IPR012604
Pfam:PF08081 eggNOG:NOG140744 HSSP:Q14011 EMBL:AF069682
EMBL:AC100875 EMBL:BC057796 EMBL:AF279289 IPI:IPI00004450
RefSeq:NP_055284.3 UniGene:Hs.121605 ProteinModelPortal:O75526
SMR:O75526 IntAct:O75526 STRING:O75526 PhosphoSite:O75526
PaxDb:O75526 PRIDE:O75526 Ensembl:ENST00000306904 GeneID:27288
KEGG:hsa:27288 UCSC:uc001mfc.2 GeneCards:GC11P007068
H-InvDB:HIX0035856 H-InvDB:HIX0171337 HGNC:HGNC:17886 HPA:HPA038912
HPA:HPA051842 MIM:605444 neXtProt:NX_O75526 PharmGKB:PA162400840
InParanoid:O75526 PhylomeDB:O75526 GenomeRNAi:27288 NextBio:50232
Bgee:O75526 CleanEx:HS_RBMXL2 Genevestigator:O75526 Uniprot:O75526
Length = 392
Score = 170 (64.9 bits), Expect = 3.4e-12, P = 3.4e-12
Identities = 33/76 (43%), Positives = 52/76 (68%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
KLF+GGL+ TD+ +L+ F +G I E ++ +RE+ KSRGF FVT++S A +A
Sbjct: 9 KLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAARD 68
Query: 95 MDGQELNGRNIRVSFA 110
M+G+ L+G+ I+V+ A
Sbjct: 69 MNGKSLDGKAIKVAQA 84
>TAIR|locus:2044370 [details] [associations]
symbol:AT2G46780 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT022057
IPI:IPI00944264 RefSeq:NP_182201.4 UniGene:At.22279
ProteinModelPortal:Q501B0 SMR:Q501B0 PRIDE:Q501B0
EnsemblPlants:AT2G46780.1 GeneID:819291 KEGG:ath:AT2G46780
TAIR:At2g46780 OMA:FPYSTYG PhylomeDB:Q501B0 ProtClustDB:CLSN2722623
Genevestigator:Q501B0 Uniprot:Q501B0
Length = 336
Score = 168 (64.2 bits), Expect = 3.8e-12, P = 3.8e-12
Identities = 35/86 (40%), Positives = 51/86 (59%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQS 93
TK+FVGGL+W T +++ F FG+I EA VIT++ +G+S+G+GFVT+ E+A A
Sbjct: 22 TKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQ 81
Query: 94 AM----DGQELNGRNIRVSFANDRPP 115
M DG+ N + RPP
Sbjct: 82 NMNPVIDGRRANCNLACLGAQKPRPP 107
>UNIPROTKB|D4A6U8 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
OrthoDB:EOG4B5P59 IPI:IPI00778030 ProteinModelPortal:D4A6U8
Ensembl:ENSRNOT00000041366 Uniprot:D4A6U8
Length = 382
Score = 169 (64.5 bits), Expect = 4.2e-12, P = 4.2e-12
Identities = 37/103 (35%), Positives = 60/103 (58%)
Query: 13 QNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESG 72
Q +++++ R SQ +FVG LS +K AF+ FG I++A+V+ + +G
Sbjct: 83 QKKDTSSSTVVSTQR--SQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATG 140
Query: 73 KSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRPP 115
KS+G+GFV++ + A +A M GQ L GR IR ++A +PP
Sbjct: 141 KSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 183
Score = 96 (38.9 bits), Expect = 0.00037, P = 0.00037
Identities = 20/77 (25%), Positives = 42/77 (54%)
Query: 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESAS 89
S ++ GG++ G + +++ FS FG I E +V ++ G+ F+ + S+ESA+
Sbjct: 206 SPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDK------GYSFIRFSSHESAA 259
Query: 90 SAQSAMDGQELNGRNIR 106
A +++G + G ++
Sbjct: 260 HAIVSVNGTTIEGHVVK 276
Score = 93 (37.8 bits), Expect = 0.00079, P = 0.00079
Identities = 21/75 (28%), Positives = 44/75 (58%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95
L+VG LS ++ + + FS G K+I + +G + FV + + A++A +AM
Sbjct: 5 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDT-AGNDP-YCFVEFHEHRHAAAALAAM 62
Query: 96 DGQELNGRNIRVSFA 110
+G+++ G+ ++V++A
Sbjct: 63 NGRKIMGKEVKVNWA 77
>UNIPROTKB|Q0VBZ6 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
regulation of cytokine biosynthetic process" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
Length = 384
Score = 169 (64.5 bits), Expect = 4.2e-12, P = 4.2e-12
Identities = 37/103 (35%), Positives = 60/103 (58%)
Query: 13 QNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESG 72
Q +++++ R SQ +FVG LS +K AF+ FG I++A+V+ + +G
Sbjct: 87 QKKDTSSSTVVSTQR--SQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATG 144
Query: 73 KSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRPP 115
KS+G+GFV++ + A +A M GQ L GR IR ++A +PP
Sbjct: 145 KSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 187
Score = 102 (41.0 bits), Expect = 8.4e-05, P = 8.4e-05
Identities = 22/77 (28%), Positives = 44/77 (57%)
Query: 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESAS 89
S S ++ GG++ G + +++ FS FG I E +V ++ G+ FV ++S+ESA+
Sbjct: 210 SPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDK------GYSFVRFNSHESAA 263
Query: 90 SAQSAMDGQELNGRNIR 106
A +++G + G ++
Sbjct: 264 HAIVSVNGTTIEGHVVK 280
>UNIPROTKB|F8W8I6 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
Uniprot:F8W8I6
Length = 385
Score = 169 (64.5 bits), Expect = 4.2e-12, P = 4.2e-12
Identities = 37/103 (35%), Positives = 60/103 (58%)
Query: 13 QNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESG 72
Q +++++ R SQ +FVG LS +K AF+ FG I++A+V+ + +G
Sbjct: 87 QKKDTSSSTVVSTQR--SQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATG 144
Query: 73 KSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRPP 115
KS+G+GFV++ + A +A M GQ L GR IR ++A +PP
Sbjct: 145 KSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 187
Score = 102 (41.0 bits), Expect = 8.5e-05, P = 8.5e-05
Identities = 22/77 (28%), Positives = 44/77 (57%)
Query: 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESAS 89
S S ++ GG++ G + +++ FS FG I E +V ++ G+ FV ++S+ESA+
Sbjct: 210 SPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDK------GYSFVRFNSHESAA 263
Query: 90 SAQSAMDGQELNGRNIR 106
A +++G + G ++
Sbjct: 264 HAIVSVNGTTIEGHVVK 280
Score = 93 (37.8 bits), Expect = 0.00080, P = 0.00080
Identities = 21/75 (28%), Positives = 44/75 (58%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95
L+VG LS ++ + + FS G K+I + +G + FV + + A++A +AM
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDT-AGNDP-YCFVEFHEHRHAAAALAAM 66
Query: 96 DGQELNGRNIRVSFA 110
+G+++ G+ ++V++A
Sbjct: 67 NGRKIMGKEVKVNWA 81
>UNIPROTKB|P31483 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
[GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
Length = 386
Score = 169 (64.5 bits), Expect = 4.3e-12, P = 4.3e-12
Identities = 37/103 (35%), Positives = 60/103 (58%)
Query: 13 QNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESG 72
Q +++++ R SQ +FVG LS +K AF+ FG I++A+V+ + +G
Sbjct: 87 QKKDTSSSTVVSTQR--SQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATG 144
Query: 73 KSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRPP 115
KS+G+GFV++ + A +A M GQ L GR IR ++A +PP
Sbjct: 145 KSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 187
Score = 102 (41.0 bits), Expect = 8.5e-05, P = 8.5e-05
Identities = 22/77 (28%), Positives = 44/77 (57%)
Query: 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESAS 89
S S ++ GG++ G + +++ FS FG I E +V ++ G+ FV ++S+ESA+
Sbjct: 210 SPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDK------GYSFVRFNSHESAA 263
Query: 90 SAQSAMDGQELNGRNIR 106
A +++G + G ++
Sbjct: 264 HAIVSVNGTTIEGHVVK 280
Score = 93 (37.8 bits), Expect = 0.00080, P = 0.00080
Identities = 21/75 (28%), Positives = 44/75 (58%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95
L+VG LS ++ + + FS G K+I + +G + FV + + A++A +AM
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDT-AGNDP-YCFVEFHEHRHAAAALAAM 66
Query: 96 DGQELNGRNIRVSFA 110
+G+++ G+ ++V++A
Sbjct: 67 NGRKIMGKEVKVNWA 81
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 169 (64.5 bits), Expect = 4.3e-12, P = 4.3e-12
Identities = 37/103 (35%), Positives = 60/103 (58%)
Query: 13 QNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESG 72
Q +++++ R SQ +FVG LS +K AF+ FG I++A+V+ + +G
Sbjct: 87 QKKDTSSSTVVSTQR--SQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATG 144
Query: 73 KSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRPP 115
KS+G+GFV++ + A +A M GQ L GR IR ++A +PP
Sbjct: 145 KSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 187
Score = 98 (39.6 bits), Expect = 0.00023, P = 0.00023
Identities = 21/77 (27%), Positives = 43/77 (55%)
Query: 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESAS 89
S + ++ GG++ G + +++ FS FG I E +V ++ G+ FV + S+ESA+
Sbjct: 210 SPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDK------GYSFVRFSSHESAA 263
Query: 90 SAQSAMDGQELNGRNIR 106
A +++G + G ++
Sbjct: 264 HAIVSVNGTTIEGHVVK 280
Score = 93 (37.8 bits), Expect = 0.00080, P = 0.00080
Identities = 21/75 (28%), Positives = 44/75 (58%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95
L+VG LS ++ + + FS G K+I + +G + FV + + A++A +AM
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDT-AGNDP-YCFVEFHEHRHAAAALAAM 66
Query: 96 DGQELNGRNIRVSFA 110
+G+++ G+ ++V++A
Sbjct: 67 NGRKIMGKEVKVNWA 81
>UNIPROTKB|H0YBQ4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
Uniprot:H0YBQ4
Length = 258
Score = 163 (62.4 bits), Expect = 4.4e-12, P = 4.4e-12
Identities = 33/80 (41%), Positives = 48/80 (60%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQS 93
T +++ DD LK+ F FG KV+T+ ESGKS+GFGFV+++ +E A A
Sbjct: 24 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 82
Query: 94 AMDGQELNGRNIRVSFANDR 113
M+G+ELNG+ I V A +
Sbjct: 83 EMNGKELNGKQIYVGRAQKK 102
Score = 141 (54.7 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 36/99 (36%), Positives = 52/99 (52%)
Query: 12 RQNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERES 71
RQ K + R L+V L G DD L++ FS FG IT AKV+ E
Sbjct: 105 RQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--G 162
Query: 72 GKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 110
G+S+GFGFV + S E A+ A + M+G+ + + + V+ A
Sbjct: 163 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 201
>FB|FBgn0027841 [details] [associations]
symbol:CstF-64 "Cleavage stimulation factor 64 kilodalton
subunit" species:7227 "Drosophila melanogaster" [GO:0006379 "mRNA
cleavage" evidence=ISS;NAS] [GO:0005848 "mRNA cleavage stimulating
factor complex" evidence=ISS;NAS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006379
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
HSSP:P33240 GO:GO:0005848 EMBL:BT004860 ProteinModelPortal:Q86NL1
SMR:Q86NL1 STRING:Q86NL1 PRIDE:Q86NL1 FlyBase:FBgn0027841
InParanoid:Q86NL1 OrthoDB:EOG4FBG8R ChiTaRS:CstF-64
ArrayExpress:Q86NL1 Bgee:Q86NL1 Uniprot:Q86NL1
Length = 437
Score = 170 (64.9 bits), Expect = 4.4e-12, P = 4.4e-12
Identities = 33/82 (40%), Positives = 48/82 (58%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
M +S +FVG + + + LKE FS G + K++ +RESGK +GFGF Y E+A
Sbjct: 11 MDKSMRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETA 70
Query: 89 SSAQSAMDGQELNGRNIRVSFA 110
SA ++G E+ GR +RV A
Sbjct: 71 LSAMRNLNGYEIGGRTLRVDNA 92
>UNIPROTKB|F1PWU8 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
Length = 393
Score = 169 (64.5 bits), Expect = 4.5e-12, P = 4.5e-12
Identities = 37/103 (35%), Positives = 60/103 (58%)
Query: 13 QNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESG 72
Q +++++ R SQ +FVG LS +K AF+ FG I++A+V+ + +G
Sbjct: 87 QKKDTSSSTVVSTQR--SQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATG 144
Query: 73 KSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRPP 115
KS+G+GFV++ + A +A M GQ L GR IR ++A +PP
Sbjct: 145 KSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 187
Score = 102 (41.0 bits), Expect = 8.7e-05, P = 8.7e-05
Identities = 22/77 (28%), Positives = 44/77 (57%)
Query: 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESAS 89
S S ++ GG++ G + +++ FS FG I E +V ++ G+ FV ++S+ESA+
Sbjct: 210 SPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDK------GYSFVRFNSHESAA 263
Query: 90 SAQSAMDGQELNGRNIR 106
A +++G + G ++
Sbjct: 264 HAIVSVNGTTIEGHVVK 280
>FB|FBgn0085391 [details] [associations]
symbol:CG34362 species:7227 "Drosophila melanogaster"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0000381 GeneTree:ENSGT00680000099967
RefSeq:NP_001163754.1 UniGene:Dm.13924 ProteinModelPortal:E1JIZ9
SMR:E1JIZ9 EnsemblMetazoa:FBtr0301397 GeneID:43362
KEGG:dme:Dmel_CG34362 FlyBase:FBgn0085391 GenomeRNAi:43362
NextBio:833552 Bgee:E1JIZ9 Uniprot:E1JIZ9
Length = 800
Score = 174 (66.3 bits), Expect = 4.5e-12, P = 4.5e-12
Identities = 34/83 (40%), Positives = 56/83 (67%)
Query: 33 QTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQ 92
Q +FVG LS + L+EAF+ FG+I++ +V+ + ++ KS+G+GFV++ A SA
Sbjct: 460 QFHIFVGDLSSEIETQQLREAFTPFGEISDCRVVRDPQTLKSKGYGFVSFIKKSEAESAI 519
Query: 93 SAMDGQELNGRNIRVSFANDRPP 115
+AM+GQ L R+IR ++A +PP
Sbjct: 520 TAMNGQWLGSRSIRTNWATRKPP 542
>FB|FBgn0085383 [details] [associations]
symbol:CG34354 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GeneTree:ENSGT00680000099967
KO:K13201 RefSeq:NP_001097953.1 UniGene:Dm.16369
ProteinModelPortal:A8JPX0 SMR:A8JPX0 EnsemblMetazoa:FBtr0112564
GeneID:5740528 KEGG:dme:Dmel_CG34354 UCSC:CG34354-RA
FlyBase:FBgn0085383 InParanoid:A8JPX0 OMA:KDAFTPF OrthoDB:EOG4FFBJQ
PhylomeDB:A8JPX0 GenomeRNAi:5740528 NextBio:20891566 Bgee:A8JPX0
Uniprot:A8JPX0
Length = 525
Score = 171 (65.3 bits), Expect = 4.9e-12, P = 4.9e-12
Identities = 33/83 (39%), Positives = 56/83 (67%)
Query: 33 QTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQ 92
Q +FVG LS + LK+AF+ FG+I++ +V+ + ++ KS+G+GFV++ A +A
Sbjct: 95 QFHIFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDPQTLKSKGYGFVSFVKKSEAETAI 154
Query: 93 SAMDGQELNGRNIRVSFANDRPP 115
+AM+GQ L R+IR ++A +PP
Sbjct: 155 TAMNGQWLGSRSIRTNWATRKPP 177
>TAIR|locus:2011726 [details] [associations]
symbol:AT1G76460 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0048573 "photoperiodism,
flowering" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 UniGene:At.43912
UniGene:At.70089 IPI:IPI00542968 RefSeq:NP_565132.2
UniGene:At.69045 ProteinModelPortal:F4I2E4 SMR:F4I2E4 PRIDE:F4I2E4
EnsemblPlants:AT1G76460.1 GeneID:843979 KEGG:ath:AT1G76460
OMA:YGPEYMY Uniprot:F4I2E4
Length = 285
Score = 164 (62.8 bits), Expect = 5.7e-12, P = 5.7e-12
Identities = 35/86 (40%), Positives = 54/86 (62%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQS 93
TK+FVGGL+W T +L++ F +G+I EA VI ++ +G+S+G+GFVT+ E+A A +
Sbjct: 24 TKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACA 83
Query: 94 ----AMDGQELNGRNIRVSFANDRPP 115
+DG+ N N+ S RPP
Sbjct: 84 DPTPIIDGRRANC-NL-ASLGRPRPP 107
>UNIPROTKB|H0Y6E7 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX Ensembl:ENST00000419968
Uniprot:H0Y6E7
Length = 292
Score = 164 (62.8 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 32/76 (42%), Positives = 50/76 (65%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
KLF+GGL+ T++ +L+ F +G I E ++ +RE+ KSRGF FVT++S A A
Sbjct: 11 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 70
Query: 95 MDGQELNGRNIRVSFA 110
M+G+ L+G+ I+V A
Sbjct: 71 MNGKSLDGKAIKVEQA 86
>UNIPROTKB|H3BT71 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX ProteinModelPortal:H3BT71
SMR:H3BT71 Ensembl:ENST00000562646 Bgee:H3BT71 Uniprot:H3BT71
Length = 296
Score = 164 (62.8 bits), Expect = 6.8e-12, P = 6.8e-12
Identities = 32/76 (42%), Positives = 50/76 (65%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
KLF+GGL+ T++ +L+ F +G I E ++ +RE+ KSRGF FVT++S A A
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 95 MDGQELNGRNIRVSFA 110
M+G+ L+G+ I+V A
Sbjct: 69 MNGKSLDGKAIKVEQA 84
>UNIPROTKB|Q96E39 [details] [associations]
symbol:RBMXL1 "RNA binding motif protein, X-linked-like-1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471097 GO:GO:0030529
eggNOG:COG0724 EMBL:AL139416 HSSP:Q14103 UniGene:Hs.481898
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 KO:K12885 EMBL:AL832554 EMBL:BC012942 IPI:IPI00061178
RefSeq:NP_001156008.1 RefSeq:NP_062556.2 ProteinModelPortal:Q96E39
SMR:Q96E39 IntAct:Q96E39 STRING:Q96E39 PhosphoSite:Q96E39
PaxDb:Q96E39 PRIDE:Q96E39 Ensembl:ENST00000321792
Ensembl:ENST00000399794 GeneID:494115 KEGG:hsa:494115
UCSC:uc001dms.3 CTD:494115 GeneCards:GC01M089446 HGNC:HGNC:25073
neXtProt:NX_Q96E39 PharmGKB:PA165752300 OMA:STIYVEN
PhylomeDB:Q96E39 GenomeRNAi:494115 NextBio:255993
ArrayExpress:Q96E39 Bgee:Q96E39 Uniprot:Q96E39
Length = 390
Score = 167 (63.8 bits), Expect = 7.3e-12, P = 7.3e-12
Identities = 33/76 (43%), Positives = 50/76 (65%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
KLF+GGL+ T++ +L+ F +G I E +I +RE+ KSRGF FVT++S A A
Sbjct: 9 KLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 95 MDGQELNGRNIRVSFA 110
M+G+ L+G+ I+V A
Sbjct: 69 MNGKSLDGKAIKVEQA 84
>UNIPROTKB|K7GRX3 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 InterPro:IPR012604
Pfam:PF08081 EMBL:FP102148 Ensembl:ENSSSCT00000035747
Uniprot:K7GRX3
Length = 306
Score = 164 (62.8 bits), Expect = 7.7e-12, P = 7.7e-12
Identities = 32/76 (42%), Positives = 50/76 (65%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
KLF+GGL+ T++ +L+ F +G I E ++ +RE+ KSRGF FVT++S A A
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 95 MDGQELNGRNIRVSFA 110
M+G+ L+G+ I+V A
Sbjct: 69 MNGKSLDGKAIKVEQA 84
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 167 (63.8 bits), Expect = 8.3e-12, P = 8.3e-12
Identities = 31/85 (36%), Positives = 50/85 (58%)
Query: 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESAS 89
++ +FVG LSW DD LK+ F + G + A+VI ER + +SRG+G+V +++ A
Sbjct: 164 TEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAE 223
Query: 90 SAQSAMDGQELNGRNIRVSFANDRP 114
A M G+E++GR I + +P
Sbjct: 224 KAIQEMQGKEIDGRPINCDMSTSKP 248
Score = 148 (57.2 bits), Expect = 9.8e-10, P = 9.8e-10
Identities = 26/85 (30%), Positives = 50/85 (58%)
Query: 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESAS 89
S+ LF+G LS+ D ++ E F+ G++ ++ T E+ + +GFG+V + + E A
Sbjct: 263 SEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAK 322
Query: 90 SAQSAMDGQELNGRNIRVSFANDRP 114
A A+ G+ ++ R +R+ F++ RP
Sbjct: 323 KALDALQGEYIDNRPVRLDFSSPRP 347
