Query 032106
Match_columns 147
No_of_seqs 119 out of 1218
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 09:40:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032106.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032106hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02770 haloacid dehalogenase 99.9 7.8E-22 1.7E-26 149.1 11.8 105 2-107 107-214 (248)
2 TIGR01428 HAD_type_II 2-haloal 99.9 1.2E-21 2.6E-26 142.9 11.2 102 3-105 92-196 (198)
3 PRK13288 pyrophosphatase PpaX; 99.9 2.9E-21 6.4E-26 142.5 11.0 104 3-107 82-188 (214)
4 TIGR01454 AHBA_synth_RP 3-amin 99.9 3.2E-21 6.8E-26 141.5 11.0 105 2-107 74-181 (205)
5 COG0546 Gph Predicted phosphat 99.9 4.3E-21 9.3E-26 142.7 10.9 103 2-105 88-193 (220)
6 TIGR01422 phosphonatase phosph 99.9 5.4E-21 1.2E-25 144.6 11.2 103 2-105 98-205 (253)
7 TIGR02253 CTE7 HAD superfamily 99.9 6.4E-21 1.4E-25 141.0 11.2 102 3-105 94-199 (221)
8 TIGR01449 PGP_bact 2-phosphogl 99.9 7.1E-21 1.5E-25 139.9 11.1 104 2-106 84-190 (213)
9 PRK13226 phosphoglycolate phos 99.8 7.8E-21 1.7E-25 142.0 10.8 103 2-105 94-199 (229)
10 TIGR01685 MDP-1 magnesium-depe 99.8 7.4E-21 1.6E-25 136.8 9.7 116 2-117 44-173 (174)
11 PRK10826 2-deoxyglucose-6-phos 99.8 1.5E-20 3.2E-25 139.6 11.3 104 2-106 91-197 (222)
12 PRK14988 GMP/IMP nucleotidase; 99.8 1.4E-20 3E-25 140.4 10.9 103 2-105 92-198 (224)
13 PF13419 HAD_2: Haloacid dehal 99.8 1.1E-20 2.5E-25 133.3 9.9 98 2-100 76-176 (176)
14 PLN03243 haloacid dehalogenase 99.8 1.7E-20 3.7E-25 142.9 11.2 98 3-101 109-209 (260)
15 PRK09456 ?-D-glucose-1-phospha 99.8 2.5E-20 5.4E-25 136.4 11.1 108 3-111 84-195 (199)
16 TIGR01990 bPGM beta-phosphoglu 99.8 1.6E-20 3.6E-25 135.1 9.8 96 3-101 87-185 (185)
17 TIGR03351 PhnX-like phosphonat 99.8 3.3E-20 7.2E-25 137.3 11.5 105 2-107 86-197 (220)
18 PLN02575 haloacid dehalogenase 99.8 3.3E-20 7.1E-25 147.3 11.9 103 3-106 216-321 (381)
19 PRK13478 phosphonoacetaldehyde 99.8 5.6E-20 1.2E-24 140.2 11.7 103 2-105 100-207 (267)
20 PLN02811 hydrolase 99.8 7E-20 1.5E-24 136.0 11.1 105 2-106 77-189 (220)
21 PRK11587 putative phosphatase; 99.8 9.8E-20 2.1E-24 135.0 11.2 102 2-105 82-186 (218)
22 PRK06769 hypothetical protein; 99.8 8.9E-20 1.9E-24 131.2 10.5 105 3-107 28-143 (173)
23 TIGR01509 HAD-SF-IA-v3 haloaci 99.8 1.1E-19 2.3E-24 130.3 10.6 97 2-100 84-183 (183)
24 PRK09449 dUMP phosphatase; Pro 99.8 1.3E-19 2.9E-24 134.4 10.8 100 2-103 94-198 (224)
25 TIGR02252 DREG-2 REG-2-like, H 99.8 1E-19 2.2E-24 133.2 9.4 95 3-99 105-203 (203)
26 TIGR02009 PGMB-YQAB-SF beta-ph 99.8 1.1E-19 2.5E-24 130.7 9.4 96 2-100 87-185 (185)
27 TIGR01656 Histidinol-ppas hist 99.8 1.8E-19 3.9E-24 126.3 10.2 101 3-103 27-147 (147)
28 TIGR02247 HAD-1A3-hyp Epoxide 99.8 1.7E-19 3.7E-24 132.8 9.3 103 3-105 94-200 (211)
29 TIGR02254 YjjG/YfnB HAD superf 99.8 3.3E-19 7.1E-24 131.7 10.7 102 2-105 96-202 (224)
30 PRK13223 phosphoglycolate phos 99.8 2.8E-19 6.2E-24 136.9 10.7 103 2-105 100-205 (272)
31 TIGR00213 GmhB_yaeD D,D-heptos 99.8 4.5E-19 9.8E-24 127.7 10.9 101 3-105 26-155 (176)
32 TIGR01691 enolase-ppase 2,3-di 99.8 4.6E-19 9.9E-24 132.0 11.1 102 3-105 95-200 (220)
33 PLN02940 riboflavin kinase 99.8 4.1E-19 8.8E-24 141.9 10.8 103 2-105 92-198 (382)
34 PRK13222 phosphoglycolate phos 99.8 7.9E-19 1.7E-23 130.0 11.5 103 2-105 92-197 (226)
35 PLN02779 haloacid dehalogenase 99.8 9.4E-19 2E-23 135.0 11.5 103 3-106 144-251 (286)
36 PRK13225 phosphoglycolate phos 99.8 1.3E-18 2.9E-23 133.4 12.1 104 3-107 142-245 (273)
37 COG0637 Predicted phosphatase/ 99.8 6E-19 1.3E-23 131.4 9.9 102 3-105 86-190 (221)
38 COG1011 Predicted hydrolase (H 99.8 8.7E-19 1.9E-23 129.9 10.7 100 3-104 99-202 (229)
39 TIGR01261 hisB_Nterm histidino 99.8 7.8E-19 1.7E-23 125.0 9.9 99 3-103 29-149 (161)
40 TIGR01662 HAD-SF-IIIA HAD-supe 99.8 1.4E-18 3E-23 119.3 10.4 98 3-101 25-131 (132)
41 PF12689 Acid_PPase: Acid Phos 99.8 2.6E-18 5.6E-23 122.8 12.1 116 2-119 44-169 (169)
42 PRK10725 fructose-1-P/6-phosph 99.8 1E-18 2.3E-23 126.2 9.9 96 3-101 88-186 (188)
43 PRK10563 6-phosphogluconate ph 99.8 1.1E-18 2.3E-23 129.3 9.9 98 2-103 87-188 (221)
44 PRK08942 D,D-heptose 1,7-bisph 99.8 3.2E-18 7E-23 123.6 11.6 102 3-106 29-152 (181)
45 TIGR01993 Pyr-5-nucltdase pyri 99.8 1.8E-18 3.9E-23 124.9 9.3 94 3-100 84-184 (184)
46 TIGR01668 YqeG_hyp_ppase HAD s 99.8 1E-17 2.2E-22 120.2 11.4 99 3-107 43-142 (170)
47 PRK10748 flavin mononucleotide 99.8 5.9E-18 1.3E-22 127.2 9.8 96 2-104 112-211 (238)
48 PLN02919 haloacid dehalogenase 99.7 3.5E-17 7.5E-22 144.3 12.6 104 3-107 161-268 (1057)
49 COG2179 Predicted hydrolase of 99.7 7.4E-17 1.6E-21 113.5 10.6 112 2-120 45-157 (175)
50 TIGR01549 HAD-SF-IA-v1 haloaci 99.7 6.5E-17 1.4E-21 113.4 9.0 88 3-94 64-154 (154)
51 PRK06698 bifunctional 5'-methy 99.7 8.9E-17 1.9E-21 131.2 10.9 101 2-106 329-432 (459)
52 TIGR01664 DNA-3'-Pase DNA 3'-p 99.7 7E-17 1.5E-21 115.5 9.0 96 4-100 43-161 (166)
53 TIGR01548 HAD-SF-IA-hyp1 haloa 99.7 1E-16 2.3E-21 117.0 9.6 88 4-93 107-197 (197)
54 PHA02530 pseT polynucleotide k 99.7 1.7E-16 3.6E-21 122.6 10.4 102 2-104 186-299 (300)
55 KOG3085 Predicted hydrolase (H 99.7 1.2E-16 2.5E-21 119.4 8.9 100 4-105 114-217 (237)
56 PHA02597 30.2 hypothetical pro 99.7 4.4E-16 9.5E-21 113.5 9.9 99 3-105 74-178 (197)
57 PRK05446 imidazole glycerol-ph 99.7 1.1E-15 2.4E-20 120.7 12.5 110 3-114 30-162 (354)
58 TIGR00338 serB phosphoserine p 99.6 1.5E-15 3.2E-20 112.3 10.7 97 2-99 84-193 (219)
59 TIGR01681 HAD-SF-IIIC HAD-supe 99.6 8.9E-16 1.9E-20 105.4 8.2 88 4-92 30-126 (128)
60 TIGR01493 HAD-SF-IA-v2 Haloaci 99.6 3.5E-16 7.5E-21 111.9 5.4 83 3-93 90-175 (175)
61 cd01427 HAD_like Haloacid deha 99.6 6.3E-15 1.4E-19 99.5 9.6 97 3-100 24-139 (139)
62 TIGR01491 HAD-SF-IB-PSPlk HAD- 99.6 5.2E-15 1.1E-19 107.6 9.5 101 3-104 80-193 (201)
63 TIGR01672 AphA HAD superfamily 99.6 1.3E-14 2.8E-19 109.1 10.6 97 3-106 114-216 (237)
64 TIGR01670 YrbI-phosphatas 3-de 99.6 1.4E-14 2.9E-19 102.4 8.9 86 11-104 36-121 (154)
65 TIGR01686 FkbH FkbH-like domai 99.6 2.7E-14 5.8E-19 111.8 10.7 91 3-96 31-125 (320)
66 KOG3109 Haloacid dehalogenase- 99.6 2.9E-14 6.2E-19 104.4 10.0 116 4-122 101-226 (244)
67 TIGR01452 PGP_euk phosphoglyco 99.6 6.5E-15 1.4E-19 113.1 6.9 103 4-107 144-253 (279)
68 TIGR02726 phenyl_P_delta pheny 99.6 2E-14 4.3E-19 103.1 8.6 84 10-100 41-124 (169)
69 smart00577 CPDc catalytic doma 99.6 5.7E-15 1.2E-19 103.7 5.4 91 3-98 45-139 (148)
70 PRK11133 serB phosphoserine ph 99.5 1.3E-13 2.8E-18 108.0 10.4 96 3-99 181-289 (322)
71 TIGR01458 HAD-SF-IIA-hyp3 HAD- 99.5 2E-14 4.4E-19 109.3 5.3 101 4-105 121-228 (257)
72 PRK11009 aphA acid phosphatase 99.5 2.6E-13 5.6E-18 102.1 11.0 98 2-106 113-216 (237)
73 KOG2914 Predicted haloacid-hal 99.5 1.3E-13 2.9E-18 102.4 9.1 100 2-102 91-197 (222)
74 PF00702 Hydrolase: haloacid d 99.5 1.5E-13 3.2E-18 100.5 9.2 87 3-94 127-215 (215)
75 PLN02954 phosphoserine phospha 99.5 4.1E-13 9E-18 99.5 11.6 97 2-101 83-196 (224)
76 TIGR01489 DKMTPPase-SF 2,3-dik 99.5 3E-13 6.5E-18 97.2 9.1 91 3-97 72-185 (188)
77 PRK09484 3-deoxy-D-manno-octul 99.5 3.1E-13 6.6E-18 98.0 8.7 84 10-101 55-138 (183)
78 COG0241 HisB Histidinol phosph 99.5 6.6E-13 1.4E-17 95.7 9.6 101 3-105 31-153 (181)
79 PRK09552 mtnX 2-hydroxy-3-keto 99.4 5.4E-13 1.2E-17 99.0 8.5 94 2-97 73-183 (219)
80 TIGR01459 HAD-SF-IIA-hyp4 HAD- 99.4 3.2E-13 6.8E-18 101.8 6.3 95 5-101 140-241 (242)
81 PRK13582 thrH phosphoserine ph 99.4 1.3E-12 2.9E-17 95.5 8.9 94 3-98 68-168 (205)
82 TIGR01490 HAD-SF-IB-hyp1 HAD-s 99.4 4.2E-12 9.1E-17 92.6 9.8 99 2-101 86-198 (202)
83 TIGR01457 HAD-SF-IIA-hyp2 HAD- 99.4 1.2E-11 2.7E-16 93.6 11.7 51 56-106 177-228 (249)
84 PF13242 Hydrolase_like: HAD-h 99.3 3.7E-12 8E-17 79.5 6.0 53 55-107 2-55 (75)
85 TIGR03333 salvage_mtnX 2-hydro 99.3 7.5E-12 1.6E-16 92.6 8.2 92 3-95 70-177 (214)
86 TIGR01663 PNK-3'Pase polynucle 99.3 9.3E-12 2E-16 102.9 9.1 90 4-95 198-305 (526)
87 PRK10444 UMP phosphatase; Prov 99.3 2E-11 4.4E-16 92.5 10.2 52 56-107 173-225 (248)
88 TIGR01544 HAD-SF-IE haloacid d 99.3 3.3E-11 7.1E-16 92.4 10.7 114 3-121 121-258 (277)
89 PTZ00445 p36-lilke protein; Pr 99.3 2.1E-11 4.7E-16 89.4 8.5 100 4-103 76-207 (219)
90 TIGR01488 HAD-SF-IB Haloacid D 99.3 2.4E-11 5.3E-16 86.6 8.7 90 3-93 73-177 (177)
91 PLN02645 phosphoglycolate phos 99.2 1.5E-11 3.3E-16 96.0 6.3 100 8-107 175-281 (311)
92 TIGR02244 HAD-IG-Ncltidse HAD 99.2 6.2E-11 1.4E-15 93.4 9.7 99 3-103 184-325 (343)
93 TIGR02137 HSK-PSP phosphoserin 99.2 1.6E-10 3.5E-15 85.1 10.5 96 3-103 68-173 (203)
94 COG4229 Predicted enolase-phos 99.2 1.3E-10 2.7E-15 83.4 8.5 103 2-105 102-208 (229)
95 TIGR01525 ATPase-IB_hvy heavy 99.2 2.1E-10 4.7E-15 95.8 10.7 86 2-96 383-469 (556)
96 COG0560 SerB Phosphoserine pho 99.2 2.6E-10 5.7E-15 84.6 9.7 100 2-102 76-188 (212)
97 TIGR01459 HAD-SF-IIA-hyp4 HAD- 99.2 3.9E-10 8.5E-15 84.9 10.7 91 2-95 23-116 (242)
98 PF09419 PGP_phosphatase: Mito 99.2 2.3E-10 5.1E-15 81.7 8.7 96 2-104 58-167 (168)
99 COG0647 NagD Predicted sugar p 99.1 1E-09 2.2E-14 83.9 11.1 52 56-107 189-241 (269)
100 TIGR01512 ATPase-IB2_Cd heavy 99.1 4.5E-10 9.7E-15 93.6 9.0 85 2-95 361-446 (536)
101 KOG3040 Predicted sugar phosph 99.1 1.2E-09 2.7E-14 79.9 8.8 48 56-103 180-228 (262)
102 TIGR02251 HIF-SF_euk Dullard-l 99.0 3.3E-10 7.1E-15 80.7 5.0 110 4-119 43-156 (162)
103 COG1778 Low specificity phosph 99.0 6.1E-10 1.3E-14 78.0 5.9 82 11-99 43-124 (170)
104 TIGR01511 ATPase-IB1_Cu copper 99.0 3.3E-09 7.1E-14 88.9 10.0 85 2-96 404-488 (562)
105 PF08645 PNK3P: Polynucleotide 98.9 3.2E-09 6.9E-14 75.5 7.0 94 5-98 31-153 (159)
106 PRK10671 copA copper exporting 98.9 8.2E-09 1.8E-13 90.0 10.9 87 2-97 649-735 (834)
107 PRK08238 hypothetical protein; 98.9 1.4E-08 3E-13 83.6 11.0 94 4-105 73-169 (479)
108 TIGR01460 HAD-SF-IIA Haloacid 98.9 2E-09 4.3E-14 80.9 5.3 92 11-103 137-236 (236)
109 KOG1615 Phosphoserine phosphat 98.9 8.1E-09 1.7E-13 74.8 6.9 95 2-100 87-198 (227)
110 KOG2882 p-Nitrophenyl phosphat 98.8 4.7E-09 1E-13 80.5 5.2 102 5-107 167-275 (306)
111 PF06888 Put_Phosphatase: Puta 98.8 5E-08 1.1E-12 73.3 9.6 104 3-107 71-203 (234)
112 COG4087 Soluble P-type ATPase 98.8 1.5E-07 3.3E-12 64.2 10.5 97 3-107 30-126 (152)
113 PF12710 HAD: haloacid dehalog 98.8 5.8E-08 1.3E-12 69.8 8.8 84 6-91 92-192 (192)
114 PRK10530 pyridoxal phosphate ( 98.8 4.6E-08 1E-12 74.3 8.6 92 5-96 139-237 (272)
115 TIGR01482 SPP-subfamily Sucros 98.7 2.7E-07 5.8E-12 68.2 10.4 44 56-99 147-190 (225)
116 PRK11033 zntA zinc/cadmium/mer 98.7 2.2E-07 4.7E-12 80.3 11.3 86 3-99 568-653 (741)
117 TIGR01522 ATPase-IIA2_Ca golgi 98.7 1.6E-07 3.5E-12 82.5 9.8 93 3-98 528-641 (884)
118 PRK01158 phosphoglycolate phos 98.6 4.5E-07 9.7E-12 67.3 10.6 43 56-98 155-197 (230)
119 COG4996 Predicted phosphatase 98.6 8.1E-07 1.8E-11 60.8 10.5 88 3-93 41-135 (164)
120 TIGR01487 SPP-like sucrose-pho 98.6 4E-07 8.7E-12 67.1 10.0 97 3-100 18-189 (215)
121 TIGR01533 lipo_e_P4 5'-nucleot 98.6 2.3E-07 5E-12 71.1 8.8 84 3-90 118-204 (266)
122 TIGR01497 kdpB K+-transporting 98.4 2E-06 4.3E-11 73.5 9.7 88 3-99 446-533 (675)
123 PF08282 Hydrolase_3: haloacid 98.4 7.2E-06 1.6E-10 60.6 11.3 47 55-102 183-229 (254)
124 PRK14010 potassium-transportin 98.4 2.6E-06 5.7E-11 72.8 10.0 88 3-99 441-528 (673)
125 PRK01122 potassium-transportin 98.4 2.9E-06 6.3E-11 72.6 9.9 88 3-99 445-532 (679)
126 TIGR01456 CECR5 HAD-superfamil 98.4 7.1E-07 1.5E-11 70.1 5.4 50 55-104 231-294 (321)
127 COG2217 ZntA Cation transport 98.4 2.7E-06 5.9E-11 73.0 9.3 85 3-96 537-621 (713)
128 PRK11590 hypothetical protein; 98.3 1.3E-05 2.9E-10 59.1 11.1 94 3-98 95-200 (211)
129 KOG2630 Enolase-phosphatase E- 98.3 6.1E-06 1.3E-10 61.4 8.8 104 3-107 123-230 (254)
130 PRK15126 thiamin pyrimidine py 98.3 9.3E-06 2E-10 61.9 10.3 43 56-98 186-228 (272)
131 COG0561 Cof Predicted hydrolas 98.3 1.2E-05 2.7E-10 60.9 10.6 45 56-100 187-231 (264)
132 TIGR00099 Cof-subfamily Cof su 98.3 1.4E-05 3E-10 60.4 10.7 49 51-99 181-229 (256)
133 KOG3120 Predicted haloacid deh 98.3 4.1E-06 8.9E-11 62.0 7.2 103 3-106 84-215 (256)
134 TIGR01116 ATPase-IIA1_Ca sarco 98.3 1.1E-05 2.4E-10 71.4 11.2 92 3-97 537-653 (917)
135 TIGR01684 viral_ppase viral ph 98.3 5.2E-06 1.1E-10 64.2 7.9 79 6-85 149-261 (301)
136 PLN02645 phosphoglycolate phos 98.2 1.2E-05 2.6E-10 62.9 9.7 91 3-99 44-136 (311)
137 PF05761 5_nucleotid: 5' nucle 98.2 1E-05 2.2E-10 66.2 9.4 100 5-105 185-328 (448)
138 TIGR02463 MPGP_rel mannosyl-3- 98.2 8.1E-06 1.8E-10 60.3 8.1 65 32-98 151-219 (221)
139 TIGR01545 YfhB_g-proteo haloac 98.2 3.6E-05 7.7E-10 57.0 10.9 94 3-98 94-199 (210)
140 PRK00192 mannosyl-3-phosphogly 98.2 1.1E-05 2.4E-10 61.7 8.2 65 34-101 165-234 (273)
141 TIGR01647 ATPase-IIIA_H plasma 98.1 2.7E-05 5.7E-10 67.7 10.1 94 3-99 442-559 (755)
142 TIGR01524 ATPase-IIIB_Mg magne 98.1 2.7E-05 5.9E-10 68.6 10.2 94 3-99 515-627 (867)
143 PF13344 Hydrolase_6: Haloacid 98.1 2.5E-05 5.4E-10 51.4 7.6 85 3-95 14-100 (101)
144 PRK10517 magnesium-transportin 98.1 3E-05 6.5E-10 68.5 9.7 94 3-99 550-662 (902)
145 PRK15122 magnesium-transportin 98.1 3.1E-05 6.6E-10 68.5 9.6 97 3-103 550-665 (903)
146 PHA03398 viral phosphatase sup 98.0 3.2E-05 6.9E-10 59.9 8.2 80 5-85 150-263 (303)
147 TIGR02250 FCP1_euk FCP1-like p 98.0 1.7E-05 3.8E-10 56.1 5.6 77 3-86 58-139 (156)
148 TIGR01485 SPP_plant-cyano sucr 98.0 5.8E-05 1.3E-09 56.9 8.7 53 51-103 160-212 (249)
149 COG4359 Uncharacterized conser 97.9 4E-05 8.7E-10 55.4 6.7 87 3-96 73-181 (220)
150 TIGR01517 ATPase-IIB_Ca plasma 97.9 6.5E-05 1.4E-09 66.8 9.5 93 3-98 579-692 (941)
151 TIGR01523 ATPase-IID_K-Na pota 97.7 0.00027 5.8E-09 63.5 10.0 93 3-98 646-769 (1053)
152 TIGR02471 sucr_syn_bact_C sucr 97.7 6.2E-05 1.3E-09 56.3 4.5 48 51-98 152-199 (236)
153 KOG0207 Cation transport ATPas 97.7 0.00026 5.5E-09 61.7 8.6 85 3-96 723-807 (951)
154 TIGR01484 HAD-SF-IIB HAD-super 97.7 6.2E-05 1.3E-09 54.9 4.3 45 54-98 159-203 (204)
155 PF11019 DUF2608: Protein of u 97.6 0.00069 1.5E-08 51.6 9.6 96 5-103 83-211 (252)
156 PRK10513 sugar phosphate phosp 97.6 0.00012 2.6E-09 55.6 5.0 49 51-99 189-237 (270)
157 PRK10976 putative hydrolase; P 97.6 0.00012 2.5E-09 55.6 4.9 49 51-99 183-231 (266)
158 COG0474 MgtA Cation transport 97.5 0.00047 1E-08 61.2 8.6 97 3-102 547-666 (917)
159 TIGR01452 PGP_euk phosphoglyco 97.5 0.001 2.3E-08 51.1 9.5 89 2-97 17-107 (279)
160 TIGR01675 plant-AP plant acid 97.5 0.00074 1.6E-08 50.7 8.3 97 2-103 119-224 (229)
161 TIGR01106 ATPase-IIC_X-K sodiu 97.5 0.00079 1.7E-08 60.3 9.7 94 3-99 568-708 (997)
162 COG3882 FkbH Predicted enzyme 97.5 0.0013 2.8E-08 54.0 9.7 90 3-95 255-348 (574)
163 TIGR01494 ATPase_P-type ATPase 97.5 0.001 2.2E-08 55.2 9.2 82 3-96 347-428 (499)
164 KOG4549 Magnesium-dependent ph 97.4 0.00085 1.8E-08 45.7 6.9 88 1-88 42-136 (144)
165 KOG2961 Predicted hydrolase (H 97.4 0.0025 5.4E-08 45.0 9.0 96 4-106 62-172 (190)
166 TIGR01486 HAD-SF-IIB-MPGP mann 97.4 0.0008 1.7E-08 50.9 7.0 51 51-101 169-221 (256)
167 PF03767 Acid_phosphat_B: HAD 97.3 0.00077 1.7E-08 50.6 6.2 96 3-102 115-223 (229)
168 PF06941 NT5C: 5' nucleotidase 97.3 0.00029 6.2E-09 51.2 3.7 89 2-106 72-167 (191)
169 PRK03669 mannosyl-3-phosphogly 97.2 0.00067 1.5E-08 51.8 4.9 50 51-100 180-232 (271)
170 TIGR01657 P-ATPase-V P-type AT 97.2 0.0038 8.1E-08 56.4 9.9 41 3-44 656-696 (1054)
171 PLN02887 hydrolase family prot 97.1 0.00077 1.7E-08 57.0 5.2 49 51-99 500-548 (580)
172 smart00775 LNS2 LNS2 domain. T 97.1 0.0083 1.8E-07 42.4 9.8 93 3-96 27-141 (157)
173 TIGR01658 EYA-cons_domain eyes 97.1 0.0023 5.1E-08 48.3 7.1 89 19-108 175-264 (274)
174 COG3700 AphA Acid phosphatase 97.1 0.003 6.6E-08 45.7 7.2 92 7-104 118-214 (237)
175 TIGR00685 T6PP trehalose-phosp 97.1 0.0014 3.1E-08 49.3 6.0 49 55-103 164-219 (244)
176 KOG0202 Ca2+ transporting ATPa 97.0 0.0041 9E-08 54.1 8.7 94 3-99 584-702 (972)
177 PF03031 NIF: NLI interacting 97.0 0.00051 1.1E-08 48.2 2.8 91 4-96 37-128 (159)
178 COG2216 KdpB High-affinity K+ 97.0 0.0028 6.1E-08 52.6 7.3 86 4-98 448-533 (681)
179 TIGR01652 ATPase-Plipid phosph 97.0 0.0058 1.3E-07 55.2 9.5 41 3-44 631-671 (1057)
180 PF05116 S6PP: Sucrose-6F-phos 96.9 0.0039 8.5E-08 47.2 6.8 53 51-104 158-210 (247)
181 COG2503 Predicted secreted aci 96.8 0.01 2.3E-07 44.8 7.9 81 3-87 122-206 (274)
182 PLN02382 probable sucrose-phos 96.7 0.0044 9.5E-08 50.5 5.7 53 51-103 168-223 (413)
183 COG5610 Predicted hydrolase (H 96.6 0.0064 1.4E-07 49.9 6.4 93 8-100 104-201 (635)
184 PF05822 UMPH-1: Pyrimidine 5' 96.6 0.0013 2.8E-08 49.9 2.3 114 3-122 90-227 (246)
185 KOG3107 Predicted haloacid deh 96.5 0.026 5.6E-07 45.3 8.5 94 19-114 370-464 (468)
186 TIGR02461 osmo_MPG_phos mannos 96.4 0.0056 1.2E-07 45.7 4.4 41 58-98 181-223 (225)
187 PLN03190 aminophospholipid tra 96.3 0.032 7E-07 51.1 9.4 40 3-43 726-765 (1178)
188 PRK10187 trehalose-6-phosphate 96.3 0.012 2.5E-07 45.1 5.7 49 56-104 172-223 (266)
189 KOG2470 Similar to IMP-GMP spe 96.2 0.016 3.4E-07 46.2 6.2 96 6-102 243-376 (510)
190 TIGR01458 HAD-SF-IIA-hyp3 HAD- 96.2 0.01 2.2E-07 45.2 5.1 41 4-44 22-64 (257)
191 TIGR01680 Veg_Stor_Prot vegeta 96.1 0.042 9.2E-07 42.3 7.9 98 2-103 144-251 (275)
192 PRK00192 mannosyl-3-phosphogly 96.0 0.019 4.2E-07 43.8 5.7 45 3-48 21-65 (273)
193 TIGR01460 HAD-SF-IIA Haloacid 95.9 0.1 2.2E-06 39.2 9.2 85 3-95 14-101 (236)
194 PRK14502 bifunctional mannosyl 95.9 0.088 1.9E-06 45.5 9.6 46 55-100 610-657 (694)
195 COG4030 Uncharacterized protei 95.9 0.071 1.5E-06 40.3 7.9 40 2-43 82-121 (315)
196 KOG3128 Uncharacterized conser 95.3 0.14 3.1E-06 39.1 7.9 118 4-123 139-277 (298)
197 TIGR02461 osmo_MPG_phos mannos 95.3 0.054 1.2E-06 40.4 5.7 42 4-46 16-57 (225)
198 PF05152 DUF705: Protein of un 95.1 0.16 3.5E-06 39.3 7.9 81 4-85 143-257 (297)
199 TIGR02463 MPGP_rel mannosyl-3- 95.1 0.064 1.4E-06 39.4 5.7 40 4-44 17-56 (221)
200 KOG2469 IMP-GMP specific 5'-nu 95.1 0.066 1.4E-06 43.3 5.9 119 9-128 204-362 (424)
201 TIGR01456 CECR5 HAD-superfamil 95.0 0.14 3E-06 40.3 7.6 87 2-98 15-108 (321)
202 PLN02423 phosphomannomutase 94.9 0.054 1.2E-06 40.9 4.9 54 51-109 182-239 (245)
203 PRK10976 putative hydrolase; P 94.8 0.08 1.7E-06 40.0 5.6 43 3-46 19-61 (266)
204 COG0731 Fe-S oxidoreductases [ 94.7 0.051 1.1E-06 42.4 4.3 33 1-33 90-123 (296)
205 PRK10530 pyridoxal phosphate ( 94.7 0.092 2E-06 39.6 5.6 43 3-46 20-62 (272)
206 KOG2882 p-Nitrophenyl phosphat 94.5 0.45 9.7E-06 37.2 8.9 41 3-44 38-81 (306)
207 KOG0206 P-type ATPase [General 94.4 0.12 2.7E-06 47.0 6.5 36 3-39 651-686 (1151)
208 TIGR01486 HAD-SF-IIB-MPGP mann 94.3 0.13 2.9E-06 38.7 5.7 42 4-46 17-58 (256)
209 PRK13762 tRNA-modifying enzyme 94.0 0.21 4.6E-06 39.4 6.4 36 1-36 140-175 (322)
210 PRK12702 mannosyl-3-phosphogly 93.8 0.18 3.9E-06 39.4 5.5 43 4-47 19-61 (302)
211 PRK10513 sugar phosphate phosp 93.5 0.2 4.4E-06 37.8 5.4 41 3-44 20-60 (270)
212 PRK03669 mannosyl-3-phosphogly 93.4 0.23 4.9E-06 37.9 5.6 40 4-44 25-64 (271)
213 PF06506 PrpR_N: Propionate ca 93.1 0.32 7E-06 34.8 5.7 98 7-115 65-162 (176)
214 PTZ00174 phosphomannomutase; P 93.0 0.44 9.5E-06 35.9 6.5 47 51-101 181-231 (247)
215 KOG0204 Calcium transporting A 92.7 0.52 1.1E-05 41.8 7.2 92 3-98 647-762 (1034)
216 TIGR02329 propionate_PrpR prop 92.7 2.2 4.7E-05 36.1 10.7 97 7-118 85-184 (526)
217 TIGR01689 EcbF-BcbF capsule bi 92.6 0.46 1E-05 32.4 5.5 61 3-78 24-84 (126)
218 TIGR02245 HAD_IIID1 HAD-superf 92.4 1.2 2.7E-05 32.6 8.0 112 4-121 46-179 (195)
219 KOG0209 P-type ATPase [Inorgan 92.1 0.56 1.2E-05 41.6 6.6 42 3-45 675-716 (1160)
220 PRK15424 propionate catabolism 90.9 4.5 9.8E-05 34.3 10.8 98 7-119 95-195 (538)
221 PLN02951 Molybderin biosynthes 90.9 2.1 4.7E-05 34.4 8.5 44 1-45 116-162 (373)
222 TIGR01484 HAD-SF-IIB HAD-super 90.3 0.92 2E-05 32.7 5.6 39 3-42 17-55 (204)
223 CHL00162 thiG thiamin biosynth 90.2 5.9 0.00013 30.4 9.8 96 3-104 118-221 (267)
224 TIGR03470 HpnH hopanoid biosyn 90.0 3.1 6.8E-05 32.7 8.7 30 1-30 82-111 (318)
225 PF05690 ThiG: Thiazole biosyn 89.7 6.6 0.00014 29.8 9.6 107 3-115 104-222 (247)
226 PF08235 LNS2: LNS2 (Lipin/Ned 89.5 2.6 5.7E-05 29.9 7.1 91 3-96 27-141 (157)
227 COG4850 Uncharacterized conser 89.3 2.1 4.5E-05 34.0 6.9 82 3-88 196-292 (373)
228 PLN02205 alpha,alpha-trehalose 88.8 2.2 4.9E-05 38.1 7.7 39 56-94 760-801 (854)
229 TIGR02495 NrdG2 anaerobic ribo 88.8 1.3 2.7E-05 31.8 5.2 84 1-96 72-155 (191)
230 PRK11840 bifunctional sulfur c 88.7 8.4 0.00018 30.6 10.0 97 2-104 177-281 (326)
231 cd04728 ThiG Thiazole synthase 88.6 9.1 0.0002 29.2 11.2 97 3-106 104-209 (248)
232 TIGR02668 moaA_archaeal probab 88.5 3.1 6.8E-05 32.1 7.6 44 1-44 66-110 (302)
233 PRK14501 putative bifunctional 88.2 0.93 2E-05 39.6 4.9 45 56-102 655-701 (726)
234 COG5663 Uncharacterized conser 87.7 4.7 0.0001 29.1 7.3 97 6-115 75-175 (194)
235 KOG0210 P-type ATPase [Inorgan 87.7 1.2 2.6E-05 38.9 5.1 39 3-42 658-696 (1051)
236 PRK14502 bifunctional mannosyl 87.5 1.5 3.2E-05 38.2 5.5 43 4-47 434-476 (694)
237 PLN02887 hydrolase family prot 87.4 1.4 3E-05 37.7 5.4 41 3-44 325-365 (580)
238 PLN02580 trehalose-phosphatase 87.3 3.6 7.7E-05 33.4 7.4 37 56-92 299-338 (384)
239 PRK13361 molybdenum cofactor b 86.9 4.4 9.5E-05 31.9 7.7 45 1-45 71-117 (329)
240 PRK10076 pyruvate formate lyas 86.4 1.5 3.3E-05 32.6 4.5 31 1-31 48-79 (213)
241 KOG2134 Polynucleotide kinase 86.2 1.1 2.4E-05 36.3 3.9 95 4-98 105-230 (422)
242 PRK10187 trehalose-6-phosphate 86.1 1.4 3E-05 33.7 4.4 40 3-43 36-76 (266)
243 PTZ00174 phosphomannomutase; P 85.9 2 4.3E-05 32.3 5.1 36 3-39 22-57 (247)
244 cd01994 Alpha_ANH_like_IV This 85.4 12 0.00026 27.2 10.1 99 11-112 15-132 (194)
245 PF06189 5-nucleotidase: 5'-nu 84.9 7.2 0.00016 30.0 7.6 91 2-105 163-262 (264)
246 TIGR01485 SPP_plant-cyano sucr 84.7 2 4.3E-05 32.2 4.6 40 4-44 22-61 (249)
247 TIGR03679 arCOG00187 arCOG0018 84.6 14 0.00031 27.4 10.5 101 11-114 13-132 (218)
248 PRK00208 thiG thiazole synthas 84.4 16 0.00035 27.9 11.2 97 3-106 104-209 (250)
249 COG0761 lytB 4-Hydroxy-3-methy 84.1 12 0.00026 29.2 8.6 104 5-119 170-284 (294)
250 TIGR03365 Bsubt_queE 7-cyano-7 83.8 1.2 2.7E-05 33.5 3.1 30 1-30 82-111 (238)
251 PF06014 DUF910: Bacterial pro 83.0 0.58 1.3E-05 27.9 0.8 26 63-92 7-32 (62)
252 PRK11145 pflA pyruvate formate 81.9 3.3 7.2E-05 31.0 4.8 39 1-39 80-122 (246)
253 PLN02334 ribulose-phosphate 3- 81.7 19 0.00041 26.7 10.3 112 6-118 102-220 (229)
254 COG0036 Rpe Pentose-5-phosphat 80.8 21 0.00046 26.7 10.8 116 4-119 94-216 (220)
255 TIGR02826 RNR_activ_nrdG3 anae 80.3 5.3 0.00011 27.9 5.0 37 5-41 74-110 (147)
256 TIGR02468 sucrsPsyn_pln sucros 80.3 5.9 0.00013 36.3 6.4 71 32-103 924-1002(1050)
257 PLN02177 glycerol-3-phosphate 79.5 34 0.00073 28.8 10.3 82 12-96 116-210 (497)
