BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032106
(147 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WM8|A Chain A, Crystal Structure Of Human Magnesium-Dependent Phosphatase
1 Of The Haloacid Dehalogenase Superfamily (Mgc5987)
Length = 187
Score = 100 bits (248), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 71/115 (61%), Gaps = 2/115 (1%)
Query: 4 LYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHF 63
LYP +L L+ G+ A ASR+ + AN LE ++ FV +EI+ K HF
Sbjct: 69 LYPEVPEVLKRLQSLGVPGAAASRTSEIEGANQLLELFDLFRYFVHREIYPG--SKITHF 126
Query: 64 QRIHSRTGVPFNSMLFFDDEDRNIDAVSKMGVTGILVGNGVNLGALRQGLTKFSQ 118
+R+ +TG+PF+ M+FFDDE RNI VSK+GVT I + NG+NL L QGL F++
Sbjct: 127 ERLQQKTGIPFSQMIFFDDERRNIVDVSKLGVTCIHIQNGMNLQTLSQGLETFAK 181
>pdb|1U7O|A Chain A, Magnesium Dependent Phosphatase 1 (Mdp-1)
pdb|1U7P|A Chain A, X-Ray Crystal Structure Of The Hypothetical
Phosphotyrosine Phosphatase Mdp-1 Of The Haloacid
Dehalogenase Superfamily
pdb|1U7P|B Chain B, X-Ray Crystal Structure Of The Hypothetical
Phosphotyrosine Phosphatase Mdp-1 Of The Haloacid
Dehalogenase Superfamily
pdb|1U7P|C Chain C, X-Ray Crystal Structure Of The Hypothetical
Phosphotyrosine Phosphatase Mdp-1 Of The Haloacid
Dehalogenase Superfamily
pdb|1U7P|D Chain D, X-Ray Crystal Structure Of The Hypothetical
Phosphotyrosine Phosphatase Mdp-1 Of The Haloacid
Dehalogenase Superfamily
Length = 164
Score = 100 bits (248), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 72/115 (62%), Gaps = 2/115 (1%)
Query: 4 LYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHF 63
LYP +L L+ G+ VA ASR+ AN LE ++ F+ +EI+ K HF
Sbjct: 47 LYPEVPEVLGRLQSLGVPVAAASRTSEIQGANQLLELFDLGKYFIQREIYPG--SKVTHF 104
Query: 64 QRIHSRTGVPFNSMLFFDDEDRNIDAVSKMGVTGILVGNGVNLGALRQGLTKFSQ 118
+R+H +TGVPF+ M+FFDDE+RNI V ++GVT I + +G++L L QGL F++
Sbjct: 105 ERLHHKTGVPFSQMVFFDDENRNIIDVGRLGVTCIHIRDGMSLQTLTQGLETFAK 159
>pdb|4HB2|C Chain C, Crystal Structure Of Crm1-ran-ranbp1
Length = 1023
Score = 34.3 bits (77), Expect = 0.025, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 97 GIL-VGNGVNLGALRQGLTKFSQNWNTSQKNKQKWISKFSQKPDSSEKIDQ 146
GIL N +++ L Q ++ F Q QK Q+ ++KF PD+ +K DQ
Sbjct: 5 GILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQ 55
>pdb|4GPT|C Chain C, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|C Chain C, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
Length = 1060
Score = 34.3 bits (77), Expect = 0.025, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 97 GIL-VGNGVNLGALRQGLTKFSQNWNTSQKNKQKWISKFSQKPDSSEKIDQ 146
GIL N +++ L Q ++ F Q QK Q+ ++KF PD+ +K DQ
Sbjct: 5 GILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQ 55
>pdb|4HB4|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 1023
Score = 34.3 bits (77), Expect = 0.025, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 97 GIL-VGNGVNLGALRQGLTKFSQNWNTSQKNKQKWISKFSQKPDSSEKIDQ 146
GIL N +++ L Q ++ F Q QK Q+ ++KF PD+ +K DQ
Sbjct: 5 GILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQ 55