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 168 (64.2 bits), Expect = 8.7e-12, P = 8.7e-12
Identities = 33/78 (42%), Positives = 52/78 (66%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95
+FVG LS +D L +AFS FG ++EA+V+ + ++G+SRG+GFV + A A ++M
Sbjct: 184 IFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALTSM 243
Query: 96 DGQELNGRNIRVSFANDR 113
DG+ L R IR ++AN +
Sbjct: 244 DGEWLGSRAIRCNWANQK 261
Score = 136 (52.9 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 29/83 (34%), Positives = 48/83 (57%)
Query: 33 QTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQ 92
QT +VG L+ T + + F NFG + E ++ +R GF F+ D++E+A+SA
Sbjct: 307 QTTCYVGNLTPYTTQNDIVPLFQNFGYVIETRMQADR------GFAFIKMDTHENAASAI 360
Query: 93 SAMDGQELNGRNIRVSFANDRPP 115
++G +NGR ++ S+ DRPP
Sbjct: 361 CQLNGYNVNGRPLKCSWGKDRPP 383
Score = 112 (44.5 bits), Expect = 9.7e-06, P = 9.7e-06
Identities = 23/76 (30%), Positives = 41/76 (53%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERE-SGKSRGFGFVTYDSNESASSAQSA 94
L+VGGL + LK+ F G + K+I ++ + K +GFV +D +A A
Sbjct: 92 LYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFNSKGANYGFVEFDDPGAAERAMQT 151
Query: 95 MDGQELNGRNIRVSFA 110
++G+ ++ IRV++A
Sbjct: 152 LNGRRIHQSEIRVNWA 167
>ZFIN|ZDB-GENE-030131-579 [details] [associations]
symbol:rbmx "RNA binding motif protein, X-linked"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISS] [GO:0044530 "supraspliceosomal complex" evidence=ISS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISS]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0051260 "protein homooligomerization"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0070062 "extracellular vesicular exosome" evidence=ISS]
[GO:0071347 "cellular response to interleukin-1" evidence=ISS]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-579
GO:GO:0007275 GO:GO:0008380 GO:GO:0000166 GO:GO:0070062
GO:GO:0051260 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
GO:GO:0044530 HSSP:Q14103 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AJ717349 EMBL:AY394938 EMBL:AL929434
EMBL:BC049509 EMBL:BC071326 IPI:IPI00509177 RefSeq:NP_997763.1
UniGene:Dr.76840 ProteinModelPortal:Q7ZWA3 SMR:Q7ZWA3 STRING:Q7ZWA3
PRIDE:Q7ZWA3 Ensembl:ENSDART00000007927 Ensembl:ENSDART00000131024
GeneID:321860 KEGG:dre:321860 CTD:27316 InParanoid:Q6TLG7 KO:K12885
OMA:PFFKGMS OrthoDB:EOG4CNQSK NextBio:20807559 ArrayExpress:Q7ZWA3
Bgee:Q7ZWA3 Uniprot:Q7ZWA3
Length = 379
Score = 166 (63.5 bits), Expect = 8.7e-12, P = 8.7e-12
Identities = 34/76 (44%), Positives = 50/76 (65%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
KLF+GGL+ T + L+ FS FG I+E ++ +RE+ KSRGF FVTY++ A A
Sbjct: 9 KLFIGGLNTETSEKVLEAYFSKFGRISEVLLMKDRETNKSRGFAFVTYENPGDAKDAARE 68
Query: 95 MDGQELNGRNIRVSFA 110
M+G+ L+G+ I+V A
Sbjct: 69 MNGKPLDGKPIKVEQA 84
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 162 (62.1 bits), Expect = 9.2e-12, P = 9.2e-12
Identities = 33/80 (41%), Positives = 51/80 (63%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95
+FVG LS +K AF+ FG I++A+V+ + +GKS+G+GFV++ + A +A M
Sbjct: 93 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 152
Query: 96 DGQELNGRNIRVSFANDRPP 115
GQ L GR IR ++A +PP
Sbjct: 153 GGQWLGGRQIRTNWATRKPP 172
Score = 93 (37.8 bits), Expect = 0.00048, P = 0.00048
Identities = 21/75 (28%), Positives = 44/75 (58%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95
L+VG LS ++ + + FS G K+I + +G + FV + + A++A +AM
Sbjct: 5 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDT-AGNDP-YCFVEFHEHRHAAAALAAM 62
Query: 96 DGQELNGRNIRVSFA 110
+G+++ G+ ++V++A
Sbjct: 63 NGRKIMGKEVKVNWA 77
>ZFIN|ZDB-GENE-030131-618 [details] [associations]
symbol:hnrnpa0l "heterogeneous nuclear
ribonucleoprotein A0, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-618
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 EMBL:BX088707
EMBL:BC050513 IPI:IPI00489762 UniGene:Dr.75590 UniGene:Dr.79301
SMR:Q7ZU48 STRING:Q7ZU48 Ensembl:ENSDART00000052511
InParanoid:Q7ZU48 OMA:ICRRIAP Uniprot:Q7ZU48
Length = 302
Score = 163 (62.4 bits), Expect = 9.6e-12, P = 9.6e-12
Identities = 34/76 (44%), Positives = 48/76 (63%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
K+FVGGL +D L++ FS FG I +A+VIT++++GK RGFGFV +D N+SA A
Sbjct: 98 KIFVGGLKDDIEDEHLQDYFSQFGPIEKAQVITDKDTGKKRGFGFVYFDDNDSADKAV-V 156
Query: 95 MDGQELNGRNIRVSFA 110
M + G + V A
Sbjct: 157 MKFHSICGHKVEVKKA 172
Score = 142 (55.0 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 31/77 (40%), Positives = 44/77 (57%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
M+ KLFVGGL+ T D L+ F +G +T+ V+ + +SR FGFVTY S E A
Sbjct: 1 MTNQLCKLFVGGLNVQTTDEGLRAHFEQYGQLTDCVVVMNQPLQRSRCFGFVTYSSTEEA 60
Query: 89 SSAQSAMDGQELNGRNI 105
+A SA ++G N+
Sbjct: 61 DAAMSARP-HIVDGNNV 76
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 162 (62.1 bits), Expect = 9.8e-12, P = 9.8e-12
Identities = 33/80 (41%), Positives = 51/80 (63%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95
+FVG LS +K AF+ FG I++A+V+ + +GKS+G+GFV++ + A +A M
Sbjct: 97 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Query: 96 DGQELNGRNIRVSFANDRPP 115
GQ L GR IR ++A +PP
Sbjct: 157 GGQWLGGRQIRTNWATRKPP 176
Score = 93 (37.8 bits), Expect = 0.00049, P = 0.00049
Identities = 21/75 (28%), Positives = 44/75 (58%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95
L+VG LS ++ + + FS G K+I + +G + FV + + A++A +AM
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDT-AGNDP-YCFVEFHEHRHAAAALAAM 66
Query: 96 DGQELNGRNIRVSFA 110
+G+++ G+ ++V++A
Sbjct: 67 NGRKIMGKEVKVNWA 81
>UNIPROTKB|F1P336 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074656
EMBL:AADN02020638 EMBL:AADN02020639 IPI:IPI00680028
Ensembl:ENSGALT00000033265 ArrayExpress:F1P336 Uniprot:F1P336
Length = 689
Score = 170 (64.9 bits), Expect = 9.8e-12, P = 9.8e-12
Identities = 36/86 (41%), Positives = 58/86 (67%)
Query: 28 FMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNES 87
F QS+T LFV GLS T + +L+E+F G I+ A+++T+R++G S+GFGFV + S E
Sbjct: 546 FNQQSKT-LFVRGLSEDTTEETLRESFE--GSIS-ARIVTDRDTGSSKGFGFVDFSSPED 601
Query: 88 ASSAQSAMDGQELNGRNIRVSFANDR 113
A +A+ AM+ E++G + + FA +
Sbjct: 602 AKAAKEAMEDGEIDGNKVTLDFAKPK 627
Score = 101 (40.6 bits), Expect = 0.00024, P = 0.00024
Identities = 24/81 (29%), Positives = 44/81 (54%)
Query: 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASS 90
+S+T L V LS+ + +L+E F T K+ + G+ +G+ FV + + E A
Sbjct: 457 ESKT-LIVNNLSYAASEETLQELFKK---ATSIKM-PQNNQGRPKGYAFVEFPTAEDAKE 511
Query: 91 AQSAMDGQELNGRNIRVSFAN 111
A ++ + E+ GR IR+ F++
Sbjct: 512 ALNSCNNTEIEGRAIRLEFSS 532
>UNIPROTKB|F1NU40 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005938 "cell cortex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0042162 "telomeric
DNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005938
GO:GO:0005654 GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0042162
GeneTree:ENSGT00550000074656 IPI:IPI00577202 OMA:ENAMEIR
EMBL:AADN02020638 EMBL:AADN02020639 Ensembl:ENSGALT00000012486
ArrayExpress:F1NU40 Uniprot:F1NU40
Length = 691
Score = 170 (64.9 bits), Expect = 9.8e-12, P = 9.8e-12
Identities = 36/86 (41%), Positives = 58/86 (67%)
Query: 28 FMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNES 87
F QS+T LFV GLS T + +L+E+F G I+ A+++T+R++G S+GFGFV + S E
Sbjct: 548 FNQQSKT-LFVRGLSEDTTEETLRESFE--GSIS-ARIVTDRDTGSSKGFGFVDFSSPED 603
Query: 88 ASSAQSAMDGQELNGRNIRVSFANDR 113
A +A+ AM+ E++G + + FA +
Sbjct: 604 AKAAKEAMEDGEIDGNKVTLDFAKPK 629
Score = 101 (40.6 bits), Expect = 0.00024, P = 0.00024
Identities = 24/81 (29%), Positives = 44/81 (54%)
Query: 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASS 90
+S+T L V LS+ + +L+E F T K+ + G+ +G+ FV + + E A
Sbjct: 459 ESKT-LIVNNLSYAASEETLQELFKK---ATSIKM-PQNNQGRPKGYAFVEFPTAEDAKE 513
Query: 91 AQSAMDGQELNGRNIRVSFAN 111
A ++ + E+ GR IR+ F++
Sbjct: 514 ALNSCNNTEIEGRAIRLEFSS 534
>UNIPROTKB|P15771 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 EMBL:X17199 EMBL:M21791
IPI:IPI00577202 PIR:S08414 RefSeq:NP_990596.1 UniGene:Gga.3663
ProteinModelPortal:P15771 SMR:P15771 STRING:P15771 PRIDE:P15771
GeneID:396201 KEGG:gga:396201 CTD:4691 HOGENOM:HOG000113885
InParanoid:P15771 NextBio:20816253 Uniprot:P15771
Length = 694
Score = 170 (64.9 bits), Expect = 9.9e-12, P = 9.9e-12
Identities = 36/86 (41%), Positives = 58/86 (67%)
Query: 28 FMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNES 87
F QS+T LFV GLS T + +L+E+F G I+ A+++T+R++G S+GFGFV + S E
Sbjct: 548 FNQQSKT-LFVRGLSEDTTEETLRESFE--GSIS-ARIVTDRDTGSSKGFGFVDFSSPED 603
Query: 88 ASSAQSAMDGQELNGRNIRVSFANDR 113
A +A+ AM+ E++G + + FA +
Sbjct: 604 AKAAKEAMEDGEIDGNKVTLDFAKPK 629
Score = 101 (40.6 bits), Expect = 0.00024, P = 0.00024
Identities = 24/81 (29%), Positives = 44/81 (54%)
Query: 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASS 90
+S+T L V LS+ + +L+E F T K+ + G+ +G+ FV + + E A
Sbjct: 459 ESKT-LIVNNLSYAASEETLQELFKK---ATSIKM-PQNNQGRPKGYAFVEFPTAEDAKE 513
Query: 91 AQSAMDGQELNGRNIRVSFAN 111
A ++ + E+ GR IR+ F++
Sbjct: 514 ALNSCNNTEIEGRAIRLEFSS 534
>DICTYBASE|DDB_G0287335 [details] [associations]
symbol:DDB_G0287335 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0287335 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000100 RefSeq:XP_637244.1
ProteinModelPortal:Q54KH9 PRIDE:Q54KH9 EnsemblProtists:DDB0233757
GeneID:8626075 KEGG:ddi:DDB_G0287335 eggNOG:NOG271892
InParanoid:Q54KH9 OMA:MEAENEM ProtClustDB:CLSZ2430003
Uniprot:Q54KH9
Length = 91
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 31/79 (39%), Positives = 49/79 (62%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
K+FV L W +LK+ FS +G I + V+ ++ + +SRGFGFVT+D ++S A A
Sbjct: 4 KIFVSQLPWSVCREALKQHFSKYGSINHSYVVVDKVTKRSRGFGFVTFDQSDSVQKAMEA 63
Query: 95 MDGQELNGRNIRVSFANDR 113
+ E+ GR + VSFA ++
Sbjct: 64 EN--EMGGRKLVVSFAQEK 80
>UNIPROTKB|I3LBN9 [details] [associations]
symbol:TRA2B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048026 "positive regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0000398 GO:GO:0048026 GO:GO:0000381
GeneTree:ENSGT00700000104309 OMA:YDDREYY Ensembl:ENSSSCT00000025696
Uniprot:I3LBN9
Length = 280
Score = 161 (61.7 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 32/80 (40%), Positives = 51/80 (63%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95
L V GLS T +S L+E FS +G I + ++ +++S +SRGF FV +++ + A A+
Sbjct: 112 LGVFGLSLYTTESDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 171
Query: 96 DGQELNGRNIRVSFANDRPP 115
+G EL+GR IRV F+ + P
Sbjct: 172 NGMELDGRRIRVDFSITKRP 191
>ZFIN|ZDB-GENE-030131-2249 [details] [associations]
symbol:hnrnpa0a "heterogeneous nuclear
ribonucleoprotein A0a" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2249
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4W6NX4
EMBL:BC066672 IPI:IPI00995382 RefSeq:NP_997810.1 UniGene:Dr.75559
ProteinModelPortal:Q6NYB0 SMR:Q6NYB0 STRING:Q6NYB0 PRIDE:Q6NYB0
GeneID:323529 KEGG:dre:323529 CTD:323529 InParanoid:Q6NYB0
NextBio:20808302 ArrayExpress:Q6NYB0 Bgee:Q6NYB0 Uniprot:Q6NYB0
Length = 305
Score = 162 (62.1 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 31/76 (40%), Positives = 49/76 (64%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
K+F+GGL ++ L++ FS FG + +A+VIT++E+GK RGFGFV ++ N+SA A
Sbjct: 102 KIFIGGLKDDIEEDHLRDCFSQFGAVEKAEVITDKETGKKRGFGFVYFEDNDSADKAV-V 160
Query: 95 MDGQELNGRNIRVSFA 110
+ +NG + V A
Sbjct: 161 LKFHMINGHKVEVKKA 176
Score = 147 (56.8 bits), Expect = 6.1e-10, P = 6.1e-10
Identities = 33/82 (40%), Positives = 46/82 (56%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
M KLFVGGL+ T D L+ F +G +T+ V+ ++ +SR FGFVTY S + A
Sbjct: 5 MENQLCKLFVGGLNVQTTDDGLRNHFEQYGKLTDCVVVQNQQLKRSRCFGFVTYSSPDEA 64
Query: 89 SSAQSAMDGQELNGRNIRVSFA 110
SA SA L+G N+ + A
Sbjct: 65 DSAMSARP-HILDGNNVELKRA 85
>TAIR|locus:2179939 [details] [associations]
symbol:AtRZ-1c "AtRZ-1c" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA;IDA] [GO:0003723
"RNA binding" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IEP]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 EMBL:CP002688 GO:GO:0005730
GO:GO:0000166 GO:GO:0046872 GO:GO:0009409 GO:GO:0009414
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 HOGENOM:HOG000276232 HSSP:Q14103 KO:K12885
ProtClustDB:CLSN2718554 EMBL:AY092975 EMBL:AY114645 IPI:IPI00520891
RefSeq:NP_196048.1 UniGene:At.33149 ProteinModelPortal:Q8RWN5
SMR:Q8RWN5 IntAct:Q8RWN5 STRING:Q8RWN5 PRIDE:Q8RWN5
EnsemblPlants:AT5G04280.1 GeneID:830307 KEGG:ath:AT5G04280
TAIR:At5g04280 InParanoid:Q8RWN5 OMA:ESIREMH PhylomeDB:Q8RWN5
ArrayExpress:Q8RWN5 Genevestigator:Q8RWN5 Uniprot:Q8RWN5
Length = 310
Score = 162 (62.1 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 31/80 (38%), Positives = 50/80 (62%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQS 93
+++FVGGLS D L+ AFS FGDI + +++ ER++G+SRGFGF+T+ + +
Sbjct: 7 SRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIR 66
Query: 94 AMDGQELNGRNIRVSFANDR 113
M G++ R I V+ A +
Sbjct: 67 EMHGRDFGDRVISVNRAEPK 86
>UNIPROTKB|F1NH82 [details] [associations]
symbol:F1NH82 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 GeneTree:ENSGT00640000091232 EMBL:AADN02025122
EMBL:AADN02025123 EMBL:AADN02025124 IPI:IPI00574035
Ensembl:ENSGALT00000023332 Uniprot:F1NH82
Length = 469
Score = 166 (63.5 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 34/80 (42%), Positives = 48/80 (60%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQS 93
T +++ DD LKE F FG KV+T+ ESGKS+GFGFV+++ +E A A
Sbjct: 23 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 81
Query: 94 AMDGQELNGRNIRVSFANDR 113
M+G+ELNG+ I V A +
Sbjct: 82 EMNGKELNGKQIYVGRAQKK 101
Score = 141 (54.7 bits), Expect = 7.0e-09, P = 7.0e-09
Identities = 36/99 (36%), Positives = 52/99 (52%)
Query: 12 RQNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERES 71
RQ K + R L+V L G DD L++ FS FG IT AKV+ E
Sbjct: 104 RQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--G 161
Query: 72 GKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 110
G+S+GFGFV + S E A+ A + M+G+ + + + V+ A
Sbjct: 162 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 200
>UNIPROTKB|F1NZD3 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0070062 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006366 GO:GO:0006509 GO:GO:0005719 GO:GO:0071347
GO:GO:0071013 GO:GO:0000381 GeneTree:ENSGT00700000104336
InterPro:IPR012604 Pfam:PF08081 OMA:PFFKGMS EMBL:AADN02013316
EMBL:AADN02013317 IPI:IPI00575141 Ensembl:ENSGALT00000010428
Uniprot:F1NZD3
Length = 385
Score = 164 (62.8 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 32/76 (42%), Positives = 50/76 (65%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
KLF+GGL+ T++ +L+ F +G I E ++ +RE+ KSRGF FVT++S A A
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 95 MDGQELNGRNIRVSFA 110
M+G+ L+G+ I+V A
Sbjct: 69 MNGKSLDGKAIKVEQA 84
>UNIPROTKB|F1RQ90 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071347 "cellular response to interleukin-1"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0070062 "extracellular vesicular exosome"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=IEA] [GO:0006509 "membrane
protein ectodomain proteolysis" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0001047 "core promoter binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0070062
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006366 GO:GO:0006509
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0000381
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
CTD:27316 KO:K12885 OMA:PFFKGMS EMBL:FP102148 RefSeq:NP_001231025.1
UniGene:Ssc.97220 Ensembl:ENSSSCT00000013889
Ensembl:ENSSSCT00000034598 GeneID:100158042 KEGG:ssc:100158042
Uniprot:F1RQ90
Length = 390
Score = 164 (62.8 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 32/76 (42%), Positives = 50/76 (65%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
KLF+GGL+ T++ +L+ F +G I E ++ +RE+ KSRGF FVT++S A A
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 95 MDGQELNGRNIRVSFA 110
M+G+ L+G+ I+V A
Sbjct: 69 MNGKSLDGKAIKVEQA 84
>RGD|1565256 [details] [associations]
symbol:Rbmx "RNA binding motif protein, X-linked" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=ISO] [GO:0003682 "chromatin binding" evidence=ISO]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal
complex" evidence=IDA] [GO:0005719 "nuclear euchromatin"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=IMP] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISO] [GO:0044530 "supraspliceosomal complex" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0070062
"extracellular vesicular exosome" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] [GO:0071347 "cellular
response to interleukin-1" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1565256 GO:GO:0045893 GO:GO:0000166 GO:GO:0003727
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681 eggNOG:COG0724
GO:GO:0006376 EMBL:CH474106 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 CTD:27316 KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK
EMBL:BC097479 IPI:IPI00370207 RefSeq:NP_001020834.1
UniGene:Rn.229269 ProteinModelPortal:Q4V898 SMR:Q4V898
STRING:Q4V898 PhosphoSite:Q4V898 PRIDE:Q4V898
Ensembl:ENSRNOT00000001154 GeneID:302855 KEGG:rno:302855
InParanoid:Q4V898 NextBio:650249 Genevestigator:Q4V898
Uniprot:Q4V898
Length = 390
Score = 164 (62.8 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 32/76 (42%), Positives = 50/76 (65%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
KLF+GGL+ T++ +L+ F +G I E ++ +RE+ KSRGF FVT++S A A
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 95 MDGQELNGRNIRVSFA 110