258 PRK12702 mannosyl-3-phosphogly 79.5 3.5 7.7E-05 32.3 4.3 44 56-99 206-251 (302)
259 PRK08005 epimerase; Validated 79.1 24 0.00051 26.2 10.2 98 6-103 93-193 (210)
260 PF04413 Glycos_transf_N: 3-De 78.4 11 0.00024 27.2 6.4 119 8-135 37-169 (186)
261 PF06073 DUF934: Bacterial pro 77.4 11 0.00023 25.2 5.5 56 63-119 38-95 (110)
262 COG2022 ThiG Uncharacterized e 76.9 31 0.00066 26.3 9.4 95 3-103 111-213 (262)
263 KOG0203 Na+/K+ ATPase, alpha s 76.9 8 0.00017 34.7 6.0 96 3-99 590-730 (1019)
264 TIGR02109 PQQ_syn_pqqE coenzym 75.9 3.8 8.2E-05 32.5 3.6 43 1-44 63-107 (358)
265 TIGR02494 PFLE_PFLC glycyl-rad 75.2 6.8 0.00015 30.1 4.8 30 1-30 135-165 (295)
266 TIGR02493 PFLA pyruvate format 75.1 9.2 0.0002 28.2 5.4 40 1-40 75-118 (235)
267 PF13580 SIS_2: SIS domain; PD 74.5 24 0.00052 24.0 7.1 95 7-101 23-137 (138)
268 PF03808 Glyco_tran_WecB: Glyc 74.5 19 0.00042 25.5 6.7 74 8-85 37-112 (172)
269 PF14106 DUF4279: Domain of un 74.3 12 0.00025 24.6 5.2 71 64-135 9-79 (118)
270 COG0019 LysA Diaminopimelate d 74.1 33 0.00071 28.0 8.6 36 69-104 91-128 (394)
271 PF02606 LpxK: Tetraacyldisacc 73.7 14 0.0003 29.3 6.3 89 6-100 52-154 (326)
272 PRK05301 pyrroloquinoline quin 73.6 4.7 0.0001 32.2 3.7 43 1-44 72-116 (378)
273 KOG0323 TFIIF-interacting CTD 73.6 6.5 0.00014 34.0 4.6 45 3-49 201-246 (635)
274 COG2099 CobK Precorrin-6x redu 73.1 40 0.00087 25.9 10.0 93 5-103 114-231 (257)
275 PF04055 Radical_SAM: Radical 73.0 25 0.00054 23.5 6.8 83 1-96 55-142 (166)
276 TIGR03278 methan_mark_10 putat 72.2 9.1 0.0002 31.3 5.0 45 1-46 84-132 (404)
277 TIGR02471 sucr_syn_bact_C sucr 72.1 7.3 0.00016 28.8 4.2 35 8-44 20-54 (236)
278 PRK15108 biotin synthase; Prov 71.6 12 0.00025 29.9 5.5 42 5-47 110-151 (345)
279 cd02071 MM_CoA_mut_B12_BD meth 71.2 8.2 0.00018 25.8 3.9 17 10-26 41-57 (122)
280 COG2896 MoaA Molybdenum cofact 70.4 31 0.00066 27.5 7.4 62 1-67 69-131 (322)
281 TIGR01290 nifB nitrogenase cof 69.6 30 0.00066 28.6 7.6 43 1-44 89-135 (442)
282 PLN03017 trehalose-phosphatase 69.4 33 0.00072 27.8 7.5 44 58-101 283-333 (366)
283 TIGR00262 trpA tryptophan synt 69.1 49 0.0011 25.2 10.5 95 4-103 125-229 (256)
284 KOG2832 TFIIF-interacting CTD 68.7 14 0.0003 30.0 5.1 128 5-139 216-348 (393)
285 PF02358 Trehalose_PPase: Treh 68.1 6.5 0.00014 29.2 3.2 48 56-103 163-218 (235)
286 PRK08745 ribulose-phosphate 3- 67.6 49 0.0011 24.7 10.6 113 6-118 97-217 (223)
287 COG0602 NrdG Organic radical a 67.4 7.8 0.00017 28.7 3.4 30 1-30 81-110 (212)
288 TIGR02666 moaA molybdenum cofa 67.0 15 0.00034 28.7 5.2 45 1-45 69-115 (334)
289 COG3769 Predicted hydrolase (H 65.8 13 0.00029 28.2 4.3 38 7-45 27-64 (274)
290 PF05240 APOBEC_C: APOBEC-like 65.8 10 0.00022 22.1 2.9 21 6-26 2-22 (55)
291 COG1519 KdtA 3-deoxy-D-manno-o 65.6 65 0.0014 26.6 8.5 112 8-131 65-193 (419)
292 TIGR00640 acid_CoA_mut_C methy 65.6 14 0.0003 25.2 4.2 21 8-28 42-62 (132)
293 cd06831 PLPDE_III_ODC_like_AZI 65.3 44 0.00095 27.1 7.6 82 8-102 23-110 (394)
294 KOG4549 Magnesium-dependent ph 65.1 23 0.0005 24.4 5.0 48 72-119 38-85 (144)
295 PF04413 Glycos_transf_N: 3-De 65.0 7.5 0.00016 28.1 2.9 72 10-88 109-185 (186)
296 cd05008 SIS_GlmS_GlmD_1 SIS (S 64.8 14 0.00031 24.2 4.1 25 6-30 60-84 (126)
297 PTZ00170 D-ribulose-5-phosphat 64.2 58 0.0012 24.3 9.7 109 8-118 103-219 (228)
298 PRK08883 ribulose-phosphate 3- 64.2 57 0.0012 24.3 9.1 113 6-118 93-213 (220)
299 cd05014 SIS_Kpsf KpsF-like pro 63.8 13 0.00028 24.5 3.7 26 5-30 60-85 (128)
300 PLN03017 trehalose-phosphatase 63.6 14 0.0003 29.9 4.4 33 3-37 133-165 (366)
301 PLN02151 trehalose-phosphatase 63.5 35 0.00075 27.5 6.6 36 58-93 269-307 (354)
302 COG4483 Uncharacterized protei 62.9 6.8 0.00015 23.5 1.9 26 63-92 7-32 (68)
303 KOG1618 Predicted phosphatase 62.9 6.6 0.00014 31.3 2.4 50 54-103 268-342 (389)
304 KOG1618 Predicted phosphatase 62.4 23 0.0005 28.3 5.3 87 3-99 51-144 (389)
305 PLN02151 trehalose-phosphatase 61.6 14 0.0003 29.8 4.0 35 3-39 120-154 (354)
306 TIGR02886 spore_II_AA anti-sig 61.1 27 0.00058 22.2 4.8 37 9-48 61-97 (106)
307 PF00578 AhpC-TSA: AhpC/TSA fa 60.6 42 0.00091 21.5 6.6 38 6-44 46-83 (124)
308 PLN02580 trehalose-phosphatase 60.2 16 0.00036 29.7 4.3 35 3-39 141-175 (384)
309 PF04007 DUF354: Protein of un 59.5 65 0.0014 25.7 7.5 90 8-103 16-112 (335)
310 PF10307 DUF2410: Hypothetical 59.4 69 0.0015 23.6 7.3 75 15-92 67-151 (197)
311 PRK08091 ribulose-phosphate 3- 58.9 76 0.0016 23.9 10.9 98 6-103 103-209 (228)
312 COG3769 Predicted hydrolase (H 58.4 48 0.001 25.3 6.1 91 6-100 137-234 (274)
313 COG0263 ProB Glutamate 5-kinas 58.0 63 0.0014 26.2 7.0 79 5-88 30-114 (369)
314 cd00636 TroA-like Helical back 57.3 49 0.0011 21.3 6.4 60 75-135 62-125 (148)
315 PRK14501 putative bifunctional 56.0 21 0.00045 31.3 4.5 39 4-43 515-554 (726)
316 cd05710 SIS_1 A subgroup of th 56.0 24 0.00052 23.2 4.0 25 6-30 61-85 (120)
317 PF04273 DUF442: Putative phos 55.5 58 0.0012 21.5 6.7 67 9-78 17-90 (110)
318 cd07043 STAS_anti-anti-sigma_f 55.5 26 0.00056 21.5 3.9 38 8-48 59-96 (99)
319 cd01766 Ufm1 Urm1-like ubiquit 55.4 30 0.00065 21.4 3.8 46 53-98 22-67 (82)
320 PLN02423 phosphomannomutase 55.2 29 0.00063 26.0 4.7 26 3-29 24-49 (245)
321 PRK13307 bifunctional formalde 54.7 1.2E+02 0.0026 24.9 9.8 106 7-119 264-377 (391)
322 TIGR03127 RuMP_HxlB 6-phospho 54.5 24 0.00052 24.9 4.0 26 5-30 85-110 (179)
323 PF10113 Fibrillarin_2: Fibril 54.2 33 0.00072 28.4 5.0 58 61-120 209-271 (505)
324 cd06533 Glyco_transf_WecG_TagA 53.9 76 0.0017 22.4 6.8 29 8-38 35-63 (171)
325 TIGR00190 thiC thiamine biosyn 53.8 47 0.001 27.3 5.8 82 8-105 164-267 (423)
326 PF13353 Fer4_12: 4Fe-4S singl 53.1 17 0.00038 24.2 3.0 30 1-30 62-95 (139)
327 PF09001 DUF1890: Domain of un 53.0 13 0.00027 25.9 2.2 42 2-47 10-51 (139)
328 PF00875 DNA_photolyase: DNA p 52.4 18 0.00038 25.2 3.0 43 5-48 52-94 (165)
329 TIGR00696 wecB_tagA_cpsF bacte 51.9 87 0.0019 22.5 6.6 73 9-85 38-111 (177)
330 PF00696 AA_kinase: Amino acid 51.9 41 0.0009 24.7 5.1 41 5-47 19-59 (242)
331 PF01380 SIS: SIS domain SIS d 51.9 39 0.00084 22.0 4.5 26 5-30 66-91 (131)
332 PRK13352 thiamine biosynthesis 51.8 53 0.0012 27.1 5.8 82 8-105 167-270 (431)
333 KOG1359 Glycine C-acetyltransf 51.5 48 0.001 26.5 5.3 95 7-104 275-378 (417)
334 cd06589 GH31 The enzymes of gl 51.4 31 0.00068 26.2 4.4 28 2-29 62-89 (265)
335 TIGR00377 ant_ant_sig anti-ant 51.3 42 0.00091 21.2 4.5 38 9-49 65-102 (108)
336 PRK00164 moaA molybdenum cofac 51.3 40 0.00086 26.3 5.1 44 1-44 75-120 (331)
337 PRK03692 putative UDP-N-acetyl 51.2 1.1E+02 0.0023 23.3 7.2 72 9-85 95-168 (243)
338 COG0541 Ffh Signal recognition 51.1 1.1E+02 0.0023 25.6 7.5 51 51-101 189-247 (451)
339 PF00072 Response_reg: Respons 50.1 60 0.0013 20.1 9.9 99 7-113 9-111 (112)
340 cd05013 SIS_RpiR RpiR-like pro 50.0 35 0.00075 22.3 4.0 24 6-29 74-97 (139)
341 TIGR00365 monothiol glutaredox 49.3 67 0.0015 20.4 7.9 68 10-84 3-77 (97)
342 cd06595 GH31_xylosidase_XylS-l 48.8 22 0.00047 27.6 3.2 26 2-27 70-95 (292)
343 KOG0622 Ornithine decarboxylas 47.9 1.4E+02 0.003 24.8 7.6 66 23-101 85-152 (448)
344 cd06594 GH31_glucosidase_YihQ 47.8 22 0.00048 27.9 3.1 25 2-26 67-91 (317)
345 PF13394 Fer4_14: 4Fe-4S singl 47.8 6.8 0.00015 25.6 0.2 24 6-29 65-90 (119)
346 COG1126 GlnQ ABC-type polar am 47.8 17 0.00036 27.6 2.3 38 1-40 168-205 (240)
347 cd01335 Radical_SAM Radical SA 47.8 54 0.0012 22.4 5.0 42 2-44 55-100 (204)
348 COG1180 PflA Pyruvate-formate 47.7 44 0.00095 25.5 4.7 30 4-33 97-126 (260)
349 cd01143 YvrC Periplasmic bindi 47.7 94 0.002 21.7 6.4 63 71-135 58-122 (195)
350 PF02784 Orn_Arg_deC_N: Pyrido 47.5 1.2E+02 0.0025 22.7 6.9 80 10-102 11-94 (251)
351 PRK13125 trpA tryptophan synth 47.4 1.2E+02 0.0026 22.7 9.7 98 5-103 115-216 (244)
352 cd03784 GT1_Gtf_like This fami 47.1 1.2E+02 0.0027 23.9 7.4 32 9-44 18-49 (401)
353 TIGR01426 MGT glycosyltransfer 46.8 1.4E+02 0.0031 23.5 9.2 31 10-44 14-44 (392)
354 cd05006 SIS_GmhA Phosphoheptos 46.4 35 0.00076 24.0 3.8 24 6-29 115-138 (177)
355 TIGR02765 crypto_DASH cryptoch 46.3 33 0.00072 27.9 4.1 41 6-47 61-101 (429)
356 PF02358 Trehalose_PPase: Treh 46.2 26 0.00055 26.0 3.2 34 3-37 19-53 (235)
357 PF09269 DUF1967: Domain of un 46.1 21 0.00046 21.5 2.2 24 61-84 43-66 (69)
358 cd00733 GlyRS_alpha_core Class 45.7 39 0.00084 26.0 4.0 41 59-99 87-130 (279)
359 COG1366 SpoIIAA Anti-anti-sigm 45.7 40 0.00087 22.0 3.8 36 9-47 66-101 (117)
360 PRK10916 ADP-heptose:LPS hepto 45.5 1.5E+02 0.0032 23.2 9.6 86 7-100 201-286 (348)
361 COG0752 GlyQ Glycyl-tRNA synth 45.3 25 0.00054 27.0 2.9 44 56-99 85-135 (298)
362 cd05005 SIS_PHI Hexulose-6-pho 45.0 40 0.00087 23.8 3.9 26 5-30 88-113 (179)
363 PF02350 Epimerase_2: UDP-N-ac 45.0 1.6E+02 0.0034 23.4 8.4 84 4-100 198-283 (346)
364 PRK09534 btuF corrinoid ABC tr 44.9 1E+02 0.0022 24.6 6.6 64 71-135 117-181 (359)
365 COG0052 RpsB Ribosomal protein 44.8 1.4E+02 0.0031 22.9 8.7 28 75-102 157-187 (252)
366 PLN02591 tryptophan synthase 44.8 1.4E+02 0.003 22.8 10.6 100 4-103 116-220 (250)
367 cd01149 HutB Hemin binding pro 44.6 1.2E+02 0.0026 22.1 6.5 64 71-135 56-121 (235)
368 COG0378 HypB Ni2+-binding GTPa 44.4 1.3E+02 0.0028 22.3 7.3 71 8-81 30-103 (202)
369 PRK13937 phosphoheptose isomer 44.4 43 0.00094 24.0 4.0 25 5-29 119-143 (188)
370 cd01453 vWA_transcription_fact 44.1 1.2E+02 0.0025 21.7 6.9 14 59-72 147-160 (183)
371 PF04472 DUF552: Protein of un 43.7 72 0.0016 19.2 4.5 38 2-40 6-43 (73)
372 TIGR03595 Obg_CgtA_exten Obg f 43.7 33 0.00072 20.6 2.8 57 22-84 10-66 (69)
373 PF03332 PMM: Eukaryotic phosp 43.7 36 0.00078 25.5 3.5 25 8-33 1-25 (220)
374 COG1877 OtsB Trehalose-6-phosp 43.5 42 0.00091 25.9 4.0 48 57-104 181-231 (266)
375 KOG0780 Signal recognition par 43.5 1.9E+02 0.0042 24.1 7.8 43 47-89 184-229 (483)
376 cd01773 Faf1_like1_UBX Faf1 ik 43.5 25 0.00055 22.1 2.3 19 65-83 63-81 (82)
377 cd04795 SIS SIS domain. SIS (S 43.5 37 0.00079 20.3 3.1 22 5-26 60-81 (87)
378 COG0859 RfaF ADP-heptose:LPS h 43.4 1.6E+02 0.0035 23.1 8.7 84 5-101 194-277 (334)
379 PRK09348 glyQ glycyl-tRNA synt 43.4 43 0.00094 25.8 3.9 40 60-99 92-134 (283)
380 PRK10834 vancomycin high tempe 43.4 1.5E+02 0.0032 22.6 10.4 89 10-102 72-169 (239)
381 TIGR03556 photolyase_8HDF deox 43.2 45 0.00098 27.7 4.4 42 5-47 54-95 (471)
382 PF02350 Epimerase_2: UDP-N-ac 43.2 1.7E+02 0.0036 23.3 9.2 109 14-124 2-130 (346)
383 PF03659 Glyco_hydro_71: Glyco 43.1 71 0.0015 26.0 5.4 20 84-103 20-39 (386)
384 PF14336 DUF4392: Domain of un 43.1 1.3E+02 0.0028 23.5 6.7 40 5-44 62-101 (291)
385 TIGR00441 gmhA phosphoheptose 43.1 43 0.00094 23.1 3.8 25 5-29 92-116 (154)
386 PF06437 ISN1: IMP-specific 5' 43.0 45 0.00099 27.3 4.2 44 59-104 350-402 (408)
387 cd07041 STAS_RsbR_RsbS_like Su 43.0 80 0.0017 20.0 4.8 34 9-45 63-96 (109)
388 PF01497 Peripla_BP_2: Peripla 42.7 1.2E+02 0.0026 21.9 6.3 63 72-135 59-123 (238)
389 cd05017 SIS_PGI_PMI_1 The memb 42.5 43 0.00093 21.9 3.5 35 6-43 57-91 (119)
390 COG5190 FCP1 TFIIF-interacting 42.5 75 0.0016 26.0 5.4 80 5-87 254-334 (390)
391 cd06599 GH31_glycosidase_Aec37 42.1 29 0.00063 27.2 3.0 25 2-26 69-93 (317)
392 PF03033 Glyco_transf_28: Glyc 42.0 45 0.00098 21.9 3.7 31 10-44 17-47 (139)
393 KOG1605 TFIIF-interacting CTD 42.0 4.8 0.0001 31.0 -1.4 111 4-121 132-247 (262)
394 TIGR00388 glyQ glycyl-tRNA syn 41.5 50 0.0011 25.6 4.0 40 60-99 89-131 (293)
395 cd08612 GDPD_GDE4 Glycerophosp 41.2 1.1E+02 0.0024 23.7 6.1 39 9-49 251-289 (300)
396 PRK13813 orotidine 5'-phosphat 41.0 68 0.0015 23.3 4.7 104 8-118 95-210 (215)
397 cd06598 GH31_transferase_CtsZ 40.8 33 0.00072 26.8 3.2 26 2-27 66-91 (317)
398 cd06591 GH31_xylosidase_XylS X 40.4 35 0.00076 26.8 3.2 25 2-26 62-86 (319)
399 TIGR00355 purH phosphoribosyla 40.2 1.4E+02 0.0029 25.5 6.7 67 5-80 10-97 (511)
400 cd03789 GT1_LPS_heptosyltransf 40.0 1.6E+02 0.0035 22.1 10.2 88 5-103 139-226 (279)
401 COG1911 RPL30 Ribosomal protei 40.0 74 0.0016 20.7 4.1 36 5-41 21-56 (100)
402 COG0614 FepB ABC-type Fe3+-hyd 39.9 1.1E+02 0.0024 23.1 6.0 65 71-137 113-178 (319)
403 COG2897 SseA Rhodanese-related 39.9 82 0.0018 24.6 5.1 50 54-103 69-124 (285)
404 COG0548 ArgB Acetylglutamate k 39.8 77 0.0017 24.5 4.9 45 3-49 18-62 (265)
405 COG4081 Uncharacterized protei 39.7 1.3E+02 0.0028 20.9 6.8 114 2-119 15-146 (148)
406 KOG0541 Alkyl hydroperoxide re 39.6 72 0.0016 22.8 4.3 46 4-49 63-108 (171)
407 COG2044 Predicted peroxiredoxi 39.5 49 0.0011 22.4 3.3 26 3-28 59-84 (120)
408 PRK14057 epimerase; Provisiona 39.5 1.7E+02 0.0038 22.4 8.9 112 6-117 110-238 (254)
409 PLN02205 alpha,alpha-trehalose 39.4 55 0.0012 29.6 4.6 37 3-40 616-653 (854)
410 KOG1160 Fe-S oxidoreductase [E 39.4 29 0.00063 29.0 2.6 44 1-44 364-407 (601)
411 PRK00414 gmhA phosphoheptose i 39.0 58 0.0013 23.5 4.0 25 5-29 124-148 (192)
412 PF01740 STAS: STAS domain; I 38.8 44 0.00095 21.5 3.1 39 7-48 68-106 (117)
413 COG0078 ArgF Ornithine carbamo 38.7 1.7E+02 0.0037 23.2 6.6 44 63-106 141-190 (310)
414 COG4558 ChuT ABC-type hemin tr 38.7 1.5E+02 0.0033 23.3 6.3 100 36-137 54-164 (300)
415 PF01990 ATP-synt_F: ATP synth 38.4 92 0.002 19.6 4.5 40 77-119 1-40 (95)
416 PF03671 Ufm1: Ubiquitin fold 38.4 18 0.0004 22.2 1.1 42 52-93 21-62 (76)
417 cd06836 PLPDE_III_ODC_DapDC_li 38.4 2.1E+02 0.0045 22.9 8.3 67 22-102 32-100 (379)
418 PF02593 dTMP_synthase: Thymid 38.3 61 0.0013 24.3 4.0 83 4-88 60-148 (217)
419 PRK08649 inosine 5-monophospha 38.2 2.2E+02 0.0047 23.1 10.8 92 8-104 120-218 (368)
420 PF04312 DUF460: Protein of un 38.1 1.4E+02 0.003 20.8 7.1 40 8-47 65-105 (138)
421 COG1058 CinA Predicted nucleot 37.9 1.7E+02 0.0037 22.5 6.5 47 58-104 21-70 (255)
422 cd06592 GH31_glucosidase_KIAA1 37.8 34 0.00073 26.6 2.8 25 2-26 66-90 (303)
423 cd06603 GH31_GANC_GANAB_alpha 37.8 42 0.00091 26.5 3.3 26 2-27 60-85 (339)
424 PF06925 MGDG_synth: Monogalac 37.7 64 0.0014 22.5 4.0 23 58-81 144-166 (169)
425 PF13604 AAA_30: AAA domain; P 37.5 1.6E+02 0.0034 21.2 8.2 72 9-84 36-131 (196)
426 PF13034 DUF3895: Protein of u 37.4 51 0.0011 20.6 2.9 28 2-29 44-71 (78)
427 PRK09482 flap endonuclease-lik 37.3 4.8 0.0001 30.8 -2.0 32 64-95 157-192 (256)
428 cd06593 GH31_xylosidase_YicI Y 37.1 43 0.00094 25.9 3.3 26 2-27 62-87 (308)
429 TIGR00685 T6PP trehalose-phosp 37.1 58 0.0013 24.2 3.9 26 4-29 26-52 (244)
430 PRK13938 phosphoheptose isomer 36.8 66 0.0014 23.5 4.0 25 5-29 126-150 (196)
431 cd04256 AAK_P5CS_ProBA AAK_P5C 36.8 57 0.0012 25.3 3.8 76 6-82 34-128 (284)
432 PF07287 DUF1446: Protein of u 36.8 1.6E+02 0.0035 23.8 6.5 107 2-112 54-178 (362)
433 PRK05752 uroporphyrinogen-III 36.3 1.8E+02 0.004 21.7 7.4 101 2-110 9-117 (255)
434 PRK11070 ssDNA exonuclease Rec 36.0 2.9E+02 0.0062 23.9 9.6 96 2-100 49-157 (575)
435 cd06600 GH31_MGAM-like This fa 35.5 45 0.00097 26.2 3.1 25 2-26 60-84 (317)
436 cd01421 IMPCH Inosine monophos 35.3 1.8E+02 0.0039 21.3 6.5 34 5-44 10-43 (187)
437 cd01841 NnaC_like NnaC (CMP-Ne 35.2 53 0.0011 22.6 3.2 11 76-86 2-12 (174)
438 PRK02228 V-type ATP synthase s 35.2 1.2E+02 0.0027 19.4 4.8 41 76-119 2-42 (100)
439 COG0826 Collagenase and relate 35.0 2.4E+02 0.0052 22.7 10.6 103 5-116 48-159 (347)
440 PRK11382 frlB fructoselysine-6 34.9 67 0.0015 25.4 4.1 27 6-32 106-132 (340)
441 PRK10060 RNase II stability mo 34.8 3E+02 0.0066 23.8 8.9 109 5-117 540-658 (663)
442 PRK05429 gamma-glutamyl kinase 34.8 38 0.00081 27.3 2.7 82 1-86 28-114 (372)
443 PF04056 Ssl1: Ssl1-like; Int 34.6 1.8E+02 0.004 21.3 6.3 59 7-74 118-176 (193)
444 PLN03063 alpha,alpha-trehalose 34.6 74 0.0016 28.5 4.6 39 3-42 532-571 (797)
445 TIGR00682 lpxK tetraacyldisacc 34.5 56 0.0012 25.7 3.5 88 6-98 45-145 (311)
446 PF06437 ISN1: IMP-specific 5' 34.4 43 0.00094 27.4 2.9 40 8-47 171-210 (408)
447 TIGR02193 heptsyl_trn_I lipopo 34.3 2.1E+02 0.0046 21.9 9.3 83 6-102 198-281 (319)
448 CHL00202 argB acetylglutamate 34.0 1.1E+02 0.0023 23.7 5.0 44 3-48 39-82 (284)
449 PF14824 Sirohm_synth_M: Siroh 34.0 69 0.0015 16.1 2.7 22 18-39 3-24 (30)
450 TIGR01369 CPSaseII_lrg carbamo 33.9 47 0.001 30.6 3.4 92 10-102 482-596 (1050)
451 COG1213 Predicted sugar nucleo 33.7 1E+02 0.0022 23.5 4.6 37 9-45 35-72 (239)
452 cd03018 PRX_AhpE_like Peroxire 33.6 1.4E+02 0.003 19.8 5.1 38 5-43 48-85 (149)
453 TIGR01501 MthylAspMutase methy 33.5 1.6E+02 0.0035 20.2 6.7 17 10-26 43-59 (134)
454 PRK12314 gamma-glutamyl kinase 33.5 43 0.00093 25.6 2.7 78 6-85 34-114 (266)
455 cd01147 HemV-2 Metal binding p 33.4 1.9E+02 0.0042 21.2 6.3 61 72-134 73-137 (262)
456 COG0535 Predicted Fe-S oxidore 33.4 1.1E+02 0.0024 23.5 5.0 44 1-45 75-121 (347)
457 KOG1014 17 beta-hydroxysteroid 33.3 2.3E+02 0.0051 22.5 6.7 57 11-71 65-123 (312)
458 TIGR00623 sula cell division i 33.3 93 0.002 22.4 4.2 41 62-102 72-117 (168)
459 KOG0205 Plasma membrane H+-tra 33.3 1.4E+02 0.0031 26.5 5.9 90 5-97 494-607 (942)
460 PF11848 DUF3368: Domain of un 33.3 45 0.00098 18.4 2.1 14 7-20 20-33 (48)
461 PF01297 TroA: Periplasmic sol 33.3 1.2E+02 0.0026 22.7 5.0 38 7-44 187-224 (256)
462 TIGR03151 enACPred_II putative 33.3 2.4E+02 0.0051 22.1 9.6 87 10-102 100-191 (307)
463 PF13911 AhpC-TSA_2: AhpC/TSA 33.0 1.4E+02 0.0029 19.2 6.1 34 10-44 4-37 (115)
464 cd04726 KGPDC_HPS 3-Keto-L-gul 32.8 1.8E+02 0.0039 20.6 8.7 92 8-104 92-189 (202)
465 PRK11557 putative DNA-binding 32.8 71 0.0015 24.1 3.8 27 5-31 188-214 (278)
466 PHA03050 glutaredoxin; Provisi 32.6 1.4E+02 0.0031 19.4 8.0 84 9-94 3-93 (108)
467 PRK01045 ispH 4-hydroxy-3-meth 32.6 2.5E+02 0.0054 22.1 8.0 28 58-85 97-124 (298)
468 PLN02389 biotin synthase 32.3 1.7E+02 0.0037 23.7 6.1 44 3-47 150-193 (379)
469 smart00540 LEM in nuclear memb 32.3 48 0.001 18.3 2.0 31 9-40 9-39 (44)
470 TIGR01027 proB glutamate 5-kin 31.7 46 0.001 26.7 2.7 74 6-84 25-104 (363)
471 PLN03064 alpha,alpha-trehalose 31.6 98 0.0021 28.4 4.9 38 4-42 623-661 (934)
472 PRK15482 transcriptional regul 31.6 82 0.0018 24.0 4.0 27 4-30 194-220 (285)
473 PF13686 DrsE_2: DsrE/DsrF/Drs 31.6 54 0.0012 22.9 2.7 22 5-26 90-111 (148)
474 PF07859 Abhydrolase_3: alpha/ 31.4 25 0.00055 25.0 1.1 27 60-86 53-82 (211)
475 PF09949 DUF2183: Uncharacteri 31.4 1.1E+02 0.0024 19.8 4.0 30 58-89 50-80 (100)
476 PF01053 Cys_Met_Meta_PP: Cys/ 31.3 2.9E+02 0.0062 22.5 8.0 94 2-100 101-198 (386)
477 cd00291 SirA_YedF_YeeD SirA, Y 31.2 54 0.0012 19.0 2.4 42 2-44 10-52 (69)
478 PF01976 DUF116: Protein of un 31.2 80 0.0017 22.3 3.6 34 8-44 75-108 (158)
479 PRK13936 phosphoheptose isomer 31.2 90 0.002 22.6 4.0 24 6-29 125-148 (197)
480 PF00201 UDPGT: UDP-glucoronos 31.1 48 0.001 27.3 2.8 62 80-142 370-431 (500)
481 cd04724 Tryptophan_synthase_al 31.0 2.3E+02 0.005 21.2 9.1 96 5-102 115-216 (242)
482 cd03036 ArsC_like Arsenate Red 30.9 88 0.0019 20.4 3.5 16 58-73 36-51 (111)
483 COG4502 5'(3')-deoxyribonucleo 30.8 58 0.0013 23.0 2.7 78 4-97 69-150 (180)
484 cd05007 SIS_Etherase N-acetylm 30.8 95 0.0021 23.6 4.2 26 5-30 131-156 (257)
485 cd03017 PRX_BCP Peroxiredoxin 30.8 1.6E+02 0.0034 19.3 7.6 37 6-43 44-80 (140)
486 PF01055 Glyco_hydro_31: Glyco 30.6 62 0.0013 26.4 3.3 25 2-26 79-103 (441)
487 PRK01906 tetraacyldisaccharide 30.6 65 0.0014 25.7 3.3 88 6-98 73-173 (338)
488 COG0422 ThiC Thiamine biosynth 30.6 2.7E+02 0.0059 23.0 6.7 82 9-105 166-268 (432)
489 PRK00881 purH bifunctional pho 30.5 2.5E+02 0.0054 24.0 6.8 34 5-44 14-47 (513)
490 PLN02382 probable sucrose-phos 30.4 1.1E+02 0.0024 25.1 4.7 34 10-44 36-69 (413)
491 cd02072 Glm_B12_BD B12 binding 30.3 1.4E+02 0.0031 20.3 4.5 18 9-26 40-57 (128)
492 PRK05340 UDP-2,3-diacylglucosa 30.1 1.4E+02 0.003 22.1 4.9 38 6-43 57-94 (241)
493 cd08573 GDPD_GDE1 Glycerophosp 30.0 1.4E+02 0.003 22.6 5.0 35 9-44 218-252 (258)
494 KOG0832 Mitochondrial/chloropl 29.9 2.5E+02 0.0055 21.4 6.1 88 9-102 98-204 (251)
495 COG2241 CobL Precorrin-6B meth 29.9 2.4E+02 0.0051 21.0 10.0 87 19-114 68-161 (210)
496 COG1817 Uncharacterized protei 29.8 3E+02 0.0064 22.2 8.8 108 8-119 16-129 (346)
497 PF05988 DUF899: Bacterial pro 29.8 1.3E+02 0.0028 22.5 4.5 41 6-49 93-133 (211)
498 PRK00994 F420-dependent methyl 29.7 2.6E+02 0.0057 21.5 9.5 82 18-102 30-117 (277)
499 COG4018 Uncharacterized protei 29.7 1.5E+02 0.0032 24.1 5.1 56 63-119 211-270 (505)
500 cd06844 STAS Sulphate Transpor 29.7 1.5E+02 0.0031 18.5 4.7 35 8-45 60-94 (100)
No 1
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=99.87 E-value=7.8e-22 Score=149.12 Aligned_cols=105 Identities=14% Similarity=0.159 Sum_probs=96.5
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccc---eecCCCCCcHHHHHHHHHHcCCCCCcEE
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAK---EIFSSWSHKTDHFQRIHSRTGVPFNSML 78 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~---~~~~~~kp~~~~~~~~~~~~~~~~~~~v 78 (147)
..++||+.++|+.|+++|++++|+||+. ...++..++++|+.+||+.+ +.+...||+|+.|..++++++++|++|+
T Consensus 107 ~~l~pgv~e~L~~L~~~g~~l~I~Tn~~-~~~~~~~l~~~gl~~~Fd~iv~~~~~~~~KP~p~~~~~a~~~~~~~~~~~l 185 (248)
T PLN02770 107 LKPLNGLYKLKKWIEDRGLKRAAVTNAP-RENAELMISLLGLSDFFQAVIIGSECEHAKPHPDPYLKALEVLKVSKDHTF 185 (248)
T ss_pred CCcCccHHHHHHHHHHcCCeEEEEeCCC-HHHHHHHHHHcCChhhCcEEEecCcCCCCCCChHHHHHHHHHhCCChhHEE
Confidence 3689999999999999999999999888 77789999999999999985 5566789999999999999999999999
Q ss_pred EEeCCcccHHHHHHcCCeEEEECCCCChH
Q 032106 79 FFDDEDRNIDAVSKMGVTGILVGNGVNLG 107 (147)
Q Consensus 79 ~VgDs~~Di~~a~~~Gi~~i~v~~~~~~~ 107 (147)
||||+..|+++|+++|+.+|++.++...+
T Consensus 186 ~vgDs~~Di~aA~~aGi~~i~v~~g~~~~ 214 (248)
T PLN02770 186 VFEDSVSGIKAGVAAGMPVVGLTTRNPES 214 (248)
T ss_pred EEcCCHHHHHHHHHCCCEEEEEeCCCCHH
Confidence 99999999999999999999999886443
No 2
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=99.87 E-value=1.2e-21 Score=142.93 Aligned_cols=102 Identities=20% Similarity=0.342 Sum_probs=94.3
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccc---eecCCCCCcHHHHHHHHHHcCCCCCcEEE
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAK---EIFSSWSHKTDHFQRIHSRTGVPFNSMLF 79 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~---~~~~~~kp~~~~~~~~~~~~~~~~~~~v~ 79 (147)
.++||+.++|+.|+++|++++|+||++ ...++..++.+|+..+|+.+ +.++..||++++|..+++++|+.|++++|
T Consensus 92 ~~~~~~~~~L~~L~~~g~~~~i~Sn~~-~~~~~~~l~~~gl~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~p~~~~~ 170 (198)
T TIGR01428 92 PPHPDVPAGLRALKERGYRLAILSNGS-PAMLKSLVKHAGLDDPFDAVLSADAVRAYKPAPQVYQLALEALGVPPDEVLF 170 (198)
T ss_pred CCCCCHHHHHHHHHHCCCeEEEEeCCC-HHHHHHHHHHCCChhhhheeEehhhcCCCCCCHHHHHHHHHHhCCChhhEEE
Confidence 578999999999999999999999988 67778899999999999885 56677899999999999999999999999
Q ss_pred EeCCcccHHHHHHcCCeEEEECCCCC
Q 032106 80 FDDEDRNIDAVSKMGVTGILVGNGVN 105 (147)
Q Consensus 80 VgDs~~Di~~a~~~Gi~~i~v~~~~~ 105 (147)
|||+..|+.+|+++|+.+|++.++..