>pdb|4HB0|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
Length = 1023
Score = 34.3 bits (77), Expect = 0.025, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 97 GIL-VGNGVNLGALRQGLTKFSQNWNTSQKNKQKWISKFSQKPDSSEKIDQ 146
GIL N +++ L Q ++ F Q QK Q+ ++KF PD+ +K DQ
Sbjct: 5 GILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQ 55
>pdb|4HAZ|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
Length = 1023
Score = 34.3 bits (77), Expect = 0.025, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 97 GIL-VGNGVNLGALRQGLTKFSQNWNTSQKNKQKWISKFSQKPDSSEKIDQ 146
GIL N +++ L Q ++ F Q QK Q+ ++KF PD+ +K DQ
Sbjct: 5 GILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQ 55
>pdb|4HAY|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
Length = 1023
Score = 34.3 bits (77), Expect = 0.025, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 97 GIL-VGNGVNLGALRQGLTKFSQNWNTSQKNKQKWISKFSQKPDSSEKIDQ 146
GIL N +++ L Q ++ F Q QK Q+ ++KF PD+ +K DQ
Sbjct: 5 GILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQ 55
>pdb|4HAX|C Chain C, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
Length = 1023
Score = 34.3 bits (77), Expect = 0.025, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 97 GIL-VGNGVNLGALRQGLTKFSQNWNTSQKNKQKWISKFSQKPDSSEKIDQ 146
GIL N +++ L Q ++ F Q QK Q+ ++KF PD+ +K DQ
Sbjct: 5 GILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQ 55
>pdb|4HAW|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
Length = 1023
Score = 34.3 bits (77), Expect = 0.025, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 97 GIL-VGNGVNLGALRQGLTKFSQNWNTSQKNKQKWISKFSQKPDSSEKIDQ 146
GIL N +++ L Q ++ F Q QK Q+ ++KF PD+ +K DQ
Sbjct: 5 GILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQ 55
>pdb|4HAT|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|C Chain C, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|C Chain C, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
Length = 1023
Score = 34.3 bits (77), Expect = 0.025, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 97 GIL-VGNGVNLGALRQGLTKFSQNWNTSQKNKQKWISKFSQKPDSSEKIDQ 146
GIL N +++ L Q ++ F Q QK Q+ ++KF PD+ +K DQ
Sbjct: 5 GILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQ 55
>pdb|4HB3|C Chain C, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
Length = 1023
Score = 34.3 bits (77), Expect = 0.026, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 97 GIL-VGNGVNLGALRQGLTKFSQNWNTSQKNKQKWISKFSQKPDSSEKIDQ 146
GIL N +++ L Q ++ F Q QK Q+ ++KF PD+ +K DQ
Sbjct: 5 GILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQ 55
>pdb|3M1I|C Chain C, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 1049
Score = 34.3 bits (77), Expect = 0.026, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 97 GIL-VGNGVNLGALRQGLTKFSQNWNTSQKNKQKWISKFSQKPDSSEKIDQ 146
GIL N +++ L Q ++ F Q QK Q+ ++KF PD+ +K DQ
Sbjct: 5 GILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQ 55
>pdb|3VYC|A Chain A, Crystal Structure Of Unliganded Saccharomyces Cerevisiae