M+G+ L+G+ I+V A
Sbjct: 69 MNGKSLDGKAIKVEQA 84
>UNIPROTKB|D3JUI8 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9913 "Bos taurus" [GO:0071347
"cellular response to interleukin-1" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0070062
"extracellular vesicular exosome" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0044530 "supraspliceosomal complex"
evidence=IEA] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005719 "nuclear euchromatin"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001047 "core promoter
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:DAAA02067753
EMBL:GU304600 IPI:IPI00706784 RefSeq:NP_001165510.1 UniGene:Bt.7342
Ensembl:ENSBTAT00000017696 GeneID:509591 KEGG:bta:509591
NextBio:20869035 Uniprot:D3JUI8
Length = 391
Score = 164 (62.8 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 32/76 (42%), Positives = 50/76 (65%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
KLF+GGL+ T++ +L+ F +G I E ++ +RE+ KSRGF FVT++S A A
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 95 MDGQELNGRNIRVSFA 110
M+G+ L+G+ I+V A
Sbjct: 69 MNGKSLDGKAIKVEQA 84
>UNIPROTKB|P38159 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
[GO:0044530 "supraspliceosomal complex" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0001047 "core promoter binding"
evidence=IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=IDA] [GO:0071347 "cellular response to interleukin-1"
evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=IDA] [GO:0005719 "nuclear
euchromatin" evidence=IDA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0000166 GO:GO:0070062
GO:GO:0051260 Reactome:REACT_1675 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0000398
GO:GO:0071013 EMBL:AL683813 EMBL:CH471150 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:Z23064 EMBL:AF266723
EMBL:AF266720 EMBL:AF266721 EMBL:AF266722 EMBL:AY464692
EMBL:AK096015 EMBL:AK304868 EMBL:BC006550 EMBL:BC007435
IPI:IPI00304692 IPI:IPI00552938 RefSeq:NP_001158275.1
RefSeq:NP_002130.2 UniGene:Hs.380118 UniGene:Hs.710162
ProteinModelPortal:P38159 SMR:P38159 DIP:DIP-34447N IntAct:P38159
MINT:MINT-5000999 STRING:P38159 PhosphoSite:P38159 DMDM:23503093
SWISS-2DPAGE:P38159 PaxDb:P38159 PRIDE:P38159 DNASU:27316
Ensembl:ENST00000320676 Ensembl:ENST00000431446 GeneID:27316
KEGG:hsa:27316 UCSC:uc004fad.1 GeneCards:GC0XM135951 HGNC:HGNC:9910
MIM:300199 neXtProt:NX_P38159 PharmGKB:PA34277 HOGENOM:HOG000070250
InParanoid:P38159 PhylomeDB:P38159 ChiTaRS:RBMX GenomeRNAi:27316
NextBio:50322 ArrayExpress:P38159 Bgee:P38159 CleanEx:HS_RBMX
Genevestigator:P38159 GermOnline:ENSG00000147274 Uniprot:P38159
Length = 391
Score = 164 (62.8 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 32/76 (42%), Positives = 50/76 (65%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
KLF+GGL+ T++ +L+ F +G I E ++ +RE+ KSRGF FVT++S A A
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 95 MDGQELNGRNIRVSFA 110
M+G+ L+G+ I+V A
Sbjct: 69 MNGKSLDGKAIKVEQA 84
>UNIPROTKB|A5A6M3 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9598 "Pan troglodytes" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724
GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 EMBL:AB222151 RefSeq:NP_001128678.1 UniGene:Ptr.2579
ProteinModelPortal:A5A6M3 SMR:A5A6M3 PRIDE:A5A6M3 GeneID:738482
KEGG:ptr:738482 NextBio:20905775 Uniprot:A5A6M3
Length = 391
Score = 164 (62.8 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 32/76 (42%), Positives = 50/76 (65%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
KLF+GGL+ T++ +L+ F +G I E ++ +RE+ KSRGF FVT++S A A
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 95 MDGQELNGRNIRVSFA 110
M+G+ L+G+ I+V A
Sbjct: 69 MNGKSLDGKAIKVEQA 84
>UNIPROTKB|Q4R7F0 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9541 "Macaca fascicularis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 GO:GO:0048026
GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AB168869 ProteinModelPortal:Q4R7F0 SMR:Q4R7F0
Uniprot:Q4R7F0
Length = 391
Score = 164 (62.8 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 32/76 (42%), Positives = 50/76 (65%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
KLF+GGL+ T++ +L+ F +G I E ++ +RE+ KSRGF FVT++S A A
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 95 MDGQELNGRNIRVSFA 110
M+G+ L+G+ I+V A
Sbjct: 69 MNGKSLDGKAIKVEQA 84
>MGI|MGI:1343044 [details] [associations]
symbol:Rbmx "RNA binding motif protein, X chromosome"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005719 "nuclear euchromatin" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006509 "membrane protein ectodomain proteolysis" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0070062 "extracellular
vesicular exosome" evidence=ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:0071347 "cellular response to
interleukin-1" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343044
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724
EMBL:CH466583 HSSP:Q61474 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 CTD:27316 KO:K12885 ChiTaRS:RBMX EMBL:AJ237846
EMBL:AJ237847 EMBL:AK087940 EMBL:AK135164 EMBL:AK165006
EMBL:AL672106 EMBL:BC003710 IPI:IPI00124979 RefSeq:NP_001160095.1
RefSeq:NP_035382.1 UniGene:Mm.28275 ProteinModelPortal:Q9WV02
SMR:Q9WV02 IntAct:Q9WV02 STRING:Q9WV02 PhosphoSite:Q9WV02
PRIDE:Q9WV02 Ensembl:ENSMUST00000114726 Ensembl:ENSMUST00000114730
Ensembl:ENSMUST00000140384 GeneID:19655 KEGG:mmu:19655
UCSC:uc009thi.2 InParanoid:Q9R0Y0 NextBio:296930 Bgee:Q9WV02
Genevestigator:Q9WV02 Uniprot:Q9WV02
Length = 391
Score = 164 (62.8 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 32/76 (42%), Positives = 50/76 (65%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
KLF+GGL+ T++ +L+ F +G I E ++ +RE+ KSRGF FVT++S A A
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 95 MDGQELNGRNIRVSFA 110
M+G+ L+G+ I+V A
Sbjct: 69 MNGKSLDGKAIKVEQA 84
>UNIPROTKB|E2R068 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
OMA:PFFKGMS EMBL:AAEX03026954 Ensembl:ENSCAFT00000030124
Uniprot:E2R068
Length = 392
Score = 164 (62.8 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 32/76 (42%), Positives = 50/76 (65%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
KLF+GGL+ T++ +L+ F +G I E ++ +RE+ KSRGF FVT++S A A
Sbjct: 10 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 69
Query: 95 MDGQELNGRNIRVSFA 110
M+G+ L+G+ I+V A
Sbjct: 70 MNGKSLDGKAIKVEQA 85
>MGI|MGI:97286 [details] [associations]
symbol:Ncl "nucleolin" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=ISO;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005938
"cell cortex" evidence=ISO] [GO:0008022 "protein C-terminus
binding" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0042162 "telomeric DNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:97286 GO:GO:0005938 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0001525
GO:GO:0003723 GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691
HOGENOM:HOG000113885 OMA:KERDTRT OrthoDB:EOG45MN5J ChiTaRS:NCL
EMBL:X07699 EMBL:AF318184 EMBL:AK050958 EMBL:AK083307 EMBL:AK144894
EMBL:AK161706 EMBL:AK163275 EMBL:BC005460 EMBL:M22089
IPI:IPI00317794 PIR:A29958 RefSeq:NP_035010.3 UniGene:Mm.154378
UniGene:Mm.474153 ProteinModelPortal:P09405 SMR:P09405
IntAct:P09405 STRING:P09405 PhosphoSite:P09405
REPRODUCTION-2DPAGE:P09405 PaxDb:P09405 PRIDE:P09405
Ensembl:ENSMUST00000027438 GeneID:17975 KEGG:mmu:17975
UCSC:uc007bvl.1 InParanoid:P09405 NextBio:292933 PMAP-CutDB:P09405
Bgee:P09405 CleanEx:MM_NCL Genevestigator:P09405
GermOnline:ENSMUSG00000026234 Uniprot:P09405
Length = 707
Score = 168 (64.2 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 34/84 (40%), Positives = 55/84 (65%)
Query: 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESAS 89
SQ LFV GLS T + +LKE+F G + A+++T+RE+G S+GFGFV ++S E A
Sbjct: 565 SQPSKTLFVKGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAK 621
Query: 90 SAQSAMDGQELNGRNIRVSFANDR 113
+A+ AM+ E++G + + +A +
Sbjct: 622 AAKEAMEDGEIDGNKVTLDWAKPK 645
>UNIPROTKB|E9PK21 [details] [associations]
symbol:PPIE "Peptidyl-prolyl cis-trans isomerase E"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AL035404 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AL033527 EMBL:AL049824 HGNC:HGNC:9258
ChiTaRS:PPIE IPI:IPI00985437 ProteinModelPortal:E9PK21 SMR:E9PK21
Ensembl:ENST00000470213 ArrayExpress:E9PK21 Bgee:E9PK21
Uniprot:E9PK21
Length = 208
Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 35/82 (42%), Positives = 51/82 (62%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
M+ ++ L+VGGL+ DD L AF FGDIT+ ++ + E+ K RGF FV ++ E A
Sbjct: 1 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDA 60
Query: 89 SSAQSAMDGQELNGRNIRVSFA 110
++A M+ EL GR IRV+ A
Sbjct: 61 AAAIDNMNESELFGRTIRVNLA 82
>TAIR|locus:2088756 [details] [associations]
symbol:AT3G20930 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0000023 "maltose
metabolic process" evidence=RCA] [GO:0010027 "thylakoid membrane
organization" evidence=RCA] [GO:0019252 "starch biosynthetic
process" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:Q9V535 eggNOG:COG0724 EMBL:AY099828
EMBL:AY084565 EMBL:BT002195 IPI:IPI00537313 RefSeq:NP_566672.1
UniGene:At.43817 ProteinModelPortal:Q8L440 SMR:Q8L440 PRIDE:Q8L440
EnsemblPlants:AT3G20930.1 GeneID:821642 KEGG:ath:AT3G20930
TAIR:At3g20930 InParanoid:Q8L440 OMA:KAQMVDH PhylomeDB:Q8L440
ProtClustDB:CLSN2688611 ArrayExpress:Q8L440 Genevestigator:Q8L440
Uniprot:Q8L440
Length = 374
Score = 163 (62.4 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 31/80 (38%), Positives = 52/80 (65%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
KLF+ GLS+ T + +L+ AF FG++ E K+I ++ S +S+G+ F+ Y + E+A +A
Sbjct: 283 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKE 342
Query: 95 MDGQELNGRNIRVSFANDRP 114
M+G+ +NG I V A +P
Sbjct: 343 MNGKIINGWMIVVDVAKTKP 362
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 166 (63.5 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 34/80 (42%), Positives = 48/80 (60%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQS 93
T +++ DD LKE F FG KV+T+ ESGKS+GFGFV+++ +E A A
Sbjct: 127 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 185
Query: 94 AMDGQELNGRNIRVSFANDR 113
M+G+ELNG+ I V A +
Sbjct: 186 EMNGKELNGKQIYVGRAQKK 205
Score = 141 (54.7 bits), Expect = 9.6e-09, P = 9.6e-09
Identities = 36/99 (36%), Positives = 52/99 (52%)
Query: 12 RQNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERES 71
RQ K + R L+V L G DD L++ FS FG IT AKV+ E
Sbjct: 208 RQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--G 265
Query: 72 GKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 110
G+S+GFGFV + S E A+ A + M+G+ + + + V+ A
Sbjct: 266 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 304
Score = 123 (48.4 bits), Expect = 8.3e-07, P = 8.3e-07
Identities = 27/72 (37%), Positives = 44/72 (61%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95
+F+ L D+ +L + FS FG+I KV+ + E+G S+G+GFV +++ E+A A M
Sbjct: 37 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 94
Query: 96 DGQELNGRNIRV 107
+G LN R + V
Sbjct: 95 NGMLLNDRKVFV 106
>MGI|MGI:1343045 [details] [associations]
symbol:Rbmxl1 "RNA binding motif protein, X linked-like-1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IDA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006376 "mRNA splice site
selection" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP;IDA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISO] [GO:0048026 "positive
regulation of mRNA splicing, via spliceosome" evidence=ISO]
[GO:0051260 "protein homooligomerization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1343045 GO:GO:0008380 GO:GO:0000166
GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682 GO:GO:0006366
GO:GO:0006509 GO:GO:0001047 GO:GO:0005719 GO:GO:0071347
GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026
GO:GO:0000381 GO:GO:0044530 HSSP:Q61474
GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
CTD:494115 EMBL:AF031568 EMBL:AK041927 EMBL:BC011441 EMBL:BC089350
IPI:IPI00663587 RefSeq:NP_001239018.1 RefSeq:NP_033059.2
UniGene:Mm.24718 ProteinModelPortal:Q91VM5 SMR:Q91VM5 IntAct:Q91VM5
STRING:Q91VM5 PhosphoSite:Q91VM5 PaxDb:Q91VM5 PRIDE:Q91VM5
Ensembl:ENSMUST00000049245 GeneID:19656 KEGG:mmu:19656
UCSC:uc009mhz.1 InParanoid:Q91VM5 OMA:ILLMKDR OrthoDB:EOG4001KF
NextBio:296934 Bgee:Q91VM5 Genevestigator:Q91VM5 Uniprot:Q91VM5
Length = 388
Score = 163 (62.4 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 32/76 (42%), Positives = 50/76 (65%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
KLF+GGL+ T++ +L+ F +G I E ++ +RE+ KSRGF FVT++S A A
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 95 MDGQELNGRNIRVSFA 110
M+G+ L+G+ I+V A
Sbjct: 69 MNGKSLDGKAIKVEQA 84
>RGD|1311411 [details] [associations]
symbol:Ppie "peptidylprolyl isomerase E (cyclophilin E)"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003755 "peptidyl-prolyl cis-trans isomerase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0006457 "protein folding" evidence=IEA] [GO:0045070 "positive
regulation of viral genome replication" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 InterPro:IPR020892
Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153 PROSITE:PS00170
PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360 RGD:1311411
GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000065981 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 HOVERGEN:HBG001065 HSSP:P52011
CTD:10450 KO:K09564 EMBL:AY325152 IPI:IPI00382259
RefSeq:NP_001041333.1 UniGene:Rn.18887 SMR:Q7TP89
Ensembl:ENSRNOT00000043799 GeneID:298508 KEGG:rno:298508
UCSC:RGD:1311411 NextBio:643802 Genevestigator:Q7TP89
Uniprot:Q7TP89
Length = 255
Score = 157 (60.3 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 35/82 (42%), Positives = 51/82 (62%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
M+ ++ L+VGGL+ DD L AF FGDIT+ ++ + E+ K RGF FV ++ E A
Sbjct: 1 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDA 60
Query: 89 SSAQSAMDGQELNGRNIRVSFA 110
++A M+ EL GR IRV+ A
Sbjct: 61 AAAIDNMNESELFGRTIRVNLA 82
>WB|WBGene00000889 [details] [associations]
symbol:cyn-13 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003755
"peptidyl-prolyl cis-trans isomerase activity" evidence=IEA]
[GO:0006457 "protein folding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0006915 "apoptotic
process" evidence=IGI;IMP] [GO:0006309 "apoptotic DNA
fragmentation" evidence=IGI;IMP] [GO:0004518 "nuclease activity"
evidence=IDA] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 InterPro:IPR016304 InterPro:IPR020892
Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475 PRINTS:PR00153
PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006309 GO:GO:0004518 eggNOG:COG0724
HOGENOM:HOG000065981 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 HSSP:P52011 KO:K09564 OMA:AFIEFEL
EMBL:AL117204 GeneID:178487 KEGG:cel:CELE_Y116A8C.34 CTD:178487
PIR:T31517 RefSeq:NP_001255925.1 ProteinModelPortal:Q9U2S6
SMR:Q9U2S6 IntAct:Q9U2S6 STRING:Q9U2S6 PaxDb:Q9U2S6 PRIDE:Q9U2S6
EnsemblMetazoa:Y116A8C.34a.1 EnsemblMetazoa:Y116A8C.34a.2
EnsemblMetazoa:Y116A8C.34a.3 UCSC:Y116A8C.34.1 WormBase:Y116A8C.34a
InParanoid:Q9U2S6 NextBio:901332 Uniprot:Q9U2S6
Length = 331
Score = 161 (61.7 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 37/88 (42%), Positives = 49/88 (55%)
Query: 28 FMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNES 87
F + L+VGG + + L AF FGD+ + + ESGK RGFGFV +D E
Sbjct: 5 FPHNRKRTLYVGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAED 64
Query: 88 ASSAQSAMDGQELNGRNIRVSFANDRPP 115
A+ A M+ EL G+ IRV+FA RPP
Sbjct: 65 AAMAIDNMNESELFGKTIRVNFA--RPP 90
>UNIPROTKB|Q9U2S6 [details] [associations]
symbol:cyn-13 "Protein CYN-13, isoform a" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 InterPro:IPR016304 InterPro:IPR020892
Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475 PRINTS:PR00153
PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006309 GO:GO:0004518 eggNOG:COG0724
HOGENOM:HOG000065981 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 HSSP:P52011 KO:K09564 OMA:AFIEFEL
EMBL:AL117204 GeneID:178487 KEGG:cel:CELE_Y116A8C.34 CTD:178487
PIR:T31517 RefSeq:NP_001255925.1 ProteinModelPortal:Q9U2S6
SMR:Q9U2S6 IntAct:Q9U2S6 STRING:Q9U2S6 PaxDb:Q9U2S6 PRIDE:Q9U2S6
EnsemblMetazoa:Y116A8C.34a.1 EnsemblMetazoa:Y116A8C.34a.2
EnsemblMetazoa:Y116A8C.34a.3 UCSC:Y116A8C.34.1 WormBase:Y116A8C.34a
InParanoid:Q9U2S6 NextBio:901332 Uniprot:Q9U2S6
Length = 331
Score = 161 (61.7 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 37/88 (42%), Positives = 49/88 (55%)
Query: 28 FMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNES 87
F + L+VGG + + L AF FGD+ + + ESGK RGFGFV +D E
Sbjct: 5 FPHNRKRTLYVGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAED 64
Query: 88 ASSAQSAMDGQELNGRNIRVSFANDRPP 115
A+ A M+ EL G+ IRV+FA RPP
Sbjct: 65 AAMAIDNMNESELFGKTIRVNFA--RPP 90
>TAIR|locus:2023903 [details] [associations]
symbol:ATE1 "ATPase E1" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 UniGene:At.66943
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AK228412 IPI:IPI00541371
RefSeq:NP_563931.2 ProteinModelPortal:Q0WRA3 SMR:Q0WRA3
STRING:Q0WRA3 PaxDb:Q0WRA3 PRIDE:Q0WRA3 EnsemblPlants:AT1G13690.1
GeneID:837930 KEGG:ath:AT1G13690 TAIR:At1g13690 InParanoid:Q0WRA3
OMA:AQPIWAD PhylomeDB:Q0WRA3 ProtClustDB:CLSN2690943
Genevestigator:Q0WRA3 Uniprot:Q0WRA3
Length = 177