T Consensus 171 vgD~~~Di~~A~~~G~~~i~v~r~~~ 196 (198)
T TIGR01428 171 VASNPWDLGGAKKFGFKTAWVNRPGE 196 (198)
T ss_pred EeCCHHHHHHHHHCCCcEEEecCCCC
Confidence 99999999999999999999987643
No 3
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=99.86 E-value=2.9e-21 Score=142.54 Aligned_cols=104 Identities=14% Similarity=0.138 Sum_probs=95.6
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccc---eecCCCCCcHHHHHHHHHHcCCCCCcEEE
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAK---EIFSSWSHKTDHFQRIHSRTGVPFNSMLF 79 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~---~~~~~~kp~~~~~~~~~~~~~~~~~~~v~ 79 (147)
.++||+.++|+.|+++|++++|+||+. ...++..++.+|+..||+.+ +.+...||++..|..+++++++.|++++|
T Consensus 82 ~~~~g~~~~l~~L~~~g~~~~i~S~~~-~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~~ 160 (214)
T PRK13288 82 TEYETVYETLKTLKKQGYKLGIVTTKM-RDTVEMGLKLTGLDEFFDVVITLDDVEHAKPDPEPVLKALELLGAKPEEALM 160 (214)
T ss_pred ccCcCHHHHHHHHHHCCCeEEEEeCCC-HHHHHHHHHHcCChhceeEEEecCcCCCCCCCcHHHHHHHHHcCCCHHHEEE
Confidence 589999999999999999999999887 67778899999999999885 55567899999999999999999999999
Q ss_pred EeCCcccHHHHHHcCCeEEEECCCCChH
Q 032106 80 FDDEDRNIDAVSKMGVTGILVGNGVNLG 107 (147)
Q Consensus 80 VgDs~~Di~~a~~~Gi~~i~v~~~~~~~ 107 (147)
|||+.+|+++|+++|+.+++|.|+....
T Consensus 161 iGDs~~Di~aa~~aG~~~i~v~~g~~~~ 188 (214)
T PRK13288 161 VGDNHHDILAGKNAGTKTAGVAWTIKGR 188 (214)
T ss_pred ECCCHHHHHHHHHCCCeEEEEcCCCCCH
Confidence 9999999999999999999999986543
No 4
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=99.86 E-value=3.2e-21 Score=141.52 Aligned_cols=105 Identities=16% Similarity=0.230 Sum_probs=95.6
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccc---eecCCCCCcHHHHHHHHHHcCCCCCcEE
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAK---EIFSSWSHKTDHFQRIHSRTGVPFNSML 78 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~---~~~~~~kp~~~~~~~~~~~~~~~~~~~v 78 (147)
..++||+.++|+.|+++|++++|+||+. ...++..++.+|+.++|+.+ +.+..+||++.+|..++++++++|++++
T Consensus 74 ~~~~~g~~~~L~~L~~~g~~~~i~Sn~~-~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~l 152 (205)
T TIGR01454 74 VEVFPGVPELLAELRADGVGTAIATGKS-GPRARSLLEALGLLPLFDHVIGSDEVPRPKPAPDIVREALRLLDVPPEDAV 152 (205)
T ss_pred cccCCCHHHHHHHHHHCCCeEEEEeCCc-hHHHHHHHHHcCChhheeeEEecCcCCCCCCChHHHHHHHHHcCCChhheE
Confidence 3689999999999999999999999887 66678899999999999875 4456689999999999999999999999
Q ss_pred EEeCCcccHHHHHHcCCeEEEECCCCChH
Q 032106 79 FFDDEDRNIDAVSKMGVTGILVGNGVNLG 107 (147)
Q Consensus 79 ~VgDs~~Di~~a~~~Gi~~i~v~~~~~~~ 107 (147)
||||+..|+.+|+++|+.++++.||....
T Consensus 153 ~igD~~~Di~aA~~~Gi~~i~~~~g~~~~ 181 (205)
T TIGR01454 153 MVGDAVTDLASARAAGTATVAALWGEGDA 181 (205)
T ss_pred EEcCCHHHHHHHHHcCCeEEEEEecCCCh
Confidence 99999999999999999999999997643
No 5
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=99.86 E-value=4.3e-21 Score=142.74 Aligned_cols=103 Identities=21% Similarity=0.315 Sum_probs=95.6
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccc---eecCCCCCcHHHHHHHHHHcCCCCCcEE
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAK---EIFSSWSHKTDHFQRIHSRTGVPFNSML 78 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~---~~~~~~kp~~~~~~~~~~~~~~~~~~~v 78 (147)
..+|||+.++|..|+.+|++++|+||++ ...++.+++++|+..||+.+ +.....||+|..+..++.++|++|++++
T Consensus 88 ~~~~~gv~e~L~~L~~~g~~l~i~T~k~-~~~~~~~l~~~gl~~~F~~i~g~~~~~~~KP~P~~l~~~~~~~~~~~~~~l 166 (220)
T COG0546 88 SRLFPGVKELLAALKSAGYKLGIVTNKP-ERELDILLKALGLADYFDVIVGGDDVPPPKPDPEPLLLLLEKLGLDPEEAL 166 (220)
T ss_pred CccCCCHHHHHHHHHhCCCeEEEEeCCc-HHHHHHHHHHhCCccccceEEcCCCCCCCCcCHHHHHHHHHHhCCChhheE
Confidence 3689999999999999999999999888 67779999999999999986 3466799999999999999999988999
Q ss_pred EEeCCcccHHHHHHcCCeEEEECCCCC
Q 032106 79 FFDDEDRNIDAVSKMGVTGILVGNGVN 105 (147)
Q Consensus 79 ~VgDs~~Di~~a~~~Gi~~i~v~~~~~ 105 (147)
||||+.+|+++|+++|+.+++|.||+.
T Consensus 167 ~VGDs~~Di~aA~~Ag~~~v~v~~g~~ 193 (220)
T COG0546 167 MVGDSLNDILAAKAAGVPAVGVTWGYN 193 (220)
T ss_pred EECCCHHHHHHHHHcCCCEEEEECCCC
Confidence 999999999999999999999999974
No 6
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=99.85 E-value=5.4e-21 Score=144.58 Aligned_cols=103 Identities=11% Similarity=0.072 Sum_probs=93.8
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCccccc-ccc---eecCCCCCcHHHHHHHHHHcCCC-CCc
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMF-VAK---EIFSSWSHKTDHFQRIHSRTGVP-FNS 76 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f-~~~---~~~~~~kp~~~~~~~~~~~~~~~-~~~ 76 (147)
..++||+.++|+.|+++|++++|+||+. ...++.+++++|+..|| +.+ +.+...||+|++|..+++++|+. |++
T Consensus 98 ~~~~pg~~e~L~~L~~~g~~l~IvT~~~-~~~~~~~l~~~gl~~~f~d~ii~~~~~~~~KP~p~~~~~a~~~l~~~~~~~ 176 (253)
T TIGR01422 98 SSPIPGVIEVIAYLRARGIKIGSTTGYT-REMMDVVAPEAALQGYRPDYNVTTDDVPAGRPAPWMALKNAIELGVYDVAA 176 (253)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEECCCc-HHHHHHHHHHHHhcCCCCceEEccccCCCCCCCHHHHHHHHHHcCCCCchh
Confidence 3689999999999999999999999888 77778999999999986 653 55567899999999999999995 999
Q ss_pred EEEEeCCcccHHHHHHcCCeEEEECCCCC
Q 032106 77 MLFFDDEDRNIDAVSKMGVTGILVGNGVN 105 (147)
Q Consensus 77 ~v~VgDs~~Di~~a~~~Gi~~i~v~~~~~ 105 (147)
|+||||+..|+++|+++|+.+|+|.+|..
T Consensus 177 ~l~IGDs~~Di~aA~~aGi~~i~v~~g~~ 205 (253)
T TIGR01422 177 CVKVGDTVPDIEEGRNAGMWTVGLILSSN 205 (253)
T ss_pred eEEECCcHHHHHHHHHCCCeEEEEecCCc
Confidence 99999999999999999999999999875
No 7
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=99.85 E-value=6.4e-21 Score=140.98 Aligned_cols=102 Identities=20% Similarity=0.335 Sum_probs=93.9
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccc---eecCCCCCcHHHHHHHHHHcCCCCCcEEE
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAK---EIFSSWSHKTDHFQRIHSRTGVPFNSMLF 79 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~---~~~~~~kp~~~~~~~~~~~~~~~~~~~v~ 79 (147)
.++||+.++|+.|+++|++++|+||+. ...++..++.+|+..||+.+ +.++..||++++|..+++++|+.|++++|
T Consensus 94 ~~~~g~~~~L~~L~~~g~~~~i~Tn~~-~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~ 172 (221)
T TIGR02253 94 RVYPGVRDTLMELRESGYRLGIITDGL-PVKQWEKLERLGVRDFFDAVITSEEEGVEKPHPKIFYAALKRLGVKPEEAVM 172 (221)
T ss_pred CCCCCHHHHHHHHHHCCCEEEEEeCCc-hHHHHHHHHhCChHHhccEEEEeccCCCCCCCHHHHHHHHHHcCCChhhEEE
Confidence 689999999999999999999999987 56668889999999999875 55677899999999999999999999999
Q ss_pred EeCCc-ccHHHHHHcCCeEEEECCCCC
Q 032106 80 FDDED-RNIDAVSKMGVTGILVGNGVN 105 (147)
Q Consensus 80 VgDs~-~Di~~a~~~Gi~~i~v~~~~~ 105 (147)
|||+. +|+.+|+++|+.+|++.++..
T Consensus 173 igDs~~~di~~A~~aG~~~i~~~~~~~ 199 (221)
T TIGR02253 173 VGDRLDKDIKGAKNLGMKTVWINQGKS 199 (221)
T ss_pred ECCChHHHHHHHHHCCCEEEEECCCCC
Confidence 99998 799999999999999988764
No 8
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=99.85 E-value=7.1e-21 Score=139.89 Aligned_cols=104 Identities=23% Similarity=0.425 Sum_probs=95.0
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccc---eecCCCCCcHHHHHHHHHHcCCCCCcEE
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAK---EIFSSWSHKTDHFQRIHSRTGVPFNSML 78 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~---~~~~~~kp~~~~~~~~~~~~~~~~~~~v 78 (147)
..++||+.++|+.|+++|++++|+||+. ...++.+++++|+..+|+.+ +.+...||+|+.|..+++++|+.|++++
T Consensus 84 ~~~~~g~~~~L~~l~~~g~~~~i~S~~~-~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~ 162 (213)
T TIGR01449 84 TSVFPGVEATLGALRAKGLRLGLVTNKP-TPLARPLLELLGLAKYFSVLIGGDSLAQRKPHPDPLLLAAERLGVAPQQMV 162 (213)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEeCCC-HHHHHHHHHHcCcHhhCcEEEecCCCCCCCCChHHHHHHHHHcCCChhHeE
Confidence 4689999999999999999999999887 67778999999999999875 4455689999999999999999999999
Q ss_pred EEeCCcccHHHHHHcCCeEEEECCCCCh
Q 032106 79 FFDDEDRNIDAVSKMGVTGILVGNGVNL 106 (147)
Q Consensus 79 ~VgDs~~Di~~a~~~Gi~~i~v~~~~~~ 106 (147)
||||+.+|+.+|+++|+.++++.++...
T Consensus 163 ~igDs~~d~~aa~~aG~~~i~v~~g~~~ 190 (213)
T TIGR01449 163 YVGDSRVDIQAARAAGCPSVLLTYGYRY 190 (213)
T ss_pred EeCCCHHHHHHHHHCCCeEEEEccCCCC
Confidence 9999999999999999999999987653
No 9
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=99.85 E-value=7.8e-21 Score=142.04 Aligned_cols=103 Identities=17% Similarity=0.273 Sum_probs=94.2
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccc---eecCCCCCcHHHHHHHHHHcCCCCCcEE
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAK---EIFSSWSHKTDHFQRIHSRTGVPFNSML 78 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~---~~~~~~kp~~~~~~~~~~~~~~~~~~~v 78 (147)
..++||+.++|+.|+++|++++|+||+. ...+...++++|+..+|+.+ +..+..||+|++|..+++++|++|++|+
T Consensus 94 ~~~~pg~~~~L~~L~~~g~~l~i~Tn~~-~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~p~~~~~~~~~l~~~p~~~l 172 (229)
T PRK13226 94 SQLFDGVEGMLQRLECAGCVWGIVTNKP-EYLARLILPQLGWEQRCAVLIGGDTLAERKPHPLPLLVAAERIGVAPTDCV 172 (229)
T ss_pred CeeCCCHHHHHHHHHHCCCeEEEECCCC-HHHHHHHHHHcCchhcccEEEecCcCCCCCCCHHHHHHHHHHhCCChhhEE
Confidence 4689999999999999999999999887 67777889999999999875 4456789999999999999999999999
Q ss_pred EEeCCcccHHHHHHcCCeEEEECCCCC
Q 032106 79 FFDDEDRNIDAVSKMGVTGILVGNGVN 105 (147)
Q Consensus 79 ~VgDs~~Di~~a~~~Gi~~i~v~~~~~ 105 (147)
||||+.+|+.+|+++|+.++++.++..
T Consensus 173 ~IGDs~~Di~aA~~aG~~~i~v~~g~~ 199 (229)
T PRK13226 173 YVGDDERDILAARAAGMPSVAALWGYR 199 (229)
T ss_pred EeCCCHHHHHHHHHCCCcEEEEeecCC
Confidence 999999999999999999999998874
No 10
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=99.85 E-value=7.4e-21 Score=136.81 Aligned_cols=116 Identities=25% Similarity=0.358 Sum_probs=99.3
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcc---------cccccc---eecCCCCCcHHHHHHHHHH
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIK---------SMFVAK---EIFSSWSHKTDHFQRIHSR 69 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~---------~~f~~~---~~~~~~kp~~~~~~~~~~~ 69 (147)
..+|||+.++|+.|+++|++++|+||+.....++..+..+++. .+|+.+ +.....||.+..++.+.+.
T Consensus 44 ~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~~~l~~~~~~~~~~~~Fd~iv~~~~~~~~kp~~~i~~~~~~~ 123 (174)
T TIGR01685 44 VTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTFEITYAGKTVPMHSLFDDRIEIYKPNKAKQLEMILQKVNKV 123 (174)
T ss_pred EEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHhCCcCCCCCcccHHHhceeeeeccCCchHHHHHHHHHHhhhc
Confidence 3689999999999999999999999883377778899999998 899885 2323345556666666666
Q ss_pred c--CCCCCcEEEEeCCcccHHHHHHcCCeEEEECCCCChHHHHHHHHHHH
Q 032106 70 T--GVPFNSMLFFDDEDRNIDAVSKMGVTGILVGNGVNLGALRQGLTKFS 117 (147)
Q Consensus 70 ~--~~~~~~~v~VgDs~~Di~~a~~~Gi~~i~v~~~~~~~~~~~~l~~~~ 117 (147)
+ |+.|++|+||||+..|+++|+++|+.++++.++....++.+.+++|+
T Consensus 124 ~~~gl~p~e~l~VgDs~~di~aA~~aGi~~i~v~~g~~~~~~~~~~~~~~ 173 (174)
T TIGR01685 124 DPSVLKPAQILFFDDRTDNVREVWGYGVTSCYCPSGMDKGTFKKILEMWR 173 (174)
T ss_pred ccCCCCHHHeEEEcChhHhHHHHHHhCCEEEEcCCCccHHHHHHHHHHhc
Confidence 6 79999999999999999999999999999999999999999999986
No 11
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=99.85 E-value=1.5e-20 Score=139.61 Aligned_cols=104 Identities=18% Similarity=0.254 Sum_probs=95.3
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccc---eecCCCCCcHHHHHHHHHHcCCCCCcEE
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAK---EIFSSWSHKTDHFQRIHSRTGVPFNSML 78 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~---~~~~~~kp~~~~~~~~~~~~~~~~~~~v 78 (147)
..++||+.++|+.|+++|++++|+||+. ...++.+++.+++..+|+.+ +.++..||+++.|+.+++++|+.|++|+
T Consensus 91 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~-~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~ 169 (222)
T PRK10826 91 RPLLPGVREALALCKAQGLKIGLASASP-LHMLEAVLTMFDLRDYFDALASAEKLPYSKPHPEVYLNCAAKLGVDPLTCV 169 (222)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCc-HHHHHHHHHhCcchhcccEEEEcccCCCCCCCHHHHHHHHHHcCCCHHHeE
Confidence 3689999999999999999999999887 67778899999999999885 4555689999999999999999999999
Q ss_pred EEeCCcccHHHHHHcCCeEEEECCCCCh
Q 032106 79 FFDDEDRNIDAVSKMGVTGILVGNGVNL 106 (147)
Q Consensus 79 ~VgDs~~Di~~a~~~Gi~~i~v~~~~~~ 106 (147)
||||+.+|+++|+++|+.++++.++...
T Consensus 170 ~igDs~~Di~aA~~aG~~~i~v~~~~~~ 197 (222)
T PRK10826 170 ALEDSFNGMIAAKAARMRSIVVPAPEQQ 197 (222)
T ss_pred EEcCChhhHHHHHHcCCEEEEecCCccC
Confidence 9999999999999999999999987654
No 12
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=99.84 E-value=1.4e-20 Score=140.42 Aligned_cols=103 Identities=21% Similarity=0.271 Sum_probs=93.0
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccc---eecCCCCCcHHHHHHHHHHcCCCCCcEE
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAK---EIFSSWSHKTDHFQRIHSRTGVPFNSML 78 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~---~~~~~~kp~~~~~~~~~~~~~~~~~~~v 78 (147)
..++||+.++|+.|+++|++++|+||+. ...++..++.+|+..||+.+ +.++..||+|+.|..+++++|++|++|+
T Consensus 92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~-~~~~~~~l~~~~l~~~fd~iv~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l 170 (224)
T PRK14988 92 AVLREDTVPFLEALKASGKRRILLTNAH-PHNLAVKLEHTGLDAHLDLLLSTHTFGYPKEDQRLWQAVAEHTGLKAERTL 170 (224)
T ss_pred CCcCCCHHHHHHHHHhCCCeEEEEeCcC-HHHHHHHHHHCCcHHHCCEEEEeeeCCCCCCCHHHHHHHHHHcCCChHHEE
Confidence 3689999999999999999999999887 67778889999999999875 5667799999999999999999999999
Q ss_pred EEeCCcccHHHHHHcCCe-EEEECCCCC
Q 032106 79 FFDDEDRNIDAVSKMGVT-GILVGNGVN 105 (147)
Q Consensus 79 ~VgDs~~Di~~a~~~Gi~-~i~v~~~~~ 105 (147)
||||+..|+++|+++|+. +++|..+.+
T Consensus 171 ~igDs~~di~aA~~aG~~~~~~v~~~~~ 198 (224)
T PRK14988 171 FIDDSEPILDAAAQFGIRYCLGVTNPDS 198 (224)
T ss_pred EEcCCHHHHHHHHHcCCeEEEEEeCCCC
Confidence 999999999999999997 577877554
No 13
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=99.84 E-value=1.1e-20 Score=133.34 Aligned_cols=98 Identities=26% Similarity=0.473 Sum_probs=91.3
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccc---eecCCCCCcHHHHHHHHHHcCCCCCcEE
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAK---EIFSSWSHKTDHFQRIHSRTGVPFNSML 78 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~---~~~~~~kp~~~~~~~~~~~~~~~~~~~v 78 (147)
++++||+.++|+.|+++|++++++||+. ...++..++.+|+..+|+.+ +..+..||++.+|..+++++|+.|++++
T Consensus 76 ~~~~~~~~~~L~~l~~~~~~~~i~Sn~~-~~~~~~~l~~~~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p~~~~ 154 (176)
T PF13419_consen 76 LQPYPGVRELLERLKAKGIPLVIVSNGS-RERIERVLERLGLDDYFDEIISSDDVGSRKPDPDAYRRALEKLGIPPEEIL 154 (176)
T ss_dssp EEESTTHHHHHHHHHHTTSEEEEEESSE-HHHHHHHHHHTTHGGGCSEEEEGGGSSSSTTSHHHHHHHHHHHTSSGGGEE
T ss_pred cchhhhhhhhhhhcccccceeEEeecCC-cccccccccccccccccccccccchhhhhhhHHHHHHHHHHHcCCCcceEE
Confidence 4689999999999999999999999887 77778999999999999885 5567799999999999999999999999
Q ss_pred EEeCCcccHHHHHHcCCeEEEE
Q 032106 79 FFDDEDRNIDAVSKMGVTGILV 100 (147)
Q Consensus 79 ~VgDs~~Di~~a~~~Gi~~i~v 100 (147)
||||+..|+.+|+++|+.+|+|
T Consensus 155 ~vgD~~~d~~~A~~~G~~~i~v 176 (176)
T PF13419_consen 155 FVGDSPSDVEAAKEAGIKTIWV 176 (176)
T ss_dssp EEESSHHHHHHHHHTTSEEEEE
T ss_pred EEeCCHHHHHHHHHcCCeEEeC
Confidence 9999999999999999999986
No 14
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=99.84 E-value=1.7e-20 Score=142.91 Aligned_cols=98 Identities=20% Similarity=0.300 Sum_probs=91.6
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccc---eecCCCCCcHHHHHHHHHHcCCCCCcEEE
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAK---EIFSSWSHKTDHFQRIHSRTGVPFNSMLF 79 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~---~~~~~~kp~~~~~~~~~~~~~~~~~~~v~ 79 (147)
.++||+.++|+.|+++|++++|+||+. ...++..++++|+..||+.+ +.+...||+|++|..+++++|+.|++|+|
T Consensus 109 ~l~pg~~e~L~~L~~~g~~l~I~Tn~~-~~~~~~~l~~~gl~~~Fd~ii~~~d~~~~KP~Pe~~~~a~~~l~~~p~~~l~ 187 (260)
T PLN03243 109 RLRPGSREFVQALKKHEIPIAVASTRP-RRYLERAIEAVGMEGFFSVVLAAEDVYRGKPDPEMFMYAAERLGFIPERCIV 187 (260)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEeCcC-HHHHHHHHHHcCCHhhCcEEEecccCCCCCCCHHHHHHHHHHhCCChHHeEE
Confidence 579999999999999999999999887 67778999999999999985 55566899999999999999999999999
Q ss_pred EeCCcccHHHHHHcCCeEEEEC
Q 032106 80 FDDEDRNIDAVSKMGVTGILVG 101 (147)
Q Consensus 80 VgDs~~Di~~a~~~Gi~~i~v~ 101 (147)
|||+..|+++|+++|+.++++.
T Consensus 188 IgDs~~Di~aA~~aG~~~i~v~ 209 (260)
T PLN03243 188 FGNSNSSVEAAHDGCMKCVAVA 209 (260)
T ss_pred EcCCHHHHHHHHHcCCEEEEEe
Confidence 9999999999999999999996
No 15
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=99.84 E-value=2.5e-20 Score=136.42 Aligned_cols=108 Identities=22% Similarity=0.347 Sum_probs=92.6
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHh-cCcccccccc---eecCCCCCcHHHHHHHHHHcCCCCCcEE
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEK-LNIKSMFVAK---EIFSSWSHKTDHFQRIHSRTGVPFNSML 78 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~-~gl~~~f~~~---~~~~~~kp~~~~~~~~~~~~~~~~~~~v 78 (147)
.++||+.++|+.|+++|++++|+||++ .......+.. .++..+|+.+ +.++..||+|+.|+.+++++|+.|++|+
T Consensus 84 ~~~~g~~e~L~~l~~~g~~~~i~Sn~~-~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l 162 (199)
T PRK09456 84 ALRPEVIAIMHKLREQGHRVVVLSNTN-RLHTTFWPEEYPEVRAAADHIYLSQDLGMRKPEARIYQHVLQAEGFSAADAV 162 (199)
T ss_pred ccCHHHHHHHHHHHhCCCcEEEEcCCc-hhhHHHHHhhchhHHHhcCEEEEecccCCCCCCHHHHHHHHHHcCCChhHeE
Confidence 478999999999999999999999987 4444444444 4778888875 5667799999999999999999999999
Q ss_pred EEeCCcccHHHHHHcCCeEEEECCCCChHHHHH
Q 032106 79 FFDDEDRNIDAVSKMGVTGILVGNGVNLGALRQ 111 (147)
Q Consensus 79 ~VgDs~~Di~~a~~~Gi~~i~v~~~~~~~~~~~ 111 (147)
||||+..|+.+|+++|+.++++.++....+...
T Consensus 163 ~vgD~~~di~aA~~aG~~~i~~~~~~~~~~~l~ 195 (199)
T PRK09456 163 FFDDNADNIEAANALGITSILVTDKQTIPDYFA 195 (199)
T ss_pred EeCCCHHHHHHHHHcCCEEEEecCCccHHHHHH
Confidence 999999999999999999999988776654443
No 16
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=99.84 E-value=1.6e-20 Score=135.09 Aligned_cols=96 Identities=28% Similarity=0.368 Sum_probs=87.7
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccc---eecCCCCCcHHHHHHHHHHcCCCCCcEEE
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAK---EIFSSWSHKTDHFQRIHSRTGVPFNSMLF 79 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~---~~~~~~kp~~~~~~~~~~~~~~~~~~~v~ 79 (147)
.++||+.++|+.|+++|++++|+||+.. .+..++.+|+..+|+.+ +..+..||+|+.|..++++++++|++++|
T Consensus 87 ~~~pg~~~~L~~L~~~g~~~~i~s~~~~---~~~~l~~~~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~v~ 163 (185)
T TIGR01990 87 DVLPGIKNLLDDLKKNNIKIALASASKN---APTVLEKLGLIDYFDAIVDPAEIKKGKPDPEIFLAAAEGLGVSPSECIG 163 (185)
T ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCcc---HHHHHHhcCcHhhCcEEEehhhcCCCCCChHHHHHHHHHcCCCHHHeEE
Confidence 6899999999999999999999997653 35789999999999885 55567899999999999999999999999
Q ss_pred EeCCcccHHHHHHcCCeEEEEC
Q 032106 80 FDDEDRNIDAVSKMGVTGILVG 101 (147)
Q Consensus 80 VgDs~~Di~~a~~~Gi~~i~v~ 101 (147)
|||+.+|+.+|+++|+.+|+|+
T Consensus 164 vgD~~~di~aA~~aG~~~i~v~ 185 (185)
T TIGR01990 164 IEDAQAGIEAIKAAGMFAVGVG 185 (185)
T ss_pred EecCHHHHHHHHHcCCEEEecC
Confidence 9999999999999999999874
No 17
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=99.84 E-value=3.3e-20 Score=137.26 Aligned_cols=105 Identities=25% Similarity=0.273 Sum_probs=94.6
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcc--cccccc---eecCCCCCcHHHHHHHHHHcCCC-CC
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIK--SMFVAK---EIFSSWSHKTDHFQRIHSRTGVP-FN 75 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~--~~f~~~---~~~~~~kp~~~~~~~~~~~~~~~-~~ 75 (147)
+.++||+.++|+.|+++|++++|+||+. ...++..++.+|+. .+|+.+ +.....||+|++|..+++++++. |+
T Consensus 86 ~~l~~G~~~~L~~L~~~g~~~~ivT~~~-~~~~~~~l~~~~l~~~~~f~~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~ 164 (220)
T TIGR03351 86 PVALPGAEEAFRSLRSSGIKVALTTGFD-RDTAERLLEKLGWTVGDDVDAVVCPSDVAAGRPAPDLILRAMELTGVQDVQ 164 (220)
T ss_pred CccCCCHHHHHHHHHHCCCEEEEEeCCc-hHHHHHHHHHhhhhhhccCCEEEcCCcCCCCCCCHHHHHHHHHHcCCCChh
Confidence 4799999999999999999999999888 67778999999998 899885 44456899999999999999997 79
Q ss_pred cEEEEeCCcccHHHHHHcCCeE-EEECCCCChH
Q 032106 76 SMLFFDDEDRNIDAVSKMGVTG-ILVGNGVNLG 107 (147)
Q Consensus 76 ~~v~VgDs~~Di~~a~~~Gi~~-i~v~~~~~~~ 107 (147)
+|+||||+..|+++|+++|+.+ +++.++....