Crm1 (Xpo1p)
Length = 1033
Score = 34.3 bits (77), Expect = 0.027, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 97 GIL-VGNGVNLGALRQGLTKFSQNWNTSQKNKQKWISKFSQKPDSSEKIDQ 146
GIL N +++ L Q ++ F Q QK Q+ ++KF PD+ +K DQ
Sbjct: 3 GILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQ 53
>pdb|3SLR|A Chain A, Crystal Structure Of N-Terminal Part Of The Protein Bf1531
From Bacteroides Fragilis Containing Phosphatase Domain
Complexed With Mg
Length = 387
Score = 33.9 bits (76), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 11/74 (14%)
Query: 15 LKDKGIDVAVASRSPSPDIANTF------LEKLNIKSMFVAKEIFSSWSHKTDHFQRIHS 68
LK++GI +AV S++ F + KL+ ++FVA +W +K D+ + I
Sbjct: 268 LKNRGIIIAVCSKNNEGKAKEPFERNPEXVLKLDDIAVFVA-----NWENKADNIRTIQR 322
Query: 69 RTGVPFNSMLFFDD 82
+ F+S +F DD
Sbjct: 323 TLNIGFDSXVFLDD 336
>pdb|2B0C|A Chain A, The Crystal Structure Of The Putative Phosphatase From
Escherichia Coli
Length = 206
Score = 33.9 bits (76), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 7/103 (6%)
Query: 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFSSWS----- 57
+L P I+H L+++G V V S + + TF + + A I+ S
Sbjct: 91 ALRPEVIAIMHKLREQGHRVVVLSNTNR--LHTTFWPEEYPEIRDAADHIYLSQDLGMRK 148
Query: 58 HKTDHFQRIHSRTGVPFNSMLFFDDEDRNIDAVSKMGVTGILV 100
+ +Q + G + +FFDD NI+ +++G+T ILV
Sbjct: 149 PEARIYQHVLQAEGFSPSDTVFFDDNADNIEGANQLGITSILV 191
>pdb|2HSZ|A Chain A, Crystal Structure Of A Predicted Phosphoglycolate
Phosphatase (hs_0176) From Haemophilus Somnus 129pt At
1.90 A Resolution
pdb|2HSZ|B Chain B, Crystal Structure Of A Predicted Phosphoglycolate
Phosphatase (hs_0176) From Haemophilus Somnus 129pt At
1.90 A Resolution
Length = 243
Score = 33.1 bits (74), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 43/108 (39%), Gaps = 6/108 (5%)
Query: 4 LYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFSSWSHKTDH- 62
LYP+ K L ALK +G +AV + P+ + L I +F S H
Sbjct: 115 LYPNVKETLEALKAQGYILAVVTNKPTKHV-QPILTAFGIDHLFSEXLGGQSLPEIKPHP 173
Query: 63 --FQRIHSRTGVPFNSMLFFDDEDRNIDAVSKMG--VTGILVGNGVNL 106
F + + G+ +LF D +I A G V G+ G N+
Sbjct: 174 APFYYLCGKFGLYPKQILFVGDSQNDIFAAHSAGCAVVGLTYGYNYNI 221
>pdb|4G9B|A Chain A, Crystal Structure Of Beta-Phosphoglucomutase Homolog From
Escherichia Coli, Target Efi-501172, With Bound Mg, Open
Lid
Length = 243
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 6/106 (5%)
Query: 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFSSWSHK--- 59
++ P + +L L+ + I V +AS S + A T L L ++ F S +
Sbjct: 95 AVLPGIRSLLADLRAQQISVGLASVSLN---APTILAALELREFFTFCADASQLKNSKPD 151
Query: 60 TDHFQRIHSRTGVPFNSMLFFDDEDRNIDAVSKMGVTGILVGNGVN 105
+ F + GVP + + +D IDA++ G+ + +G G+
Sbjct: 152 PEIFLAACAGLGVPPQACIGIEDAQAGIDAINASGMRSVGIGAGLT 197
>pdb|3C4A|A Chain A, Crystal Structure Of Viod Hydroxylase In Complex With Fad
From Chromobacterium Violaceum. Northeast Structural
Genomics Consortium Target Cvr158
Length = 381
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 9 KGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHF 63