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 36/80 (45%), Positives = 49/80 (61%)
Query: 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASS 90
Q T L+VGGL+ ++S L AF FGDI + K ++ + K R FGFVT+ E AS+
Sbjct: 11 QKNT-LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASA 69
Query: 91 AQSAMDGQELNGRNIRVSFA 110
A MDG EL GR + V++A
Sbjct: 70 AMDNMDGAELYGRVLTVNYA 89
>TAIR|locus:4515103555 [details] [associations]
symbol:AT5G11412 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005576 "extracellular region"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:DQ487706 IPI:IPI00775531 RefSeq:NP_001119208.1
UniGene:At.69225 ProteinModelPortal:Q1G378 SMR:Q1G378 STRING:Q1G378
EnsemblPlants:AT5G11412.1 GeneID:6240527 KEGG:ath:AT5G11412
TAIR:At5g11412 OMA:IDGREAK PhylomeDB:Q1G378 ProtClustDB:CLSN2925591
Genevestigator:Q1G378 Uniprot:Q1G378
Length = 175
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 30/70 (42%), Positives = 45/70 (64%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSA-- 91
TK++VGGL W T + L+ F FGDI ++ +RE+G+S G+GFVT+ ESA+ A
Sbjct: 52 TKIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTFRDAESATRACQ 111
Query: 92 --QSAMDGQE 99
+ +DG+E
Sbjct: 112 NPKPVIDGRE 121
>TAIR|locus:2013016 [details] [associations]
symbol:CSTF64 "cleavage stimulating factor 64"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0031123 "RNA 3'-end
processing" evidence=IMP] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0048589
"developmental growth" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0045892 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0048589 EMBL:AC012654 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GO:GO:0031123 HSSP:P33240 UniGene:At.12026 EMBL:AK229116
IPI:IPI00522487 PIR:E96740 RefSeq:NP_177325.2 UniGene:At.22646
SMR:Q9M9G6 IntAct:Q9M9G6 STRING:Q9M9G6 EnsemblPlants:AT1G71800.1
GeneID:843510 KEGG:ath:AT1G71800 TAIR:At1g71800 InParanoid:Q9M9G6
OMA:NADRNRE ProtClustDB:CLSN2714792 Genevestigator:Q9M9G6
Uniprot:Q9M9G6
Length = 461
Score = 164 (62.8 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 32/86 (37%), Positives = 52/86 (60%)
Query: 30 SQSQTK-LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
S SQ + +FVG + + + L+E G + +++T+RE+GK +G+GF Y E+A
Sbjct: 4 SSSQRRCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETA 63
Query: 89 SSAQSAMDGQELNGRNIRVSFA-NDR 113
SA+ + E+NGR +RV FA ND+
Sbjct: 64 LSARRNLQSYEINGRQLRVDFAENDK 89
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 162 (62.1 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 33/88 (37%), Positives = 53/88 (60%)
Query: 26 VRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSN 85
+R + T +++ DD LK+ FS +G KV+T+ SGKS+GFGFV++DS+
Sbjct: 182 LRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSH 240
Query: 86 ESASSAQSAMDGQELNGRNIRVSFANDR 113
E+A A M+G+++NG+ I V A +
Sbjct: 241 EAAKKAVEEMNGRDINGQLIFVGRAQKK 268
Score = 135 (52.6 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 27/76 (35%), Positives = 46/76 (60%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
KL++ L DD L+ FS+FG I+ KV+ +E G+S+GFG + + S E A+ A +
Sbjct: 294 KLYIKNLDDTIDDEKLRNEFSSFGSISRVKVM--QEEGQSKGFGLICFSSPEDATKAMTE 351
Query: 95 MDGQELNGRNIRVSFA 110
M+G+ L + + ++ A
Sbjct: 352 MNGRILGSKPLSIALA 367
Score = 101 (40.6 bits), Expect = 0.00010, P = 0.00010
Identities = 26/77 (33%), Positives = 43/77 (55%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95
+F+ L D+ +L E FS FG I +KV+++ + G S+G+ FV + + +A A M
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSD-DQG-SKGYAFVHFQNQSAADRAIEEM 157
Query: 96 DGQELNGRNIRVS-FAN 111
+G+ L G + V F N
Sbjct: 158 NGKLLKGCKVFVGRFKN 174
>UNIPROTKB|Q9DDU8 [details] [associations]
symbol:TRA2B "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0000398 HSSP:Q9V535 GO:GO:0048026 GO:GO:0000381
HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 KO:K12897
OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 OMA:YDDREYY
EMBL:AADN02024287 EMBL:AF282244 IPI:IPI00571265 RefSeq:NP_990009.1
UniGene:Gga.4158 SMR:Q9DDU8 Ensembl:ENSGALT00000010555
GeneID:395403 KEGG:gga:395403 InParanoid:Q9DDU8 NextBio:20815487
Uniprot:Q9DDU8
Length = 289
Score = 159 (61.0 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 32/80 (40%), Positives = 50/80 (62%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95
L V GLS T + L+E FS +G I + ++ +++S +SRGF FV +++ E A A+
Sbjct: 120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVEDAKEAKERA 179
Query: 96 DGQELNGRNIRVSFANDRPP 115
+G EL+GR IRV F+ + P
Sbjct: 180 NGMELDGRRIRVDFSITKRP 199
>UNIPROTKB|Q800W4 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0042036 "negative regulation of cytokine biosynthetic process"
evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
Length = 372
Score = 162 (62.1 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 33/80 (41%), Positives = 51/80 (63%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95
+FVG LS +K AF+ FG I++A+V+ + +GKS+G+GFV++ + A +A M
Sbjct: 97 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Query: 96 DGQELNGRNIRVSFANDRPP 115
GQ L GR IR ++A +PP
Sbjct: 157 GGQWLGGRQIRTNWATRKPP 176
Score = 109 (43.4 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 24/91 (26%), Positives = 49/91 (53%)
Query: 24 NAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYD 83
+ V S S ++ GG++ G + +++ FS FG I E +V ++ G+ FV ++
Sbjct: 193 DVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDK------GYSFVRFN 246
Query: 84 SNESASSAQSAMDGQELNGRNIRVSFANDRP 114
S+ESA+ A +++G + G ++ + + P
Sbjct: 247 SHESAAHAIVSVNGTTIEGHVVKCYWGKETP 277
Score = 94 (38.1 bits), Expect = 0.00059, P = 0.00059
Identities = 22/75 (29%), Positives = 44/75 (58%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95
L+VG LS ++ + + FS G K+I + +G + FV + + A+SA +AM
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDT-AGNDP-YCFVEFYEHRHAASALAAM 66
Query: 96 DGQELNGRNIRVSFA 110
+G+++ G+ ++V++A
Sbjct: 67 NGRKIMGKEVKVNWA 81
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 166 (63.5 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 34/80 (42%), Positives = 48/80 (60%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQS 93
T +++ DD LKE F FG KV+T+ ESGKS+GFGFV+++ +E A A
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 94 AMDGQELNGRNIRVSFANDR 113
M+G+ELNG+ I V A +
Sbjct: 250 EMNGKELNGKQIYVGRAQKK 269
Score = 141 (54.7 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 36/99 (36%), Positives = 52/99 (52%)
Query: 12 RQNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERES 71
RQ K + R L+V L G DD L++ FS FG IT AKV+ E
Sbjct: 272 RQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--G 329
Query: 72 GKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 110
G+S+GFGFV + S E A+ A + M+G+ + + + V+ A
Sbjct: 330 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 123 (48.4 bits), Expect = 9.6e-07, P = 9.6e-07
Identities = 27/72 (37%), Positives = 44/72 (61%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95
+F+ L D+ +L + FS FG+I KV+ + E+G S+G+GFV +++ E+A A M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 158
Query: 96 DGQELNGRNIRV 107
+G LN R + V
Sbjct: 159 NGMLLNDRKVFV 170
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 166 (63.5 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 34/80 (42%), Positives = 48/80 (60%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQS 93
T +++ DD LKE F FG KV+T+ ESGKS+GFGFV+++ +E A A
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 94 AMDGQELNGRNIRVSFANDR 113
M+G+ELNG+ I V A +
Sbjct: 250 EMNGKELNGKQIYVGRAQKK 269
Score = 141 (54.7 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 36/99 (36%), Positives = 52/99 (52%)
Query: 12 RQNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERES 71
RQ K + R L+V L G DD L++ FS FG IT AKV+ E
Sbjct: 272 RQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--G 329
Query: 72 GKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 110
G+S+GFGFV + S E A+ A + M+G+ + + + V+ A
Sbjct: 330 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 123 (48.4 bits), Expect = 9.6e-07, P = 9.6e-07
Identities = 27/72 (37%), Positives = 44/72 (61%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95
+F+ L D+ +L + FS FG+I KV+ + E+G S+G+GFV +++ E+A A M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 158
Query: 96 DGQELNGRNIRV 107
+G LN R + V
Sbjct: 159 NGMLLNDRKVFV 170
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 162 (62.1 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 33/80 (41%), Positives = 51/80 (63%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95
+FVG LS +K AF+ FG I++A+V+ + +GKS+G+GFV++ + A +A M
Sbjct: 97 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Query: 96 DGQELNGRNIRVSFANDRPP 115
GQ L GR IR ++A +PP
Sbjct: 157 GGQWLGGRQIRTNWATRKPP 176
Score = 96 (38.9 bits), Expect = 0.00036, P = 0.00036
Identities = 20/77 (25%), Positives = 42/77 (54%)
Query: 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESAS 89
S ++ GG++ G + +++ FS FG I E +V ++ G+ F+ + S+ESA+
Sbjct: 199 SPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDK------GYSFIRFSSHESAA 252
Query: 90 SAQSAMDGQELNGRNIR 106
A +++G + G ++
Sbjct: 253 HAIVSVNGTTIEGHVVK 269
Score = 93 (37.8 bits), Expect = 0.00077, P = 0.00077
Identities = 21/75 (28%), Positives = 44/75 (58%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95
L+VG LS ++ + + FS G K+I + +G + FV + + A++A +AM
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDT-AGNDP-YCFVEFHEHRHAAAALAAM 66
Query: 96 DGQELNGRNIRVSFA 110
+G+++ G+ ++V++A
Sbjct: 67 NGRKIMGKEVKVNWA 81
>WB|WBGene00012904 [details] [associations]
symbol:tiar-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HSSP:P11940 EMBL:AL110485 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 RefSeq:NP_496718.1 UniGene:Cel.14057
ProteinModelPortal:Q9U2F5 SMR:Q9U2F5 IntAct:Q9U2F5 PaxDb:Q9U2F5
EnsemblMetazoa:Y46G5A.13 GeneID:174909 KEGG:cel:CELE_Y46G5A.13
UCSC:Y46G5A.13 CTD:174909 WormBase:Y46G5A.13 InParanoid:Q9U2F5
NextBio:886000 Uniprot:Q9U2F5
Length = 434
Score = 163 (62.4 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 32/79 (40%), Positives = 48/79 (60%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95
+FVG L D + L+EAF FG+++EAK+I + + K +G+GFV+Y E A A M
Sbjct: 134 VFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEM 193
Query: 96 DGQELNGRNIRVSFANDRP 114
+G L R IR ++A +P
Sbjct: 194 NGAWLGRRTIRTNWATRKP 212
Score = 94 (38.1 bits), Expect = 0.00074, P = 0.00074
Identities = 21/76 (27%), Positives = 41/76 (53%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQS 93
T ++VG ++ + ++ AF FG I E + K +G+ FV +++ ESA+ A
Sbjct: 256 TSVYVGNIA-NLGEDEIRRAFDRFGPINEVRTF------KIQGYAFVKFETKESAARAIV 308
Query: 94 AMDGQELNGRNIRVSF 109
M+ ++ G+ +R S+
Sbjct: 309 QMNNADIGGQIVRCSW 324
>UNIPROTKB|H0YCC8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000474378 Uniprot:H0YCC8
Length = 197
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 32/80 (40%), Positives = 49/80 (61%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQS 93
T +++ DD SLKE FS FG KV+ + +GKS+GFGFV+Y+ +E A+ A
Sbjct: 104 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVE 162
Query: 94 AMDGQELNGRNIRVSFANDR 113
M+G+E++G+ I V A +
Sbjct: 163 EMNGKEISGKIIFVGRAQKK 182
>UNIPROTKB|D4A964 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1595845 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00949247 Ensembl:ENSRNOT00000066938 Uniprot:D4A964
Length = 368
Score = 161 (61.7 bits), Expect = 2.9e-11, P = 2.9e-11
Identities = 33/80 (41%), Positives = 51/80 (63%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95
+FVG LS +K AF+ FG I++A+V+ + +GKS+G+GFV++ + A +A M
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 96 DGQELNGRNIRVSFANDRPP 115
GQ L GR IR ++A +PP
Sbjct: 176 GGQWLGGRQIRTNWATRKPP 195
Score = 109 (43.4 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 25/89 (28%), Positives = 49/89 (55%)
Query: 29 MSQSQTK---LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSN 85
++QS K ++ GG++ G D +++ FS FG I E +V E+ G+ FV + ++
Sbjct: 214 VNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTH 267
Query: 86 ESASSAQSAMDGQELNGRNIRVSFANDRP 114
ESA+ A +++G + G ++ + + P
Sbjct: 268 ESAAHAIVSVNGTTIEGHVVKCYWGKESP 296
>UNIPROTKB|F1LQ36 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1595845 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
GO:GO:0017145 GeneTree:ENSGT00680000099967 IPI:IPI00555194
Ensembl:ENSRNOT00000027463 Uniprot:F1LQ36
Length = 371
Score = 161 (61.7 bits), Expect = 2.9e-11, P = 2.9e-11
Identities = 33/80 (41%), Positives = 51/80 (63%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95
+FVG LS +K AF+ FG I++A+V+ + +GKS+G+GFV++ + A +A M
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 96 DGQELNGRNIRVSFANDRPP 115
GQ L GR IR ++A +PP
Sbjct: 176 GGQWLGGRQIRTNWATRKPP 195
Score = 109 (43.4 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 25/89 (28%), Positives = 49/89 (55%)
Query: 29 MSQSQTK---LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSN 85
++QS K ++ GG++ G D +++ FS FG I E +V E+ G+ FV + ++
Sbjct: 214 VNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTH 267
Query: 86 ESASSAQSAMDGQELNGRNIRVSFANDRP 114
ESA+ A +++G + G ++ + + P
Sbjct: 268 ESAAHAIVSVNGTTIEGHVVKCYWGKESP 296
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 165 (63.1 bits), Expect = 2.9e-11, P = 2.9e-11
Identities = 35/80 (43%), Positives = 49/80 (61%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQS 93
T +++ DD L+E FS FG+ KV+ + +SG+SRGFGFV Y ++E A A S
Sbjct: 191 TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVS 249
Query: 94 AMDGQELNGRNIRVSFANDR 113
M+G+E+NGR I V A R
Sbjct: 250 EMNGKEVNGRMIYVGRAQKR 269
Score = 144 (55.7 bits), Expect = 5.3e-09, P = 5.3e-09
Identities = 38/111 (34%), Positives = 58/111 (52%)
Query: 1 MAFCGKLGMLV-RQNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGD 59
M + G+ + RQ+ K I R L+V L G DD L++ F +G
Sbjct: 260 MIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGT 319
Query: 60 ITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 110
IT AKV+TE G S+GFGFV + S E A+ A + M+G+ ++ + + V+ A
Sbjct: 320 ITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
Score = 128 (50.1 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 29/78 (37%), Positives = 46/78 (58%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95
+F+ L D+ +L + FS FG+I KV+ + E G SRG+GFV ++++E+A+ A M
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCD-EHG-SRGYGFVHFETHEAANRAIQTM 158
Query: 96 DGQELNGRNIRVSFANDR 113
+G LN R + V R
Sbjct: 159 NGMLLNDRKVFVGHFKSR 176
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 161 (61.7 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 33/80 (41%), Positives = 51/80 (63%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95
+FVG LS +K AF+ FG I++A+V+ + +GKS+G+GFV++ + A +A M
Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158
Query: 96 DGQELNGRNIRVSFANDRPP 115
GQ L GR IR ++A +PP
Sbjct: 159 GGQWLGGRQIRTNWATRKPP 178
Score = 113 (44.8 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 31/107 (28%), Positives = 58/107 (54%)
Query: 17 APKASLIN---AVRF---MSQSQTK---LFVGGLSWGTDDSSLKEAFSNFGDITEAKVIT 67
APK++ N +RF ++QS K ++ GG++ G D +++ FS FG I E +V
Sbjct: 179 APKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP 238
Query: 68 ERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRP 114
E+ G+ FV + ++ESA+ A +++G + G ++ + + P
Sbjct: 239 EK------GYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESP 279
Score = 102 (41.0 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 25/80 (31%), Positives = 46/80 (57%)
Query: 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASS 90
Q +T L+VG LS + + + FS G K+ITE S + FV + + A++
Sbjct: 7 QPRT-LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAAA 63
Query: 91 AQSAMDGQELNGRNIRVSFA 110
A +AM+G+++ G+ ++V++A
Sbjct: 64 ALAAMNGRKILGKEVKVNWA 83
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 161 (61.7 bits), Expect = 3.1e-11, P = 3.1e-11
Identities = 33/80 (41%), Positives = 51/80 (63%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95
+FVG LS +K AF+ FG I++A+V+ + +GKS+G+GFV++ + A +A M
Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158
Query: 96 DGQELNGRNIRVSFANDRPP 115
GQ L GR IR ++A +PP
Sbjct: 159 GGQWLGGRQIRTNWATRKPP 178
Score = 113 (44.8 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 31/107 (28%), Positives = 58/107 (54%)
Query: 17 APKASLIN---AVRF---MSQSQTK---LFVGGLSWGTDDSSLKEAFSNFGDITEAKVIT 67
APK++ N +RF ++QS K ++ GG++ G D +++ FS FG I E +V
Sbjct: 179 APKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP 238
Query: 68 ERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRP 114
E+ G+ FV + ++ESA+ A +++G + G ++ + + P
Sbjct: 239 EK------GYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESP 279
Score = 102 (41.0 bits), Expect = 8.3e-05, P = 8.3e-05
Identities = 25/80 (31%), Positives = 46/80 (57%)
Query: 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASS 90
Q +T L+VG LS + + + FS G K+ITE S + FV + + A++
Sbjct: 7 QPRT-LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAAA 63
Query: 91 AQSAMDGQELNGRNIRVSFA 110
A +AM+G+++ G+ ++V++A
Sbjct: 64 ALAAMNGRKILGKEVKVNWA 83
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 162 (62.1 bits), Expect = 3.1e-11, P = 3.1e-11
Identities = 33/88 (37%), Positives = 53/88 (60%)
Query: 26 VRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSN 85
+R + T +++ DD LK+ FS +G KV+T+ SGKS+GFGFV++DS+
Sbjct: 240 LRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSH 298
Query: 86 ESASSAQSAMDGQELNGRNIRVSFANDR 113
E+A A M+G+++NG+ I V A +