T Consensus 165 ~~~~igD~~~Di~aa~~aG~~~~i~~~~g~~~~ 197 (220)
T TIGR03351 165 SVAVAGDTPNDLEAGINAGAGAVVGVLTGAHDA 197 (220)
T ss_pred HeEEeCCCHHHHHHHHHCCCCeEEEEecCCCcH
Confidence 9999999999999999999999 9998876543
No 18
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=99.84 E-value=3.3e-20 Score=147.29 Aligned_cols=103 Identities=13% Similarity=0.188 Sum_probs=95.2
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccc---eecCCCCCcHHHHHHHHHHcCCCCCcEEE
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAK---EIFSSWSHKTDHFQRIHSRTGVPFNSMLF 79 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~---~~~~~~kp~~~~~~~~~~~~~~~~~~~v~ 79 (147)
.++||+.++|+.|+++|++++|+||+. ...++..++.+|+..||+.+ +.+...||+|++|..+++++|+.|++|+|
T Consensus 216 ~l~pGa~ElL~~Lk~~GiklaIaSn~~-~~~~~~~L~~lgL~~yFd~Iv~sddv~~~KP~Peifl~A~~~lgl~Peecl~ 294 (381)
T PLN02575 216 RLRTGSQEFVNVLMNYKIPMALVSTRP-RKTLENAIGSIGIRGFFSVIVAAEDVYRGKPDPEMFIYAAQLLNFIPERCIV 294 (381)
T ss_pred CcCcCHHHHHHHHHHCCCeEEEEeCCC-HHHHHHHHHHcCCHHHceEEEecCcCCCCCCCHHHHHHHHHHcCCCcccEEE
Confidence 589999999999999999999999888 77789999999999999986 55566899999999999999999999999
Q ss_pred EeCCcccHHHHHHcCCeEEEECCCCCh
Q 032106 80 FDDEDRNIDAVSKMGVTGILVGNGVNL 106 (147)
Q Consensus 80 VgDs~~Di~~a~~~Gi~~i~v~~~~~~ 106 (147)
|||+..|+++|+++|+.+|+|.++...
T Consensus 295 IGDS~~DIeAAk~AGm~~IgV~~~~~~ 321 (381)
T PLN02575 295 FGNSNQTVEAAHDARMKCVAVASKHPI 321 (381)
T ss_pred EcCCHHHHHHHHHcCCEEEEECCCCCh
Confidence 999999999999999999999876533
No 19
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=99.83 E-value=5.6e-20 Score=140.21 Aligned_cols=103 Identities=13% Similarity=0.063 Sum_probs=92.3
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCccccc-ccc---eecCCCCCcHHHHHHHHHHcCCC-CCc
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMF-VAK---EIFSSWSHKTDHFQRIHSRTGVP-FNS 76 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f-~~~---~~~~~~kp~~~~~~~~~~~~~~~-~~~ 76 (147)
+.++||+.++|+.|+++|++++|+||+. ...++.+++.+++.++| +.+ +.+...||+|++|..+++++|+. +++
T Consensus 100 ~~~~pg~~elL~~L~~~g~~l~I~T~~~-~~~~~~~l~~~~l~~~~~d~i~~~~~~~~~KP~p~~~~~a~~~l~~~~~~e 178 (267)
T PRK13478 100 ATPIPGVLEVIAALRARGIKIGSTTGYT-REMMDVVVPLAAAQGYRPDHVVTTDDVPAGRPYPWMALKNAIELGVYDVAA 178 (267)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEcCCc-HHHHHHHHHHHhhcCCCceEEEcCCcCCCCCCChHHHHHHHHHcCCCCCcc
Confidence 4689999999999999999999999887 66778889999888875 553 45566899999999999999996 699
Q ss_pred EEEEeCCcccHHHHHHcCCeEEEECCCCC
Q 032106 77 MLFFDDEDRNIDAVSKMGVTGILVGNGVN 105 (147)
Q Consensus 77 ~v~VgDs~~Di~~a~~~Gi~~i~v~~~~~ 105 (147)
|+||||+.+|+++|+++|+.+|+|.+++.
T Consensus 179 ~l~IGDs~~Di~aA~~aG~~~i~v~~g~~ 207 (267)
T PRK13478 179 CVKVDDTVPGIEEGLNAGMWTVGVILSGN 207 (267)
T ss_pred eEEEcCcHHHHHHHHHCCCEEEEEccCcc
Confidence 99999999999999999999999999875
No 20
>PLN02811 hydrolase
Probab=99.83 E-value=7e-20 Score=136.00 Aligned_cols=105 Identities=20% Similarity=0.243 Sum_probs=89.0
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccc---e--ecCCCCCcHHHHHHHHHHcC---CC
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAK---E--IFSSWSHKTDHFQRIHSRTG---VP 73 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~---~--~~~~~kp~~~~~~~~~~~~~---~~ 73 (147)
..++||+.++|+.|+++|++++|+||+..........+..++.++|+.+ + .+...||+|++|..++++++ +.
T Consensus 77 ~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~~~f~~i~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~~ 156 (220)
T PLN02811 77 SDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELFSLMHHVVTGDDPEVKQGKPAPDIFLAAARRFEDGPVD 156 (220)
T ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHHhhCCEEEECChhhccCCCCCcHHHHHHHHHhCCCCCC
Confidence 3679999999999999999999999887333433344445778888875 4 55678999999999999997 99
Q ss_pred CCcEEEEeCCcccHHHHHHcCCeEEEECCCCCh
Q 032106 74 FNSMLFFDDEDRNIDAVSKMGVTGILVGNGVNL 106 (147)
Q Consensus 74 ~~~~v~VgDs~~Di~~a~~~Gi~~i~v~~~~~~ 106 (147)
|++|+||||+..|+++|+++|+.+|+|.++...
T Consensus 157 ~~~~v~IgDs~~di~aA~~aG~~~i~v~~~~~~ 189 (220)
T PLN02811 157 PGKVLVFEDAPSGVEAAKNAGMSVVMVPDPRLD 189 (220)
T ss_pred ccceEEEeccHhhHHHHHHCCCeEEEEeCCCCc
Confidence 999999999999999999999999999887644
No 21
>PRK11587 putative phosphatase; Provisional
Probab=99.82 E-value=9.8e-20 Score=134.99 Aligned_cols=102 Identities=15% Similarity=0.114 Sum_probs=89.1
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccc---eecCCCCCcHHHHHHHHHHcCCCCCcEE
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAK---EIFSSWSHKTDHFQRIHSRTGVPFNSML 78 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~---~~~~~~kp~~~~~~~~~~~~~~~~~~~v 78 (147)
..++||+.++|+.|+++|++++|+||+. ...+...++..++ .+|+.+ +.+...||+|+.|..+++++|+.|++|+
T Consensus 82 ~~~~pg~~e~L~~L~~~g~~~~ivTn~~-~~~~~~~l~~~~l-~~~~~i~~~~~~~~~KP~p~~~~~~~~~~g~~p~~~l 159 (218)
T PRK11587 82 ITALPGAIALLNHLNKLGIPWAIVTSGS-VPVASARHKAAGL-PAPEVFVTAERVKRGKPEPDAYLLGAQLLGLAPQECV 159 (218)
T ss_pred ceeCcCHHHHHHHHHHcCCcEEEEcCCC-chHHHHHHHhcCC-CCccEEEEHHHhcCCCCCcHHHHHHHHHcCCCcccEE
Confidence 3689999999999999999999999887 4555777888888 455543 4556689999999999999999999999
Q ss_pred EEeCCcccHHHHHHcCCeEEEECCCCC
Q 032106 79 FFDDEDRNIDAVSKMGVTGILVGNGVN 105 (147)
Q Consensus 79 ~VgDs~~Di~~a~~~Gi~~i~v~~~~~ 105 (147)
||||+..|+++|+++|+.++++.++..
T Consensus 160 ~igDs~~di~aA~~aG~~~i~v~~~~~ 186 (218)
T PRK11587 160 VVEDAPAGVLSGLAAGCHVIAVNAPAD 186 (218)
T ss_pred EEecchhhhHHHHHCCCEEEEECCCCc
Confidence 999999999999999999999987653
No 22
>PRK06769 hypothetical protein; Validated
Probab=99.82 E-value=8.9e-20 Score=131.22 Aligned_cols=105 Identities=19% Similarity=0.277 Sum_probs=88.5
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCCh-------HHHHHHHHhcCcccccccc----eecCCCCCcHHHHHHHHHHcC
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSP-------DIANTFLEKLNIKSMFVAK----EIFSSWSHKTDHFQRIHSRTG 71 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~-------~~~~~~l~~~gl~~~f~~~----~~~~~~kp~~~~~~~~~~~~~ 71 (147)
.++||+.++|+.|+++|++++|+||+... ......++.+|+..+|... +.....||++.+|..++++++
T Consensus 28 ~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~KP~p~~~~~~~~~l~ 107 (173)
T PRK06769 28 TLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGFGFDDIYLCPHKHGDGCECRKPSTGMLLQAAEKHG 107 (173)
T ss_pred EECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhCCcCEEEECcCCCCCCCCCCCCCHHHHHHHHHHcC
Confidence 57999999999999999999999987521 0123447788888877542 334568999999999999999
Q ss_pred CCCCcEEEEeCCcccHHHHHHcCCeEEEECCCCChH
Q 032106 72 VPFNSMLFFDDEDRNIDAVSKMGVTGILVGNGVNLG 107 (147)
Q Consensus 72 ~~~~~~v~VgDs~~Di~~a~~~Gi~~i~v~~~~~~~ 107 (147)
+.|++|+||||+..|+.+|+++|+.+|++.++.+..
T Consensus 108 ~~p~~~i~IGD~~~Di~aA~~aGi~~i~v~~g~~~~ 143 (173)
T PRK06769 108 LDLTQCAVIGDRWTDIVAAAKVNATTILVRTGAGYD 143 (173)
T ss_pred CCHHHeEEEcCCHHHHHHHHHCCCeEEEEecCCCch
Confidence 999999999999999999999999999999987543
No 23
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=99.82 E-value=1.1e-19 Score=130.30 Aligned_cols=97 Identities=23% Similarity=0.374 Sum_probs=87.0
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccc---eecCCCCCcHHHHHHHHHHcCCCCCcEE
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAK---EIFSSWSHKTDHFQRIHSRTGVPFNSML 78 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~---~~~~~~kp~~~~~~~~~~~~~~~~~~~v 78 (147)
..++||+.++|+.|+++|++++|+||+. ... ..++.++|+..+|+.+ +.++..||++..|..+++++|++|++++
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~-~~~-~~~~~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~ 161 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSP-RDH-AVLVQELGLRDLFDVVIFSGDVGRGKPDPDIYLLALKKLGLKPEECL 161 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCc-hHH-HHHHHhcCCHHHCCEEEEcCCCCCCCCCHHHHHHHHHHcCCCcceEE
Confidence 3689999999999999999999999887 454 5566669999999885 4567799999999999999999999999
Q ss_pred EEeCCcccHHHHHHcCCeEEEE
Q 032106 79 FFDDEDRNIDAVSKMGVTGILV 100 (147)
Q Consensus 79 ~VgDs~~Di~~a~~~Gi~~i~v 100 (147)
||||+..|+.+|+++|+.+|+|
T Consensus 162 ~vgD~~~di~aA~~~G~~~i~v 183 (183)
T TIGR01509 162 FVDDSPAGIEAAKAAGMHTVLV 183 (183)
T ss_pred EEcCCHHHHHHHHHcCCEEEeC
Confidence 9999999999999999999975
No 24
>PRK09449 dUMP phosphatase; Provisional
Probab=99.82 E-value=1.3e-19 Score=134.38 Aligned_cols=100 Identities=16% Similarity=0.213 Sum_probs=89.5
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccc---eecCCCCCcHHHHHHHHHHcCCCC-CcE
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAK---EIFSSWSHKTDHFQRIHSRTGVPF-NSM 77 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~---~~~~~~kp~~~~~~~~~~~~~~~~-~~~ 77 (147)
..++||+.++|+.|+ +|++++|+||+. ...++..++.+|+.++|+.+ +..+..||++++|..+++++|+.+ ++|
T Consensus 94 ~~~~~g~~~~L~~L~-~~~~~~i~Tn~~-~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~ 171 (224)
T PRK09449 94 CTPLPGAVELLNALR-GKVKMGIITNGF-TELQQVRLERTGLRDYFDLLVISEQVGVAKPDVAIFDYALEQMGNPDRSRV 171 (224)
T ss_pred CccCccHHHHHHHHH-hCCeEEEEeCCc-HHHHHHHHHhCChHHHcCEEEEECccCCCCCCHHHHHHHHHHcCCCCcccE
Confidence 368999999999999 579999999987 67778899999999999986 555668999999999999999854 899
Q ss_pred EEEeCCc-ccHHHHHHcCCeEEEECCC
Q 032106 78 LFFDDED-RNIDAVSKMGVTGILVGNG 103 (147)
Q Consensus 78 v~VgDs~-~Di~~a~~~Gi~~i~v~~~ 103 (147)
+||||+. .|+.+|+++|+.++++.++
T Consensus 172 ~~vgD~~~~Di~~A~~aG~~~i~~~~~ 198 (224)
T PRK09449 172 LMVGDNLHSDILGGINAGIDTCWLNAH 198 (224)
T ss_pred EEEcCCcHHHHHHHHHCCCcEEEECCC
Confidence 9999998 6999999999999999853
No 25
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=99.81 E-value=1e-19 Score=133.17 Aligned_cols=95 Identities=21% Similarity=0.319 Sum_probs=86.4
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccc---eecCCCCCcHHHHHHHHHHcCCCCCcEEE
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAK---EIFSSWSHKTDHFQRIHSRTGVPFNSMLF 79 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~---~~~~~~kp~~~~~~~~~~~~~~~~~~~v~ 79 (147)
.++||+.++|+.|+++|++++|+||+. ... +..++.+|+..+|+.+ +.++..||++++|..+++++|++|++++|
T Consensus 105 ~~~~g~~~~l~~L~~~g~~~~i~Sn~~-~~~-~~~l~~~~l~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~ 182 (203)
T TIGR02252 105 QVYPDAIKLLKDLRERGLILGVISNFD-SRL-RGLLEALGLLEYFDFVVTSYEVGAEKPDPKIFQEALERAGISPEEALH 182 (203)
T ss_pred eeCcCHHHHHHHHHHCCCEEEEEeCCc-hhH-HHHHHHCCcHHhcceEEeecccCCCCCCHHHHHHHHHHcCCChhHEEE
Confidence 579999999999999999999999886 444 7789999999999885 45667899999999999999999999999
Q ss_pred EeCCc-ccHHHHHHcCCeEEE
Q 032106 80 FDDED-RNIDAVSKMGVTGIL 99 (147)
Q Consensus 80 VgDs~-~Di~~a~~~Gi~~i~ 99 (147)
|||+. .|+.+|+++|+.+||
T Consensus 183 IgD~~~~Di~~A~~aG~~~i~ 203 (203)
T TIGR02252 183 IGDSLRNDYQGARAAGWRALL 203 (203)
T ss_pred ECCCchHHHHHHHHcCCeeeC
Confidence 99998 799999999999885
No 26
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=99.81 E-value=1.1e-19 Score=130.68 Aligned_cols=96 Identities=26% Similarity=0.362 Sum_probs=87.2
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccc---eecCCCCCcHHHHHHHHHHcCCCCCcEE
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAK---EIFSSWSHKTDHFQRIHSRTGVPFNSML 78 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~---~~~~~~kp~~~~~~~~~~~~~~~~~~~v 78 (147)
..++||+.++|+.|+++|++++|+||+ ..++.+++.+|+..||+.+ +..+..||++++|..+++++++.|++++
T Consensus 87 ~~~~~g~~~~l~~l~~~g~~i~i~S~~---~~~~~~l~~~~l~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v 163 (185)
T TIGR02009 87 AEVLPGIENFLKRLKKKGIAVGLGSSS---KNADRILAKLGLTDYFDAIVDADEVKEGKPHPETFLLAAELLGVSPNECV 163 (185)
T ss_pred CCCCcCHHHHHHHHHHcCCeEEEEeCc---hhHHHHHHHcChHHHCCEeeehhhCCCCCCChHHHHHHHHHcCCCHHHeE
Confidence 478999999999999999999999976 3357889999999999875 4455689999999999999999999999
Q ss_pred EEeCCcccHHHHHHcCCeEEEE
Q 032106 79 FFDDEDRNIDAVSKMGVTGILV 100 (147)
Q Consensus 79 ~VgDs~~Di~~a~~~Gi~~i~v 100 (147)
||||+..|+++|+++|+.+++|
T Consensus 164 ~IgD~~~di~aA~~~G~~~i~v 185 (185)
T TIGR02009 164 VFEDALAGVQAARAAGMFAVAV 185 (185)
T ss_pred EEeCcHhhHHHHHHCCCeEeeC
Confidence 9999999999999999999875
No 27
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=99.81 E-value=1.8e-19 Score=126.30 Aligned_cols=101 Identities=22% Similarity=0.300 Sum_probs=84.4
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCCh--------------HHHHHHHHhcCccc--ccccc----eecCCCCCcHHH
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSP--------------DIANTFLEKLNIKS--MFVAK----EIFSSWSHKTDH 62 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~--------------~~~~~~l~~~gl~~--~f~~~----~~~~~~kp~~~~ 62 (147)
+++||+.++|+.|+++|++++|+||+... ..+...++.+++.. +|... +.....||++++
T Consensus 27 ~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~KP~~~~ 106 (147)
T TIGR01656 27 QLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLGVAVDGVLFCPHHPADNCSCRKPKPGL 106 (147)
T ss_pred EEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCCCceeEEEECCCCCCCCCCCCCCCHHH
Confidence 46999999999999999999999987621 34466788899862 22221 233457999999
Q ss_pred HHHHHHHcCCCCCcEEEEeCCcccHHHHHHcCCeEEEECCC
Q 032106 63 FQRIHSRTGVPFNSMLFFDDEDRNIDAVSKMGVTGILVGNG 103 (147)
Q Consensus 63 ~~~~~~~~~~~~~~~v~VgDs~~Di~~a~~~Gi~~i~v~~~ 103 (147)
|+.+++++++++++|+||||+..|+++|+++|+.++++.+|
T Consensus 107 ~~~~~~~~~~~~~e~i~IGDs~~Di~~A~~~Gi~~v~i~~~ 147 (147)
T TIGR01656 107 ILEALKRLGVDASRSLVVGDRLRDLQAARNAGLAAVLLVDG 147 (147)
T ss_pred HHHHHHHcCCChHHEEEEcCCHHHHHHHHHCCCCEEEecCC
Confidence 99999999999999999999999999999999999999864
No 28
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=99.81 E-value=1.7e-19 Score=132.78 Aligned_cols=103 Identities=23% Similarity=0.308 Sum_probs=87.1
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHH-HHHHHHhcCcccccccc---eecCCCCCcHHHHHHHHHHcCCCCCcEE
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDI-ANTFLEKLNIKSMFVAK---EIFSSWSHKTDHFQRIHSRTGVPFNSML 78 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~-~~~~l~~~gl~~~f~~~---~~~~~~kp~~~~~~~~~~~~~~~~~~~v 78 (147)
.++||+.++|+.|+++|++++|+||+..... ....+..+++..+|+.+ +..+..||+|.+|..+++++|+.|++|+
T Consensus 94 ~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~g~~~~~~l 173 (211)
T TIGR02247 94 KLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIMALFDAVVESCLEGLRKPDPRIYQLMLERLGVAPEECV 173 (211)
T ss_pred ccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhHhhCCEEEEeeecCCCCCCHHHHHHHHHHcCCCHHHeE
Confidence 5799999999999999999999998763221 22334456788899885 4456689999999999999999999999
Q ss_pred EEeCCcccHHHHHHcCCeEEEECCCCC
Q 032106 79 FFDDEDRNIDAVSKMGVTGILVGNGVN 105 (147)
Q Consensus 79 ~VgDs~~Di~~a~~~Gi~~i~v~~~~~ 105 (147)
||||+..|+.+|+++|+.++++.++..
T Consensus 174 ~i~D~~~di~aA~~aG~~~i~v~~~~~ 200 (211)
T TIGR02247 174 FLDDLGSNLKPAAALGITTIKVSDEEQ 200 (211)
T ss_pred EEcCCHHHHHHHHHcCCEEEEECCHHH
Confidence 999999999999999999999987543
No 29
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=99.80 E-value=3.3e-19 Score=131.75 Aligned_cols=102 Identities=15% Similarity=0.175 Sum_probs=92.6
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccc---eecCCCCCcHHHHHHHHHHc-CCCCCcE
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAK---EIFSSWSHKTDHFQRIHSRT-GVPFNSM 77 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~---~~~~~~kp~~~~~~~~~~~~-~~~~~~~ 77 (147)
+.++||+.++|+.|+++ ++++|+||+. ...++..++.+++..+|+.+ +..+..||++.+|..+++++ |+.|+++
T Consensus 96 ~~~~~g~~~~L~~l~~~-~~~~i~Sn~~-~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~ 173 (224)
T TIGR02254 96 HQLLPGAFELMENLQQK-FRLYIVTNGV-RETQYKRLRKSGLFPFFDDIFVSEDAGIQKPDKEIFNYALERMPKFSKEEV 173 (224)
T ss_pred CeeCccHHHHHHHHHhc-CcEEEEeCCc-hHHHHHHHHHCCcHhhcCEEEEcCccCCCCCCHHHHHHHHHHhcCCCchhe
Confidence 46899999999999999 9999999988 67778899999999999986 44566899999999999999 9999999
Q ss_pred EEEeCCc-ccHHHHHHcCCeEEEECCCCC
Q 032106 78 LFFDDED-RNIDAVSKMGVTGILVGNGVN 105 (147)
Q Consensus 78 v~VgDs~-~Di~~a~~~Gi~~i~v~~~~~ 105 (147)
+||||+. .|+.+|+++|+.++++.++..
T Consensus 174 v~igD~~~~di~~A~~~G~~~i~~~~~~~ 202 (224)
T TIGR02254 174 LMIGDSLTADIKGGQNAGLDTCWMNPDMH 202 (224)
T ss_pred EEECCCcHHHHHHHHHCCCcEEEECCCCC
Confidence 9999998 799999999999999987643
No 30
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=99.80 E-value=2.8e-19 Score=136.94 Aligned_cols=103 Identities=21% Similarity=0.388 Sum_probs=93.8
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccc---eecCCCCCcHHHHHHHHHHcCCCCCcEE
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAK---EIFSSWSHKTDHFQRIHSRTGVPFNSML 78 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~---~~~~~~kp~~~~~~~~~~~~~~~~~~~v 78 (147)
..++||+.++|+.|+++|++++|+||+. ...++.+++.+++..||+.+ +.++..||++.+|+.+++++|+.|++|+
T Consensus 100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~-~~~~~~~l~~~~i~~~f~~i~~~d~~~~~Kp~p~~~~~~~~~~g~~~~~~l 178 (272)
T PRK13223 100 TVVYPGVRDTLKWLKKQGVEMALITNKP-ERFVAPLLDQMKIGRYFRWIIGGDTLPQKKPDPAALLFVMKMAGVPPSQSL 178 (272)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEECCc-HHHHHHHHHHcCcHhhCeEEEecCCCCCCCCCcHHHHHHHHHhCCChhHEE
Confidence 3589999999999999999999999887 66678899999999999874 4456689999999999999999999999
Q ss_pred EEeCCcccHHHHHHcCCeEEEECCCCC
Q 032106 79 FFDDEDRNIDAVSKMGVTGILVGNGVN 105 (147)
Q Consensus 79 ~VgDs~~Di~~a~~~Gi~~i~v~~~~~ 105 (147)
||||+.+|+++|+++|+.+++|.+|+.
T Consensus 179 ~IGD~~~Di~aA~~aGi~~i~v~~G~~ 205 (272)
T PRK13223 179 FVGDSRSDVLAAKAAGVQCVALSYGYN 205 (272)
T ss_pred EECCCHHHHHHHHHCCCeEEEEecCCC
Confidence 999999999999999999999998764
No 31
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=99.80 E-value=4.5e-19 Score=127.67 Aligned_cols=101 Identities=12% Similarity=0.159 Sum_probs=82.8
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCCh--------------HHHHHHHHhcCcccccccc--------------eecC
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSP--------------DIANTFLEKLNIKSMFVAK--------------EIFS 54 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~--------------~~~~~~l~~~gl~~~f~~~--------------~~~~ 54 (147)
.++||+.++|+.|+++|++++|+||++.. ......+..+++. |+.+ +...
T Consensus 26 ~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~i~~~~~~~~~~~~~~~~~~ 103 (176)
T TIGR00213 26 EFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLAERDVD--LDGIYYCPHHPEGVEEFRQVCD 103 (176)
T ss_pred EECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCC--ccEEEECCCCCcccccccCCCC
Confidence 57899999999999999999999988731 1223456666554 3332 1334
Q ss_pred CCCCcHHHHHHHHHHcCCCCCcEEEEeCCcccHHHHHHcCCeE-EEECCCCC
Q 032106 55 SWSHKTDHFQRIHSRTGVPFNSMLFFDDEDRNIDAVSKMGVTG-ILVGNGVN 105 (147)
Q Consensus 55 ~~kp~~~~~~~~~~~~~~~~~~~v~VgDs~~Di~~a~~~Gi~~-i~v~~~~~ 105 (147)
..||++.+|..+++++|+++++++||||+..|+++|+++|+.+ +++.++..
T Consensus 104 ~~KP~p~~~~~a~~~~~~~~~~~v~VGDs~~Di~aA~~aG~~~~i~v~~g~~ 155 (176)
T TIGR00213 104 CRKPKPGMLLQARKELHIDMAQSYMVGDKLEDMQAGVAAKVKTNVLVRTGKP 155 (176)
T ss_pred CCCCCHHHHHHHHHHcCcChhhEEEEcCCHHHHHHHHHCCCcEEEEEecCCc
Confidence 5899999999999999999999999999999999999999998 79988764
No 32
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=99.80 E-value=4.6e-19 Score=132.00 Aligned_cols=102 Identities=22% Similarity=0.305 Sum_probs=87.8
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhc---Ccccccccc-eecCCCCCcHHHHHHHHHHcCCCCCcEE
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKL---NIKSMFVAK-EIFSSWSHKTDHFQRIHSRTGVPFNSML 78 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~---gl~~~f~~~-~~~~~~kp~~~~~~~~~~~~~~~~~~~v 78 (147)
.+|||+.++|+.|+++|++++|+||+. ...++.+++.. ++..||+.. +.....||+++.|..+++++|++|++++
T Consensus 95 ~lypgv~e~L~~Lk~~G~~l~I~Sn~s-~~~~~~~~~~~~~~~L~~~f~~~fd~~~g~KP~p~~y~~i~~~lgv~p~e~l 173 (220)
T TIGR01691 95 HLYPDVPPALEAWLQLGLRLAVYSSGS-VPAQKLLFGHSDAGNLTPYFSGYFDTTVGLKTEAQSYVKIAGQLGSPPREIL 173 (220)
T ss_pred CcCcCHHHHHHHHHHCCCEEEEEeCCC-HHHHHHHHhhccccchhhhcceEEEeCcccCCCHHHHHHHHHHhCcChhHEE
Confidence 589999999999999999999999887 56666777765 565666553 2334479999999999999999999999
Q ss_pred EEeCCcccHHHHHHcCCeEEEECCCCC
Q 032106 79 FFDDEDRNIDAVSKMGVTGILVGNGVN 105 (147)
Q Consensus 79 ~VgDs~~Di~~a~~~Gi~~i~v~~~~~ 105 (147)
||||+..|+++|+++|+.++++.++.+
T Consensus 174 fVgDs~~Di~AA~~AG~~ti~v~r~g~ 200 (220)
T TIGR01691 174 FLSDIINELDAARKAGLHTGQLVRPGN 200 (220)
T ss_pred EEeCCHHHHHHHHHcCCEEEEEECCCC
Confidence 999999999999999999999988653
No 33
>PLN02940 riboflavin kinase
Probab=99.80 E-value=4.1e-19 Score=141.93 Aligned_cols=103 Identities=21% Similarity=0.213 Sum_probs=93.3
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHH-hcCcccccccc---eecCCCCCcHHHHHHHHHHcCCCCCcE
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLE-KLNIKSMFVAK---EIFSSWSHKTDHFQRIHSRTGVPFNSM 77 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~-~~gl~~~f~~~---~~~~~~kp~~~~~~~~~~~~~~~~~~~ 77 (147)
..++||+.++|+.|+++|++++|+||+. ...++..++ .+++.++|+.+ +.+...||+|++|..+++++|+.|++|
T Consensus 92 ~~l~pGv~elL~~Lk~~g~~l~IvTn~~-~~~~~~~l~~~~gl~~~Fd~ii~~d~v~~~KP~p~~~~~a~~~lgv~p~~~ 170 (382)
T PLN02940 92 IKALPGANRLIKHLKSHGVPMALASNSP-RANIEAKISCHQGWKESFSVIVGGDEVEKGKPSPDIFLEAAKRLNVEPSNC 170 (382)
T ss_pred CCCCcCHHHHHHHHHHCCCcEEEEeCCc-HHHHHHHHHhccChHhhCCEEEehhhcCCCCCCHHHHHHHHHHcCCChhHE
Confidence 3689999999999999999999999987 566677776 78999999986 556678999999999999999999999
Q ss_pred EEEeCCcccHHHHHHcCCeEEEECCCCC
Q 032106 78 LFFDDEDRNIDAVSKMGVTGILVGNGVN 105 (147)
Q Consensus 78 v~VgDs~~Di~~a~~~Gi~~i~v~~~~~ 105 (147)
+||||+..|+++|+++|+.++++.++..
T Consensus 171 l~VGDs~~Di~aA~~aGi~~I~v~~g~~ 198 (382)
T PLN02940 171 LVIEDSLPGVMAGKAAGMEVIAVPSIPK 198 (382)
T ss_pred EEEeCCHHHHHHHHHcCCEEEEECCCCc
Confidence 9999999999999999999999998753
No 34
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=99.80 E-value=7.9e-19 Score=129.97 Aligned_cols=103 Identities=27% Similarity=0.400 Sum_probs=94.2
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccc---eecCCCCCcHHHHHHHHHHcCCCCCcEE
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAK---EIFSSWSHKTDHFQRIHSRTGVPFNSML 78 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~---~~~~~~kp~~~~~~~~~~~~~~~~~~~v 78 (147)
+.++||+.++|+.|++.|++++|+||+. ...++.+++.+|+..+|+.+ +.+...||++.+|..+++++++.+++++
T Consensus 92 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~-~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i 170 (226)
T PRK13222 92 SRLYPGVKETLAALKAAGYPLAVVTNKP-TPFVAPLLEALGIADYFSVVIGGDSLPNKKPDPAPLLLACEKLGLDPEEML 170 (226)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEeCCC-HHHHHHHHHHcCCccCccEEEcCCCCCCCCcChHHHHHHHHHcCCChhheE
Confidence 4689999999999999999999999887 67778899999999999874 4455689999999999999999999999
Q ss_pred EEeCCcccHHHHHHcCCeEEEECCCCC
Q 032106 79 FFDDEDRNIDAVSKMGVTGILVGNGVN 105 (147)
Q Consensus 79 ~VgDs~~Di~~a~~~Gi~~i~v~~~~~ 105 (147)
||||+.+|+++|+++|+.+++|.++..