+G++HAL+DK +A R SP + + L + + +A + +HKT HF
Sbjct: 98 RGLVHALRDKCRSQGIAIRFESPLLEHGELPLADYDLVVLANGV----NHKTAHF 148
>pdb|2RCY|A Chain A, Crystal Structure Of Plasmodium Falciparum Pyrroline
Carboxylate Reductase (Mal13p1.284) With Nadp Bound
pdb|2RCY|B Chain B, Crystal Structure Of Plasmodium Falciparum Pyrroline
Carboxylate Reductase (Mal13p1.284) With Nadp Bound
pdb|2RCY|C Chain C, Crystal Structure Of Plasmodium Falciparum Pyrroline
Carboxylate Reductase (Mal13p1.284) With Nadp Bound
pdb|2RCY|D Chain D, Crystal Structure Of Plasmodium Falciparum Pyrroline
Carboxylate Reductase (Mal13p1.284) With Nadp Bound
pdb|2RCY|E Chain E, Crystal Structure Of Plasmodium Falciparum Pyrroline
Carboxylate Reductase (Mal13p1.284) With Nadp Bound
Length = 262
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 7 HAKGILHALKDKGIDVAVASRSPSPDIANTFLEKL 41
++ GI+H +K+K D+A A P F+E L
Sbjct: 146 NSCGIIHEIKEKDXDIATAISGCGPAYVYLFIESL 180
>pdb|1KD6|A Chain A, Solution Structure Of The Eukaryotic Pore-Forming
Cytolysin Equinatoxin Ii
Length = 179
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 16/131 (12%)
Query: 21 DVAVA---SRSPSPDIANTFLEKL-NIK---SMFVAKEIFSSWSHKTDHFQRIHSRTGVP 73
DVA A S S DI T LE L N+K ++ V E +W+ +F+ S +P
Sbjct: 3 DVAGAVIDGASLSFDILKTVLEALGNVKRKIAVGVDNESGKTWTALNTYFRSGTSDIVLP 62
Query: 74 FN-----SMLFFDDEDRNIDAVSKMGVTGILVGNGVNLGALRQGLTKFSQNWNTSQKNKQ 128
++L+ +DR A +GV L+ +G L L + NW ++ N +
Sbjct: 63 HKVPHGKALLYNGQKDRGPVATGAVGVLAYLMSDGNTLAVLFS--VPYDYNWYSNWWNVR 120
Query: 129 KWISKFSQKPD 139
I K ++ D
Sbjct: 121 --IYKGKRRAD 129
>pdb|1IAZ|A Chain A, Equinatoxin Ii
pdb|1IAZ|B Chain B, Equinatoxin Ii
Length = 179
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 16/131 (12%)
Query: 21 DVAVA---SRSPSPDIANTFLEKL-NIK---SMFVAKEIFSSWSHKTDHFQRIHSRTGVP 73
DVA A S S DI T LE L N+K ++ V E +W+ +F+ S +P
Sbjct: 3 DVAGAVIDGASLSFDILKTVLEALGNVKRKIAVGVDNESGKTWTALNTYFRSGTSDIVLP 62
Query: 74 FN-----SMLFFDDEDRNIDAVSKMGVTGILVGNGVNLGALRQGLTKFSQNWNTSQKNKQ 128
++L+ +DR A +GV L+ +G L L + NW ++ N +
Sbjct: 63 HKVPHGKALLYNGQKDRGPVATGAVGVLAYLMSDGNTLAVLFS--VPYDYNWYSNWWNVR 120
Query: 129 KWISKFSQKPD 139
I K ++ D
Sbjct: 121 --IYKGKRRAD 129
>pdb|1TZQ|A Chain A, Crystal Structure Of The Equinatoxin Ii 8-69 Double
Cysteine Mutant
Length = 175
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 13/126 (10%)
Query: 23 AVASRSPSPDIANTFLEKL-NIK---SMFVAKEIFSSWSHKTDHFQRIHSRTGVPFN--- 75
+ S S DI T LE L N+K ++ V E +W+ +F+ S +P
Sbjct: 4 CIDGASLSFDILKTVLEALGNVKRKIAVGVDNESGKTWTALNTYFRSGTSDIVLPHKVPH 63
Query: 76 --SMLFFDDEDRNIDAVSKMGVTGILVGNGVNLGALRQGLTKFSQNWNTSQKNKQKWISK 133
++L+ +DR A +GV L+ +G L L + NW ++ N + I K
Sbjct: 64 GCALLYNGQKDRGPVATGAVGVLAYLMSDGNTLAVLFS--VPYDYNWYSNWWNVR--IYK 119
Query: 134 FSQKPD 139
++ D
Sbjct: 120 GKRRAD 125
>pdb|2YY6|A Chain A, Crystal Structure Of The Phosphoglycolate Phosphatase From
Aquifex Aeolicus Vf5
pdb|2YY6|B Chain B, Crystal Structure Of The Phosphoglycolate Phosphatase From
Aquifex Aeolicus Vf5
Length = 213