Sbjct: 299 EAAKKAVEEMNGRDINGQLIFVGRAQKK 326
Score = 135 (52.6 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 27/76 (35%), Positives = 46/76 (60%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
KL++ L DD L+ FS+FG I+ KV+ +E G+S+GFG + + S E A+ A +
Sbjct: 352 KLYIKNLDDTIDDEKLRNEFSSFGSISRVKVM--QEEGQSKGFGLICFSSPEDATKAMTE 409
Query: 95 MDGQELNGRNIRVSFA 110
M+G+ L + + ++ A
Sbjct: 410 MNGRILGSKPLSIALA 425
Score = 101 (40.6 bits), Expect = 0.00013, P = 0.00013
Identities = 26/77 (33%), Positives = 43/77 (55%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95
+F+ L D+ +L E FS FG I +KV+++ + G S+G+ FV + + +A A M
Sbjct: 158 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSD-DQG-SKGYAFVHFQNQSAADRAIEEM 215
Query: 96 DGQELNGRNIRVS-FAN 111
+G+ L G + V F N
Sbjct: 216 NGKLLKGCKVFVGRFKN 232
>UNIPROTKB|F1NY49 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00575679 Ensembl:ENSGALT00000015349 ArrayExpress:F1NY49
Uniprot:F1NY49
Length = 388
Score = 161 (61.7 bits), Expect = 3.3e-11, P = 3.3e-11
Identities = 33/80 (41%), Positives = 51/80 (63%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95
+FVG LS +K AF+ FG I++A+V+ + +GKS+G+GFV++ + A +A M
Sbjct: 115 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 174
Query: 96 DGQELNGRNIRVSFANDRPP 115
GQ L GR IR ++A +PP
Sbjct: 175 GGQWLGGRQIRTNWATRKPP 194
Score = 113 (44.8 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 31/107 (28%), Positives = 58/107 (54%)
Query: 17 APKASLIN---AVRF---MSQSQTK---LFVGGLSWGTDDSSLKEAFSNFGDITEAKVIT 67
APK++ N +RF ++QS K ++ GG++ G D +++ FS FG I E +V
Sbjct: 195 APKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP 254
Query: 68 ERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRP 114
E+ G+ FV + ++ESA+ A +++G + G ++ + + P
Sbjct: 255 EK------GYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESP 295
>UNIPROTKB|F1NS94 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00681845 Ensembl:ENSGALT00000029737 ArrayExpress:F1NS94
Uniprot:F1NS94
Length = 389
Score = 161 (61.7 bits), Expect = 3.3e-11, P = 3.3e-11
Identities = 33/80 (41%), Positives = 51/80 (63%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95
+FVG LS +K AF+ FG I++A+V+ + +GKS+G+GFV++ + A +A M
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 96 DGQELNGRNIRVSFANDRPP 115
GQ L GR IR ++A +PP
Sbjct: 176 GGQWLGGRQIRTNWATRKPP 195
Score = 113 (44.8 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 31/107 (28%), Positives = 58/107 (54%)
Query: 17 APKASLIN---AVRF---MSQSQTK---LFVGGLSWGTDDSSLKEAFSNFGDITEAKVIT 67
APK++ N +RF ++QS K ++ GG++ G D +++ FS FG I E +V
Sbjct: 196 APKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP 255
Query: 68 ERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRP 114
E+ G+ FV + ++ESA+ A +++G + G ++ + + P
Sbjct: 256 EK------GYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESP 296
>UNIPROTKB|E2RA41 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
Length = 392
Score = 161 (61.7 bits), Expect = 3.3e-11, P = 3.3e-11
Identities = 33/80 (41%), Positives = 51/80 (63%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95
+FVG LS +K AF+ FG I++A+V+ + +GKS+G+GFV++ + A +A M
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 96 DGQELNGRNIRVSFANDRPP 115
GQ L GR IR ++A +PP
Sbjct: 176 GGQWLGGRQIRTNWATRKPP 195
Score = 113 (44.8 bits), Expect = 5.6e-06, P = 5.6e-06
Identities = 31/107 (28%), Positives = 58/107 (54%)
Query: 17 APKASLIN---AVRF---MSQSQTK---LFVGGLSWGTDDSSLKEAFSNFGDITEAKVIT 67
APK++ N +RF ++QS K ++ GG++ G D +++ FS FG I E +V
Sbjct: 196 APKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP 255
Query: 68 ERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRP 114
E+ G+ FV + ++ESA+ A +++G + G ++ + + P
Sbjct: 256 EK------GYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESP 296
>UNIPROTKB|F2Z5F9 [details] [associations]
symbol:LOC100736782 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:CT826370 EMBL:CT867965 RefSeq:XP_003133244.1 UniGene:Ssc.56271
ProteinModelPortal:F2Z5F9 SMR:F2Z5F9 Ensembl:ENSSSCT00000011686
GeneID:100158186 KEGG:ssc:100158186 Uniprot:F2Z5F9
Length = 392
Score = 161 (61.7 bits), Expect = 3.3e-11, P = 3.3e-11
Identities = 33/80 (41%), Positives = 51/80 (63%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95
+FVG LS +K AF+ FG I++A+V+ + +GKS+G+GFV++ + A +A M
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 96 DGQELNGRNIRVSFANDRPP 115
GQ L GR IR ++A +PP
Sbjct: 176 GGQWLGGRQIRTNWATRKPP 195
Score = 113 (44.8 bits), Expect = 5.6e-06, P = 5.6e-06
Identities = 31/107 (28%), Positives = 58/107 (54%)
Query: 17 APKASLIN---AVRF---MSQSQTK---LFVGGLSWGTDDSSLKEAFSNFGDITEAKVIT 67
APK++ N +RF ++QS K ++ GG++ G D +++ FS FG I E +V
Sbjct: 196 APKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP 255
Query: 68 ERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRP 114
E+ G+ FV + ++ESA+ A +++G + G ++ + + P
Sbjct: 256 EK------GYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESP 296
>MGI|MGI:107913 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0017145 "stem cell
division" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:107913
GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 ChiTaRS:TIAL1
EMBL:U55861 IPI:IPI00108085 PIR:S72436 RefSeq:NP_033409.1
UniGene:Mm.242072 ProteinModelPortal:P70318 SMR:P70318
IntAct:P70318 STRING:P70318 PhosphoSite:P70318 PaxDb:P70318
PRIDE:P70318 Ensembl:ENSMUST00000106226 GeneID:21843 KEGG:mmu:21843
InParanoid:P70318 OMA:NGSKQLR NextBio:301310 Bgee:P70318
Genevestigator:P70318 GermOnline:ENSMUSG00000030846 Uniprot:P70318
Length = 392
Score = 161 (61.7 bits), Expect = 3.3e-11, P = 3.3e-11
Identities = 33/80 (41%), Positives = 51/80 (63%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95
+FVG LS +K AF+ FG I++A+V+ + +GKS+G+GFV++ + A +A M
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 96 DGQELNGRNIRVSFANDRPP 115
GQ L GR IR ++A +PP
Sbjct: 176 GGQWLGGRQIRTNWATRKPP 195
Score = 109 (43.4 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 25/89 (28%), Positives = 49/89 (55%)
Query: 29 MSQSQTK---LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSN 85
++QS K ++ GG++ G D +++ FS FG I E +V E+ G+ FV + ++
Sbjct: 214 VNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTH 267
Query: 86 ESASSAQSAMDGQELNGRNIRVSFANDRP 114
ESA+ A +++G + G ++ + + P
Sbjct: 268 ESAAHAIVSVNGTTIEGHVVKCYWGKESP 296
>RGD|1595845 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0007281 "germ cell development" evidence=ISO] [GO:0008284
"positive regulation of cell proliferation" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0017145 "stem cell
division" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1595845
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 EMBL:CH473956
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 IPI:IPI00555194
EMBL:BC091409 RefSeq:NP_001013211.1 UniGene:Rn.162475 SMR:Q5BJN3
STRING:Q5BJN3 GeneID:361655 KEGG:rno:361655 UCSC:RGD:1595845
InParanoid:Q5BJN3 NextBio:677112 Genevestigator:Q5BJN3
Uniprot:Q5BJN3
Length = 392
Score = 161 (61.7 bits), Expect = 3.3e-11, P = 3.3e-11
Identities = 33/80 (41%), Positives = 51/80 (63%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95
+FVG LS +K AF+ FG I++A+V+ + +GKS+G+GFV++ + A +A M
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 96 DGQELNGRNIRVSFANDRPP 115
GQ L GR IR ++A +PP
Sbjct: 176 GGQWLGGRQIRTNWATRKPP 195
Score = 109 (43.4 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 25/89 (28%), Positives = 49/89 (55%)
Query: 29 MSQSQTK---LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSN 85
++QS K ++ GG++ G D +++ FS FG I E +V E+ G+ FV + ++
Sbjct: 214 VNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTH 267
Query: 86 ESASSAQSAMDGQELNGRNIRVSFANDRP 114
ESA+ A +++G + G ++ + + P
Sbjct: 268 ESAAHAIVSVNGTTIEGHVVKCYWGKESP 296
>TAIR|locus:2179624 [details] [associations]
symbol:AT5G19030 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00544212 RefSeq:NP_197404.2
UniGene:At.31343 ProteinModelPortal:F4JZK9 SMR:F4JZK9
EnsemblPlants:AT5G19030.1 GeneID:832022 KEGG:ath:AT5G19030
OMA:RTISCVA PhylomeDB:F4JZK9 Uniprot:F4JZK9
Length = 172
Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 32/81 (39%), Positives = 47/81 (58%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
+ S + LFV G S + LK+ FS FG +T K+I + +S G+G+V ++S E A
Sbjct: 72 LPSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDA 131
Query: 89 SSAQSAMDGQELNGRNIRVSF 109
SA AM+G+ +GR I V F
Sbjct: 132 QSAVEAMNGKFFDGRFILVKF 152
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 163 (62.4 bits), Expect = 4.4e-11, P = 4.4e-11
Identities = 33/80 (41%), Positives = 48/80 (60%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQS 93
T +++ DD LK+ F FG KV+T+ ESGKS+GFGFV+++ +E A A
Sbjct: 146 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 204
Query: 94 AMDGQELNGRNIRVSFANDR 113
M+G+ELNG+ I V A +
Sbjct: 205 EMNGKELNGKQIYVGRAQKK 224
Score = 141 (54.7 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 36/99 (36%), Positives = 52/99 (52%)
Query: 12 RQNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERES 71
RQ K + R L+V L G DD L++ FS FG IT AKV+ E
Sbjct: 227 RQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--G 284
Query: 72 GKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 110
G+S+GFGFV + S E A+ A + M+G+ + + + V+ A
Sbjct: 285 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 323
Score = 123 (48.4 bits), Expect = 8.7e-07, P = 8.7e-07
Identities = 27/72 (37%), Positives = 44/72 (61%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95
+F+ L D+ +L + FS FG+I KV+ + E+G S+G+GFV +++ E+A A M
Sbjct: 56 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 113
Query: 96 DGQELNGRNIRV 107
+G LN R + V
Sbjct: 114 NGMLLNDRKVFV 125
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 163 (62.4 bits), Expect = 4.4e-11, P = 4.4e-11
Identities = 33/80 (41%), Positives = 48/80 (60%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQS 93
T +++ DD LK+ F FG KV+T+ ESGKS+GFGFV+++ +E A A
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 94 AMDGQELNGRNIRVSFANDR 113
M+G+ELNG+ I V A +
Sbjct: 250 EMNGKELNGKQIYVGRAQKK 269
Score = 123 (48.4 bits), Expect = 8.8e-07, P = 8.8e-07
Identities = 27/72 (37%), Positives = 44/72 (61%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95
+F+ L D+ +L + FS FG+I KV+ + E+G S+G+GFV +++ E+A A M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 158
Query: 96 DGQELNGRNIRV 107
+G LN R + V
Sbjct: 159 NGMLLNDRKVFV 170
Score = 114 (45.2 bits), Expect = 8.1e-06, P = 8.1e-06
Identities = 29/82 (35%), Positives = 41/82 (50%)
Query: 12 RQNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERES 71
RQ K + R L+V L G DD L++ FS FG IT AKV+ E
Sbjct: 272 RQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--G 329
Query: 72 GKSRGFGFVTYDSNESASSAQS 93
G+S+GFGFV + + +S ++
Sbjct: 330 GRSKGFGFVCFSYMQRMASVRA 351
>UNIPROTKB|A4FV72 [details] [associations]
symbol:PPIE "Peptidyl-prolyl cis-trans isomerase E"
species:9913 "Bos taurus" [GO:0003755 "peptidyl-prolyl cis-trans
isomerase activity" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0006457 "protein folding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002130 InterPro:IPR012677
InterPro:IPR016304 InterPro:IPR020892 Pfam:PF00076 Pfam:PF00160
PIRSF:PIRSF001475 PRINTS:PR00153 PROSITE:PS00170 PROSITE:PS50072
PROSITE:PS50102 SMART:SM00360 GO:GO:0006457 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
HOVERGEN:HBG001065 EMBL:BC123818 IPI:IPI00686175
RefSeq:NP_001091630.1 UniGene:Bt.21742 ProteinModelPortal:A4FV72
SMR:A4FV72 PRIDE:A4FV72 GeneID:787681 KEGG:bta:787681 CTD:10450
KO:K09564 NextBio:20928622 Uniprot:A4FV72
Length = 301
Score = 157 (60.3 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 35/82 (42%), Positives = 51/82 (62%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
M+ ++ L+VGGL+ DD L AF FGDIT+ ++ + E+ K RGF FV ++ E A
Sbjct: 1 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDA 60
Query: 89 SSAQSAMDGQELNGRNIRVSFA 110
++A M+ EL GR IRV+ A
Sbjct: 61 AAAIDNMNESELFGRTIRVNLA 82
>UNIPROTKB|G3MZS9 [details] [associations]
symbol:PPIE "Peptidyl-prolyl cis-trans isomerase E"
species:9913 "Bos taurus" [GO:0006457 "protein folding"
evidence=IEA] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 InterPro:IPR016304
InterPro:IPR020892 Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475
PRINTS:PR00153 PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 UniGene:Bt.21742 OMA:AFIEFEL
EMBL:DAAA02009142 Ensembl:ENSBTAT00000063035 Uniprot:G3MZS9
Length = 301
Score = 157 (60.3 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 35/82 (42%), Positives = 51/82 (62%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
M+ ++ L+VGGL+ DD L AF FGDIT+ ++ + E+ K RGF FV ++ E A
Sbjct: 1 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDA 60
Query: 89 SSAQSAMDGQELNGRNIRVSFA 110
++A M+ EL GR IRV+ A
Sbjct: 61 AAAIDNMNESELFGRTIRVNLA 82
>UNIPROTKB|E2QVB5 [details] [associations]
symbol:PPIE "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006457 "protein folding" evidence=IEA]
[GO:0003755 "peptidyl-prolyl cis-trans isomerase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 InterPro:IPR016304
InterPro:IPR020892 Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475
PRINTS:PR00153 PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 CTD:10450 KO:K09564 EMBL:AAEX03009569
EMBL:AAEX03009570 RefSeq:XP_848739.1 Ensembl:ENSCAFT00000004892
GeneID:607232 KEGG:cfa:607232 NextBio:20892973 Uniprot:E2QVB5
Length = 301
Score = 157 (60.3 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 35/82 (42%), Positives = 51/82 (62%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
M+ ++ L+VGGL+ DD L AF FGDIT+ ++ + E+ K RGF FV ++ E A
Sbjct: 1 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDA 60
Query: 89 SSAQSAMDGQELNGRNIRVSFA 110
++A M+ EL GR IRV+ A
Sbjct: 61 AAAIDNMNESELFGRTIRVNLA 82
>UNIPROTKB|Q9UNP9 [details] [associations]
symbol:PPIE "Peptidyl-prolyl cis-trans isomerase E"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006457 "protein folding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0045070 "positive regulation of viral genome
replication" evidence=IMP] [GO:0016018 "cyclosporin A binding"
evidence=TAS] [GO:0000413 "protein peptidyl-prolyl isomerization"
evidence=TAS] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 InterPro:IPR016304 InterPro:IPR020892
Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475 PRINTS:PR00153
PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0006457 GO:GO:0006355 GO:GO:0000166 EMBL:CH471059
EMBL:AL035404 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
GO:GO:0071013 EMBL:AL033527 eggNOG:COG0724 GO:GO:0003755
SUPFAM:SSF50891 GO:GO:0016018 PDB:2KU7 PDBsum:2KU7
HOVERGEN:HBG001065 CTD:10450 KO:K09564 EMBL:AF104012 EMBL:AF104013
EMBL:AF042385 EMBL:AF042386 EMBL:AK313666 EMBL:AL049824
EMBL:BC004898 EMBL:BC008451 EMBL:BC107736 IPI:IPI00009316
IPI:IPI00220188 PIR:S66681 RefSeq:NP_006103.1 RefSeq:NP_982281.1
UniGene:Hs.524690 PDB:1ZMF PDB:2CQB PDB:2KYX PDB:2R99 PDB:3LPY
PDB:3MDF PDB:3UCH PDBsum:1ZMF PDBsum:2CQB PDBsum:2KYX PDBsum:2R99
PDBsum:3LPY PDBsum:3MDF PDBsum:3UCH ProteinModelPortal:Q9UNP9
SMR:Q9UNP9 IntAct:Q9UNP9 STRING:Q9UNP9 PhosphoSite:Q9UNP9
DMDM:13124097 PaxDb:Q9UNP9 PRIDE:Q9UNP9 DNASU:10450
Ensembl:ENST00000324379 Ensembl:ENST00000356511 GeneID:10450
KEGG:hsa:10450 UCSC:uc001cds.2 UCSC:uc001cdv.3
GeneCards:GC01P040157 HGNC:HGNC:9258 HPA:HPA020131 MIM:602435
neXtProt:NX_Q9UNP9 PharmGKB:PA33583 OrthoDB:EOG4STS55
PhylomeDB:Q9UNP9 ChiTaRS:PPIE EvolutionaryTrace:Q9UNP9
GenomeRNAi:10450 NextBio:39609 ArrayExpress:Q9UNP9 Bgee:Q9UNP9
CleanEx:HS_PPIE Genevestigator:Q9UNP9 GermOnline:ENSG00000084072
Uniprot:Q9UNP9
Length = 301
Score = 157 (60.3 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 35/82 (42%), Positives = 51/82 (62%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
M+ ++ L+VGGL+ DD L AF FGDIT+ ++ + E+ K RGF FV ++ E A
Sbjct: 1 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDA 60
Query: 89 SSAQSAMDGQELNGRNIRVSFA 110
++A M+ EL GR IRV+ A
Sbjct: 61 AAAIDNMNESELFGRTIRVNLA 82
>UNIPROTKB|F1SV03 [details] [associations]
symbol:PPIE "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006457 "protein folding" evidence=IEA] [GO:0003755
"peptidyl-prolyl cis-trans isomerase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 InterPro:IPR016304 InterPro:IPR020892
Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475 PRINTS:PR00153
PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 KO:K09564 OMA:AFIEFEL EMBL:CR956427
RefSeq:XP_003127865.1 Ensembl:ENSSSCT00000004060 GeneID:100516562
KEGG:ssc:100516562 Uniprot:F1SV03
Length = 301
Score = 157 (60.3 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 35/82 (42%), Positives = 51/82 (62%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
M+ ++ L+VGGL+ DD L AF FGDIT+ ++ + E+ K RGF FV ++ E A
Sbjct: 1 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDA 60
Query: 89 SSAQSAMDGQELNGRNIRVSFA 110
++A M+ EL GR IRV+ A
Sbjct: 61 AAAIDNMNESELFGRTIRVNLA 82
>MGI|MGI:1917118 [details] [associations]
symbol:Ppie "peptidylprolyl isomerase E (cyclophilin E)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003755
"peptidyl-prolyl cis-trans isomerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006457 "protein folding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016853 "isomerase
activity" evidence=IEA] [GO:0045070 "positive regulation of viral