T Consensus 171 ~igD~~~Di~~a~~~g~~~i~v~~g~~ 197 (226)
T PRK13222 171 FVGDSRNDIQAARAAGCPSVGVTYGYN 197 (226)
T ss_pred EECCCHHHHHHHHHCCCcEEEECcCCC
Confidence 999999999999999999999998875
No 35
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=99.79 E-value=9.4e-19 Score=134.98 Aligned_cols=103 Identities=17% Similarity=0.156 Sum_probs=88.6
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccc---cc--eecCCCCCcHHHHHHHHHHcCCCCCcE
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFV---AK--EIFSSWSHKTDHFQRIHSRTGVPFNSM 77 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~---~~--~~~~~~kp~~~~~~~~~~~~~~~~~~~ 77 (147)
.++||+.++|+.|+++|++++|+||+. ...+..+++.++...+|. .+ +.+...||+|++|..+++++|+.|++|
T Consensus 144 ~l~pGv~elL~~L~~~g~~l~IvTn~~-~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~KP~p~~~~~a~~~~~~~p~~~ 222 (286)
T PLN02779 144 PLRPGVLRLMDEALAAGIKVAVCSTSN-EKAVSKIVNTLLGPERAQGLDVFAGDDVPKKKPDPDIYNLAAETLGVDPSRC 222 (286)
T ss_pred CchhhHHHHHHHHHHCCCeEEEEeCCC-HHHHHHHHHHhccccccCceEEEeccccCCCCCCHHHHHHHHHHhCcChHHE
Confidence 689999999999999999999999987 566677777764334443 22 455668999999999999999999999
Q ss_pred EEEeCCcccHHHHHHcCCeEEEECCCCCh
Q 032106 78 LFFDDEDRNIDAVSKMGVTGILVGNGVNL 106 (147)
Q Consensus 78 v~VgDs~~Di~~a~~~Gi~~i~v~~~~~~ 106 (147)
+||||+..|+++|+++|+.+|+|.++...
T Consensus 223 l~IGDs~~Di~aA~~aG~~~i~v~~g~~~ 251 (286)
T PLN02779 223 VVVEDSVIGLQAAKAAGMRCIVTKSSYTA 251 (286)
T ss_pred EEEeCCHHhHHHHHHcCCEEEEEccCCcc
Confidence 99999999999999999999999887653
No 36
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=99.79 E-value=1.3e-18 Score=133.36 Aligned_cols=104 Identities=19% Similarity=0.394 Sum_probs=92.3
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHHcCCCCCcEEEEeC
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLFFDD 82 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgD 82 (147)
+++||+.++|+.|+++|++++|+||+. ...++..++.+|+.++|+.+.......+++..|..+++++++.|++|+||||
T Consensus 142 ~l~pg~~e~L~~L~~~gi~laIvSn~~-~~~~~~~L~~~gl~~~F~~vi~~~~~~~k~~~~~~~l~~~~~~p~~~l~IGD 220 (273)
T PRK13225 142 QLFPGVADLLAQLRSRSLCLGILSSNS-RQNIEAFLQRQGLRSLFSVVQAGTPILSKRRALSQLVAREGWQPAAVMYVGD 220 (273)
T ss_pred CcCCCHHHHHHHHHHCCCeEEEEeCCC-HHHHHHHHHHcCChhheEEEEecCCCCCCHHHHHHHHHHhCcChhHEEEECC
Confidence 689999999999999999999999888 6777899999999999987522222346789999999999999999999999
Q ss_pred CcccHHHHHHcCCeEEEECCCCChH
Q 032106 83 EDRNIDAVSKMGVTGILVGNGVNLG 107 (147)
Q Consensus 83 s~~Di~~a~~~Gi~~i~v~~~~~~~ 107 (147)
+..|+.+|+++|+.+|+|.++....
T Consensus 221 s~~Di~aA~~AG~~~I~v~~g~~~~ 245 (273)
T PRK13225 221 ETRDVEAARQVGLIAVAVTWGFNDR 245 (273)
T ss_pred CHHHHHHHHHCCCeEEEEecCCCCH
Confidence 9999999999999999999987653
No 37
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=99.79 E-value=6e-19 Score=131.45 Aligned_cols=102 Identities=25% Similarity=0.320 Sum_probs=94.6
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccc---eecCCCCCcHHHHHHHHHHcCCCCCcEEE
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAK---EIFSSWSHKTDHFQRIHSRTGVPFNSMLF 79 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~---~~~~~~kp~~~~~~~~~~~~~~~~~~~v~ 79 (147)
.++||+.++|+.|+.+|++++++|++. +..++..+..+|+.+||+.+ +.+...||+|+.|..+++++|+.|++||.
T Consensus 86 ~~~pGv~~~l~~L~~~~i~~avaS~s~-~~~~~~~L~~~gl~~~f~~~v~~~dv~~~KP~Pd~yL~Aa~~Lgv~P~~Cvv 164 (221)
T COG0637 86 KPIPGVVELLEQLKARGIPLAVASSSP-RRAAERVLARLGLLDYFDVIVTADDVARGKPAPDIYLLAAERLGVDPEECVV 164 (221)
T ss_pred CCCccHHHHHHHHHhcCCcEEEecCCh-HHHHHHHHHHccChhhcchhccHHHHhcCCCCCHHHHHHHHHcCCChHHeEE
Confidence 689999999999999999999999887 67778999999999999984 66667899999999999999999999999
Q ss_pred EeCCcccHHHHHHcCCeEEEECCCCC
Q 032106 80 FDDEDRNIDAVSKMGVTGILVGNGVN 105 (147)
Q Consensus 80 VgDs~~Di~~a~~~Gi~~i~v~~~~~ 105 (147)
|+|+..++++|+++||.++++..+..
T Consensus 165 iEDs~~Gi~Aa~aAGm~vv~v~~~~~ 190 (221)
T COG0637 165 VEDSPAGIQAAKAAGMRVVGVPAGHD 190 (221)
T ss_pred EecchhHHHHHHHCCCEEEEecCCCC
Confidence 99999999999999999999998544
No 38
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.79 E-value=8.7e-19 Score=129.86 Aligned_cols=100 Identities=21% Similarity=0.295 Sum_probs=92.1
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccc---eecCCCCCcHHHHHHHHHHcCCCCCcEEE
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAK---EIFSSWSHKTDHFQRIHSRTGVPFNSMLF 79 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~---~~~~~~kp~~~~~~~~~~~~~~~~~~~v~ 79 (147)
.++|++.++|+.|+.. ++++|+||+. ...+...+.++||.++|+.+ +.++..||++.+|+.+++++|+.|++++|
T Consensus 99 ~~~~~~~~~L~~l~~~-~~l~ilTNg~-~~~~~~~l~~~gl~~~Fd~v~~s~~~g~~KP~~~~f~~~~~~~g~~p~~~l~ 176 (229)
T COG1011 99 PDYPEALEALKELGKK-YKLGILTNGA-RPHQERKLRQLGLLDYFDAVFISEDVGVAKPDPEIFEYALEKLGVPPEEALF 176 (229)
T ss_pred ccChhHHHHHHHHHhh-ccEEEEeCCC-hHHHHHHHHHcCChhhhheEEEecccccCCCCcHHHHHHHHHcCCCcceEEE
Confidence 6789999999999999 9999999987 66678999999999999996 67778999999999999999999999999
Q ss_pred EeCCcc-cHHHHHHcCCeEEEECCCC
Q 032106 80 FDDEDR-NIDAVSKMGVTGILVGNGV 104 (147)
Q Consensus 80 VgDs~~-Di~~a~~~Gi~~i~v~~~~ 104 (147)
|||+.. |+.+|+++||.++|+.++.
T Consensus 177 VgD~~~~di~gA~~~G~~~vwi~~~~ 202 (229)
T COG1011 177 VGDSLENDILGARALGMKTVWINRGG 202 (229)
T ss_pred ECCChhhhhHHHHhcCcEEEEECCCC
Confidence 999988 6699999999999998765
No 39
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=99.79 E-value=7.8e-19 Score=125.03 Aligned_cols=99 Identities=11% Similarity=0.162 Sum_probs=85.8
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCC--------------ChHHHHHHHHhcCcccccccc--------eecCCCCCcH
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSP--------------SPDIANTFLEKLNIKSMFVAK--------EIFSSWSHKT 60 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~--------------~~~~~~~~l~~~gl~~~f~~~--------~~~~~~kp~~ 60 (147)
.++||+.++|+.|+++|++++|+||.. ....+..+++.+|+. |+.+ +.....||++
T Consensus 29 ~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~gl~--fd~ii~~~~~~~~~~~~~KP~~ 106 (161)
T TIGR01261 29 RFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQGII--FDDVLICPHFPDDNCDCRKPKI 106 (161)
T ss_pred eECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHCCCc--eeEEEECCCCCCCCCCCCCCCH
Confidence 478999999999999999999999863 123456788999996 6432 3445689999
Q ss_pred HHHHHHHHHcCCCCCcEEEEeCCcccHHHHHHcCCeEEEECCC
Q 032106 61 DHFQRIHSRTGVPFNSMLFFDDEDRNIDAVSKMGVTGILVGNG 103 (147)
Q Consensus 61 ~~~~~~~~~~~~~~~~~v~VgDs~~Di~~a~~~Gi~~i~v~~~ 103 (147)
.+|..++++++++|++++||||+.+|+++|+++|+.++++.++
T Consensus 107 ~~~~~~~~~~~~~~~e~l~IGD~~~Di~~A~~aGi~~i~~~~~ 149 (161)
T TIGR01261 107 KLLEPYLKKNLIDKARSYVIGDRETDMQLAENLGIRGIQYDEE 149 (161)
T ss_pred HHHHHHHHHcCCCHHHeEEEeCCHHHHHHHHHCCCeEEEEChh
Confidence 9999999999999999999999999999999999999999876
No 40
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=99.79 E-value=1.4e-18 Score=119.34 Aligned_cols=98 Identities=20% Similarity=0.286 Sum_probs=83.4
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCC-------hHHHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHHc-CCCC
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPS-------PDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRT-GVPF 74 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~-------~~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~-~~~~ 74 (147)
.++||+.++|+.|+++|++++|+||+.. ...++..++.+++..+|..... ...||++++|..+++++ +++|
T Consensus 25 ~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~KP~~~~~~~~~~~~~~~~~ 103 (132)
T TIGR01662 25 ILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVPIDVLYACP-HCRKPKPGMFLEALKRFNEIDP 103 (132)
T ss_pred eeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCCEEEEEECC-CCCCCChHHHHHHHHHcCCCCh
Confidence 5789999999999999999999998761 2345778999998644333222 46899999999999999 5999
Q ss_pred CcEEEEeC-CcccHHHHHHcCCeEEEEC
Q 032106 75 NSMLFFDD-EDRNIDAVSKMGVTGILVG 101 (147)
Q Consensus 75 ~~~v~VgD-s~~Di~~a~~~Gi~~i~v~ 101 (147)
++++|||| +..|+.+|+++|+.+|++.
T Consensus 104 ~~~v~IGD~~~~Di~~A~~~Gi~~i~~~ 131 (132)
T TIGR01662 104 EESVYVGDQDLTDLQAAKRAGLAFILVA 131 (132)
T ss_pred hheEEEcCCCcccHHHHHHCCCeEEEee
Confidence 99999999 7999999999999999985
No 41
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=99.79 E-value=2.6e-18 Score=122.84 Aligned_cols=116 Identities=48% Similarity=0.839 Sum_probs=92.5
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcc----------cccccceecCCCCCcHHHHHHHHHHcC
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIK----------SMFVAKEIFSSWSHKTDHFQRIHSRTG 71 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~----------~~f~~~~~~~~~kp~~~~~~~~~~~~~ 71 (147)
..+||+++++|+.|+.+|++++++|.++.+..++.+|+.+++. ++|+..+++.. .|...|+.+.++.|
T Consensus 44 v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~eI~~g--sK~~Hf~~i~~~tg 121 (169)
T PF12689_consen 44 VSLYPDVPEILQELKERGVKLAVASRTDEPDWARELLKLLEIDDADGDGVPLIEYFDYLEIYPG--SKTTHFRRIHRKTG 121 (169)
T ss_dssp E---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHTT-C----------CCECEEEESSS---HHHHHHHHHHHH-
T ss_pred EEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhcCCCccccccccchhhcchhheecC--chHHHHHHHHHhcC
Confidence 3689999999999999999999999888899999999999999 89998777776 89999999999999
Q ss_pred CCCCcEEEEeCCcccHHHHHHcCCeEEEECCCCChHHHHHHHHHHHHh
Q 032106 72 VPFNSMLFFDDEDRNIDAVSKMGVTGILVGNGVNLGALRQGLTKFSQN 119 (147)
Q Consensus 72 ~~~~~~v~VgDs~~Di~~a~~~Gi~~i~v~~~~~~~~~~~~l~~~~~~ 119 (147)
+++++++|++|..++++...+.|+.++.|.+|.+.+.+.++++.|+++
T Consensus 122 I~y~eMlFFDDe~~N~~~v~~lGV~~v~v~~Glt~~~~~~gL~~~~~k 169 (169)
T PF12689_consen 122 IPYEEMLFFDDESRNIEVVSKLGVTCVLVPDGLTWDEFERGLEKFRKK 169 (169)
T ss_dssp --GGGEEEEES-HHHHHHHHTTT-EEEE-SSS--HHHHHHHHHHHHH-
T ss_pred CChhHEEEecCchhcceeeEecCcEEEEeCCCCCHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999864
No 42
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=99.78 E-value=1e-18 Score=126.17 Aligned_cols=96 Identities=24% Similarity=0.329 Sum_probs=87.0
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccc---eecCCCCCcHHHHHHHHHHcCCCCCcEEE
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAK---EIFSSWSHKTDHFQRIHSRTGVPFNSMLF 79 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~---~~~~~~kp~~~~~~~~~~~~~~~~~~~v~ 79 (147)
.++|+ .++|..|++. ++++|+||+. ...++..++++|+..||+.+ +.+...||+|++|..+++++++.|++|||
T Consensus 88 ~~~~~-~e~L~~L~~~-~~l~I~T~~~-~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~l~ 164 (188)
T PRK10725 88 EPLPL-IEVVKAWHGR-RPMAVGTGSE-SAIAEALLAHLGLRRYFDAVVAADDVQHHKPAPDTFLRCAQLMGVQPTQCVV 164 (188)
T ss_pred CCccH-HHHHHHHHhC-CCEEEEcCCc-hHHHHHHHHhCCcHhHceEEEehhhccCCCCChHHHHHHHHHcCCCHHHeEE
Confidence 56786 5899999876 8999999887 67778999999999999986 55667899999999999999999999999
Q ss_pred EeCCcccHHHHHHcCCeEEEEC
Q 032106 80 FDDEDRNIDAVSKMGVTGILVG 101 (147)
Q Consensus 80 VgDs~~Di~~a~~~Gi~~i~v~ 101 (147)
|||+..|+++|+++|+.+|+|.
T Consensus 165 igDs~~di~aA~~aG~~~i~~~ 186 (188)
T PRK10725 165 FEDADFGIQAARAAGMDAVDVR 186 (188)
T ss_pred EeccHhhHHHHHHCCCEEEeec
Confidence 9999999999999999999985
No 43
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=99.78 E-value=1.1e-18 Score=129.34 Aligned_cols=98 Identities=13% Similarity=0.166 Sum_probs=88.0
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCccccccc-c---eecCCCCCcHHHHHHHHHHcCCCCCcE
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVA-K---EIFSSWSHKTDHFQRIHSRTGVPFNSM 77 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~-~---~~~~~~kp~~~~~~~~~~~~~~~~~~~ 77 (147)
..++||+.++|+.| +++++|+||+. ...++..++.+++..+|+. + +.++..||+|++|..+++++|+.|++|
T Consensus 87 ~~~~~gv~~~L~~L---~~~~~ivTn~~-~~~~~~~l~~~~l~~~F~~~v~~~~~~~~~KP~p~~~~~a~~~~~~~p~~~ 162 (221)
T PRK10563 87 LEPIAGANALLESI---TVPMCVVSNGP-VSKMQHSLGKTGMLHYFPDKLFSGYDIQRWKPDPALMFHAAEAMNVNVENC 162 (221)
T ss_pred CCcCCCHHHHHHHc---CCCEEEEeCCc-HHHHHHHHHhcChHHhCcceEeeHHhcCCCCCChHHHHHHHHHcCCCHHHe
Confidence 46899999999999 49999999887 6777889999999999963 3 456778999999999999999999999
Q ss_pred EEEeCCcccHHHHHHcCCeEEEECCC
Q 032106 78 LFFDDEDRNIDAVSKMGVTGILVGNG 103 (147)
Q Consensus 78 v~VgDs~~Di~~a~~~Gi~~i~v~~~ 103 (147)
+||||+..|+++|+++|+.++++..+
T Consensus 163 l~igDs~~di~aA~~aG~~~i~~~~~ 188 (221)
T PRK10563 163 ILVDDSSAGAQSGIAAGMEVFYFCAD 188 (221)
T ss_pred EEEeCcHhhHHHHHHCCCEEEEECCC
Confidence 99999999999999999999999654
No 44
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=99.78 E-value=3.2e-18 Score=123.64 Aligned_cols=102 Identities=20% Similarity=0.220 Sum_probs=84.1
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCCh--------------HHHHHHHHhcCcccccccc--------eecCCCCCcH
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSP--------------DIANTFLEKLNIKSMFVAK--------EIFSSWSHKT 60 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~--------------~~~~~~l~~~gl~~~f~~~--------~~~~~~kp~~ 60 (147)
.++||+.++|+.|+++|++++|+||+... ......++.+|+. |+.+ +.+...||++
T Consensus 29 ~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~--f~~i~~~~~~~~~~~~~~KP~p 106 (181)
T PRK08942 29 IPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLADRGGR--LDGIYYCPHHPEDGCDCRKPKP 106 (181)
T ss_pred EECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCc--cceEEECCCCCCCCCcCCCCCH
Confidence 47899999999999999999999987520 1223456666762 4432 2345689999
Q ss_pred HHHHHHHHHcCCCCCcEEEEeCCcccHHHHHHcCCeEEEECCCCCh
Q 032106 61 DHFQRIHSRTGVPFNSMLFFDDEDRNIDAVSKMGVTGILVGNGVNL 106 (147)
Q Consensus 61 ~~~~~~~~~~~~~~~~~v~VgDs~~Di~~a~~~Gi~~i~v~~~~~~ 106 (147)
.+|..+++++|+.|++++||||+.+|+.+|+++|+.++++.++...
T Consensus 107 ~~~~~~~~~l~~~~~~~~~VgDs~~Di~~A~~aG~~~i~v~~g~~~ 152 (181)
T PRK08942 107 GMLLSIAERLNIDLAGSPMVGDSLRDLQAAAAAGVTPVLVRTGKGV 152 (181)
T ss_pred HHHHHHHHHcCCChhhEEEEeCCHHHHHHHHHCCCeEEEEcCCCCc
Confidence 9999999999999999999999999999999999999999887654
No 45
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=99.77 E-value=1.8e-18 Score=124.92 Aligned_cols=94 Identities=22% Similarity=0.332 Sum_probs=84.5
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccc---eecCC----CCCcHHHHHHHHHHcCCCCC
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAK---EIFSS----WSHKTDHFQRIHSRTGVPFN 75 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~---~~~~~----~kp~~~~~~~~~~~~~~~~~ 75 (147)
.++||+.++|+.|+ ++++|+||+. ...+...++.+|+..+|+.+ +..+. +||+|++|..+++++|+.|+
T Consensus 84 ~~~~g~~~~L~~L~---~~~~i~Tn~~-~~~~~~~l~~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~ 159 (184)
T TIGR01993 84 KPDPELRNLLLRLP---GRKIIFTNGD-RAHARRALNRLGIEDCFDGIFCFDTANPDYLLPKPSPQAYEKALREAGVDPE 159 (184)
T ss_pred CCCHHHHHHHHhCC---CCEEEEeCCC-HHHHHHHHHHcCcHhhhCeEEEeecccCccCCCCCCHHHHHHHHHHhCCCcc
Confidence 57999999999997 5799999988 67778999999999999985 33343 59999999999999999999
Q ss_pred cEEEEeCCcccHHHHHHcCCeEEEE
Q 032106 76 SMLFFDDEDRNIDAVSKMGVTGILV 100 (147)
Q Consensus 76 ~~v~VgDs~~Di~~a~~~Gi~~i~v 100 (147)
+++||||+..|+++|+++|+.+++|
T Consensus 160 ~~l~vgD~~~di~aA~~~G~~~i~v 184 (184)
T TIGR01993 160 RAIFFDDSARNIAAAKALGMKTVLV 184 (184)
T ss_pred ceEEEeCCHHHHHHHHHcCCEEeeC
Confidence 9999999999999999999999875
No 46
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=99.76 E-value=1e-17 Score=120.20 Aligned_cols=99 Identities=19% Similarity=0.241 Sum_probs=85.6
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHHcCCCCCcEEEEeC
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLFFDD 82 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgD 82 (147)
.++||+.++|+.|++.|++++|+||++....++.+++.+++..++ ...||++.+|..+++++++.+++++||||
T Consensus 43 ~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~gl~~~~------~~~KP~p~~~~~~l~~~~~~~~~~l~IGD 116 (170)
T TIGR01668 43 EAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKALGIPVLP------HAVKPPGCAFRRAHPEMGLTSEQVAVVGD 116 (170)
T ss_pred CcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHcCCEEEc------CCCCCChHHHHHHHHHcCCCHHHEEEECC
Confidence 589999999999999999999999886335556667778775332 34799999999999999999999999999
Q ss_pred Cc-ccHHHHHHcCCeEEEECCCCChH
Q 032106 83 ED-RNIDAVSKMGVTGILVGNGVNLG 107 (147)
Q Consensus 83 s~-~Di~~a~~~Gi~~i~v~~~~~~~ 107 (147)
+. .|+.+|+++|+.++++.++....
T Consensus 117 s~~~Di~aA~~aGi~~i~v~~g~~~~ 142 (170)
T TIGR01668 117 RLFTDVMGGNRNGSYTILVEPLVHPD 142 (170)
T ss_pred cchHHHHHHHHcCCeEEEEccCcCCc
Confidence 98 69999999999999999987543
No 47
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=99.75 E-value=5.9e-18 Score=127.22 Aligned_cols=96 Identities=11% Similarity=0.168 Sum_probs=84.8
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccc---eecCCCCCcHHHHHHHHHHcCCCCCcEE
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAK---EIFSSWSHKTDHFQRIHSRTGVPFNSML 78 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~---~~~~~~kp~~~~~~~~~~~~~~~~~~~v 78 (147)
..++||+.++|+.|++. ++++|+||++. . ++.+|+..||+.+ +.++..||++..|..+++++|+.|++|+
T Consensus 112 ~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~-~-----~~~~gl~~~fd~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~ 184 (238)
T PRK10748 112 IDVPQATHDTLKQLAKK-WPLVAITNGNA-Q-----PELFGLGDYFEFVLRAGPHGRSKPFSDMYHLAAEKLNVPIGEIL 184 (238)
T ss_pred CCCCccHHHHHHHHHcC-CCEEEEECCCc-h-----HHHCCcHHhhceeEecccCCcCCCcHHHHHHHHHHcCCChhHEE
Confidence 35789999999999875 99999998873 2 4779999999886 4556689999999999999999999999
Q ss_pred EEeCCc-ccHHHHHHcCCeEEEECCCC
Q 032106 79 FFDDED-RNIDAVSKMGVTGILVGNGV 104 (147)
Q Consensus 79 ~VgDs~-~Di~~a~~~Gi~~i~v~~~~ 104 (147)
||||+. .|+.+|+++|+.++|+.++.
T Consensus 185 ~VGD~~~~Di~~A~~aG~~~i~v~~~~ 211 (238)
T PRK10748 185 HVGDDLTTDVAGAIRCGMQACWINPEN 211 (238)
T ss_pred EEcCCcHHHHHHHHHCCCeEEEEcCCC
Confidence 999995 89999999999999998754
No 48
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.73 E-value=3.5e-17 Score=144.35 Aligned_cols=104 Identities=25% Similarity=0.310 Sum_probs=94.7
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcc-cccccc---eecCCCCCcHHHHHHHHHHcCCCCCcEE
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIK-SMFVAK---EIFSSWSHKTDHFQRIHSRTGVPFNSML 78 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~-~~f~~~---~~~~~~kp~~~~~~~~~~~~~~~~~~~v 78 (147)
.++||+.++|+.|+++|++++|+||+. ...++..++.+|+. .||+.+ +.+...||+|++|..+++++++.|++||
T Consensus 161 ~~~pG~~elL~~Lk~~G~~l~IvSn~~-~~~~~~~L~~~gl~~~~Fd~iv~~~~~~~~KP~Pe~~~~a~~~lgv~p~e~v 239 (1057)
T PLN02919 161 IGFPGALELITQCKNKGLKVAVASSAD-RIKVDANLAAAGLPLSMFDAIVSADAFENLKPAPDIFLAAAKILGVPTSECV 239 (1057)
T ss_pred ccCccHHHHHHHHHhCCCeEEEEeCCc-HHHHHHHHHHcCCChhHCCEEEECcccccCCCCHHHHHHHHHHcCcCcccEE
Confidence 479999999999999999999999887 67778899999996 788885 5666789999999999999999999999
Q ss_pred EEeCCcccHHHHHHcCCeEEEECCCCChH
Q 032106 79 FFDDEDRNIDAVSKMGVTGILVGNGVNLG 107 (147)
Q Consensus 79 ~VgDs~~Di~~a~~~Gi~~i~v~~~~~~~ 107 (147)
||||+..|+++|+++||.+|+|.++...+
T Consensus 240 ~IgDs~~Di~AA~~aGm~~I~v~~~~~~~ 268 (1057)
T PLN02919 240 VIEDALAGVQAARAAGMRCIAVTTTLSEE 268 (1057)
T ss_pred EEcCCHHHHHHHHHcCCEEEEECCCCCHH
Confidence 99999999999999999999999986543
No 49
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=99.72 E-value=7.4e-17 Score=113.49 Aligned_cols=112 Identities=21% Similarity=0.281 Sum_probs=99.3
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHHcCCCCCcEEEEe
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLFFD 81 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~Vg 81 (147)
|..-|++++.+..++..|+++.|+||++ +.-+..+.+.+|++- +....||.+..|+++++++++++++|+|||
T Consensus 45 ~~~tpe~~~W~~e~k~~gi~v~vvSNn~-e~RV~~~~~~l~v~f------i~~A~KP~~~~fr~Al~~m~l~~~~vvmVG 117 (175)
T COG2179 45 PDATPELRAWLAELKEAGIKVVVVSNNK-ESRVARAAEKLGVPF------IYRAKKPFGRAFRRALKEMNLPPEEVVMVG 117 (175)
T ss_pred CCCCHHHHHHHHHHHhcCCEEEEEeCCC-HHHHHhhhhhcCCce------eecccCccHHHHHHHHHHcCCChhHEEEEc
Confidence 6788999999999999999999999987 555578889999862 456699999999999999999999999999
Q ss_pred CCcc-cHHHHHHcCCeEEEECCCCChHHHHHHHHHHHHhh
Q 032106 82 DEDR-NIDAVSKMGVTGILVGNGVNLGALRQGLTKFSQNW 120 (147)
Q Consensus 82 Ds~~-Di~~a~~~Gi~~i~v~~~~~~~~~~~~l~~~~~~~ 120 (147)
|... |+.+++++|+.+|.|..-..++.+...+.++.|..
T Consensus 118 DqL~TDVlggnr~G~~tIlV~Pl~~~d~~~t~~nR~~Er~ 157 (175)
T COG2179 118 DQLFTDVLGGNRAGMRTILVEPLVAPDGWITKINRWRERR 157 (175)
T ss_pred chhhhhhhcccccCcEEEEEEEeccccchhhhhhHHHHHH
Confidence 9977 99999999999999987666667888888888874
No 50
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=99.71 E-value=6.5e-17 Score=113.41 Aligned_cols=88 Identities=20% Similarity=0.317 Sum_probs=78.7
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccc---eecCCCCCcHHHHHHHHHHcCCCCCcEEE
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAK---EIFSSWSHKTDHFQRIHSRTGVPFNSMLF 79 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~---~~~~~~kp~~~~~~~~~~~~~~~~~~~v~ 79 (147)
..+||+.++|+.|+++|++++|+||+. ...+...++.+ +..+|+.+ +.+. .||++++|..+++++|++| +|+|
T Consensus 64 ~~~~g~~e~l~~L~~~g~~~~i~T~~~-~~~~~~~~~~~-l~~~f~~i~~~~~~~-~Kp~~~~~~~~~~~~~~~~-~~l~ 139 (154)
T TIGR01549 64 AYIRGAADLLKRLKEAGIKLGIISNGS-LRAQKLLLRKH-LGDYFDLILGSDEFG-AKPEPEIFLAALESLGLPP-EVLH 139 (154)
T ss_pred eeccCHHHHHHHHHHCcCeEEEEeCCc-hHHHHHHHHHH-HHhcCcEEEecCCCC-CCcCHHHHHHHHHHcCCCC-CEEE
Confidence 467999999999999999999999888 67778888887 78888774 4445 8999999999999999999 9999
Q ss_pred EeCCcccHHHHHHcC
Q 032106 80 FDDEDRNIDAVSKMG 94 (147)
Q Consensus 80 VgDs~~Di~~a~~~G 94 (147)
|||+..|+.+|+++|
T Consensus 140 iGDs~~Di~aa~~aG 154 (154)
T TIGR01549 140 VGDNLNDIEGARNAG 154 (154)
T ss_pred EeCCHHHHHHHHHcc
Confidence 999999999999987
No 51
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=99.71 E-value=8.9e-17 Score=131.17 Aligned_cols=101 Identities=17% Similarity=0.254 Sum_probs=88.5
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccc---eecCCCCCcHHHHHHHHHHcCCCCCcEE
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAK---EIFSSWSHKTDHFQRIHSRTGVPFNSML 78 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~---~~~~~~kp~~~~~~~~~~~~~~~~~~~v 78 (147)
..++||+.++|+.|+++|++++|+||+. ...++..++.+|+..||+.+ +.+ ..||+|+.|..++++++ |++|+
T Consensus 329 ~~l~pG~~e~L~~Lk~~g~~l~IvS~~~-~~~~~~~l~~~~l~~~f~~i~~~d~v-~~~~kP~~~~~al~~l~--~~~~v 404 (459)
T PRK06698 329 GALYPNVKEIFTYIKENNCSIYIASNGL-TEYLRAIVSYYDLDQWVTETFSIEQI-NSLNKSDLVKSILNKYD--IKEAA 404 (459)
T ss_pred CCcCCCHHHHHHHHHHCCCeEEEEeCCc-hHHHHHHHHHCCcHhhcceeEecCCC-CCCCCcHHHHHHHHhcC--cceEE
Confidence 3689999999999999999999999888 67778999999999999985 222 24678889999998865 68999
Q ss_pred EEeCCcccHHHHHHcCCeEEEECCCCCh
Q 032106 79 FFDDEDRNIDAVSKMGVTGILVGNGVNL 106 (147)
Q Consensus 79 ~VgDs~~Di~~a~~~Gi~~i~v~~~~~~ 106 (147)
||||+.+|+.+|+++|+.++++.++...