Score = 26.6 bits (57), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 4/93 (4%)
Query: 5 YPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMF---VAKEIFSSWSHKTD 61
YP L ALK KG +AV S +++ L+ LN+ F V + F
Sbjct: 83 YPEIPYTLEALKSKGFKLAVVSNKLE-ELSKKILDILNLSGYFDLIVGGDTFGEKKPSPT 141
Query: 62 HFQRIHSRTGVPFNSMLFFDDEDRNIDAVSKMG 94
+ G L D D +I+A + G
Sbjct: 142 PVLKTLEILGEEPEKALIVGDTDADIEAGKRAG 174
>pdb|1NP3|A Chain A, Crystal Structure Of Class I Acetohydroxy Acid
Isomeroreductase From Pseudomonas Aeruginosa
pdb|1NP3|B Chain B, Crystal Structure Of Class I Acetohydroxy Acid
Isomeroreductase From Pseudomonas Aeruginosa
pdb|1NP3|C Chain C, Crystal Structure Of Class I Acetohydroxy Acid
Isomeroreductase From Pseudomonas Aeruginosa
pdb|1NP3|D Chain D, Crystal Structure Of Class I Acetohydroxy Acid
Isomeroreductase From Pseudomonas Aeruginosa
Length = 338
Score = 25.8 bits (55), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 8 AKGILHA--LKDKGIDVAVASRSPSPDIANT---FLEKLNIKSMFVAKEIFSSWSHKTDH 62
++G HA LKD G+DV V RS S +A L+ ++K+ A ++ + D
Sbjct: 26 SQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVADVKTAVAAADVVMILT--PDE 83
Query: 63 FQ 64
FQ
Sbjct: 84 FQ 85
>pdb|1HD0|A Chain A, Heterogeneous Nuclear Ribonucleoprotein D0 (Hnrnp D0
Rbd1), Nmr
pdb|1HD1|A Chain A, Heterogeneous Nuclear Ribonucleoprotein D0 (Hnrnp D0
Rbd1), Nmr
Length = 75
Score = 25.8 bits (55), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 19/27 (70%)
Query: 119 NWNTSQKNKQKWISKFSQKPDSSEKID 145
+W+T++K+ + + SKF + D + K+D
Sbjct: 8 SWDTTKKDLKDYFSKFGEVVDCTLKLD 34
>pdb|2C4N|A Chain A, Nagd From E.Coli K-12 Strain
Length = 250
Score = 25.8 bits (55), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
Query: 6 PHAKGILHALKDKGIDVAVASRSPS---PDIANTFLEKLNIKSMFVAKEIFSSWSHKTDH 62
P A LH + DKG+ + + + PS D+AN F + V +F + + T
Sbjct: 22 PGAAEFLHGIMDKGLPLVLLTNYPSQTGQDLANRFAT----AGVDVPDSVFYTSAMATAD 77
Query: 63 FQR 65
F R
Sbjct: 78 FLR 80
>pdb|2NYV|A Chain A, X-Ray Crystal Structure Of A Phosphoglycolate Phosphatase
From Aquifex Aeolicus
Length = 222
Score = 25.8 bits (55), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 4/93 (4%)
Query: 5 YPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMF---VAKEIFSSWSHKTD 61
YP L ALK KG +AV S +++ L+ LN+ F V + F
Sbjct: 85 YPEIPYTLEALKSKGFKLAVVSNKLE-ELSKKILDILNLSGYFDLIVGGDTFGEKKPSPT 143
Query: 62 HFQRIHSRTGVPFNSMLFFDDEDRNIDAVSKMG 94
+ G L D D +I+A + G
Sbjct: 144 PVLKTLEILGEEPEKALIVGDTDADIEAGKRAG 176
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,372,062
Number of Sequences: 62578
Number of extensions: 164902
Number of successful extensions: 494
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 461
Number of HSP's gapped (non-prelim): 39
length of query: 147
length of database: 14,973,337
effective HSP length: 90
effective length of query: 57
effective length of database: 9,341,317
effective search space: 532455069
effective search space used: 532455069
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)