genome replication" evidence=ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 InterPro:IPR016304 InterPro:IPR020892
Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475 PRINTS:PR00153
PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1917118 GO:GO:0006457 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
eggNOG:COG0724 HOGENOM:HOG000065981 GO:GO:0003755 SUPFAM:SSF50891
GO:GO:0000413 GeneTree:ENSGT00690000101651 HOVERGEN:HBG001065
CTD:10450 KO:K09564 OMA:AFIEFEL OrthoDB:EOG4STS55 EMBL:AK008177
EMBL:BC045154 EMBL:AF182825 IPI:IPI00111343 RefSeq:NP_062362.1
UniGene:Mm.126873 ProteinModelPortal:Q9QZH3 SMR:Q9QZH3
STRING:Q9QZH3 PhosphoSite:Q9QZH3 REPRODUCTION-2DPAGE:IPI00111343
PaxDb:Q9QZH3 PRIDE:Q9QZH3 Ensembl:ENSMUST00000030404 GeneID:56031
KEGG:mmu:56031 UCSC:uc008uow.1 InParanoid:Q9QZH3 NextBio:311788
Bgee:Q9QZH3 CleanEx:MM_PPIE Genevestigator:Q9QZH3
GermOnline:ENSMUSG00000028651 Uniprot:Q9QZH3
Length = 301
Score = 157 (60.3 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 35/82 (42%), Positives = 51/82 (62%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
M+ ++ L+VGGL+ DD L AF FGDIT+ ++ + E+ K RGF FV ++ E A
Sbjct: 1 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDA 60
Query: 89 SSAQSAMDGQELNGRNIRVSFA 110
++A M+ EL GR IRV+ A
Sbjct: 61 AAAIDNMNESELFGRTIRVNLA 82
>UNIPROTKB|J3KTC1 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 Ensembl:ENST00000579590 Uniprot:J3KTC1
Length = 141
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 37/101 (36%), Positives = 54/101 (53%)
Query: 17 APKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRG 76
A S++ +V F S K+F+GGLSW T SL++ FS FG+I E V+ + + +SRG
Sbjct: 2 ADLTSVLTSVMFSPSS--KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRG 59
Query: 77 FGFVTYDSNESASSAQSAMDGQELNGRNI--RVSFANDRPP 115
FGFVT+ S EL+ + I +V+F P
Sbjct: 60 FGFVTFADPASVDKVLG-QPHHELDSKTIDPKVAFPRRAQP 99
>UNIPROTKB|Q3AF33 [details] [associations]
symbol:CHY_0389 "RNA-binding protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:CP000141 GenomeReviews:CP000141_GR
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 OMA:KRVHIPT RefSeq:YP_359251.1
ProteinModelPortal:Q3AF33 STRING:Q3AF33 GeneID:3728526
KEGG:chy:CHY_0389 PATRIC:21273941
BioCyc:CHYD246194:GJCN-390-MONOMER Uniprot:Q3AF33
Length = 83
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 34 TK-LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQ 92
TK L+VG L W L+E S FG++ A+VI E+ +G+SRG+GF+ +E A
Sbjct: 2 TKTLYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIEV-RDEDAEKFM 60
Query: 93 SAMDGQELNGRNIRVSFANDR 113
+ ++G+E+ GR + VS A +R
Sbjct: 61 TGLNGKEVEGRQLVVSEARER 81
>TIGR_CMR|CHY_0389 [details] [associations]
symbol:CHY_0389 "RNA-binding protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 HOGENOM:HOG000276232 OMA:KRVHIPT RefSeq:YP_359251.1
ProteinModelPortal:Q3AF33 STRING:Q3AF33 GeneID:3728526
KEGG:chy:CHY_0389 PATRIC:21273941
BioCyc:CHYD246194:GJCN-390-MONOMER Uniprot:Q3AF33
Length = 83
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 34 TK-LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQ 92
TK L+VG L W L+E S FG++ A+VI E+ +G+SRG+GF+ +E A
Sbjct: 2 TKTLYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIEV-RDEDAEKFM 60
Query: 93 SAMDGQELNGRNIRVSFANDR 113
+ ++G+E+ GR + VS A +R
Sbjct: 61 TGLNGKEVEGRQLVVSEARER 81
>TAIR|locus:2049339 [details] [associations]
symbol:AT2G21690 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC007019 HOGENOM:HOG000276232 EMBL:AC007119
HSSP:Q14103 IPI:IPI00516548 PIR:B84604 RefSeq:NP_179762.1
UniGene:At.52858 ProteinModelPortal:Q9SJ28 SMR:Q9SJ28
EnsemblPlants:AT2G21690.1 GeneID:816707 KEGG:ath:AT2G21690
TAIR:At2g21690 eggNOG:NOG254172 InParanoid:Q9SJ28 OMA:RSKCVNV
PhylomeDB:Q9SJ28 ProtClustDB:CLSN2913216 ArrayExpress:Q9SJ28
Genevestigator:Q9SJ28 Uniprot:Q9SJ28
Length = 117
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 29/71 (40%), Positives = 46/71 (64%)
Query: 37 FVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMD 96
FV GL TD+ L + FS FG++ ++K+I +R++GKSR FGFVT++ +S + A MD
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIMIMD 69
Query: 97 GQELNGRNIRV 107
+E + + V
Sbjct: 70 VEESRSKCVNV 80
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 163 (62.4 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 33/80 (41%), Positives = 48/80 (60%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQS 93
T +++ DD LK+ F FG KV+T+ ESGKS+GFGFV+++ +E A A
Sbjct: 159 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 217
Query: 94 AMDGQELNGRNIRVSFANDR 113
M+G+ELNG+ I V A +
Sbjct: 218 EMNGKELNGKQIYVGRAQKK 237
Score = 141 (54.7 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 36/99 (36%), Positives = 52/99 (52%)
Query: 12 RQNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERES 71
RQ K + R L+V L G DD L++ FS FG IT AKV+ E
Sbjct: 240 RQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--G 297
Query: 72 GKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 110
G+S+GFGFV + S E A+ A + M+G+ + + + V+ A
Sbjct: 298 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 336
>TAIR|locus:2133862 [details] [associations]
symbol:AT4G26650 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0042732 "D-xylose
metabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 EMBL:AF419605 EMBL:AY097345 IPI:IPI00533249
RefSeq:NP_567753.1 UniGene:At.20416 UniGene:At.67937
ProteinModelPortal:Q8W569 SMR:Q8W569 STRING:Q8W569 PRIDE:Q8W569
EnsemblPlants:AT4G26650.1 GeneID:828772 KEGG:ath:AT4G26650
TAIR:At4g26650 InParanoid:Q8W569 OMA:LVEAVIM PhylomeDB:Q8W569
ProtClustDB:CLSN2689626 Genevestigator:Q8W569 Uniprot:Q8W569
Length = 455
Score = 161 (61.7 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 30/79 (37%), Positives = 51/79 (64%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
KLF+GG+SW TD+ L+E F +GD+ EA ++ +R +G++RGFGF+ + ++ S + +
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVF-ADPSVAE-RVI 73
Query: 95 MDGQELNGRNIRVSFANDR 113
MD ++GR + A R
Sbjct: 74 MDKHIIDGRTVEAKKAVPR 92
Score = 129 (50.5 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 28/76 (36%), Positives = 40/76 (52%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
K+FVGGL ++ K F FG I + V+ + + + RGFGF+T+DS ES
Sbjct: 123 KIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHK 182
Query: 95 MDGQELNGRNIRVSFA 110
ELNG+ + V A
Sbjct: 183 TF-HELNGKMVEVKRA 197
>TAIR|locus:2046298 [details] [associations]
symbol:emb2444 "embryo defective 2444" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002685 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006135 HSSP:P11940
KO:K12831 EMBL:AY150466 IPI:IPI00516901 PIR:B84565
RefSeq:NP_179441.1 UniGene:At.20306 ProteinModelPortal:Q9ZU66
SMR:Q9ZU66 STRING:Q9ZU66 PRIDE:Q9ZU66 EnsemblPlants:AT2G18510.1
GeneID:816366 KEGG:ath:AT2G18510 TAIR:At2g18510 InParanoid:Q9ZU66
OMA:FIEYRSE PhylomeDB:Q9ZU66 ProtClustDB:CLSN2683050
Genevestigator:Q9ZU66 Uniprot:Q9ZU66
Length = 363
Score = 159 (61.0 bits), Expect = 4.6e-11, P = 4.6e-11
Identities = 33/76 (43%), Positives = 50/76 (65%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDI-TEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
LF+G L D+ L + FS FG I + K++ + ++G SRGFGF++YDS E++ +A +
Sbjct: 114 LFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIES 173
Query: 95 MDGQELNGRNIRVSFA 110
M GQ L+ R I VS+A
Sbjct: 174 MTGQYLSNRQITVSYA 189
Score = 95 (38.5 bits), Expect = 0.00044, P = 0.00044
Identities = 25/82 (30%), Positives = 42/82 (51%)
Query: 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESAS 89
+Q T ++VGGL + L E F G + V +R + + +GF+ Y S E A
Sbjct: 22 NQDAT-VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDAD 80
Query: 90 SAQSAMDGQELNGRNIRVSFAN 111
A ++ +L+G+ IRV+ A+
Sbjct: 81 YAIKVLNMIKLHGKPIRVNKAS 102
>UNIPROTKB|Q6IRQ4 [details] [associations]
symbol:rbmx "RNA-binding motif protein, X chromosome"
species:8355 "Xenopus laevis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007275
GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314
InterPro:IPR012604 Pfam:PF08081 CTD:27316 KO:K12885 EMBL:BC070649
RefSeq:NP_001084981.1 UniGene:Xl.25221 HSSP:P08579
ProteinModelPortal:Q6IRQ4 SMR:Q6IRQ4 GeneID:432041 KEGG:xla:432041
Xenbase:XB-GENE-6078824 Uniprot:Q6IRQ4
Length = 370
Score = 159 (61.0 bits), Expect = 4.8e-11, P = 4.8e-11
Identities = 30/76 (39%), Positives = 50/76 (65%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
KLF+GGL+ T++ +L+ F +G + E ++ +RE+ KSRGF FVT++S A A
Sbjct: 9 KLFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKDAARE 68
Query: 95 MDGQELNGRNIRVSFA 110
++G+ L+G+ I+V A
Sbjct: 69 LNGKALDGKPIKVEQA 84
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 163 (62.4 bits), Expect = 4.9e-11, P = 4.9e-11
Identities = 33/80 (41%), Positives = 48/80 (60%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQS 93
T +++ DD LK+ F FG KV+T+ ESGKS+GFGFV+++ +E A A
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 94 AMDGQELNGRNIRVSFANDR 113
M+G+ELNG+ I V A +
Sbjct: 250 EMNGKELNGKQIYVGRAQKK 269
Score = 141 (54.7 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 36/99 (36%), Positives = 52/99 (52%)
Query: 12 RQNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERES 71
RQ K + R L+V L G DD L++ FS FG IT AKV+ E
Sbjct: 272 RQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--G 329
Query: 72 GKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 110
G+S+GFGFV + S E A+ A + M+G+ + + + V+ A
Sbjct: 330 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 123 (48.4 bits), Expect = 9.6e-07, P = 9.6e-07
Identities = 27/72 (37%), Positives = 44/72 (61%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95
+F+ L D+ +L + FS FG+I KV+ + E+G S+G+GFV +++ E+A A M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 158
Query: 96 DGQELNGRNIRV 107
+G LN R + V
Sbjct: 159 NGMLLNDRKVFV 170
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 163 (62.4 bits), Expect = 4.9e-11, P = 4.9e-11
Identities = 33/80 (41%), Positives = 48/80 (60%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQS 93
T +++ DD LK+ F FG KV+T+ ESGKS+GFGFV+++ +E A A
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 94 AMDGQELNGRNIRVSFANDR 113
M+G+ELNG+ I V A +
Sbjct: 250 EMNGKELNGKQIYVGRAQKK 269
Score = 141 (54.7 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 36/99 (36%), Positives = 52/99 (52%)
Query: 12 RQNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERES 71
RQ K + R L+V L G DD L++ FS FG IT AKV+ E
Sbjct: 272 RQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--G 329
Query: 72 GKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 110
G+S+GFGFV + S E A+ A + M+G+ + + + V+ A
Sbjct: 330 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 123 (48.4 bits), Expect = 9.6e-07, P = 9.6e-07
Identities = 27/72 (37%), Positives = 44/72 (61%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95
+F+ L D+ +L + FS FG+I KV+ + E+G S+G+GFV +++ E+A A M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 158
Query: 96 DGQELNGRNIRV 107
+G LN R + V
Sbjct: 159 NGMLLNDRKVFV 170
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 163 (62.4 bits), Expect = 4.9e-11, P = 4.9e-11
Identities = 33/80 (41%), Positives = 48/80 (60%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQS 93
T +++ DD LK+ F FG KV+T+ ESGKS+GFGFV+++ +E A A
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 94 AMDGQELNGRNIRVSFANDR 113
M+G+ELNG+ I V A +
Sbjct: 250 EMNGKELNGKQIYVGRAQKK 269
Score = 141 (54.7 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 36/99 (36%), Positives = 52/99 (52%)
Query: 12 RQNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERES 71
RQ K + R L+V L G DD L++ FS FG IT AKV+ E
Sbjct: 272 RQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--G 329
Query: 72 GKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 110
G+S+GFGFV + S E A+ A + M+G+ + + + V+ A
Sbjct: 330 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 123 (48.4 bits), Expect = 9.6e-07, P = 9.6e-07
Identities = 27/72 (37%), Positives = 44/72 (61%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95
+F+ L D+ +L + FS FG+I KV+ + E+G S+G+GFV +++ E+A A M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 158
Query: 96 DGQELNGRNIRV 107
+G LN R + V
Sbjct: 159 NGMLLNDRKVFV 170
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 163 (62.4 bits), Expect = 4.9e-11, P = 4.9e-11
Identities = 33/80 (41%), Positives = 48/80 (60%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQS 93
T +++ DD LK+ F FG KV+T+ ESGKS+GFGFV+++ +E A A
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 94 AMDGQELNGRNIRVSFANDR 113
M+G+ELNG+ I V A +
Sbjct: 250 EMNGKELNGKQIYVGRAQKK 269
Score = 141 (54.7 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 36/99 (36%), Positives = 52/99 (52%)
Query: 12 RQNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERES 71
RQ K + R L+V L G DD L++ FS FG IT AKV+ E
Sbjct: 272 RQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--G 329
Query: 72 GKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 110
G+S+GFGFV + S E A+ A + M+G+ + + + V+ A
Sbjct: 330 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 123 (48.4 bits), Expect = 9.6e-07, P = 9.6e-07
Identities = 27/72 (37%), Positives = 44/72 (61%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95
+F+ L D+ +L + FS FG+I KV+ + E+G S+G+GFV +++ E+A A M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 158
Query: 96 DGQELNGRNIRV 107
+G LN R + V
Sbjct: 159 NGMLLNDRKVFV 170
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 163 (62.4 bits), Expect = 4.9e-11, P = 4.9e-11
Identities = 33/80 (41%), Positives = 48/80 (60%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQS 93
T +++ DD LK+ F FG KV+T+ ESGKS+GFGFV+++ +E A A
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 94 AMDGQELNGRNIRVSFANDR 113
M+G+ELNG+ I V A +
Sbjct: 250 EMNGKELNGKQIYVGRAQKK 269
Score = 141 (54.7 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 36/99 (36%), Positives = 52/99 (52%)
Query: 12 RQNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERES 71
RQ K + R L+V L G DD L++ FS FG IT AKV+ E
Sbjct: 272 RQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--G 329
Query: 72 GKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 110
G+S+GFGFV + S E A+ A + M+G+ + + + V+ A
Sbjct: 330 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 123 (48.4 bits), Expect = 9.6e-07, P = 9.6e-07
Identities = 27/72 (37%), Positives = 44/72 (61%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95
+F+ L D+ +L + FS FG+I KV+ + E+G S+G+GFV +++ E+A A M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 158
Query: 96 DGQELNGRNIRV 107
+G LN R + V
Sbjct: 159 NGMLLNDRKVFV 170
>UNIPROTKB|Q3ZBT6 [details] [associations]
symbol:TRA2B "Transformer-2 protein homolog beta"
species:9913 "Bos taurus" [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0000398 GO:GO:0048026 GO:GO:0000381 HOGENOM:HOG000276232
GeneTree:ENSGT00700000104309 HSSP:P62995 KO:K12897
OrthoDB:EOG4BVRW2 EMBL:BC103113 IPI:IPI00717759
RefSeq:NP_001029948.1 UniGene:Bt.49333 ProteinModelPortal:Q3ZBT6
SMR:Q3ZBT6 STRING:Q3ZBT6 PRIDE:Q3ZBT6 Ensembl:ENSBTAT00000002225
GeneID:615156 KEGG:bta:615156 CTD:6434 eggNOG:NOG297815
HOVERGEN:HBG104971 InParanoid:Q3ZBT6 OMA:YDDREYY NextBio:20899475
Uniprot:Q3ZBT6
Length = 288
Score = 156 (60.0 bits), Expect = 5.0e-11, P = 5.0e-11
Identities = 31/80 (38%), Positives = 50/80 (62%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95
L V GLS T + L+E FS +G I + ++ +++S +SRGF FV +++ + A A+
Sbjct: 120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 179
Query: 96 DGQELNGRNIRVSFANDRPP 115
+G EL+GR IRV F+ + P
Sbjct: 180 NGMELDGRRIRVDFSITKRP 199
>UNIPROTKB|E2RD37 [details] [associations]
symbol:TRA2B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 OMA:YDDREYY EMBL:AAEX03017294
ProteinModelPortal:E2RD37 PRIDE:E2RD37 Ensembl:ENSCAFT00000021194
NextBio:20853966 Uniprot:E2RD37
Length = 288
Score = 156 (60.0 bits), Expect = 5.0e-11, P = 5.0e-11
Identities = 31/80 (38%), Positives = 50/80 (62%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95
L V GLS T + L+E FS +G I + ++ +++S +SRGF FV +++ + A A+
Sbjct: 120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 179
Query: 96 DGQELNGRNIRVSFANDRPP 115
+G EL+GR IRV F+ + P
Sbjct: 180 NGMELDGRRIRVDFSITKRP 199
>UNIPROTKB|P62995 [details] [associations]
symbol:TRA2B "Transformer-2 protein homolog beta"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000375 "RNA splicing, via
transesterification reactions" evidence=TAS] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0048026
"positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
EMBL:CH471052 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0048026 GO:GO:0000381 HOGENOM:HOG000276232 KO:K12897
OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 HOVERGEN:HBG104971
OMA:YDDREYY EMBL:U61267 EMBL:U87836 EMBL:AF057159 EMBL:U68063
EMBL:AK301118 EMBL:BC000160 EMBL:BC000451 EMBL:BC005898
IPI:IPI00220938 IPI:IPI00301503 IPI:IPI00472633
RefSeq:NP_001230808.1 RefSeq:NP_004584.1 UniGene:Hs.533122 PDB:2CQC
PDB:2KXN PDB:2RRA PDB:2RRB PDBsum:2CQC PDBsum:2KXN PDBsum:2RRA
PDBsum:2RRB ProteinModelPortal:P62995 SMR:P62995 DIP:DIP-42278N
IntAct:P62995 MINT:MINT-5004415 STRING:P62995 PhosphoSite:P62995
DMDM:51703330 PaxDb:P62995 PRIDE:P62995 DNASU:6434
Ensembl:ENST00000342294 Ensembl:ENST00000382191
Ensembl:ENST00000453386 Ensembl:ENST00000456380 GeneID:6434
KEGG:hsa:6434 UCSC:uc003fpv.3 GeneCards:GC03M185632
H-InvDB:HIX0003928 HGNC:HGNC:10781 HPA:CAB011692 MIM:602719
neXtProt:NX_P62995 PharmGKB:PA35697 InParanoid:P62995