T Consensus 405 ~VGDs~~Di~aAk~AG~~~I~v~~~~~~ 432 (459)
T PRK06698 405 VVGDRLSDINAAKDNGLIAIGCNFDFAQ 432 (459)
T ss_pred EEeCCHHHHHHHHHCCCeEEEEeCCCCc
Confidence 9999999999999999999999987643
No 52
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=99.70 E-value=7e-17 Score=115.52 Aligned_cols=96 Identities=19% Similarity=0.297 Sum_probs=79.4
Q ss_pred CchhHHHHHHHHHHCCCeEEEEcCCCCh-----------HHHHHHHHhcCcccccccc--eecCCCCCcHHHHHHHHHHc
Q 032106 4 LYPHAKGILHALKDKGIDVAVASRSPSP-----------DIANTFLEKLNIKSMFVAK--EIFSSWSHKTDHFQRIHSRT 70 (147)
Q Consensus 4 ~~pgv~~~L~~L~~~g~~l~i~S~~~~~-----------~~~~~~l~~~gl~~~f~~~--~~~~~~kp~~~~~~~~~~~~ 70 (147)
+|||+.++|+.|+++|++++|+||+... ..++.+++.+|+.. +..+ +.....||++.+|..+++++
T Consensus 43 ~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl~~-~~ii~~~~~~~~KP~p~~~~~~~~~~ 121 (166)
T TIGR01664 43 LYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKVPI-QVLAATHAGLYRKPMTGMWEYLQSQY 121 (166)
T ss_pred ecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcCCCE-EEEEecCCCCCCCCccHHHHHHHHHc
Confidence 6899999999999999999999987632 13567889999853 2221 22234799999999999999
Q ss_pred C--CCCCcEEEEeCCc--------ccHHHHHHcCCeEEEE
Q 032106 71 G--VPFNSMLFFDDED--------RNIDAVSKMGVTGILV 100 (147)
Q Consensus 71 ~--~~~~~~v~VgDs~--------~Di~~a~~~Gi~~i~v 100 (147)
| +++++++||||+. .|+++|+++|+.+++-
T Consensus 122 ~~~~~~~~~v~VGD~~~~~~~~~~~Di~aA~~aGi~~~~~ 161 (166)
T TIGR01664 122 NSPIKMTRSFYVGDAAGRKLDFSDADIKFAKNLGLEFKYP 161 (166)
T ss_pred CCCCCchhcEEEECCCCCCCCCchhHHHHHHHCCCCcCCh
Confidence 9 9999999999996 5999999999998753
No 53
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=99.70 E-value=1e-16 Score=116.97 Aligned_cols=88 Identities=19% Similarity=0.202 Sum_probs=78.3
Q ss_pred CchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccc---eecCCCCCcHHHHHHHHHHcCCCCCcEEEE
Q 032106 4 LYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAK---EIFSSWSHKTDHFQRIHSRTGVPFNSMLFF 80 (147)
Q Consensus 4 ~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~---~~~~~~kp~~~~~~~~~~~~~~~~~~~v~V 80 (147)
+.+++.++|+.|++.|++++|+||+. ...++.+++.+|+..||+.+ +.... ||+|..|..+++++|+++++|+||
T Consensus 107 ~~~~~~~~L~~l~~~g~~~~i~T~~~-~~~~~~~l~~~gl~~~f~~~~~~~~~~~-KP~p~~~~~~~~~~~~~~~~~i~v 184 (197)
T TIGR01548 107 TLLTPKGLLRELHRAPKGMAVVTGRP-RKDAAKFLTTHGLEILFPVQIWMEDCPP-KPNPEPLILAAKALGVEACHAAMV 184 (197)
T ss_pred cccCHHHHHHHHHHcCCcEEEECCCC-HHHHHHHHHHcCchhhCCEEEeecCCCC-CcCHHHHHHHHHHhCcCcccEEEE
Confidence 34456999999999999999999887 67778999999999999875 34444 999999999999999999999999
Q ss_pred eCCcccHHHHHHc
Q 032106 81 DDEDRNIDAVSKM 93 (147)
Q Consensus 81 gDs~~Di~~a~~~ 93 (147)
||+.+|+.+|+++
T Consensus 185 GD~~~Di~aA~~a 197 (197)
T TIGR01548 185 GDTVDDIITGRKA 197 (197)
T ss_pred eCCHHHHHHHHhC
Confidence 9999999999874
No 54
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.69 E-value=1.7e-16 Score=122.65 Aligned_cols=102 Identities=17% Similarity=0.135 Sum_probs=90.7
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCccc-cccccee----------cCCCCCcHHHHHHHHHHc
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKS-MFVAKEI----------FSSWSHKTDHFQRIHSRT 70 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~-~f~~~~~----------~~~~kp~~~~~~~~~~~~ 70 (147)
..++||+.++|+.|+++|++++++||+. ....+..++.+++.+ +|+.+.. ....||++.++..+++++
T Consensus 186 ~~~~~~~~~~l~~l~~~g~~i~i~T~r~-~~~~~~~l~~l~~~~~~f~~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~~ 264 (300)
T PHA02530 186 DKPNPMVVELVKMYKAAGYEIIVVSGRD-GVCEEDTVEWLRQTDIWFDDLIGRPPDMHFQREQGDKRPDDVVKEEIFWEK 264 (300)
T ss_pred CCCChhHHHHHHHHHhCCCEEEEEeCCC-hhhHHHHHHHHHHcCCchhhhhCCcchhhhcccCCCCCCcHHHHHHHHHHH
Confidence 4689999999999999999999999888 666788999999987 8887522 235799999999999999
Q ss_pred CC-CCCcEEEEeCCcccHHHHHHcCCeEEEECCCC
Q 032106 71 GV-PFNSMLFFDDEDRNIDAVSKMGVTGILVGNGV 104 (147)
Q Consensus 71 ~~-~~~~~v~VgDs~~Di~~a~~~Gi~~i~v~~~~ 104 (147)
+. .+++|+||||+..|+++|+++|+.+++|.||.
T Consensus 265 ~~~~~~~~~~vgD~~~d~~~a~~~Gi~~i~v~~g~ 299 (300)
T PHA02530 265 IAPKYDVLLAVDDRDQVVDMWRRIGLECWQVAPGD 299 (300)
T ss_pred hccCceEEEEEcCcHHHHHHHHHhCCeEEEecCCC
Confidence 88 67999999999999999999999999998863
No 55
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.69 E-value=1.2e-16 Score=119.41 Aligned_cols=100 Identities=19% Similarity=0.208 Sum_probs=89.6
Q ss_pred CchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccc---eecCCCCCcHHHHHHHHHHcCCCCCcEEEE
Q 032106 4 LYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAK---EIFSSWSHKTDHFQRIHSRTGVPFNSMLFF 80 (147)
Q Consensus 4 ~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~---~~~~~~kp~~~~~~~~~~~~~~~~~~~v~V 80 (147)
..+++.++|+.|++.|+.++++||.. .. .+.++..+++..|||.+ +..+..||+|.+|+.+++++++.|++|+||
T Consensus 114 ~~~~~~~~lq~lR~~g~~l~iisN~d-~r-~~~~l~~~~l~~~fD~vv~S~e~g~~KPDp~If~~al~~l~v~Pee~vhI 191 (237)
T KOG3085|consen 114 YLDGMQELLQKLRKKGTILGIISNFD-DR-LRLLLLPLGLSAYFDFVVESCEVGLEKPDPRIFQLALERLGVKPEECVHI 191 (237)
T ss_pred eccHHHHHHHHHHhCCeEEEEecCCc-HH-HHHHhhccCHHHhhhhhhhhhhhccCCCChHHHHHHHHHhCCChHHeEEe
Confidence 46788899999999999999999887 34 36889999999999996 677789999999999999999999999999
Q ss_pred eCCcc-cHHHHHHcCCeEEEECCCCC
Q 032106 81 DDEDR-NIDAVSKMGVTGILVGNGVN 105 (147)
Q Consensus 81 gDs~~-Di~~a~~~Gi~~i~v~~~~~ 105 (147)
||+.. |+++|+++||.++.|.....
T Consensus 192 gD~l~nD~~gA~~~G~~ailv~~~~~ 217 (237)
T KOG3085|consen 192 GDLLENDYEGARNLGWHAILVDNSIT 217 (237)
T ss_pred cCccccccHhHHHcCCEEEEEccccc
Confidence 99977 79999999999999986543
No 56
>PHA02597 30.2 hypothetical protein; Provisional
Probab=99.67 E-value=4.4e-16 Score=113.54 Aligned_cols=99 Identities=20% Similarity=0.284 Sum_probs=81.4
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCccccc----ccceecCCCCCcHHHHHHHHHHcCCCCCcEE
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMF----VAKEIFSSWSHKTDHFQRIHSRTGVPFNSML 78 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f----~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v 78 (147)
.++||+.++|+.|++. ++++++||++ .......++.+++..+| +.+......|||++.|..+++++| |++++
T Consensus 74 ~~~pG~~e~L~~L~~~-~~~~i~Tn~~-~~~~~~~~~~~~l~~~f~~~f~~i~~~~~~~~kp~~~~~a~~~~~--~~~~v 149 (197)
T PHA02597 74 SAYDDALDVINKLKED-YDFVAVTALG-DSIDALLNRQFNLNALFPGAFSEVLMCGHDESKEKLFIKAKEKYG--DRVVC 149 (197)
T ss_pred cCCCCHHHHHHHHHhc-CCEEEEeCCc-cchhHHHHhhCCHHHhCCCcccEEEEeccCcccHHHHHHHHHHhC--CCcEE
Confidence 5899999999999987 5688889876 34444567788887655 333333446889999999999999 89999
Q ss_pred EEeCCcccHHHHHHc--CCeEEEECCCCC
Q 032106 79 FFDDEDRNIDAVSKM--GVTGILVGNGVN 105 (147)
Q Consensus 79 ~VgDs~~Di~~a~~~--Gi~~i~v~~~~~ 105 (147)
||||+..|+.+|+++ ||.++++.++..
T Consensus 150 ~vgDs~~di~aA~~a~~Gi~~i~~~~~~~ 178 (197)
T PHA02597 150 FVDDLAHNLDAAHEALSQLPVIHMLRGER 178 (197)
T ss_pred EeCCCHHHHHHHHHHHcCCcEEEecchhh
Confidence 999999999999999 999999998864
No 57
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=99.67 E-value=1.1e-15 Score=120.75 Aligned_cols=110 Identities=18% Similarity=0.295 Sum_probs=89.0
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCC--------------ChHHHHHHHHhcCcccccccc--------eecCCCCCcH
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSP--------------SPDIANTFLEKLNIKSMFVAK--------EIFSSWSHKT 60 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~--------------~~~~~~~~l~~~gl~~~f~~~--------~~~~~~kp~~ 60 (147)
.++||+.++|..|+++|++++|+||++ ....+..+++.+++. |+.+ +.+..+||++
T Consensus 30 ~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~~gl~--fd~i~i~~~~~sd~~~~rKP~p 107 (354)
T PRK05446 30 AFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFESQGIK--FDEVLICPHFPEDNCSCRKPKT 107 (354)
T ss_pred eECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHHHcCCc--eeeEEEeCCcCcccCCCCCCCH
Confidence 579999999999999999999999851 023345677888874 5432 2445689999
Q ss_pred HHHHHHHHHcCCCCCcEEEEeCCcccHHHHHHcCCeEEEECC-CCChHHHHHHHH
Q 032106 61 DHFQRIHSRTGVPFNSMLFFDDEDRNIDAVSKMGVTGILVGN-GVNLGALRQGLT 114 (147)
Q Consensus 61 ~~~~~~~~~~~~~~~~~v~VgDs~~Di~~a~~~Gi~~i~v~~-~~~~~~~~~~l~ 114 (147)
.++..+++++++.|++++||||+.+|+.+|+++|+.++++.. +.+++...+.+.
T Consensus 108 ~~l~~a~~~l~v~~~~svmIGDs~sDi~aAk~aGi~~I~v~~~~~~~~~i~~~l~ 162 (354)
T PRK05446 108 GLVEEYLAEGAIDLANSYVIGDRETDVQLAENMGIKGIRYARETLNWDAIAEQLT 162 (354)
T ss_pred HHHHHHHHHcCCCcccEEEEcCCHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHh
Confidence 999999999999999999999999999999999999999954 355655554433
No 58
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=99.65 E-value=1.5e-15 Score=112.28 Aligned_cols=97 Identities=20% Similarity=0.247 Sum_probs=83.4
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccc----------eec---CCCCCcHHHHHHHHH
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAK----------EIF---SSWSHKTDHFQRIHS 68 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~----------~~~---~~~kp~~~~~~~~~~ 68 (147)
..++||+.++|+.|+++|++++|+||+. ...++.+++.+|+..+|... ... ..++||+..|+.+++
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~IvS~~~-~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ 162 (219)
T TIGR00338 84 LPLTEGAEELVKTLKEKGYKVAVISGGF-DLFAEHVKDKLGLDAAFANRLEVEDGKLTGLVEGPIVDASYKGKTLLILLR 162 (219)
T ss_pred CCcCCCHHHHHHHHHHCCCEEEEECCCc-HHHHHHHHHHcCCCceEeeEEEEECCEEEEEecCcccCCcccHHHHHHHHH
Confidence 3589999999999999999999999887 77788999999998888531 111 124679999999999
Q ss_pred HcCCCCCcEEEEeCCcccHHHHHHcCCeEEE
Q 032106 69 RTGVPFNSMLFFDDEDRNIDAVSKMGVTGIL 99 (147)
Q Consensus 69 ~~~~~~~~~v~VgDs~~Di~~a~~~Gi~~i~ 99 (147)
+++++|++|+||||+.+|+.+|+++|+.+++
T Consensus 163 ~~~~~~~~~i~iGDs~~Di~aa~~ag~~i~~ 193 (219)
T TIGR00338 163 KEGISPENTVAVGDGANDLSMIKAAGLGIAF 193 (219)
T ss_pred HcCCCHHHEEEEECCHHHHHHHHhCCCeEEe
Confidence 9999999999999999999999999998643
No 59
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=99.64 E-value=8.9e-16 Score=105.37 Aligned_cols=88 Identities=24% Similarity=0.368 Sum_probs=77.1
Q ss_pred CchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcC-------cccccccceecCCCCCcHHHHHHHHHHcC--CCC
Q 032106 4 LYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLN-------IKSMFVAKEIFSSWSHKTDHFQRIHSRTG--VPF 74 (147)
Q Consensus 4 ~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~g-------l~~~f~~~~~~~~~kp~~~~~~~~~~~~~--~~~ 74 (147)
++||+.++|+.|+++|++++|+||++.+..+...++.++ +..+|+.+. .+..+|++..|..+++++| +.|
T Consensus 30 ~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~~~~~i~~l~~~f~~~~-~~~~~pkp~~~~~a~~~lg~~~~p 108 (128)
T TIGR01681 30 TIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFEDFGIIFPLAEYFDPLT-IGYWLPKSPRLVEIALKLNGVLKP 108 (128)
T ss_pred HHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhccccccchhhHhhhhhhh-hcCCCcHHHHHHHHHHHhcCCCCc
Confidence 799999999999999999999999844777788889888 788888742 2235799999999999999 999
Q ss_pred CcEEEEeCCcccHHHHHH
Q 032106 75 NSMLFFDDEDRNIDAVSK 92 (147)
Q Consensus 75 ~~~v~VgDs~~Di~~a~~ 92 (147)
++|+||||+..|+++.++
T Consensus 109 ~~~l~igDs~~n~~~~~~ 126 (128)
T TIGR01681 109 KSILFVDDRPDNNEEVDY 126 (128)
T ss_pred ceEEEECCCHhHHHHHHh
Confidence 999999999999988765
No 60
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=99.63 E-value=3.5e-16 Score=111.86 Aligned_cols=83 Identities=13% Similarity=0.262 Sum_probs=74.9
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccc---eecCCCCCcHHHHHHHHHHcCCCCCcEEE
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAK---EIFSSWSHKTDHFQRIHSRTGVPFNSMLF 79 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~---~~~~~~kp~~~~~~~~~~~~~~~~~~~v~ 79 (147)
.++||+.++|+ +++|+||++ ...++..++++|+..+|+.+ +.++..||+|+.|..+++++|++|++|+|
T Consensus 90 ~~~~g~~~~L~-------~~~i~Tn~~-~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~f~~~~~~~~~~p~~~l~ 161 (175)
T TIGR01493 90 PPWPDSAAALA-------RVAILSNAS-HWAFDQFAQQAGLPWYFDRAFSVDTVRAYKPDPVVYELVFDTVGLPPDRVLM 161 (175)
T ss_pred CCCCchHHHHH-------HHhhhhCCC-HHHHHHHHHHCCCHHHHhhhccHhhcCCCCCCHHHHHHHHHHHCCCHHHeEe
Confidence 48999999998 379999988 77778899999999999875 56677999999999999999999999999
Q ss_pred EeCCcccHHHHHHc
Q 032106 80 FDDEDRNIDAVSKM 93 (147)
Q Consensus 80 VgDs~~Di~~a~~~ 93 (147)
|||+.+|+.+|+++
T Consensus 162 vgD~~~Di~~A~~~ 175 (175)
T TIGR01493 162 VAAHQWDLIGARKF 175 (175)
T ss_pred EecChhhHHHHhcC
Confidence 99999999999874
No 61
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=99.61 E-value=6.3e-15 Score=99.54 Aligned_cols=97 Identities=26% Similarity=0.368 Sum_probs=84.7
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccc---eecCCC----------------CCcHHHH
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAK---EIFSSW----------------SHKTDHF 63 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~---~~~~~~----------------kp~~~~~ 63 (147)
.++|++.++|+.|+++|++++|+||+. ...++..++.+++..+|+.+ ...... ||++..+
T Consensus 24 ~~~~~~~~~l~~l~~~g~~i~ivS~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (139)
T cd01427 24 ELYPGVKEALKELKEKGIKLALATNKS-RREVLELLEELGLDDYFDPVITSNGAAIYYPKEGLFLGGGPFDIGKPNPDKL 102 (139)
T ss_pred CcCcCHHHHHHHHHHCCCeEEEEeCch-HHHHHHHHHHcCCchhhhheeccchhhhhcccccccccccccccCCCCHHHH
Confidence 789999999999999999999999888 77788999999987666653 111112 8999999
Q ss_pred HHHHHHcCCCCCcEEEEeCCcccHHHHHHcCCeEEEE
Q 032106 64 QRIHSRTGVPFNSMLFFDDEDRNIDAVSKMGVTGILV 100 (147)
Q Consensus 64 ~~~~~~~~~~~~~~v~VgDs~~Di~~a~~~Gi~~i~v 100 (147)
..++++++..+++++||||+.+|+.+++++|+.+++|
T Consensus 103 ~~~~~~~~~~~~~~~~igD~~~d~~~~~~~g~~~i~v 139 (139)
T cd01427 103 LAALKLLGVDPEEVLMVGDSLNDIEMAKAAGGLGVAV 139 (139)
T ss_pred HHHHHHcCCChhhEEEeCCCHHHHHHHHHcCCceeeC
Confidence 9999999999999999999999999999999998875
No 62
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=99.61 E-value=5.2e-15 Score=107.58 Aligned_cols=101 Identities=19% Similarity=0.232 Sum_probs=84.0
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccce---ecCC----------CCCcHHHHHHHHHH
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAKE---IFSS----------WSHKTDHFQRIHSR 69 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~---~~~~----------~kp~~~~~~~~~~~ 69 (147)
.++||+.++|+.|+++|++++|+||+. ...++.+++.+|+..+|...- ..+. .+++...+..++++
T Consensus 80 ~~~~g~~e~l~~l~~~g~~~~IvS~~~-~~~~~~~l~~~g~~~~~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~~~~~~ 158 (201)
T TIGR01491 80 SLRDYAEELVRWLKEKGLKTAIVSGGI-MCLAKKVAEKLNPDYVYSNELVFDEKGFIQPDGIVRVTFDNKGEAVERLKRE 158 (201)
T ss_pred CCCccHHHHHHHHHHCCCEEEEEeCCc-HHHHHHHHHHhCCCeEEEEEEEEcCCCeEecceeeEEccccHHHHHHHHHHH
Confidence 579999999999999999999999887 777899999999988775421 1111 23555789999999
Q ss_pred cCCCCCcEEEEeCCcccHHHHHHcCCeEEEECCCC
Q 032106 70 TGVPFNSMLFFDDEDRNIDAVSKMGVTGILVGNGV 104 (147)
Q Consensus 70 ~~~~~~~~v~VgDs~~Di~~a~~~Gi~~i~v~~~~ 104 (147)
+++++++++||||+.+|+.+|+.+|+.++..+.+.
T Consensus 159 ~~~~~~~~i~iGDs~~D~~~a~~ag~~~a~~~~~~ 193 (201)
T TIGR01491 159 LNPSLTETVAVGDSKNDLPMFEVADISISLGDEGH 193 (201)
T ss_pred hCCCHHHEEEEcCCHhHHHHHHhcCCeEEECCCcc
Confidence 99999999999999999999999999877665543
No 63
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=99.59 E-value=1.3e-14 Score=109.14 Aligned_cols=97 Identities=13% Similarity=0.222 Sum_probs=78.6
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCC---ChHHHHHHHHhcCcccccccc---eecCCCCCcHHHHHHHHHHcCCCCCc
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSP---SPDIANTFLEKLNIKSMFVAK---EIFSSWSHKTDHFQRIHSRTGVPFNS 76 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~---~~~~~~~~l~~~gl~~~f~~~---~~~~~~kp~~~~~~~~~~~~~~~~~~ 76 (147)
.+++++.++|+.|+++|++++++||+. ....++.+++.+|+..+|+.+ +.....||.+. .+++++++
T Consensus 114 ~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~~f~~i~~~d~~~~~Kp~~~---~~l~~~~i---- 186 (237)
T TIGR01672 114 IPKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIPAMNPVIFAGDKPGQYQYTKT---QWIQDKNI---- 186 (237)
T ss_pred cchhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCchheeEEECCCCCCCCCCCHH---HHHHhCCC----
Confidence 456779999999999999999999872 145678889999999999874 23333566654 35567776
Q ss_pred EEEEeCCcccHHHHHHcCCeEEEECCCCCh
Q 032106 77 MLFFDDEDRNIDAVSKMGVTGILVGNGVNL 106 (147)
Q Consensus 77 ~v~VgDs~~Di~~a~~~Gi~~i~v~~~~~~ 106 (147)
++||||+.+|+.+|+++|+.++.|.|+++.
T Consensus 187 ~i~vGDs~~DI~aAk~AGi~~I~V~~g~~s 216 (237)
T TIGR01672 187 RIHYGDSDNDITAAKEAGARGIRILRASNS 216 (237)
T ss_pred eEEEeCCHHHHHHHHHCCCCEEEEEecCCC
Confidence 799999999999999999999999988753
No 64
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=99.57 E-value=1.4e-14 Score=102.43 Aligned_cols=86 Identities=16% Similarity=0.288 Sum_probs=77.5
Q ss_pred HHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHHcCCCCCcEEEEeCCcccHHHH
Q 032106 11 ILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLFFDDEDRNIDAV 90 (147)
Q Consensus 11 ~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgDs~~Di~~a 90 (147)
+|+.|+++|++++|+||.+ ...+...++.+|+..+|+. .+|++..+..+++++++.+++|+||||+.+|+.++
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~-~~~~~~~l~~~gi~~~~~~------~~~k~~~~~~~~~~~~~~~~~~~~vGDs~~D~~~~ 108 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRK-AKLVEDRCKTLGITHLYQG------QSNKLIAFSDILEKLALAPENVAYIGDDLIDWPVM 108 (154)
T ss_pred HHHHHHHCCCEEEEEECCC-CHHHHHHHHHcCCCEEEec------ccchHHHHHHHHHHcCCCHHHEEEECCCHHHHHHH
Confidence 7999999999999999888 5667889999999988874 37899999999999999999999999999999999
Q ss_pred HHcCCeEEEECCCC
Q 032106 91 SKMGVTGILVGNGV 104 (147)
Q Consensus 91 ~~~Gi~~i~v~~~~ 104 (147)
+.+|+. +++....
T Consensus 109 ~~ag~~-~~v~~~~ 121 (154)
T TIGR01670 109 EKVGLS-VAVADAH 121 (154)
T ss_pred HHCCCe-EecCCcC
Confidence 999997 6766554
No 65
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=99.56 E-value=2.7e-14 Score=111.79 Aligned_cols=91 Identities=23% Similarity=0.334 Sum_probs=82.5
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHh----cCcccccccceecCCCCCcHHHHHHHHHHcCCCCCcEE
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEK----LNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSML 78 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~----~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v 78 (147)
.+|||+.++|+.|+++|++++|+|+++ ...+..+++. +++.++|+.+ ...+||++..+..+++++|+.+++++
T Consensus 31 ~~~~~~~e~L~~L~~~Gi~lai~S~n~-~~~a~~~l~~~~~~~~~~~~f~~~--~~~~~pk~~~i~~~~~~l~i~~~~~v 107 (320)
T TIGR01686 31 PLHKTLQEKIKTLKKQGFLLALASKND-EDDAKKVFERRKDFILQAEDFDAR--SINWGPKSESLRKIAKKLNLGTDSFL 107 (320)
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEcCCC-HHHHHHHHHhCccccCcHHHeeEE--EEecCchHHHHHHHHHHhCCCcCcEE
Confidence 468999999999999999999999887 6777889999 8999999874 33478999999999999999999999
Q ss_pred EEeCCcccHHHHHHcCCe
Q 032106 79 FFDDEDRNIDAVSKMGVT 96 (147)
Q Consensus 79 ~VgDs~~Di~~a~~~Gi~ 96 (147)
||||++.|+.++++++..
T Consensus 108 fidD~~~d~~~~~~~lp~ 125 (320)
T TIGR01686 108 FIDDNPAERANVKITLPV 125 (320)
T ss_pred EECCCHHHHHHHHHHCCC
Confidence 999999999999997764
No 66
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=99.56 E-value=2.9e-14 Score=104.44 Aligned_cols=116 Identities=22% Similarity=0.353 Sum_probs=96.1
Q ss_pred CchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccceecC---------CCCCcHHHHHHHHHHcCCC-
Q 032106 4 LYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFS---------SWSHKTDHFQRIHSRTGVP- 73 (147)
Q Consensus 4 ~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~~~~---------~~kp~~~~~~~~~~~~~~~- 73 (147)
+-+-.+.+|-.|+.++ .++.||++ +..+.++++.+||.++|+.+-.+. .+||.+.+|+.+.+..|+.
T Consensus 101 PD~~LRnlLL~l~~r~--k~~FTNa~-k~HA~r~Lk~LGieDcFegii~~e~~np~~~~~vcKP~~~afE~a~k~agi~~ 177 (244)
T KOG3109|consen 101 PDPVLRNLLLSLKKRR--KWIFTNAY-KVHAIRILKKLGIEDCFEGIICFETLNPIEKTVVCKPSEEAFEKAMKVAGIDS 177 (244)
T ss_pred CCHHHHHHHHhCcccc--EEEecCCc-HHHHHHHHHHhChHHhccceeEeeccCCCCCceeecCCHHHHHHHHHHhCCCC
Confidence 3455678888888775 79999999 777789999999999999972222 2899999999999999998
Q ss_pred CCcEEEEeCCcccHHHHHHcCCeEEEECCCCChHHHHHHHHHHHHhhcc
Q 032106 74 FNSMLFFDDEDRNIDAVSKMGVTGILVGNGVNLGALRQGLTKFSQNWNT 122 (147)
Q Consensus 74 ~~~~v~VgDs~~Di~~a~~~Gi~~i~v~~~~~~~~~~~~l~~~~~~~~~ 122 (147)
|.+++||+||.++|++|++.|+.+++++..........++....+...+
T Consensus 178 p~~t~FfDDS~~NI~~ak~vGl~tvlv~~~~~~~~~d~~l~~ih~~k~a 226 (244)
T KOG3109|consen 178 PRNTYFFDDSERNIQTAKEVGLKTVLVGREHKIKGVDYALEQIHNNKEA 226 (244)
T ss_pred cCceEEEcCchhhHHHHHhccceeEEEEeeecccchHHHHHHhhchhhh
Confidence 9999999999999999999999999999877655566666665555443
No 67
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=99.56 E-value=6.5e-15 Score=113.14 Aligned_cols=103 Identities=17% Similarity=0.113 Sum_probs=81.7
Q ss_pred CchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccc------eecCCCCCcHHHHHHHHHHcCCCCCcE
Q 032106 4 LYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAK------EIFSSWSHKTDHFQRIHSRTGVPFNSM 77 (147)
Q Consensus 4 ~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~------~~~~~~kp~~~~~~~~~~~~~~~~~~~ 77 (147)
-|+++.++|+.|+++|+ ++|+||.+........+...++..+|..+ +.....||++.+|..+++++|+.|+++
T Consensus 144 ~y~~i~~~l~~L~~~g~-~~i~Tn~d~~~~~~~~~~~~~~g~~~~~i~~~~g~~~~~~gKP~p~~~~~~~~~~~~~~~~~ 222 (279)
T TIGR01452 144 SYAKLREACAHLREPGC-LFVATNRDPWHPLSDGSRTPGTGSLVAAIETASGRQPLVVGKPSPYMFECITENFSIDPART 222 (279)
T ss_pred CHHHHHHHHHHHhcCCC-EEEEeCCCCCCCCcCCCcccChHHHHHHHHHHhCCceeccCCCCHHHHHHHHHHhCCChhhE
Confidence 48999999999998887 89999877322211223345665666553 223347999999999999999999999
Q ss_pred EEEeCCc-ccHHHHHHcCCeEEEECCCCChH
Q 032106 78 LFFDDED-RNIDAVSKMGVTGILVGNGVNLG 107 (147)
Q Consensus 78 v~VgDs~-~Di~~a~~~Gi~~i~v~~~~~~~ 107 (147)
+||||+. .||.+|+++|+.+++|.+|....
T Consensus 223 lmIGD~~~tDI~~A~~aGi~si~V~~G~~~~ 253 (279)
T TIGR01452 223 LMVGDRLETDILFGHRCGMTTVLVLSGVSRL 253 (279)
T ss_pred EEECCChHHHHHHHHHcCCcEEEECCCCCCH
Confidence 9999995 89999999999999999997653
No 68
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=99.56 E-value=2e-14 Score=103.10 Aligned_cols=84 Identities=17% Similarity=0.241 Sum_probs=76.2
Q ss_pred HHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHHcCCCCCcEEEEeCCcccHHH
Q 032106 10 GILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLFFDDEDRNIDA 89 (147)
Q Consensus 10 ~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgDs~~Di~~ 89 (147)
..++.|+++|++++|+||+. ...++..++.+|+..+|+. .||+|..|..+++++++.+++++||||+.+|+.+
T Consensus 41 ~~~~~L~~~Gi~laIiT~k~-~~~~~~~l~~lgi~~~f~~------~kpkp~~~~~~~~~l~~~~~ev~~iGD~~nDi~~ 113 (169)
T TIGR02726 41 MGVIVLQLCGIDVAIITSKK-SGAVRHRAEELKIKRFHEG------IKKKTEPYAQMLEEMNISDAEVCYVGDDLVDLSM 113 (169)
T ss_pred HHHHHHHHCCCEEEEEECCC-cHHHHHHHHHCCCcEEEec------CCCCHHHHHHHHHHcCcCHHHEEEECCCHHHHHH
Confidence 35789999999999999888 6777899999999988875 3799999999999999999999999999999999
Q ss_pred HHHcCCeEEEE
Q 032106 90 VSKMGVTGILV 100 (147)
Q Consensus 90 a~~~Gi~~i~v 100 (147)
++.+|+..+.-
T Consensus 114 ~~~ag~~~am~ 124 (169)
T TIGR02726 114 MKRVGLAVAVG 124 (169)
T ss_pred HHHCCCeEECc
Confidence 99999987655
No 69
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.55 E-value=5.7e-15 Score=103.66 Aligned_cols=91 Identities=13% Similarity=0.069 Sum_probs=78.1
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccc-cccc---eecCCCCCcHHHHHHHHHHcCCCCCcEE
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSM-FVAK---EIFSSWSHKTDHFQRIHSRTGVPFNSML 78 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~-f~~~---~~~~~~kp~~~~~~~~~~~~~~~~~~~v 78 (147)
.++||+.++|+.|+ .+++++|+|++. ...++.+++++++..+ |+.+ +.+...||+ |..+++++|++|++|+
T Consensus 45 ~l~pG~~e~L~~L~-~~~~l~I~Ts~~-~~~~~~il~~l~~~~~~f~~i~~~~d~~~~KP~---~~k~l~~l~~~p~~~i 119 (148)
T smart00577 45 KKRPGVDEFLKRAS-ELFELVVFTAGL-RMYADPVLDLLDPKKYFGYRRLFRDECVFVKGK---YVKDLSLLGRDLSNVI 119 (148)
T ss_pred EECCCHHHHHHHHH-hccEEEEEeCCc-HHHHHHHHHHhCcCCCEeeeEEECccccccCCe---EeecHHHcCCChhcEE
Confidence 46899999999998 569999999888 7778899999998654 4654 555567776 9999999999999999
Q ss_pred EEeCCcccHHHHHHcCCeEE
Q 032106 79 FFDDEDRNIDAVSKMGVTGI 98 (147)
Q Consensus 79 ~VgDs~~Di~~a~~~Gi~~i 98 (147)
||||+..|+.+++++|+.+-
T Consensus 120 ~i~Ds~~~~~aa~~ngI~i~ 139 (148)
T smart00577 120 IIDDSPDSWPFHPENLIPIK 139 (148)
T ss_pred EEECCHHHhhcCccCEEEec
Confidence 99999999999999988753
No 70
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=99.51 E-value=1.3e-13 Score=108.04 Aligned_cols=96 Identities=18% Similarity=0.262 Sum_probs=82.8
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccc----------e---ecCCCCCcHHHHHHHHHH
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAK----------E---IFSSWSHKTDHFQRIHSR 69 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~----------~---~~~~~kp~~~~~~~~~~~ 69 (147)
.++||+.++|+.|++.|++++|+|++. ...++.+++++|+...|... . .+...+||++.++.++++
T Consensus 181 ~l~pGa~elL~~Lk~~G~~~aIvSgg~-~~~~~~l~~~Lgld~~~an~lei~dg~ltg~v~g~iv~~k~K~~~L~~la~~ 259 (322)
T PRK11133 181 PLMPGLTELVLKLQALGWKVAIASGGF-TYFADYLRDKLRLDAAVANELEIMDGKLTGNVLGDIVDAQYKADTLTRLAQE 259 (322)
T ss_pred CCChhHHHHHHHHHHcCCEEEEEECCc-chhHHHHHHHcCCCeEEEeEEEEECCEEEeEecCccCCcccHHHHHHHHHHH
Confidence 589999999999999999999999887 56678889999987654310 1 112368999999999999
Q ss_pred cCCCCCcEEEEeCCcccHHHHHHcCCeEEE
Q 032106 70 TGVPFNSMLFFDDEDRNIDAVSKMGVTGIL 99 (147)
Q Consensus 70 ~~~~~~~~v~VgDs~~Di~~a~~~Gi~~i~ 99 (147)
+|+++++|++|||+.+|+.+++.+|+.+++
T Consensus 260 lgi~~~qtIaVGDg~NDl~m~~~AGlgiA~ 289 (322)
T PRK11133 260 YEIPLAQTVAIGDGANDLPMIKAAGLGIAY 289 (322)
T ss_pred cCCChhhEEEEECCHHHHHHHHHCCCeEEe
Confidence 999999999999999999999999998876
No 71
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=99.51 E-value=2e-14 Score=109.32 Aligned_cols=101 Identities=16% Similarity=0.136 Sum_probs=84.2
Q ss_pred CchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCccccccccee------cCCCCCcHHHHHHHHHHcCCCCCcE
Q 032106 4 LYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAKEI------FSSWSHKTDHFQRIHSRTGVPFNSM 77 (147)
Q Consensus 4 ~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~~------~~~~kp~~~~~~~~~~~~~~~~~~~ 77 (147)
.|+++.++++.|++.+++++|+||.. .......+..+|+..+|+.+.. ....||++.+|..++++++++|+++
T Consensus 121 ~y~~l~~a~~~L~~~~~~~~iatn~~-~~~~~~~~~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~ 199 (257)
T TIGR01458 121 SYQILNQAFRLLLDGAKPLLIAIGKG-RYYKRKDGLALDVGPFVTALEYATDTKATVVGKPSKTFFLEALRATGCEPEEA 199 (257)
T ss_pred CHHHHHHHHHHHHcCCCCEEEEeCCC-CCCcCCCCCCCCchHHHHHHHHHhCCCceeecCCCHHHHHHHHHHhCCChhhE
Confidence 47899999999999999999999877 3433445566788788875421 1126999999999999999999999
Q ss_pred EEEeCCc-ccHHHHHHcCCeEEEECCCCC
Q 032106 78 LFFDDED-RNIDAVSKMGVTGILVGNGVN 105 (147)
Q Consensus 78 v~VgDs~-~Di~~a~~~Gi~~i~v~~~~~ 105 (147)
+||||+. +|+.+|+++|+.+++|.+|..
T Consensus 200 ~~vGD~~~~Di~~a~~~G~~~i~v~~G~~ 228 (257)
T TIGR01458 200 VMIGDDCRDDVGGAQDCGMRGIQVRTGKY 228 (257)
T ss_pred EEECCCcHHHHHHHHHcCCeEEEECCCCC
Confidence 9999996 799999999999999998853
No 72
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=99.50 E-value=2.6e-13 Score=102.09 Aligned_cols=98 Identities=14% Similarity=0.208 Sum_probs=77.0
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCC---ChHHHHHHHHhcCc--ccccccceecC-CCCCcHHHHHHHHHHcCCCCC
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVASRSP---SPDIANTFLEKLNI--KSMFVAKEIFS-SWSHKTDHFQRIHSRTGVPFN 75 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S~~~---~~~~~~~~l~~~gl--~~~f~~~~~~~-~~kp~~~~~~~~~~~~~~~~~ 75 (147)
..++||+.++|+.|+++|++++++||+. ....++.+++.+|+ .++|+.+-... ..|+.+.. .++++++
T Consensus 113 a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~f~vil~gd~~~K~~K~~---~l~~~~i--- 186 (237)
T PRK11009 113 SIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDFHIPADNMNPVIFAGDKPGQYTKTQ---WLKKKNI--- 186 (237)
T ss_pred CcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHcCCCcccceeEEEcCCCCCCCCHHH---HHHhcCC---
Confidence 3688999999999999999999999853 24466777888999 78887631111 13565543 5556676
Q ss_pred cEEEEeCCcccHHHHHHcCCeEEEECCCCCh
Q 032106 76 SMLFFDDEDRNIDAVSKMGVTGILVGNGVNL 106 (147)
Q Consensus 76 ~~v~VgDs~~Di~~a~~~Gi~~i~v~~~~~~ 106 (147)
++||||+..|+.+|+++|+.+|.|.|+++.
T Consensus 187 -~I~IGDs~~Di~aA~~AGi~~I~v~~G~~~ 216 (237)
T PRK11009 187 -RIFYGDSDNDITAAREAGARGIRILRAANS 216 (237)
T ss_pred -eEEEcCCHHHHHHHHHcCCcEEEEecCCCC
Confidence 899999999999999999999999998764
No 73
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=99.50 E-value=1.3e-13 Score=102.44 Aligned_cols=100 Identities=24% Similarity=0.324 Sum_probs=86.1
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcC-cccccccc-----eecCCCCCcHHHHHHHHHHcCCCC-
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLN-IKSMFVAK-----EIFSSWSHKTDHFQRIHSRTGVPF- 74 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~g-l~~~f~~~-----~~~~~~kp~~~~~~~~~~~~~~~~- 74 (147)
..++||+..++++|+.+|++++++|+++ +.......+.++ +...|+.+ ..+...||+|+.|..+++.+|..|
T Consensus 91 ~~~~PGa~kLv~~L~~~gip~alat~s~-~~~~~~k~~~~~~~~~~f~~~v~~d~~~v~~gKP~Pdi~l~A~~~l~~~~~ 169 (222)
T KOG2914|consen 91 SILMPGAEKLVNHLKNNGIPVALATSST-SASFELKISRHEDIFKNFSHVVLGDDPEVKNGKPDPDIYLKAAKRLGVPPP 169 (222)
T ss_pred cccCCcHHHHHHHHHhCCCCeeEEecCC-cccHHHHHHHhhHHHHhcCCCeecCCccccCCCCCchHHHHHHHhcCCCCc
Confidence 4688999999999999999999999887 444466666665 55556553 345568999999999999999999
Q ss_pred CcEEEEeCCcccHHHHHHcCCeEEEECC
Q 032106 75 NSMLFFDDEDRNIDAVSKMGVTGILVGN 102 (147)
Q Consensus 75 ~~~v~VgDs~~Di~~a~~~Gi~~i~v~~ 102 (147)
+.|++++|++.++++|+++|+.+|++..
T Consensus 170 ~k~lVfeds~~Gv~aa~aagm~vi~v~~ 197 (222)
T KOG2914|consen 170 SKCLVFEDSPVGVQAAKAAGMQVVGVAT 197 (222)
T ss_pred cceEEECCCHHHHHHHHhcCCeEEEecC
Confidence 9999999999999999999999999987
No 74
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=99.50 E-value=1.5e-13 Score=100.47 Aligned_cols=87 Identities=25% Similarity=0.340 Sum_probs=76.8
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCccc--ccccceecCCCCCcHHHHHHHHHHcCCCCCcEEEE
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKS--MFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLFF 80 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~--~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~V 80 (147)
.++|++.++|+.|++.|++++++|+.+ ...+..+.+.+|+.+ +|.. .. .||.+.+|..+++.+++.+.+++||
T Consensus 127 ~~~~~~~~~l~~L~~~Gi~~~i~TGD~-~~~a~~~~~~lgi~~~~v~a~--~~--~kP~~k~~~~~i~~l~~~~~~v~~v 201 (215)
T PF00702_consen 127 PLRPGAKEALQELKEAGIKVAILTGDN-ESTASAIAKQLGIFDSIVFAR--VI--GKPEPKIFLRIIKELQVKPGEVAMV 201 (215)
T ss_dssp EBHTTHHHHHHHHHHTTEEEEEEESSE-HHHHHHHHHHTTSCSEEEEES--HE--TTTHHHHHHHHHHHHTCTGGGEEEE
T ss_pred cchhhhhhhhhhhhccCcceeeeeccc-ccccccccccccccccccccc--cc--ccccchhHHHHHHHHhcCCCEEEEE
Confidence 478999999999999999999999655 888899999999965 3332 11 5899999999999999999999999
Q ss_pred eCCcccHHHHHHcC
Q 032106 81 DDEDRNIDAVSKMG 94 (147)
Q Consensus 81 gDs~~Di~~a~~~G 94 (147)
||+.+|+.+++++|
T Consensus 202 GDg~nD~~al~~Ag 215 (215)
T PF00702_consen 202 GDGVNDAPALKAAG 215 (215)
T ss_dssp ESSGGHHHHHHHSS
T ss_pred ccCHHHHHHHHhCc
Confidence 99999999999987
No 75
>PLN02954 phosphoserine phosphatase
Probab=99.50 E-value=4.1e-13 Score=99.49 Aligned_cols=97 Identities=21% Similarity=0.322 Sum_probs=78.9
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcc--cccccc----e---e--------cCCCCCcHHHHH
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIK--SMFVAK----E---I--------FSSWSHKTDHFQ 64 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~--~~f~~~----~---~--------~~~~kp~~~~~~ 64 (147)
+.++||+.++|+.|+++|++++|+|++. ...++.+++.+|+. .+|... + . ....++|+..+.
T Consensus 83 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~-~~~i~~~l~~~gi~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~i~ 161 (224)
T PLN02954 83 PRLSPGIPELVKKLRARGTDVYLVSGGF-RQMIAPVAAILGIPPENIFANQILFGDSGEYAGFDENEPTSRSGGKAEAVQ 161 (224)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEECCCc-HHHHHHHHHHhCCChhhEEEeEEEEcCCCcEECccCCCcccCCccHHHHHH
Confidence 4689999999999999999999999888 67778999999997 355320 0 0 112467899999
Q ss_pred HHHHHcCCCCCcEEEEeCCcccHHHHHHcCCeEEEEC
Q 032106 65 RIHSRTGVPFNSMLFFDDEDRNIDAVSKMGVTGILVG 101 (147)
Q Consensus 65 ~~~~~~~~~~~~~v~VgDs~~Di~~a~~~Gi~~i~v~ 101 (147)
.++++++. ++++||||+.+|+.+|+++|+.++...
T Consensus 162 ~~~~~~~~--~~~i~iGDs~~Di~aa~~~~~~~~~~~ 196 (224)
T PLN02954 162 HIKKKHGY--KTMVMIGDGATDLEARKPGGADLFIGY 196 (224)
T ss_pred HHHHHcCC--CceEEEeCCHHHHHhhhcCCCCEEEec
Confidence 99998885 689999999999999988888766543
No 76
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=99.47 E-value=3e-13 Score=97.21 Aligned_cols=91 Identities=16% Similarity=0.243 Sum_probs=75.7
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccce-----------------------ecCCCCCc
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAKE-----------------------IFSSWSHK 59 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~-----------------------~~~~~kp~ 59 (147)
.++||+.++|+.|+++|++++|+||+. ...++.+++.+++..+|+.+. ......+|
T Consensus 72 ~l~~g~~~ll~~l~~~g~~~~i~S~~~-~~~~~~~l~~~~l~~~f~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~K 150 (188)
T TIGR01489 72 PIDPGFKEFIAFIKEHGIDFIVISDGN-DFFIDPVLEGIGEKDVFIEIYSNPASFDNDGRHIVWPHHCHGCCSCPCGCCK 150 (188)
T ss_pred CCCccHHHHHHHHHHcCCcEEEEeCCc-HHHHHHHHHHcCChhheeEEeccCceECCCCcEEEecCCCCccCcCCCCCCH
Confidence 578999999999999999999999887 677788999999999987641 11123467
Q ss_pred HHHHHHHHHHcCCCCCcEEEEeCCcccHHHHHHcCCeE
Q 032106 60 TDHFQRIHSRTGVPFNSMLFFDDEDRNIDAVSKMGVTG 97 (147)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~v~VgDs~~Di~~a~~~Gi~~ 97 (147)
+..++.++.++ +.+++||||+.+|+++|+++++.+
T Consensus 151 ~~~~~~~~~~~---~~~~i~iGD~~~D~~aa~~~d~~~ 185 (188)
T TIGR01489 151 GKVIHKLSEPK---YQHIIYIGDGVTDVCPAKLSDVVF 185 (188)
T ss_pred HHHHHHHHhhc---CceEEEECCCcchhchHhcCCccc
Confidence 88888887765 799999999999999999987653
No 77
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=99.47 E-value=3.1e-13 Score=98.03 Aligned_cols=84 Identities=17% Similarity=0.279 Sum_probs=74.6
Q ss_pred HHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHHcCCCCCcEEEEeCCcccHHH
Q 032106 10 GILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLFFDDEDRNIDA 89 (147)
Q Consensus 10 ~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgDs~~Di~~ 89 (147)
..|+.|+++|++++|+||.. ...++.+++.+|+..+|.. .++++..+..+++++|+.+++++||||+.+|+.+
T Consensus 55 ~~i~~L~~~Gi~v~I~T~~~-~~~v~~~l~~lgl~~~f~g------~~~k~~~l~~~~~~~gl~~~ev~~VGDs~~D~~~ 127 (183)
T PRK09484 55 YGIRCLLTSGIEVAIITGRK-SKLVEDRMTTLGITHLYQG------QSNKLIAFSDLLEKLAIAPEQVAYIGDDLIDWPV 127 (183)
T ss_pred HHHHHHHHCCCEEEEEeCCC-cHHHHHHHHHcCCceeecC------CCcHHHHHHHHHHHhCCCHHHEEEECCCHHHHHH
Confidence 47888999999999999887 5667899999999888763 4678999999999999999999999999999999
Q ss_pred HHHcCCeEEEEC
Q 032106 90 VSKMGVTGILVG 101 (147)
Q Consensus 90 a~~~Gi~~i~v~ 101 (147)
++++|+.+ .+.
T Consensus 128 a~~aG~~~-~v~ 138 (183)
T PRK09484 128 MEKVGLSV-AVA 138 (183)
T ss_pred HHHCCCeE-ecC
Confidence 99999984 454
No 78
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=99.45 E-value=6.6e-13 Score=95.73 Aligned_cols=101 Identities=15% Similarity=0.229 Sum_probs=80.3
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCC--------------hHHHHHHHHhcCcccccccc--------eecCCCCCcH
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPS--------------PDIANTFLEKLNIKSMFVAK--------EIFSSWSHKT 60 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~--------------~~~~~~~l~~~gl~~~f~~~--------~~~~~~kp~~ 60 (147)
++.||+.++|..|++.|++++|+||..- .......++..|+. |+.+ +.+.++||++
T Consensus 31 ~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~~gv~--id~i~~Cph~p~~~c~cRKP~~ 108 (181)
T COG0241 31 QFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILASQGVK--IDGILYCPHHPEDNCDCRKPKP 108 (181)
T ss_pred ccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHHHcCCc--cceEEECCCCCCCCCcccCCCh
Confidence 4789999999999999999999998321 01122344455532 3332 4467799999
Q ss_pred HHHHHHHHHcCCCCCcEEEEeCCcccHHHHHHcCCeEEEECCCCC
Q 032106 61 DHFQRIHSRTGVPFNSMLFFDDEDRNIDAVSKMGVTGILVGNGVN 105 (147)
Q Consensus 61 ~~~~~~~~~~~~~~~~~v~VgDs~~Di~~a~~~Gi~~i~v~~~~~ 105 (147)
.++..+++++++++++.+||||+..|+++|.++|+..+.+.++..
T Consensus 109 gm~~~~~~~~~iD~~~s~~VGD~~~Dlq~a~n~gi~~~~~~~~~~ 153 (181)
T COG0241 109 GMLLSALKEYNIDLSRSYVVGDRLTDLQAAENAGIKGVLVLTGIG 153 (181)
T ss_pred HHHHHHHHHhCCCccceEEecCcHHHHHHHHHCCCCceEEEcCcc
Confidence 999999999999999999999999999999999999887766543
No 79
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=99.44 E-value=5.4e-13 Score=99.00 Aligned_cols=94 Identities=11% Similarity=0.072 Sum_probs=74.1
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCccc--cc--ccc---eecCCCCCcHHH----------HH
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKS--MF--VAK---EIFSSWSHKTDH----------FQ 64 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~--~f--~~~---~~~~~~kp~~~~----------~~ 64 (147)
..++||+.++|+.|+++|++++|+||+. ...++.+++.+ +.. ++ +.. +.....||.+.. ..
T Consensus 73 ~~l~pG~~e~l~~l~~~g~~~~IvS~~~-~~~i~~il~~~-~~~~~i~~n~~~~~~~~~~~~kp~p~~~~~~~~~~~~K~ 150 (219)
T PRK09552 73 AEIREGFHEFVQFVKENNIPFYVVSGGM-DFFVYPLLQGL-IPKEQIYCNGSDFSGEYITITWPHPCDEHCQNHCGCCKP 150 (219)
T ss_pred CCcCcCHHHHHHHHHHcCCeEEEECCCc-HHHHHHHHHHh-CCcCcEEEeEEEecCCeeEEeccCCccccccccCCCchH
Confidence 3689999999999999999999999888 67778889887 643 22 111 222335565543 35
Q ss_pred HHHHHcCCCCCcEEEEeCCcccHHHHHHcCCeE
Q 032106 65 RIHSRTGVPFNSMLFFDDEDRNIDAVSKMGVTG 97 (147)
Q Consensus 65 ~~~~~~~~~~~~~v~VgDs~~Di~~a~~~Gi~~ 97 (147)
.++++++..+.+++||||+.+|+.+|+++|+.+
T Consensus 151 ~~l~~~~~~~~~~i~iGDs~~Di~aa~~Ag~~~ 183 (219)
T PRK09552 151 SLIRKLSDTNDFHIVIGDSITDLEAAKQADKVF 183 (219)
T ss_pred HHHHHhccCCCCEEEEeCCHHHHHHHHHCCcce
Confidence 788899999999999999999999999999943
No 80
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=99.42 E-value=3.2e-13 Score=101.76 Aligned_cols=95 Identities=13% Similarity=0.113 Sum_probs=78.2
Q ss_pred chhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccc-----eecCCCCCcHHHHHHHHHHcCCC-CCcEE
Q 032106 5 YPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAK-----EIFSSWSHKTDHFQRIHSRTGVP-FNSML 78 (147)
Q Consensus 5 ~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~-----~~~~~~kp~~~~~~~~~~~~~~~-~~~~v 78 (147)
||++.++|+.|.++|+++ |+||.+ .......+..++...+|..+ +.....||++.+|+.++++++.. +++++
T Consensus 140 ~~~~~~~l~~l~~~g~~~-i~tN~d-~~~~~~~~~~~~~g~~~~~i~~~g~~~~~~gKP~~~~~~~~~~~~~~~~~~~~~ 217 (242)
T TIGR01459 140 LDEFDELFAPIVARKIPN-ICANPD-RGINQHGIYRYGAGYYAELIKQLGGKVIYSGKPYPAIFHKALKECSNIPKNRML 217 (242)
T ss_pred HHHHHHHHHHHHhCCCcE-EEECCC-EeccCCCceEecccHHHHHHHHhCCcEecCCCCCHHHHHHHHHHcCCCCcccEE
Confidence 789999999998899997 889887 44444556667776666643 23345899999999999999975 57999
Q ss_pred EEeCC-cccHHHHHHcCCeEEEEC
Q 032106 79 FFDDE-DRNIDAVSKMGVTGILVG 101 (147)
Q Consensus 79 ~VgDs-~~Di~~a~~~Gi~~i~v~ 101 (147)
||||+ .+|+.+|+++|+.+++|.
T Consensus 218 ~vGD~~~~Di~~a~~~G~~~i~v~ 241 (242)
T TIGR01459 218 MVGDSFYTDILGANRLGIDTALVL 241 (242)
T ss_pred EECCCcHHHHHHHHHCCCeEEEEe
Confidence 99999 589999999999999985
No 81
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=99.41 E-value=1.3e-12 Score=95.47 Aligned_cols=94 Identities=13% Similarity=0.114 Sum_probs=75.1
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccc-------eecCCCCCcHHHHHHHHHHcCCCCC
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAK-------EIFSSWSHKTDHFQRIHSRTGVPFN 75 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~-------~~~~~~kp~~~~~~~~~~~~~~~~~ 75 (147)
.++||+.++|..|+++ ++++|+||+. ...++.+++++|+..+|... ...+..++++.....++++++..+.
T Consensus 68 ~~~pg~~e~L~~L~~~-~~~~IvS~~~-~~~~~~~l~~~gl~~~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~~~~~~~ 145 (205)
T PRK13582 68 DPLPGAVEFLDWLRER-FQVVILSDTF-YEFAGPLMRQLGWPTLFCHSLEVDEDGMITGYDLRQPDGKRQAVKALKSLGY 145 (205)
T ss_pred CCCCCHHHHHHHHHhc-CCEEEEeCCc-HHHHHHHHHHcCCchhhcceEEECCCCeEECccccccchHHHHHHHHHHhCC
Confidence 5799999999999999 9999999888 77788999999998887542 0122223444455666677777789
Q ss_pred cEEEEeCCcccHHHHHHcCCeEE
Q 032106 76 SMLFFDDEDRNIDAVSKMGVTGI 98 (147)
Q Consensus 76 ~~v~VgDs~~Di~~a~~~Gi~~i 98 (147)
+++||||+.+|+.+++++|+.+.
T Consensus 146 ~~v~iGDs~~D~~~~~aa~~~v~ 168 (205)
T PRK13582 146 RVIAAGDSYNDTTMLGEADAGIL 168 (205)
T ss_pred eEEEEeCCHHHHHHHHhCCCCEE
Confidence 99999999999999999998653
No 82
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=99.38 E-value=4.2e-12 Score=92.62 Aligned_cols=99 Identities=15% Similarity=0.202 Sum_probs=83.1
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCccccccc-cee-------------cCCCCCcHHHHHHHH
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVA-KEI-------------FSSWSHKTDHFQRIH 67 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~-~~~-------------~~~~kp~~~~~~~~~ 67 (147)
+.++||+.++|+.++++|++++|+|++. ...++.+++.+|+..+|.. ... ...+++|...++.++
T Consensus 86 ~~~~~~~~~~l~~l~~~g~~v~ivS~s~-~~~v~~~~~~lg~~~~~~~~l~~~~~g~~~g~~~~~~~~g~~K~~~l~~~~ 164 (202)
T TIGR01490 86 SILYPEARDLIRWHKAEGHTIVLVSASL-TILVKPLARILGIDNAIGTRLEESEDGIYTGNIDGNNCKGEGKVHALAELL 164 (202)
T ss_pred HhccHHHHHHHHHHHHCCCEEEEEeCCc-HHHHHHHHHHcCCcceEecceEEcCCCEEeCCccCCCCCChHHHHHHHHHH
Confidence 3589999999999999999999999888 6777899999999888754 110 112466788899999
Q ss_pred HHcCCCCCcEEEEeCCcccHHHHHHcCCeEEEEC
Q 032106 68 SRTGVPFNSMLFFDDEDRNIDAVSKMGVTGILVG 101 (147)
Q Consensus 68 ~~~~~~~~~~v~VgDs~~Di~~a~~~Gi~~i~v~ 101 (147)
++.++++++++++||+.+|+.+++.+|..++..+
T Consensus 165 ~~~~~~~~~~~~~gDs~~D~~~~~~a~~~~~v~~ 198 (202)
T TIGR01490 165 AEEQIDLKDSYAYGDSISDLPLLSLVGHPYVVNP 198 (202)
T ss_pred HHcCCCHHHcEeeeCCcccHHHHHhCCCcEEeCC
Confidence 9999999999999999999999999998865543
No 83
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=99.36 E-value=1.2e-11 Score=93.61 Aligned_cols=51 Identities=20% Similarity=0.225 Sum_probs=48.4
Q ss_pred CCCcHHHHHHHHHHcCCCCCcEEEEeCCc-ccHHHHHHcCCeEEEECCCCCh
Q 032106 56 WSHKTDHFQRIHSRTGVPFNSMLFFDDED-RNIDAVSKMGVTGILVGNGVNL 106 (147)
Q Consensus 56 ~kp~~~~~~~~~~~~~~~~~~~v~VgDs~-~Di~~a~~~Gi~~i~v~~~~~~ 106 (147)
.||++.+|+.+++.+++++++++||||+. .|+.+|+++|+.+++|.+|...
T Consensus 177 gKP~~~~~~~~~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~v~v~~G~~~ 228 (249)
T TIGR01457 177 GKPNAIIMEKAVEHLGTEREETLMVGDNYLTDIRAGIDAGIDTLLVHTGVTK 228 (249)
T ss_pred CCChHHHHHHHHHHcCCCcccEEEECCCchhhHHHHHHcCCcEEEEcCCCCC
Confidence 69999999999999999999999999997 6999999999999999998764
No 84
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=99.33 E-value=3.7e-12 Score=79.48 Aligned_cols=53 Identities=23% Similarity=0.302 Sum_probs=49.6
Q ss_pred CCCCcHHHHHHHHHHcCCCCCcEEEEeCC-cccHHHHHHcCCeEEEECCCCChH
Q 032106 55 SWSHKTDHFQRIHSRTGVPFNSMLFFDDE-DRNIDAVSKMGVTGILVGNGVNLG 107 (147)
Q Consensus 55 ~~kp~~~~~~~~~~~~~~~~~~~v~VgDs-~~Di~~a~~~Gi~~i~v~~~~~~~ 107 (147)
.+||++.+|..+++++++++++++||||+ ..||.+|+++|+.+++|.+|....
T Consensus 2 ~gKP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~ilV~tG~~~~ 55 (75)
T PF13242_consen 2 CGKPSPGMLEQALKRLGVDPSRCVMVGDSLETDIEAAKAAGIDTILVLTGVYSP 55 (75)
T ss_dssp CSTTSHHHHHHHHHHHTSGGGGEEEEESSTTTHHHHHHHTTSEEEEESSSSSCC
T ss_pred CCCCcHHHHHHHHHHcCCCHHHEEEEcCCcHhHHHHHHHcCCcEEEECCCCCCH
Confidence 47999999999999999999999999999 889999999999999999987654
No 85
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=99.32 E-value=7.5e-12 Score=92.60 Aligned_cols=92 Identities=12% Similarity=0.096 Sum_probs=72.3
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCccccccc---c---eecCCCCCcHHHH----------HHH
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVA---K---EIFSSWSHKTDHF----------QRI 66 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~---~---~~~~~~kp~~~~~----------~~~ 66 (147)
.++||+.++|+.|+++|++++|+|++. ...++.+++.++...+|.. . +.+...+|.+..+ ..+
T Consensus 70 ~l~pg~~e~l~~l~~~g~~~~IvS~~~-~~~i~~il~~~~~~~~i~~n~~~~~~~~~~~~~p~~~~~~~~~~cg~~K~~~ 148 (214)
T TIGR03333 70 EIREGFREFVAFINEHGIPFYVISGGM-DFFVYPLLEGIVEKDRIYCNEADFSNEYIHIDWPHPCDGTCQNQCGCCKPSL 148 (214)
T ss_pred cccccHHHHHHHHHHCCCeEEEECCCc-HHHHHHHHHhhCCcccEEeceeEeeCCeeEEeCCCCCccccccCCCCCHHHH
Confidence 689999999999999999999999887 6777888888754444421 1 2223356665544 467
Q ss_pred HHHcCCCCCcEEEEeCCcccHHHHHHcCC
Q 032106 67 HSRTGVPFNSMLFFDDEDRNIDAVSKMGV 95 (147)
Q Consensus 67 ~~~~~~~~~~~v~VgDs~~Di~~a~~~Gi 95 (147)
+++++..+.+++||||+.+|+.+|+.+|+
T Consensus 149 l~~~~~~~~~~i~iGDg~~D~~~a~~Ad~ 177 (214)
T TIGR03333 149 IRKLSEPNDYHIVIGDSVTDVEAAKQSDL 177 (214)
T ss_pred HHHHhhcCCcEEEEeCCHHHHHHHHhCCe
Confidence 77777788999999999999999999998
No 86
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.31 E-value=9.3e-12 Score=102.90 Aligned_cols=90 Identities=12% Similarity=0.195 Sum_probs=75.1
Q ss_pred CchhHHHHHHHHHHCCCeEEEEcCCCCh-----------HHHHHHHHhcCcccccccc---eecCCCCCcHHHHHHHHHH
Q 032106 4 LYPHAKGILHALKDKGIDVAVASRSPSP-----------DIANTFLEKLNIKSMFVAK---EIFSSWSHKTDHFQRIHSR 69 (147)
Q Consensus 4 ~~pgv~~~L~~L~~~g~~l~i~S~~~~~-----------~~~~~~l~~~gl~~~f~~~---~~~~~~kp~~~~~~~~~~~ 69 (147)
++||+.+.|+.|++.|++++|+||.... ..+..+++.+|+. |+.+ ....++||++.++..++++
T Consensus 198 l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~lgip--fdviia~~~~~~RKP~pGm~~~a~~~ 275 (526)
T TIGR01663 198 IFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIVAKLGVP--FQVFIAIGAGFYRKPLTGMWDHLKEE 275 (526)
T ss_pred cccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHHHHcCCc--eEEEEeCCCCCCCCCCHHHHHHHHHh
Confidence 6899999999999999999999987631 2356788999985 6653 3334589999999999999
Q ss_pred cC----CCCCcEEEEeCCcccHHHHHHcCC
Q 032106 70 TG----VPFNSMLFFDDEDRNIDAVSKMGV 95 (147)
Q Consensus 70 ~~----~~~~~~v~VgDs~~Di~~a~~~Gi 95 (147)
++ +++++++||||+..|+.+++++|-
T Consensus 276 ~~~~~~Id~~~S~~VGDaagr~~~g~~ag~ 305 (526)
T TIGR01663 276 ANDGTEIQEDDCFFVGDAAGRPANGKAAGK 305 (526)
T ss_pred cCcccCCCHHHeEEeCCcccchHHHHhcCC
Confidence 85 899999999999999888777665
No 87
>PRK10444 UMP phosphatase; Provisional
Probab=99.31 E-value=2e-11 Score=92.51 Aligned_cols=52 Identities=17% Similarity=0.065 Sum_probs=49.0
Q ss_pred CCCcHHHHHHHHHHcCCCCCcEEEEeCCc-ccHHHHHHcCCeEEEECCCCChH
Q 032106 56 WSHKTDHFQRIHSRTGVPFNSMLFFDDED-RNIDAVSKMGVTGILVGNGVNLG 107 (147)
Q Consensus 56 ~kp~~~~~~~~~~~~~~~~~~~v~VgDs~-~Di~~a~~~Gi~~i~v~~~~~~~ 107 (147)
.||++.+|..+++++++++++++||||+. .|+.+|+++|+.+++|.+|....
T Consensus 173 gKP~~~~~~~~~~~~~~~~~~~v~IGD~~~tDi~~A~~~G~~~vlV~~G~~~~ 225 (248)
T PRK10444 173 GKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILVLSGVSTL 225 (248)
T ss_pred CCCCHHHHHHHHHHcCCCcccEEEECCCcHHHHHHHHHcCCCEEEECCCCCCH
Confidence 69999999999999999999999999997 79999999999999999987654
No 88
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=99.30 E-value=3.3e-11 Score=92.38 Aligned_cols=114 Identities=12% Similarity=0.107 Sum_probs=84.2
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccc---------eecCCCCCcH---------HHHH
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAK---------EIFSSWSHKT---------DHFQ 64 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~---------~~~~~~kp~~---------~~~~ 64 (147)
.+.||+.++|+.|+++|++++|+|++. ...++.+++++|+...+..+ +..-.++|.| ..++
T Consensus 121 ~l~pG~~efl~~L~~~GIpv~IvS~G~-~~~Ie~vL~~lgl~~~~~~IvSN~L~f~~dGvltG~~~P~i~~~~K~~~v~~ 199 (277)
T TIGR01544 121 MLKDGYENFFDKLQQHSIPVFIFSAGI-GNVLEEVLRQAGVYHPNVKVVSNFMDFDEDGVLKGFKGPLIHTFNKNHDVAL 199 (277)
T ss_pred ccCcCHHHHHHHHHHCCCcEEEEeCCc-HHHHHHHHHHcCCCCcCceEEeeeEEECCCCeEeCCCCCcccccccHHHHHH
Confidence 688999999999999999999999888 78889999999986443222 1122245555 6677
Q ss_pred HHHHHcC--CCCCcEEEEeCCcccHHHHHHc-C---CeEEEECCCCChHHHHHHHHHHHHhhc
Q 032106 65 RIHSRTG--VPFNSMLFFDDEDRNIDAVSKM-G---VTGILVGNGVNLGALRQGLTKFSQNWN 121 (147)
Q Consensus 65 ~~~~~~~--~~~~~~v~VgDs~~Di~~a~~~-G---i~~i~v~~~~~~~~~~~~l~~~~~~~~ 121 (147)
...+.++ ..+++|++|||+.+|+.||..+ . +-.|++... ..++.++.|.+...