PhylomeDB:P62995 ChiTaRS:TRA2B EvolutionaryTrace:P62995
GenomeRNAi:6434 NextBio:24991 Bgee:P62995 CleanEx:HS_SFRS10
Genevestigator:P62995 GermOnline:ENSG00000136527 Uniprot:P62995
Length = 288
Score = 156 (60.0 bits), Expect = 5.0e-11, P = 5.0e-11
Identities = 31/80 (38%), Positives = 50/80 (62%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95
L V GLS T + L+E FS +G I + ++ +++S +SRGF FV +++ + A A+
Sbjct: 120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 179
Query: 96 DGQELNGRNIRVSFANDRPP 115
+G EL+GR IRV F+ + P
Sbjct: 180 NGMELDGRRIRVDFSITKRP 199
>MGI|MGI:106016 [details] [associations]
symbol:Tra2b "transformer 2 beta homolog (Drosophila)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:106016 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000398 GO:GO:0048026 GO:GO:0000381
HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 KO:K12897
OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 HOVERGEN:HBG104971
OMA:YDDREYY EMBL:X80232 EMBL:AK049573 EMBL:AK077418 EMBL:AK080378
EMBL:BC061177 IPI:IPI00139259 IPI:IPI00457594 PIR:S68798
RefSeq:NP_033212.1 UniGene:Mm.210352 UniGene:Mm.389440
UniGene:Mm.442193 ProteinModelPortal:P62996 SMR:P62996
STRING:P62996 PhosphoSite:P62996 PaxDb:P62996 PRIDE:P62996
Ensembl:ENSMUST00000161286 Ensembl:ENSMUST00000162413 GeneID:20462
KEGG:mmu:20462 UCSC:uc007ysc.1 InParanoid:P62996 NextBio:298551
Bgee:P62996 Genevestigator:P62996 GermOnline:ENSMUSG00000022858
Uniprot:P62996
Length = 288
Score = 156 (60.0 bits), Expect = 5.0e-11, P = 5.0e-11
Identities = 31/80 (38%), Positives = 50/80 (62%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95
L V GLS T + L+E FS +G I + ++ +++S +SRGF FV +++ + A A+
Sbjct: 120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 179
Query: 96 DGQELNGRNIRVSFANDRPP 115
+G EL+GR IRV F+ + P
Sbjct: 180 NGMELDGRRIRVDFSITKRP 199
>RGD|619886 [details] [associations]
symbol:Tra2b "transformer 2 beta homolog (Drosophila)"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000302 "response to reactive oxygen species"
evidence=IEP] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO;ISS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO;ISS] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISO;ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISO;ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:619886 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000302 GO:GO:0000398 GO:GO:0048026
GO:GO:0000381 HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309
KO:K12897 OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815
HOVERGEN:HBG104971 EMBL:D49708 EMBL:BC070948 IPI:IPI00202484
RefSeq:NP_476460.1 UniGene:Rn.8538 ProteinModelPortal:P62997
SMR:P62997 IntAct:P62997 STRING:P62997 PhosphoSite:P62997
PRIDE:P62997 Ensembl:ENSRNOT00000002429 GeneID:117259
KEGG:rno:117259 UCSC:RGD:619886 InParanoid:P62997 NextBio:620130
Genevestigator:P62997 GermOnline:ENSRNOG00000001783 Uniprot:P62997
Length = 288
Score = 156 (60.0 bits), Expect = 5.0e-11, P = 5.0e-11
Identities = 31/80 (38%), Positives = 50/80 (62%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95
L V GLS T + L+E FS +G I + ++ +++S +SRGF FV +++ + A A+
Sbjct: 120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 179
Query: 96 DGQELNGRNIRVSFANDRPP 115
+G EL+GR IRV F+ + P
Sbjct: 180 NGMELDGRRIRVDFSITKRP 199
>UNIPROTKB|A9UMT9 [details] [associations]
symbol:LOC100135403 "LOC100135403 protein" species:8364
"Xenopus (Silurana) tropicalis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081
EMBL:BC157792 UniGene:Str.67350 ProteinModelPortal:A9UMT9
STRING:A9UMT9 Uniprot:A9UMT9
Length = 375
Score = 159 (61.0 bits), Expect = 5.0e-11, P = 5.0e-11
Identities = 30/76 (39%), Positives = 50/76 (65%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
KLF+GGL+ T++ +L+ F +G + E ++ +RE+ KSRGF FVT++S A A
Sbjct: 9 KLFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKDAARE 68
Query: 95 MDGQELNGRNIRVSFA 110
++G+ L+G+ I+V A
Sbjct: 69 LNGKALDGKPIKVEQA 84
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 163 (62.4 bits), Expect = 5.0e-11, P = 5.0e-11
Identities = 33/80 (41%), Positives = 50/80 (62%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQS 93
T +++ L DD L++ FS FG KV+T+ ESGKS+GFGFV+++ +E A A
Sbjct: 191 TNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTD-ESGKSKGFGFVSFERHEDARKAVD 249
Query: 94 AMDGQELNGRNIRVSFANDR 113
M+G++LNG+ I V A +
Sbjct: 250 EMNGKDLNGKQIYVGRAQKK 269
Score = 142 (55.0 bits), Expect = 8.9e-09, P = 8.9e-09
Identities = 35/93 (37%), Positives = 51/93 (54%)
Query: 18 PKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGF 77
PK + R + L+V L G DD L++ FS FG IT AKV E G+S+GF
Sbjct: 288 PKIEQVPQDRSVRCQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVTME--GGRSKGF 345
Query: 78 GFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 110
GFV + S E A+ A + M+G+ + + + V+ A
Sbjct: 346 GFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 378
Score = 122 (48.0 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 28/72 (38%), Positives = 42/72 (58%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95
+FV L D +L + FS FG+I KV+ + E+G S+G+GFV +++ E A A M
Sbjct: 101 IFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEEAERAIEKM 158
Query: 96 DGQELNGRNIRV 107
+G LN R + V
Sbjct: 159 NGMFLNDRKVFV 170
Score = 97 (39.2 bits), Expect = 0.00059, P = 0.00059
Identities = 24/85 (28%), Positives = 40/85 (47%)
Query: 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESAS 89
S S L+VG L ++ L E FS G I +V +R + +S G+ V + E A
Sbjct: 7 SYSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAE 66
Query: 90 SAQSAMDGQELNGRNIRVSFANDRP 114
A M+ + G+ +R+ ++ P
Sbjct: 67 RALDTMNFDVIKGKPVRIMWSQRDP 91
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 163 (62.4 bits), Expect = 5.0e-11, P = 5.0e-11
Identities = 33/80 (41%), Positives = 48/80 (60%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQS 93
T +++ DD LK+ F FG KV+T+ ESGKS+GFGFV+++ +E A A
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 94 AMDGQELNGRNIRVSFANDR 113
M+G+ELNG+ I V A +
Sbjct: 250 EMNGKELNGKQIYVGRAQKK 269
Score = 141 (54.7 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 36/99 (36%), Positives = 52/99 (52%)
Query: 12 RQNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERES 71
RQ K + R L+V L G DD L++ FS FG IT AKV+ E
Sbjct: 272 RQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--G 329
Query: 72 GKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 110
G+S+GFGFV + S E A+ A + M+G+ + + + V+ A
Sbjct: 330 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 123 (48.4 bits), Expect = 9.8e-07, P = 9.8e-07
Identities = 27/72 (37%), Positives = 44/72 (61%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95
+F+ L D+ +L + FS FG+I KV+ + E+G S+G+GFV +++ E+A A M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 158
Query: 96 DGQELNGRNIRV 107
+G LN R + V
Sbjct: 159 NGMLLNDRKVFV 170
>UNIPROTKB|Q5TGA3 [details] [associations]
symbol:PPIE "Peptidyl-prolyl cis-trans isomerase E"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003755
"peptidyl-prolyl cis-trans isomerase activity" evidence=IEA]
[GO:0006457 "protein folding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 InterPro:IPR016304
InterPro:IPR020892 Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475
PRINTS:PR00153 PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 EMBL:AL035404
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL033527 GO:GO:0003755
SUPFAM:SSF50891 GO:GO:0000413 HOVERGEN:HBG001065 CTD:10450
KO:K09564 OMA:AFIEFEL EMBL:AL049824 UniGene:Hs.524690 DNASU:10450
GeneID:10450 KEGG:hsa:10450 HGNC:HGNC:9258 ChiTaRS:PPIE
GenomeRNAi:10450 NextBio:39609 IPI:IPI00514173
RefSeq:NP_001181936.1 SMR:Q5TGA3 MINT:MINT-1475497 STRING:Q5TGA3
Ensembl:ENST00000372830 UCSC:uc001cdw.3 Uniprot:Q5TGA3
Length = 314
Score = 157 (60.3 bits), Expect = 5.2e-11, P = 5.2e-11
Identities = 35/82 (42%), Positives = 51/82 (62%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
M+ ++ L+VGGL+ DD L AF FGDIT+ ++ + E+ K RGF FV ++ E A
Sbjct: 1 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDA 60
Query: 89 SSAQSAMDGQELNGRNIRVSFA 110
++A M+ EL GR IRV+ A
Sbjct: 61 AAAIDNMNESELFGRTIRVNLA 82
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 158 (60.7 bits), Expect = 5.3e-11, P = 5.3e-11
Identities = 32/68 (47%), Positives = 44/68 (64%)
Query: 46 DDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNI 105
DD LK+ F FG KV+T+ ESGKS+GFGFV+++ +E A A M+G+ELNG+ I
Sbjct: 203 DDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261
Query: 106 RVSFANDR 113
V A +
Sbjct: 262 YVGRAQKK 269
Score = 127 (49.8 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 28/54 (51%), Positives = 36/54 (66%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESAS 89
L+V L G DD L++AFS FG IT AKV+ E G+S+GFGFV + S E A+
Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEAT 347
Score = 115 (45.5 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 26/72 (36%), Positives = 44/72 (61%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95
+FV L ++ +L + S FG+I V+ + E+G S+G+GFV ++++E+A A M
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCD-ENG-SKGYGFVHFETHEAAERAIKKM 158
Query: 96 DGQELNGRNIRV 107
+G LNGR + V
Sbjct: 159 NGMLLNGRKVFV 170
>ZFIN|ZDB-GENE-030131-1506 [details] [associations]
symbol:tia1 "cytotoxic granule-associated RNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-1506 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:WAVEPGQ
EMBL:CT027545 EMBL:AL928954 EMBL:BC045368 IPI:IPI00511851
RefSeq:NP_997793.1 UniGene:Dr.159520 SMR:Q7ZVY0
Ensembl:ENSDART00000074400 GeneID:793165 KEGG:dre:793165
InParanoid:Q7ZVY0 NextBio:20931339 Uniprot:Q7ZVY0
Length = 386
Score = 159 (61.0 bits), Expect = 5.3e-11, P = 5.3e-11
Identities = 32/80 (40%), Positives = 51/80 (63%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95
+FVG LS ++ AF+ FG I++A+V+ + +GKS+G+GFV++ + A +A M
Sbjct: 98 VFVGDLSPEITTDDIRAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 157
Query: 96 DGQELNGRNIRVSFANDRPP 115
GQ L GR IR ++A +PP
Sbjct: 158 GGQWLGGRQIRTNWATRKPP 177
Score = 108 (43.1 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 25/86 (29%), Positives = 46/86 (53%)
Query: 21 SLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFV 80
S V S S ++ GG++ G + +++ FS FG I E +V ++ G+ FV
Sbjct: 191 SFDEVVNQSSPSNCTVYCGGVTTGLTEQLMRQTFSPFGQIMEVRVFPDK------GYSFV 244
Query: 81 TYDSNESASSAQSAMDGQELNGRNIR 106
++S+ESA+ A +++G L G ++
Sbjct: 245 RFNSHESAAHAIVSVNGTSLEGHIVK 270
>RGD|1306751 [details] [associations]
symbol:Rbmxrtl "RNA binding motif protein, X chromosome
retrogene-like" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0001047 "core promoter binding" evidence=ISO] [GO:0003682
"chromatin binding" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0005719 "nuclear euchromatin" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0006376 "mRNA splice site selection"
evidence=IDA] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISS] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0044530 "supraspliceosomal complex" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO;ISS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IDA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0051260 "protein homooligomerization"
evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISS] [GO:0071347 "cellular response to interleukin-1"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1306751 GO:GO:0007275
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0006366 GO:GO:0006509
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0006376 GO:GO:0000381
GO:GO:0044530 GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
OMA:ILLMKDR OrthoDB:EOG4001KF UniGene:Rn.19966 EMBL:AABR03113401
IPI:IPI00559910 RefSeq:NP_001100890.1 ProteinModelPortal:P84586
SMR:P84586 STRING:P84586 PhosphoSite:P84586 PRIDE:P84586
Ensembl:ENSRNOT00000016184 GeneID:307779 KEGG:rno:307779
UCSC:RGD:1306751 CTD:307779 InParanoid:P84586 NextBio:657858
Genevestigator:P84586 GermOnline:ENSRNOG00000012138 Uniprot:P84586
Length = 388
Score = 159 (61.0 bits), Expect = 5.4e-11, P = 5.4e-11
Identities = 31/76 (40%), Positives = 49/76 (64%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
KLF+GGL+ T++ +L+ F +G I E ++ +RE+ KSRGF FVT++S A
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARD 68
Query: 95 MDGQELNGRNIRVSFA 110
M+G+ L+G+ I+V A
Sbjct: 69 MNGKSLDGKAIKVEQA 84
>RGD|1585845 [details] [associations]
symbol:Rbmxl1 "RNA binding motif protein, X-linked-like 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1585845 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
OrthoDB:EOG4CNQSK EMBL:AC136101 IPI:IPI00763272 UniGene:Rn.19966
Ensembl:ENSRNOT00000041672 UCSC:RGD:1585845 Uniprot:D4AE41
Length = 388
Score = 159 (61.0 bits), Expect = 5.4e-11, P = 5.4e-11
Identities = 31/76 (40%), Positives = 49/76 (64%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
KLF+GGL+ T++ +L+ F +G I E ++ +RE+ KSRGF FVT++S A
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARD 68
Query: 95 MDGQELNGRNIRVSFA 110
M+G+ L+G+ I+V A
Sbjct: 69 MNGKSLDGKAIKVEQA 84
>RGD|69255 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10116 "Rattus norvegicus" [GO:0001837 "epithelial to
mesenchymal transition" evidence=ISO] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003688 "DNA replication origin binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0045892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003688 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 PIR:PC4375 PIR:PC4376 PIR:PC4377 UniGene:Rn.1427
UniGene:Rn.217734 EMBL:AF108653 IPI:IPI00208193
ProteinModelPortal:Q9Z0U8 SMR:Q9Z0U8 IntAct:Q9Z0U8 MINT:MINT-7138483
STRING:Q9Z0U8 PRIDE:Q9Z0U8 UCSC:RGD:69255 Genevestigator:Q9Z0U8
Uniprot:Q9Z0U8
Length = 298
Score = 156 (60.0 bits), Expect = 5.6e-11, P = 5.6e-11
Identities = 35/95 (36%), Positives = 57/95 (60%)
Query: 13 QNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESG 72
QNG+ + INA + + K+FVGGLSW T LK+ F+ FG++ + + + +G
Sbjct: 71 QNGEGDQ---INASK-NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTG 126
Query: 73 KSRGFGFVTYDSNESASSAQSAMDGQE--LNGRNI 105
+SRGFGF+ + + +SS + +D +E L+GR I
Sbjct: 127 RSRGFGFILF---KDSSSVEKVLDQKEHRLDGRVI 158
>UNIPROTKB|H0YAP2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519622
Uniprot:H0YAP2
Length = 131
Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 31/67 (46%), Positives = 43/67 (64%)
Query: 47 DSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIR 106
D LK+ F FG KV+T+ ESGKS+GFGFV+++ +E A A M+G+ELNG+ I
Sbjct: 2 DERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 60
Query: 107 VSFANDR 113
V A +
Sbjct: 61 VGRAQKK 67
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 162 (62.1 bits), Expect = 6.2e-11, P = 6.2e-11
Identities = 34/80 (42%), Positives = 49/80 (61%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQS 93
T +++ DD L+E FS FG+ KV+ + ++G+SRGFGFV Y ++E A A S
Sbjct: 191 TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVS 249
Query: 94 AMDGQELNGRNIRVSFANDR 113
M+G+E+NGR I V A R
Sbjct: 250 EMNGKEVNGRMIYVGRAQKR 269
Score = 153 (58.9 bits), Expect = 5.7e-10, P = 5.7e-10
Identities = 38/111 (34%), Positives = 59/111 (53%)
Query: 1 MAFCGKLGMLVRQNGQAP-KASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGD 59
M + G+ + + G+ K I R L+V L G DD L++ FS +G
Sbjct: 260 MIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGT 319
Query: 60 ITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 110
IT AKV+TE G S+GFGFV + S E A+ A + M+G+ ++ + + V+ A
Sbjct: 320 ITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
Score = 127 (49.8 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 29/78 (37%), Positives = 45/78 (57%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95
+F+ L D+ +L + FS FG+I KV+ + E G SRG+GFV +++ E+A+ A M
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCD-EHG-SRGYGFVHFETQEAANRAIQTM 158
Query: 96 DGQELNGRNIRVSFANDR 113
+G LN R + V R
Sbjct: 159 NGMLLNDRKVFVGHFKSR 176
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 162 (62.1 bits), Expect = 6.2e-11, P = 6.2e-11
Identities = 34/80 (42%), Positives = 48/80 (60%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQS 93
T +++ DD LKE FS FG+ KV+ + SG+SRGFGFV Y ++E A A +
Sbjct: 191 TNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVT 249
Query: 94 AMDGQELNGRNIRVSFANDR 113
M+G+E+NGR + V A R
Sbjct: 250 EMNGKEVNGRMVYVGRAQKR 269
Score = 150 (57.9 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 37/111 (33%), Positives = 58/111 (52%)
Query: 1 MAFCGKLGMLVRQNGQAP-KASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGD 59
M + G+ + + G+ K I R L+V L G DD L++ FS +G
Sbjct: 260 MVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGT 319
Query: 60 ITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 110
IT KV+TE G S+GFGFV + S E A+ A + M+G+ ++ + + V+ A
Sbjct: 320 ITSTKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
Score = 130 (50.8 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 30/78 (38%), Positives = 45/78 (57%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95
+F+ L D+ +L + FS FGDI KV+ + E G SRG+GFV +++ E+A+ A M
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGDILSCKVVCD-EYG-SRGYGFVHFETQEAANRAIQTM 158
Query: 96 DGQELNGRNIRVSFANDR 113
+G LN R + V R
Sbjct: 159 NGMLLNDRKVFVGHFKSR 176
>TAIR|locus:2168848 [details] [associations]
symbol:AT5G40490 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 EMBL:AB009052 HOGENOM:HOG000234441
HSSP:Q61474 KO:K12741 eggNOG:NOG289504 EMBL:AY136466
IPI:IPI00518075 RefSeq:NP_198865.1 UniGene:At.30284
ProteinModelPortal:Q9FM47 SMR:Q9FM47 PaxDb:Q9FM47 PRIDE:Q9FM47
EnsemblPlants:AT5G40490.1 GeneID:834047 KEGG:ath:AT5G40490
TAIR:At5g40490 InParanoid:Q9FM47 OMA:YESEDMV PhylomeDB:Q9FM47
ProtClustDB:CLSN2916909 ArrayExpress:Q9FM47 Genevestigator:Q9FM47
Uniprot:Q9FM47
Length = 423
Score = 159 (61.0 bits), Expect = 6.5e-11, P = 6.5e-11
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
K+FVGG+ DD KE F FG++ E +++ + +G+SRGFGFVTY+S + +
Sbjct: 131 KIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAK 190
Query: 95 MDGQELNGRNIRVSFANDRPP 115
+ EL+G + + A + P
Sbjct: 191 GNRIELSGTQVEIKKAEPKKP 211
Score = 124 (48.7 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 24/55 (43%), Positives = 39/55 (70%)
Query: 32 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTY-DSN 85
S K+FVGGL+ T + + F +G+IT++ ++ +R++G+ RGFGFVTY DS+
Sbjct: 40 SAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSS 94
>UNIPROTKB|J9P7U8 [details] [associations]
symbol:PPIE "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006457 "protein folding" evidence=IEA]
[GO:0003755 "peptidyl-prolyl cis-trans isomerase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 InterPro:IPR016304
InterPro:IPR020892 Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475
PRINTS:PR00153 PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 OMA:AFIEFEL EMBL:AAEX03009569
EMBL:AAEX03009570 Ensembl:ENSCAFT00000046678 Uniprot:J9P7U8
Length = 343
Score = 157 (60.3 bits), Expect = 6.6e-11, P = 6.6e-11
Identities = 35/82 (42%), Positives = 51/82 (62%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
M+ ++ L+VGGL+ DD L AF FGDIT+ ++ + E+ K RGF FV ++ E A
Sbjct: 1 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDA 60
Query: 89 SSAQSAMDGQELNGRNIRVSFA 110
++A M+ EL GR IRV+ A
Sbjct: 61 AAAIDNMNESELFGRTIRVNLA 82
>ZFIN|ZDB-GENE-030131-6154 [details] [associations]
symbol:hnrnpa0b "heterogeneous nuclear
ribonucleoprotein A0b" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-6154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12894
EMBL:BC066434 IPI:IPI00507638 RefSeq:NP_999871.1 UniGene:Dr.35374
ProteinModelPortal:Q6NYW8 SMR:Q6NYW8 STRING:Q6NYW8 PRIDE:Q6NYW8
GeneID:334222 KEGG:dre:334222 CTD:334222 InParanoid:Q6NYW8
OrthoDB:EOG4M65KN NextBio:20810313 ArrayExpress:Q6NYW8 Bgee:Q6NYW8
Uniprot:Q6NYW8
Length = 314
Score = 156 (60.0 bits), Expect = 6.6e-11, P = 6.6e-11
Identities = 32/76 (42%), Positives = 48/76 (63%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
K+FVGGL ++ L E FS FG I +++VIT++++GK RGFGFV ++ N+SA A
Sbjct: 100 KIFVGGLKDDIEEKDLTEFFSQFGMIEKSEVITDKDTGKKRGFGFVHFEDNDSADKAV-V 158
Query: 95 MDGQELNGRNIRVSFA 110
+ +NG + V A
Sbjct: 159 LKFHMINGHKVEVKKA 174
Score = 142 (55.0 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
KLFVGGL+ T + L+ F FG++T+ V+ + +SR FGFVTY ++E A +A +A
Sbjct: 9 KLFVGGLNVQTTNDGLRSYFEQFGNLTDCVVVQNDQLQRSRCFGFVTYSTSEEADAAMAA 68
Query: 95 MDGQELNGRNIRVSFA 110
++G+N+ V A
Sbjct: 69 RP-HVVDGKNVEVKRA 83
>TAIR|locus:2176222 [details] [associations]
symbol:AT5G51300 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00322 SMART:SM00343
SMART:SM00360 EMBL:CP002688 GO:GO:0008380 GO:GO:0000166
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:4.10.60.10
SUPFAM:SSF57756 HSSP:Q9BW01 KO:K13095 EMBL:AB023044 OMA:GDGPSHE
EMBL:AY142629 EMBL:AK316802 EMBL:AK317057 IPI:IPI00537668
RefSeq:NP_001032055.1 RefSeq:NP_199943.1 RefSeq:NP_851169.1
UniGene:At.22924 ProteinModelPortal:Q9LU44 SMR:Q9LU44 IntAct:Q9LU44
STRING:Q9LU44 PRIDE:Q9LU44 EnsemblPlants:AT5G51300.1
EnsemblPlants:AT5G51300.2 EnsemblPlants:AT5G51300.3 GeneID:835204
KEGG:ath:AT5G51300 TAIR:At5g51300 InParanoid:Q9LU44
PhylomeDB:Q9LU44 ProtClustDB:CLSN2687224 Genevestigator:Q9LU44
Uniprot:Q9LU44
Length = 804
Score = 163 (62.4 bits), Expect = 6.9e-11, P = 6.9e-11
Identities = 34/83 (40%), Positives = 49/83 (59%)
Query: 33 QTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQ 92
+T L++G L +D L FS+FG+I AKVI +R +G S+G+GFV Y + A++A
Sbjct: 479 ETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAV 538
Query: 93 SAMDGQELNGRNIRVSFANDRPP 115
AM+G GR + V A PP
Sbjct: 539 QAMNGYRFEGRTLAVRIAGKSPP 561
>UNIPROTKB|D6R9P3 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964686 ProteinModelPortal:D6R9P3
SMR:D6R9P3 Ensembl:ENST00000515193 ArrayExpress:D6R9P3 Bgee:D6R9P3
Uniprot:D6R9P3
Length = 280
Score = 154 (59.3 bits), Expect = 7.5e-11, P = 7.5e-11
Identities = 35/95 (36%), Positives = 56/95 (58%)
Query: 13 QNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESG 72
QNG + INA + + K+FVGGLSW T LK+ F+ FG++ + + + +G
Sbjct: 52 QNGA--EGDQINASK-NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTG 108
Query: 73 KSRGFGFVTYDSNESASSAQSAMDGQE--LNGRNI 105
+SRGFGF+ + + A+S + +D +E L+GR I
Sbjct: 109 RSRGFGFILF---KDAASVEKVLDQKEHRLDGRVI 140
Score = 93 (37.8 bits), Expect = 0.00047, P = 0.00047
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNE 86
K+FVGGL+ + ++E F FG+I ++ + + K RGF F+T+ E
Sbjct: 155 KIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEE 206
>UNIPROTKB|D6RD18 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00966854 ProteinModelPortal:D6RD18
SMR:D6RD18 Ensembl:ENST00000514633 ArrayExpress:D6RD18 Bgee:D6RD18
Uniprot:D6RD18
Length = 283
Score = 154 (59.3 bits), Expect = 7.9e-11, P = 7.9e-11
Identities = 35/95 (36%), Positives = 56/95 (58%)
Query: 13 QNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESG 72
QNG + INA + + K+FVGGLSW T LK+ F+ FG++ + + + +G
Sbjct: 52 QNGA--EGDQINASK-NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTG 108
Query: 73 KSRGFGFVTYDSNESASSAQSAMDGQE--LNGRNI 105
+SRGFGF+ + + A+S + +D +E L+GR I
Sbjct: 109 RSRGFGFILF---KDAASVEKVLDQKEHRLDGRVI 140
Score = 93 (37.8 bits), Expect = 0.00048, P = 0.00048
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNE 86
K+FVGGL+ + ++E F FG+I ++ + + K RGF F+T+ E
Sbjct: 155 KIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEE 206
>UNIPROTKB|Q3ZC44 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 OMA:FILFKDP EMBL:DAAA02020063
EMBL:DAAA02020062 EMBL:BC102923 IPI:IPI00843025
RefSeq:NP_001035612.1 UniGene:Bt.58979 SMR:Q3ZC44
Ensembl:ENSBTAT00000018114 GeneID:513410 KEGG:bta:513410
NextBio:20870841 Uniprot:Q3ZC44
Length = 285
Score = 154 (59.3 bits), Expect = 8.1e-11, P = 8.1e-11
Identities = 35/95 (36%), Positives = 56/95 (58%)
Query: 13 QNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESG 72
QNG + INA + + K+FVGGLSW T LK+ F+ FG++ + + + +G
Sbjct: 52 QNGA--EGDQINASK-NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTG 108
Query: 73 KSRGFGFVTYDSNESASSAQSAMDGQE--LNGRNI 105
+SRGFGF+ + + A+S + +D +E L+GR I
Sbjct: 109 RSRGFGFILF---KDATSVEKVLDQKEHRLDGRVI 140
Score = 99 (39.9 bits), Expect = 0.00011, P = 0.00011
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNE 86
K+FVGGL+ + ++E F FG+I ++ + +S K RGF F+T+ E
Sbjct: 155 KIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEE 206
>MGI|MGI:1330294 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001837 "epithelial to mesenchymal transition"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003688 "DNA
replication origin binding" evidence=ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1330294 GO:GO:0005634
GO:GO:0005737 GO:GO:0045893 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
GO:GO:0001837 UniGene:Mm.490267 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 OrthoDB:EOG42BX9K
ChiTaRS:HNRNPAB EMBL:D90151 EMBL:L36663 EMBL:AK076132
IPI:IPI00117288 PIR:JQ0448 RefSeq:NP_034578.1 UniGene:Mm.280842
ProteinModelPortal:Q99020 SMR:Q99020 DIP:DIP-31415N IntAct:Q99020
MINT:MINT-4132837 STRING:Q99020 PhosphoSite:Q99020 PaxDb:Q99020
PRIDE:Q99020 Ensembl:ENSMUST00000074669 GeneID:15384 KEGG:mmu:15384
NextBio:288056 Bgee:Q99020 Genevestigator:Q99020
GermOnline:ENSMUSG00000020358 Uniprot:Q99020
Length = 285
Score = 154 (59.3 bits), Expect = 8.1e-11, P = 8.1e-11
Identities = 35/95 (36%), Positives = 56/95 (58%)
Query: 13 QNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESG 72
QNG + INA + + K+FVGGLSW T LK+ F+ FG++ + + + +G
Sbjct: 57 QNGA--EGDQINASK-NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTG 113
Query: 73 KSRGFGFVTYDSNESASSAQSAMDGQE--LNGRNI 105
+SRGFGF+ + + +SS + +D +E L+GR I
Sbjct: 114 RSRGFGFILF---KDSSSVEKVLDQKEHRLDGRVI 145
>UNIPROTKB|Q9QX80 [details] [associations]
symbol:Hnrnpab "Hnrpab protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295
HSSP:Q14103 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 EMBL:AC105470
EMBL:AF216753 EMBL:BC066664 EMBL:AJ238855 IPI:IPI00212723
PIR:PC4375 PIR:PC4376 PIR:PC4377 RefSeq:NP_112620.2
RefSeq:XP_003750864.1 UniGene:Rn.1427 UniGene:Rn.217734 SMR:Q9QX80
STRING:Q9QX80 Ensembl:ENSRNOT00000033056 GeneID:100910156
GeneID:83498 KEGG:rno:100910156 KEGG:rno:83498 NextBio:615904
Genevestigator:Q9QX80 Uniprot:Q9QX80
Length = 285
Score = 154 (59.3 bits), Expect = 8.1e-11, P = 8.1e-11
Identities = 35/95 (36%), Positives = 56/95 (58%)
Query: 13 QNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESG 72
QNG + INA + + K+FVGGLSW T LK+ F+ FG++ + + + +G
Sbjct: 57 QNGA--EGDQINASK-NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTG 113
Query: 73 KSRGFGFVTYDSNESASSAQSAMDGQE--LNGRNI 105
+SRGFGF+ + + +SS + +D +E L+GR I
Sbjct: 114 RSRGFGFILF---KDSSSVEKVLDQKEHRLDGRVI 145
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 156 (60.0 bits), Expect = 8.5e-11, P = 8.5e-11
Identities = 31/79 (39%), Positives = 51/79 (64%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95
+FVG LS ++ AF+ FG I++A+V+ + +GKS+G+GF+++ + A SA M
Sbjct: 99 VFVGDLSPEISTDDVRAAFAPFGKISDARVVKDLATGKSKGYGFISFINKWDAESAIQQM 158
Query: 96 DGQELNGRNIRVSFANDRP 114
+GQ L GR IR ++A +P
Sbjct: 159 NGQWLGGRQIRTNWATRKP 177
Score = 112 (44.5 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 24/77 (31%), Positives = 43/77 (55%)
Query: 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESAS 89
S S ++ GG++ G D +++ FS FG I E +V E+ G+ FV +DS+E A+
Sbjct: 202 SPSNCTVYCGGIASGLSDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFDSHEGAA 255
Query: 90 SAQSAMDGQELNGRNIR 106
A +++G + G ++
Sbjct: 256 HAIVSVNGTCIEGHTVK 272
Score = 100 (40.3 bits), Expect = 0.00012, P = 0.00012
Identities = 24/84 (28%), Positives = 50/84 (59%)
Query: 29 MSQSQTK-LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNES 87
M + Q + L+VG LS ++ + + FS G K+I + +G + FV + N
Sbjct: 3 MDEDQPRTLYVGNLSRDVTEALILQVFSQIGPCKSCKMILDT-TGNDP-YCFVEFYENRH 60
Query: 88 ASSAQSAMDGQELNGRNIRVSFAN 111
A++A +AM+G+++ G++++V++A+
Sbjct: 61 AAAALAAMNGRKILGKDMKVNWAS 84
>UNIPROTKB|E2R1C1 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:AAEX03014924 EMBL:AAEX03014925
Ensembl:ENSCAFT00000024677 Uniprot:E2R1C1
Length = 435
Score = 158 (60.7 bits), Expect = 8.8e-11, P = 8.8e-11
Identities = 34/95 (35%), Positives = 54/95 (56%)
Query: 18 PKASLINAVR--FMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSR 75
P A AVR M +S +FVG + + + LK+ FS G + +++ +RE+GK +
Sbjct: 2 PGAMSSLAVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPK 61
Query: 76 GFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 110
G+GF Y E+A SA ++G+E +GR +RV A
Sbjct: 62 GYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 96
>ZFIN|ZDB-GENE-040426-1547 [details] [associations]
symbol:tial1 "TIA1 cytotoxic granule-associated
RNA binding protein-like 1" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1547 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00680000099967 EMBL:BX530079
IPI:IPI00920337 ProteinModelPortal:E9QJJ0
Ensembl:ENSDART00000135321 ArrayExpress:E9QJJ0 Bgee:E9QJJ0
Uniprot:E9QJJ0
Length = 389
Score = 157 (60.3 bits), Expect = 9.0e-11, P = 9.0e-11
Identities = 32/80 (40%), Positives = 51/80 (63%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95
+FVG LS ++ AF+ FG I++A+V+ + +GKS+G+GFV++ + A +A M
Sbjct: 117 VFVGDLSPEITTDDIRAAFAPFGKISDARVVKDMTTGKSKGYGFVSFYNKLDAENAIVHM 176
Query: 96 DGQELNGRNIRVSFANDRPP 115
GQ L GR IR ++A +PP
Sbjct: 177 GGQWLGGRQIRTNWATRKPP 196
Score = 109 (43.4 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 25/102 (24%), Positives = 49/102 (48%)
Query: 13 QNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESG 72
Q+ A + V S ++ GG+ G + +++ FS FG I E +V E+
Sbjct: 202 QDNSAKQLRFDEVVNQSSPQNCTVYCGGIQSGLTEHLMRQTFSPFGQIMEIRVFPEK--- 258
Query: 73 KSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRP 114
G+ F+ + S+ESA+ A +++G + G ++ + + P
Sbjct: 259 ---GYSFIRFSSHESAAHAIVSVNGTTIEGHVVKCYWGKESP 297
>UNIPROTKB|D6RBQ9 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 EMBL:AC124016 HGNC:HGNC:5036 ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 IPI:IPI00963980
ProteinModelPortal:D6RBQ9 SMR:D6RBQ9 Ensembl:ENST00000503822
ArrayExpress:D6RBQ9 Bgee:D6RBQ9 Uniprot:D6RBQ9
Length = 155
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASS 90
+ + K+F+GGLSW T LK+ FS FG++ + + + +G+SRGFGFV + +ES
Sbjct: 75 EDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDK 134
Query: 91 AQSAMDGQELNGRNI 105
+ +LNG+ I
Sbjct: 135 VMDQKE-HKLNGKVI 148
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 36 LFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM 95
++VG + T + L FS+ G I +++ +RE+G+ RGF F+ + SA A M
Sbjct: 7 VYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQM 66
Query: 96 DGQELNGRNIRVSFAN 111
+G E NGR +RV+ AN
Sbjct: 67 NGAEFNGRPLRVNLAN 82
>UNIPROTKB|F1P5I0 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00971390 Ensembl:ENSGALT00000015053 Uniprot:F1P5I0
Length = 288
Score = 153 (58.9 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 33/79 (41%), Positives = 49/79 (62%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
KLF+GGLS+ T D SL+E F +G +T+ V+ + ++ +SRGFGFVTY E +A SA
Sbjct: 10 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSA 69
Query: 95 MDGQELNGRNIRVSFANDR 113
+++GR + A R
Sbjct: 70 RP-HKVDGRVVEPKRAVSR 87
Score = 140 (54.3 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
K+FVGG+ T++ +L+E F +G I +V+ +R+SGK RGF FVT+D +++
Sbjct: 101 KIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV-V 159
Query: 95 MDGQELNGRNIRVSFA 110
+NG N V A
Sbjct: 160 QKYHTINGHNCEVKKA 175
>FB|FBgn0031883 [details] [associations]
symbol:CG11266 species:7227 "Drosophila melanogaster"
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014134
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GO:GO:0000381 HSSP:Q60900
TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 UniGene:Dm.7322 GeneID:33989
KEGG:dme:Dmel_CG11266 FlyBase:FBgn0031883 ChiTaRS:CG11266
GenomeRNAi:33989 NextBio:786302 EMBL:AY051860 RefSeq:NP_609095.1
RefSeq:NP_723243.1 SMR:Q9VM49 IntAct:Q9VM49 MINT:MINT-745605
STRING:Q9VM49 EnsemblMetazoa:FBtr0089636 EnsemblMetazoa:FBtr0089640
UCSC:CG11266-RA InParanoid:Q9VM49 Uniprot:Q9VM49
Length = 594
Score = 159 (61.0 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 39/112 (34%), Positives = 64/112 (57%)
Query: 7 LGM-LVRQNGQAPKASLINAV-RFMSQSQT---KLFVGGLSWGTDDSSLKEAFSNFGDIT 61
LG+ ++ Q+ QA K L NA F +S T +L+VG L + + L+ F FG I
Sbjct: 303 LGVPIMVQHTQAEKNRLQNAAPAFQPKSHTGPMRLYVGSLHFNITEDMLRGIFEPFGKID 362
Query: 62 EAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 113
++I + E+G+S+G+GF+TY + + A A ++G EL GR ++V +R
Sbjct: 363 AIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFELAGRLMKVGNVTER 414
>UNIPROTKB|D6RAF8 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956 Pfam:PF08143
IPI:IPI00965952 ProteinModelPortal:D6RAF8 SMR:D6RAF8
Ensembl:ENST00000507010 ArrayExpress:D6RAF8 Bgee:D6RAF8
Uniprot:D6RAF8
Length = 221
Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASS 90
+ + K+F+GGLSW T LK+ FS FG++ + + + +G+SRGFGFV + +ES
Sbjct: 94 REEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDK 153
Query: 91 AQSAMDGQELNGRNI 105
+ +LNG+ I
Sbjct: 154 VMDQKE-HKLNGKVI 167
>TAIR|locus:2075860 [details] [associations]
symbol:U11/U12-31K "U11/U12-31K" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IMP]
[GO:0032502 "developmental process" evidence=IMP] [GO:0051302
"regulation of cell division" evidence=IMP] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0005634 EMBL:CP002686 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC011560
GO:GO:0030529 Gene3D:4.10.60.10 GO:GO:0000398 GO:GO:0032502
GO:GO:0051302 HSSP:O08583 KO:K13154 OMA:YRYSSVA EMBL:BT015938
EMBL:BT021922 IPI:IPI00529628 RefSeq:NP_187651.1 UniGene:At.39936
ProteinModelPortal:Q9CAE4 SMR:Q9CAE4 STRING:Q9CAE4
EnsemblPlants:AT3G10400.1 GeneID:820203 KEGG:ath:AT3G10400
TAIR:At3g10400 InParanoid:Q9CAE4 PhylomeDB:Q9CAE4
ProtClustDB:CLSN2684009 Genevestigator:Q9CAE4 Uniprot:Q9CAE4
Length = 261
Score = 151 (58.2 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 31/84 (36%), Positives = 48/84 (57%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
++ S++ L+V L + +S + FS FG + V+ +R + +SRG FV Y S E A
Sbjct: 52 LAPSKSTLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDA 111
Query: 89 SSAQSAMDGQELNGRNIRVSFAND 112
+ A +MD + LNGR + VS A D
Sbjct: 112 AKAARSMDAKILNGRKLTVSIAAD 135
WARNING: HSPs involving 1548 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.130 0.367 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 147 116 0.00091 102 3 11 23 0.36 31
29 0.45 32
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1798
No. of states in DFA: 535 (57 KB)
Total size of DFA: 103 KB (2071 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 11.67u 0.13s 11.80t Elapsed: 00:00:01
Total cpu time: 11.69u 0.13s 11.82t Elapsed: 00:00:01
Start: Mon May 20 16:19:48 2013 End: Mon May 20 16:19:49 2013
WARNINGS ISSUED: 2