T Consensus 200 ~~~~~~~~~~~~~~vI~vGDs~~Dl~ma~g~~~~~~~l~igfln~----~~e~~l~~y~~~~D 258 (277)
T TIGR01544 200 RNTEYFNQLKDRSNIILLGDSQGDLRMADGVANVEHILKIGYLND----RVDELLEKYMDSYD 258 (277)
T ss_pred HHHHHhCccCCcceEEEECcChhhhhHhcCCCcccceEEEEeccc----CHHHHHHHHHHhCC
Confidence 7888888 8999999999999999998776 2 233444443 34445566666553
No 89
>PTZ00445 p36-lilke protein; Provisional
Probab=99.28 E-value=2.1e-11 Score=89.44 Aligned_cols=100 Identities=19% Similarity=0.210 Sum_probs=78.7
Q ss_pred CchhHHHHHHHHHHCCCeEEEEcCCCChH--------------HHHHHHHhcCcc----c---ccccc-------eecCC
Q 032106 4 LYPHAKGILHALKDKGIDVAVASRSPSPD--------------IANTFLEKLNIK----S---MFVAK-------EIFSS 55 (147)
Q Consensus 4 ~~pgv~~~L~~L~~~g~~l~i~S~~~~~~--------------~~~~~l~~~gl~----~---~f~~~-------~~~~~ 55 (147)
+-|+...++..|++.|++++|||=++... +++..++..+-. . |.... ...+-
T Consensus 76 ~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~s~~~~~i~~~~~yyp~~w~~p~~y~~~gl 155 (219)
T PTZ00445 76 VTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAALKKSKCDFKIKKVYAYYPKFWQEPSDYRPLGL 155 (219)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHHHhcCccceeeeeeeeCCcccCChhhhhhhcc
Confidence 67899999999999999999999666433 456666644322 1 11111 11233
Q ss_pred CCCcHHH--H--HHHHHHcCCCCCcEEEEeCCcccHHHHHHcCCeEEEECCC
Q 032106 56 WSHKTDH--F--QRIHSRTGVPFNSMLFFDDEDRNIDAVSKMGVTGILVGNG 103 (147)
Q Consensus 56 ~kp~~~~--~--~~~~~~~~~~~~~~v~VgDs~~Di~~a~~~Gi~~i~v~~~ 103 (147)
.||.+.. | +.+++++|+.|++++||+|+..++++|+++|+.++.+..+
T Consensus 156 ~KPdp~iK~yHle~ll~~~gl~peE~LFIDD~~~NVeaA~~lGi~ai~f~~~ 207 (219)
T PTZ00445 156 DAPMPLDKSYHLKQVCSDFNVNPDEILFIDDDMNNCKNALKEGYIALHVTGN 207 (219)
T ss_pred cCCCccchHHHHHHHHHHcCCCHHHeEeecCCHHHHHHHHHCCCEEEEcCCh
Confidence 7888888 8 9999999999999999999999999999999999999754
No 90
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=99.28 E-value=2.4e-11 Score=86.60 Aligned_cols=90 Identities=18% Similarity=0.322 Sum_probs=74.8
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccc---e------------ecCCCCCcHHHHHHHH
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAK---E------------IFSSWSHKTDHFQRIH 67 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~---~------------~~~~~kp~~~~~~~~~ 67 (147)
.++||+.++|+.++++|++++|+|++. ...++.+++.+|+..+|... + .......|...+..++
T Consensus 73 ~~~~g~~~~l~~l~~~g~~~~ivS~~~-~~~i~~~~~~~g~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~l~~~~ 151 (177)
T TIGR01488 73 ALRPGARELISWLKERGIDTVIVSGGF-DFFVEPVAEKLGIDDVFANRLEFDDNGLLTGPIEGQVNPEGECKGKVLKELL 151 (177)
T ss_pred CcCcCHHHHHHHHHHCCCEEEEECCCc-HHHHHHHHHHcCCchheeeeEEECCCCEEeCccCCcccCCcchHHHHHHHHH
Confidence 478999999999999999999999887 67788999999998766431 0 1122456778899989
Q ss_pred HHcCCCCCcEEEEeCCcccHHHHHHc
Q 032106 68 SRTGVPFNSMLFFDDEDRNIDAVSKM 93 (147)
Q Consensus 68 ~~~~~~~~~~v~VgDs~~Di~~a~~~ 93 (147)
+.+++++++++||||+.+|+.+++.+
T Consensus 152 ~~~~~~~~~~~~iGDs~~D~~~~~~a 177 (177)
T TIGR01488 152 EESKITLKKIIAVGDSVNDLPMLKLA 177 (177)
T ss_pred HHhCCCHHHEEEEeCCHHHHHHHhcC
Confidence 99999999999999999999998753
No 91
>PLN02645 phosphoglycolate phosphatase
Probab=99.24 E-value=1.5e-11 Score=95.97 Aligned_cols=100 Identities=14% Similarity=0.034 Sum_probs=73.8
Q ss_pred HHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCccccccccee------cCCCCCcHHHHHHHHHHcCCCCCcEEEEe
Q 032106 8 AKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAKEI------FSSWSHKTDHFQRIHSRTGVPFNSMLFFD 81 (147)
Q Consensus 8 v~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~~------~~~~kp~~~~~~~~~~~~~~~~~~~v~Vg 81 (147)
...+...|+.++-.++|+||.+........+..+|+..+|..+.. ....||++.+|..+++++++++++++|||
T Consensus 175 l~~a~~~l~~~~g~~~i~tn~d~~~~~~~~~~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~a~~~~~~~~~~~~~VG 254 (311)
T PLN02645 175 IQYATLCIRENPGCLFIATNRDAVTHLTDAQEWAGAGSMVGAIKGSTEREPLVVGKPSTFMMDYLANKFGIEKSQICMVG 254 (311)
T ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCCCCCCCccchHHHHHHHHHHhCCCcccCCCChHHHHHHHHHHcCCCcccEEEEc
Confidence 344555665433458999987732211233355677667776411 11259999999999999999999999999
Q ss_pred CCc-ccHHHHHHcCCeEEEECCCCChH
Q 032106 82 DED-RNIDAVSKMGVTGILVGNGVNLG 107 (147)
Q Consensus 82 Ds~-~Di~~a~~~Gi~~i~v~~~~~~~ 107 (147)
|+. .|+.+|+++|+.+++|.+|....
T Consensus 255 D~~~~Di~~A~~aG~~~ilV~~G~~~~ 281 (311)
T PLN02645 255 DRLDTDILFGQNGGCKTLLVLSGVTSE 281 (311)
T ss_pred CCcHHHHHHHHHcCCCEEEEcCCCCCH
Confidence 997 79999999999999999987643
No 92
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=99.24 E-value=6.2e-11 Score=93.36 Aligned_cols=99 Identities=16% Similarity=0.148 Sum_probs=79.9
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhc-C-------cccccccceecCCCCC----------------
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKL-N-------IKSMFVAKEIFSSWSH---------------- 58 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~-g-------l~~~f~~~~~~~~~kp---------------- 58 (147)
...||+.++|+.|+++|++++|+||+. ...++.+++.+ | +.+||+.+ +.+..||
T Consensus 184 ~~~pgl~elL~~Lr~~G~klfLvTNS~-~~yt~~im~~l~g~~~~~~~w~~yFD~I-It~a~KP~FF~~~~pf~~v~~~~ 261 (343)
T TIGR02244 184 LRDPKLPLFLSKLKEHGKKLFLLTNSD-YDYTDKGMKYLLGPFLGEHDWRDYFDVV-IVDARKPGFFTEGRPFRQVDVET 261 (343)
T ss_pred ccchhHHHHHHHHHHCCCeEEEEeCCC-HHHHHHHHHHhhCCcccccchHhhCcEE-EeCCCCCcccCCCCceEEEeCCC
Confidence 358999999999999999999999998 77788999996 7 88898763 1111111
Q ss_pred -----c-------H-----HHHHHHHHHcCCCCCcEEEEeCCcc-cHHHHH-HcCCeEEEECCC
Q 032106 59 -----K-------T-----DHFQRIHSRTGVPFNSMLFFDDEDR-NIDAVS-KMGVTGILVGNG 103 (147)
Q Consensus 59 -----~-------~-----~~~~~~~~~~~~~~~~~v~VgDs~~-Di~~a~-~~Gi~~i~v~~~ 103 (147)
. . ..+..+.+.+|+.+++++||||++. |+..++ .+||.+++|...
T Consensus 262 g~~~~~~~~~l~~g~vY~gGn~~~~~~~l~~~~~~vlYvGD~i~~Di~~~kk~~Gw~TvlI~pE 325 (343)
T TIGR02244 262 GSLKWGEVDGLEPGKVYSGGSLKQFHELLKWRGKEVLYFGDHIYGDLLRSKKKRGWRTAAIIPE 325 (343)
T ss_pred CcccCCccccccCCCeEeCCCHHHHHHHHCCCCCcEEEECCcchHHHHhhHHhcCcEEEEEchh
Confidence 1 1 2346777888999999999999988 999998 899999999763
No 93
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=99.22 E-value=1.6e-10 Score=85.14 Aligned_cols=96 Identities=8% Similarity=0.064 Sum_probs=74.8
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccc----e--e-cC---CCCCcHHHHHHHHHHcCC
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAK----E--I-FS---SWSHKTDHFQRIHSRTGV 72 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~----~--~-~~---~~kp~~~~~~~~~~~~~~ 72 (147)
.++||+.++|+.|++.+ +++|+|++. ...++.+++.+|++.+|... + . .+ ..++.+..+...+++.+.
T Consensus 68 ~l~pga~ell~~lk~~~-~~~IVS~~~-~~~~~~il~~lgi~~~~an~l~~~~~g~~tG~~~~~~~~K~~~l~~l~~~~~ 145 (203)
T TIGR02137 68 KPLEGAVEFVDWLRERF-QVVILSDTF-YEFSQPLMRQLGFPTLLCHKLEIDDSDRVVGYQLRQKDPKRQSVIAFKSLYY 145 (203)
T ss_pred CCCccHHHHHHHHHhCC-eEEEEeCCh-HHHHHHHHHHcCCchhhceeeEEecCCeeECeeecCcchHHHHHHHHHhhCC
Confidence 68999999999999975 999999887 77889999999999888521 1 1 11 234444444444466553
Q ss_pred CCCcEEEEeCCcccHHHHHHcCCeEEEECCC
Q 032106 73 PFNSMLFFDDEDRNIDAVSKMGVTGILVGNG 103 (147)
Q Consensus 73 ~~~~~v~VgDs~~Di~~a~~~Gi~~i~v~~~ 103 (147)
+++||||+.+|+.+++.+|+.+++...+
T Consensus 146 ---~~v~vGDs~nDl~ml~~Ag~~ia~~ak~ 173 (203)
T TIGR02137 146 ---RVIAAGDSYNDTTMLSEAHAGILFHAPE 173 (203)
T ss_pred ---CEEEEeCCHHHHHHHHhCCCCEEecCCH
Confidence 7999999999999999999998888653
No 94
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=99.19 E-value=1.3e-10 Score=83.36 Aligned_cols=103 Identities=20% Similarity=0.347 Sum_probs=84.6
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHh---cCcccccccc-eecCCCCCcHHHHHHHHHHcCCCCCcE
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEK---LNIKSMFVAK-EIFSSWSHKTDHFQRIHSRTGVPFNSM 77 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~---~gl~~~f~~~-~~~~~~kp~~~~~~~~~~~~~~~~~~~ 77 (147)
.++||++.++|++.+..|++++|.|++. ....+-+... .+|..||+.. +.....|.....|..++...|++|.++
T Consensus 102 ahlypDav~~ik~wk~~g~~vyiYSSGS-V~AQkL~Fghs~agdL~~lfsGyfDttiG~KrE~~SY~kIa~~iGl~p~ei 180 (229)
T COG4229 102 AHLYPDAVQAIKRWKALGMRVYIYSSGS-VKAQKLFFGHSDAGDLNSLFSGYFDTTIGKKRESQSYAKIAGDIGLPPAEI 180 (229)
T ss_pred cccCHhHHHHHHHHHHcCCcEEEEcCCC-chhHHHhhcccccccHHhhhcceeeccccccccchhHHHHHHhcCCCchhe
Confidence 4689999999999999999999999877 4443444433 3455566663 344457889999999999999999999
Q ss_pred EEEeCCcccHHHHHHcCCeEEEECCCCC
Q 032106 78 LFFDDEDRNIDAVSKMGVTGILVGNGVN 105 (147)
Q Consensus 78 v~VgDs~~Di~~a~~~Gi~~i~v~~~~~ 105 (147)
+|+.|.+..+.+|+.+|+.++++.+..+
T Consensus 181 lFLSDn~~EL~AA~~vGl~t~l~~R~g~ 208 (229)
T COG4229 181 LFLSDNPEELKAAAGVGLATGLAVRPGN 208 (229)
T ss_pred EEecCCHHHHHHHHhcchheeeeecCCC
Confidence 9999999999999999999999977543
No 95
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=99.18 E-value=2.1e-10 Score=95.82 Aligned_cols=86 Identities=20% Similarity=0.198 Sum_probs=70.2
Q ss_pred CCCchhHHHHHHHHHHCC-CeEEEEcCCCChHHHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHHcCCCCCcEEEE
Q 032106 2 PSLYPHAKGILHALKDKG-IDVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLFF 80 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g-~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~V 80 (147)
..++||+.++|+.|+++| ++++|+||.+ ...++.+++++|+.++|..+ . +++|.. ++++++..+.+++||
T Consensus 383 d~~~~g~~e~l~~L~~~g~i~v~ivTgd~-~~~a~~i~~~lgi~~~f~~~--~--p~~K~~----~v~~l~~~~~~v~~v 453 (556)
T TIGR01525 383 DQLRPEAKEAIAALKRAGGIKLVMLTGDN-RSAAEAVAAELGIDEVHAEL--L--PEDKLA----IVKELQEEGGVVAMV 453 (556)
T ss_pred ccchHhHHHHHHHHHHcCCCeEEEEeCCC-HHHHHHHHHHhCCCeeeccC--C--HHHHHH----HHHHHHHcCCEEEEE
Confidence 368999999999999999 9999999777 77889999999999888752 1 123444 444444466799999
Q ss_pred eCCcccHHHHHHcCCe
Q 032106 81 DDEDRNIDAVSKMGVT 96 (147)
Q Consensus 81 gDs~~Di~~a~~~Gi~ 96 (147)
||+.+|+.+++++|+.
T Consensus 454 GDg~nD~~al~~A~vg 469 (556)
T TIGR01525 454 GDGINDAPALAAADVG 469 (556)
T ss_pred ECChhHHHHHhhCCEe
Confidence 9999999999999953
No 96
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.17 E-value=2.6e-10 Score=84.59 Aligned_cols=100 Identities=17% Similarity=0.283 Sum_probs=85.5
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccc---ee---cC-------CCCCcHHHHHHHHH
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAK---EI---FS-------SWSHKTDHFQRIHS 68 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~---~~---~~-------~~kp~~~~~~~~~~ 68 (147)
+.++||+.++++.++.+|++++|+|++. ...++.+.+.+|++..+... +. .+ ..+.|.....++++
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~-~~lv~~ia~~lg~d~~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~~~~ 154 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGF-TFLVEPIAERLGIDYVVANELEIDDGKLTGRVVGPICDGEGKAKALRELAA 154 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCCh-HHHHHHHHHHhCCchheeeEEEEeCCEEeceeeeeecCcchHHHHHHHHHH
Confidence 6789999999999999999999999888 68889999999998766442 11 11 14668889999999
Q ss_pred HcCCCCCcEEEEeCCcccHHHHHHcCCeEEEECC
Q 032106 69 RTGVPFNSMLFFDDEDRNIDAVSKMGVTGILVGN 102 (147)
Q Consensus 69 ~~~~~~~~~v~VgDs~~Di~~a~~~Gi~~i~v~~ 102 (147)
++|+.+++++++||+.+|+.+...+|...+.-+.
T Consensus 155 ~~g~~~~~~~a~gDs~nDlpml~~ag~~ia~n~~ 188 (212)
T COG0560 155 ELGIPLEETVAYGDSANDLPMLEAAGLPIAVNPK 188 (212)
T ss_pred HcCCCHHHeEEEcCchhhHHHHHhCCCCeEeCcC
Confidence 9999999999999999999999999998665544
No 97
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=99.17 E-value=3.9e-10 Score=84.91 Aligned_cols=91 Identities=19% Similarity=0.179 Sum_probs=71.4
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCCChHHHH--HHHHhcCccc-ccccceecCCCCCcHHHHHHHHHHcCCCCCcEE
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVASRSPSPDIAN--TFLEKLNIKS-MFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSML 78 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~--~~l~~~gl~~-~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v 78 (147)
..++||+.++|+.|+++|++++++||+. +.... ..++.+|+.. +|+.+ ++...-....+..+++++++.+.+++
T Consensus 23 ~~~~pga~e~L~~L~~~G~~~~ivTN~~-~~~~~~~~~L~~~gl~~~~~~~I--i~s~~~~~~~l~~~~~~~~~~~~~~~ 99 (242)
T TIGR01459 23 NHTYPGAVQNLNKIIAQGKPVYFVSNSP-RNIFSLHKTLKSLGINADLPEMI--ISSGEIAVQMILESKKRFDIRNGIIY 99 (242)
T ss_pred CccCccHHHHHHHHHHCCCEEEEEeCCC-CChHHHHHHHHHCCCCccccceE--EccHHHHHHHHHhhhhhccCCCceEE
Confidence 4689999999999999999999999987 44444 6789999987 88863 32211123567777788899999999
Q ss_pred EEeCCcccHHHHHHcCC
Q 032106 79 FFDDEDRNIDAVSKMGV 95 (147)
Q Consensus 79 ~VgDs~~Di~~a~~~Gi 95 (147)
+|||+..|++....+|.
T Consensus 100 ~vGd~~~d~~~~~~~~~ 116 (242)
T TIGR01459 100 LLGHLENDIINLMQCYT 116 (242)
T ss_pred EeCCcccchhhhcCCCc
Confidence 99999999887766554
No 98
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=99.16 E-value=2.3e-10 Score=81.74 Aligned_cols=96 Identities=21% Similarity=0.203 Sum_probs=76.2
Q ss_pred CCCchhHHHHHHHHHHCCCe--EEEEcCCC------ChHHHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHHcCC-
Q 032106 2 PSLYPHAKGILHALKDKGID--VAVASRSP------SPDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGV- 72 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~--l~i~S~~~------~~~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~- 72 (147)
.++.|.+.+.+++|++.+.. ++|+||+. ....++.+.+.+|+.-+ . ....|| ..+..+++.++.
T Consensus 58 ~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIpvl-~----h~~kKP--~~~~~i~~~~~~~ 130 (168)
T PF09419_consen 58 DEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALGIPVL-R----HRAKKP--GCFREILKYFKCQ 130 (168)
T ss_pred CcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhCCcEE-E----eCCCCC--ccHHHHHHHHhhc
Confidence 46789999999999998764 99999873 24556778888997522 1 123455 777788877764
Q ss_pred ----CCCcEEEEeCCcc-cHHHHHHcCCeEEEECCCC
Q 032106 73 ----PFNSMLFFDDEDR-NIDAVSKMGVTGILVGNGV 104 (147)
Q Consensus 73 ----~~~~~v~VgDs~~-Di~~a~~~Gi~~i~v~~~~ 104 (147)
.|++++||||... |+-+|+.+|+.+|++..|.
T Consensus 131 ~~~~~p~eiavIGDrl~TDVl~gN~~G~~tilv~~gv 167 (168)
T PF09419_consen 131 KVVTSPSEIAVIGDRLFTDVLMGNRMGSYTILVTDGV 167 (168)
T ss_pred cCCCCchhEEEEcchHHHHHHHhhccCceEEEEecCc
Confidence 4999999999988 9999999999999998874
No 99
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=99.12 E-value=1e-09 Score=83.93 Aligned_cols=52 Identities=17% Similarity=0.234 Sum_probs=49.4
Q ss_pred CCCcHHHHHHHHHHcCCCCCcEEEEeCCcc-cHHHHHHcCCeEEEECCCCChH
Q 032106 56 WSHKTDHFQRIHSRTGVPFNSMLFFDDEDR-NIDAVSKMGVTGILVGNGVNLG 107 (147)
Q Consensus 56 ~kp~~~~~~~~~~~~~~~~~~~v~VgDs~~-Di~~a~~~Gi~~i~v~~~~~~~ 107 (147)
.||.+.+|+.+++.++..+++++||||+.. ||.+|+++||.+++|..|...+
T Consensus 189 GKP~~~i~~~al~~~~~~~~~~~mVGD~~~TDI~~a~~~G~~t~LV~TGv~~~ 241 (269)
T COG0647 189 GKPSPAIYEAALEKLGLDRSEVLMVGDRLDTDILGAKAAGLDTLLVLTGVSSA 241 (269)
T ss_pred CCCCHHHHHHHHHHhCCCcccEEEEcCCchhhHHHHHHcCCCEEEEccCCCCh
Confidence 799999999999999999999999999988 9999999999999999997744
No 100
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=99.10 E-value=4.5e-10 Score=93.57 Aligned_cols=85 Identities=18% Similarity=0.243 Sum_probs=70.3
Q ss_pred CCCchhHHHHHHHHHHCCC-eEEEEcCCCChHHHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHHcCCCCCcEEEE
Q 032106 2 PSLYPHAKGILHALKDKGI-DVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLFF 80 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~-~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~V 80 (147)
..++||+.++|+.|++.|+ +++++||.+ ...++.+++++|++++|.. .. +.+|.. ++++++...++++||
T Consensus 361 d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~-~~~a~~i~~~lgi~~~f~~--~~--p~~K~~----~i~~l~~~~~~v~~v 431 (536)
T TIGR01512 361 DEPRPDAAEAIAELKALGIEKVVMLTGDR-RAVAERVARELGIDEVHAE--LL--PEDKLE----IVKELREKYGPVAMV 431 (536)
T ss_pred ccchHHHHHHHHHHHHcCCCcEEEEcCCC-HHHHHHHHHHcCChhhhhc--cC--cHHHHH----HHHHHHhcCCEEEEE
Confidence 3689999999999999999 999999777 7888999999999988864 22 223433 455555566899999
Q ss_pred eCCcccHHHHHHcCC
Q 032106 81 DDEDRNIDAVSKMGV 95 (147)
Q Consensus 81 gDs~~Di~~a~~~Gi 95 (147)
||+.+|+.+++++|+
T Consensus 432 GDg~nD~~al~~A~v 446 (536)
T TIGR01512 432 GDGINDAPALAAADV 446 (536)
T ss_pred eCCHHHHHHHHhCCE
Confidence 999999999999996
No 101
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=99.06 E-value=1.2e-09 Score=79.89 Aligned_cols=48 Identities=21% Similarity=0.319 Sum_probs=46.0
Q ss_pred CCCcHHHHHHHHHHcCCCCCcEEEEeCCcc-cHHHHHHcCCeEEEECCC
Q 032106 56 WSHKTDHFQRIHSRTGVPFNSMLFFDDEDR-NIDAVSKMGVTGILVGNG 103 (147)
Q Consensus 56 ~kp~~~~~~~~~~~~~~~~~~~v~VgDs~~-Di~~a~~~Gi~~i~v~~~ 103 (147)
.||.+.+|+.+++.+|++|+++|||||..+ |+-.|+++||+.|.|..|
T Consensus 180 GKP~~~fFe~al~~~gv~p~~aVMIGDD~~dDvgGAq~~GMrgilVkTG 228 (262)
T KOG3040|consen 180 GKPSPFFFESALQALGVDPEEAVMIGDDLNDDVGGAQACGMRGILVKTG 228 (262)
T ss_pred cCCCHHHHHHHHHhcCCChHHheEEccccccchhhHhhhcceeEEeecc
Confidence 799999999999999999999999999988 899999999999999765
No 102
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=99.04 E-value=3.3e-10 Score=80.71 Aligned_cols=110 Identities=13% Similarity=0.110 Sum_probs=84.0
Q ss_pred CchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCccc-ccccc---eecCCCCCcHHHHHHHHHHcCCCCCcEEE
Q 032106 4 LYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKS-MFVAK---EIFSSWSHKTDHFQRIHSRTGVPFNSMLF 79 (147)
Q Consensus 4 ~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~-~f~~~---~~~~~~kp~~~~~~~~~~~~~~~~~~~v~ 79 (147)
.-||+.++|+.|.+. +.++|.|++. +..++.+++.++... +|+.. +.+...+++ |.+.+..+|.+++++||
T Consensus 43 ~RPgl~eFL~~l~~~-yei~I~Ts~~-~~yA~~il~~ldp~~~~f~~~l~r~~~~~~~~~---~~K~L~~l~~~~~~vIi 117 (162)
T TIGR02251 43 KRPHVDEFLERVSKW-YELVIFTASL-EEYADPVLDILDRGGKVISRRLYRESCVFTNGK---YVKDLSLVGKDLSKVII 117 (162)
T ss_pred ECCCHHHHHHHHHhc-CEEEEEcCCc-HHHHHHHHHHHCcCCCEEeEEEEccccEEeCCC---EEeEchhcCCChhhEEE
Confidence 469999999999987 9999999887 788899999999876 77664 233323444 67778889999999999
Q ss_pred EeCCcccHHHHHHcCCeEEEECCCCChHHHHHHHHHHHHh
Q 032106 80 FDDEDRNIDAVSKMGVTGILVGNGVNLGALRQGLTKFSQN 119 (147)
Q Consensus 80 VgDs~~Di~~a~~~Gi~~i~v~~~~~~~~~~~~l~~~~~~ 119 (147)
|||++.++.++..+|+.+....... .+.....+..|.+.
T Consensus 118 VDD~~~~~~~~~~NgI~i~~f~~~~-~D~~L~~l~~~L~~ 156 (162)
T TIGR02251 118 IDNSPYSYSLQPDNAIPIKSWFGDP-NDTELLNLIPFLEG 156 (162)
T ss_pred EeCChhhhccCccCEeecCCCCCCC-CHHHHHHHHHHHHH
Confidence 9999999999999999877765333 33223334455444
No 103
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=99.03 E-value=6.1e-10 Score=77.96 Aligned_cols=82 Identities=18% Similarity=0.315 Sum_probs=73.1
Q ss_pred HHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHHcCCCCCcEEEEeCCcccHHHH
Q 032106 11 ILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLFFDDEDRNIDAV 90 (147)
Q Consensus 11 ~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgDs~~Di~~a 90 (147)
.|+.|.+.|++++|+|+.+ ..+++..++.+|+..+|-. .+.|...|..+++++++.++++.||||..+|+...
T Consensus 43 Gik~l~~~Gi~vAIITGr~-s~ive~Ra~~LGI~~~~qG------~~dK~~a~~~L~~~~~l~~e~~ayiGDD~~Dlpvm 115 (170)
T COG1778 43 GIKLLLKSGIKVAIITGRD-SPIVEKRAKDLGIKHLYQG------ISDKLAAFEELLKKLNLDPEEVAYVGDDLVDLPVM 115 (170)
T ss_pred HHHHHHHcCCeEEEEeCCC-CHHHHHHHHHcCCceeeec------hHhHHHHHHHHHHHhCCCHHHhhhhcCccccHHHH
Confidence 4788999999999999888 5677899999999887766 34589999999999999999999999999999999
Q ss_pred HHcCCeEEE
Q 032106 91 SKMGVTGIL 99 (147)
Q Consensus 91 ~~~Gi~~i~ 99 (147)
.++|+.+..
T Consensus 116 ~~vGls~a~ 124 (170)
T COG1778 116 EKVGLSVAV 124 (170)
T ss_pred HHcCCcccc
Confidence 999998653
No 104
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=98.99 E-value=3.3e-09 Score=88.91 Aligned_cols=85 Identities=19% Similarity=0.253 Sum_probs=68.4
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHHcCCCCCcEEEEe
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLFFD 81 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~Vg 81 (147)
..++||+.++|+.|++.|++++++|+.+ ...++.+++++|++ +|.. . .+++|...++.+ ...+++++|||
T Consensus 404 d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~-~~~a~~ia~~lgi~-~~~~--~--~p~~K~~~v~~l----~~~~~~v~~VG 473 (562)
T TIGR01511 404 DQLRPEAKEVIQALKRRGIEPVMLTGDN-RKTAKAVAKELGIN-VRAE--V--LPDDKAALIKEL----QEKGRVVAMVG 473 (562)
T ss_pred ccccHHHHHHHHHHHHcCCeEEEEcCCC-HHHHHHHHHHcCCc-EEcc--C--ChHHHHHHHHHH----HHcCCEEEEEe
Confidence 4689999999999999999999999777 78889999999995 4442 1 123444444444 34678999999
Q ss_pred CCcccHHHHHHcCCe
Q 032106 82 DEDRNIDAVSKMGVT 96 (147)
Q Consensus 82 Ds~~Di~~a~~~Gi~ 96 (147)
|+.+|+.+++++|+.
T Consensus 474 Dg~nD~~al~~A~vg 488 (562)
T TIGR01511 474 DGINDAPALAQADVG 488 (562)
T ss_pred CCCccHHHHhhCCEE
Confidence 999999999999974
No 105
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=98.94 E-value=3.2e-09 Score=75.47 Aligned_cols=94 Identities=13% Similarity=0.159 Sum_probs=65.0
Q ss_pred chhHHHHHHHHHHCCCeEEEEcCCCCh-------------HHHHHHHHhcCccccccc-ceecCCCCCcHHHHHHHHHHc
Q 032106 5 YPHAKGILHALKDKGIDVAVASRSPSP-------------DIANTFLEKLNIKSMFVA-KEIFSSWSHKTDHFQRIHSRT 70 (147)
Q Consensus 5 ~pgv~~~L~~L~~~g~~l~i~S~~~~~-------------~~~~~~l~~~gl~~~f~~-~~~~~~~kp~~~~~~~~~~~~ 70 (147)
.|+|++.|+.|++.|+.++|+||.... .-++.+++.+++.-.+-. ...-.++||.+.+++.+++++
T Consensus 31 ~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il~~l~ip~~~~~a~~~d~~RKP~~GM~~~~~~~~ 110 (159)
T PF08645_consen 31 PPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLENFHEKIENILKELGIPIQVYAAPHKDPCRKPNPGMWEFALKDY 110 (159)
T ss_dssp -TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHHHHCTS-EEEEECGCSSTTSTTSSHHHHHHCCCT
T ss_pred chhHHHHHHHHHhcCCeEEEEeCccccccccccchHHHHHHHHHHHHHHcCCceEEEecCCCCCCCCCchhHHHHHHHhc
Confidence 468999999999999999999986321 112335556666421111 112256999999999999998
Q ss_pred CC----CCCcEEEEeCC-----------cccHHHHHHcCCeEE
Q 032106 71 GV----PFNSMLFFDDE-----------DRNIDAVSKMGVTGI 98 (147)
Q Consensus 71 ~~----~~~~~v~VgDs-----------~~Di~~a~~~Gi~~i 98 (147)
+. +.++++||||+ ..|...|.++|+++.
T Consensus 111 ~~~~~id~~~Sf~VGDaagr~~~~~d~s~~D~~fA~N~gi~f~ 153 (159)
T PF08645_consen 111 NDGVEIDLANSFYVGDAAGRSKKKKDFSDSDRKFALNCGIKFY 153 (159)
T ss_dssp STT--S-CCC-EEEESSCHCTB-S--S--HHHHHHHHHT--EE
T ss_pred cccccccccceEEEeccCCCCCcccccChhHHHHHHHcCCccc
Confidence 75 88999999996 568999999999864
No 106
>PRK10671 copA copper exporting ATPase; Provisional
Probab=98.94 E-value=8.2e-09 Score=90.03 Aligned_cols=87 Identities=15% Similarity=0.172 Sum_probs=72.4
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHHcCCCCCcEEEEe
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLFFD 81 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~Vg 81 (147)
..++||+.++|+.|++.|++++++|+.+ ...++.+++.+|+.++|.. . .|+.-..++++++..+++++|||
T Consensus 649 d~~r~~a~~~i~~L~~~gi~v~~~Tgd~-~~~a~~ia~~lgi~~~~~~--~------~p~~K~~~i~~l~~~~~~v~~vG 719 (834)
T PRK10671 649 DPLRSDSVAALQRLHKAGYRLVMLTGDN-PTTANAIAKEAGIDEVIAG--V------LPDGKAEAIKRLQSQGRQVAMVG 719 (834)
T ss_pred CcchhhHHHHHHHHHHCCCeEEEEcCCC-HHHHHHHHHHcCCCEEEeC--C------CHHHHHHHHHHHhhcCCEEEEEe
Confidence 3678999999999999999999999766 7778899999999887764 1 12233456677777788999999
Q ss_pred CCcccHHHHHHcCCeE
Q 032106 82 DEDRNIDAVSKMGVTG 97 (147)
Q Consensus 82 Ds~~Di~~a~~~Gi~~ 97 (147)
|+.+|+.+++.+|+..
T Consensus 720 Dg~nD~~al~~Agvgi 735 (834)
T PRK10671 720 DGINDAPALAQADVGI 735 (834)
T ss_pred CCHHHHHHHHhCCeeE
Confidence 9999999999999943
No 107
>PRK08238 hypothetical protein; Validated
Probab=98.92 E-value=1.4e-08 Score=83.60 Aligned_cols=94 Identities=13% Similarity=0.163 Sum_probs=72.0
Q ss_pred CchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccc---eecCCCCCcHHHHHHHHHHcCCCCCcEEEE
Q 032106 4 LYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAK---EIFSSWSHKTDHFQRIHSRTGVPFNSMLFF 80 (147)
Q Consensus 4 ~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~---~~~~~~kp~~~~~~~~~~~~~~~~~~~v~V 80 (147)
++||+.+.|+.++++|++++|+|+++ ...++.+++++|+ |+.+ +.....||++.. ..+.+.++ .++++|+
T Consensus 73 ~~pga~e~L~~lk~~G~~v~LaTas~-~~~a~~i~~~lGl---Fd~Vigsd~~~~~kg~~K~-~~l~~~l~--~~~~~yv 145 (479)
T PRK08238 73 YNEEVLDYLRAERAAGRKLVLATASD-ERLAQAVAAHLGL---FDGVFASDGTTNLKGAAKA-AALVEAFG--ERGFDYA 145 (479)
T ss_pred CChhHHHHHHHHHHCCCEEEEEeCCC-HHHHHHHHHHcCC---CCEEEeCCCccccCCchHH-HHHHHHhC--ccCeeEe
Confidence 67999999999999999999999888 6778899999997 5553 333445554432 23335555 3568999
Q ss_pred eCCcccHHHHHHcCCeEEEECCCCC
Q 032106 81 DDEDRNIDAVSKMGVTGILVGNGVN 105 (147)
Q Consensus 81 gDs~~Di~~a~~~Gi~~i~v~~~~~ 105 (147)
||+.+|+.+++.+| ..+.|+.+..
T Consensus 146 GDS~~Dlp~~~~A~-~av~Vn~~~~ 169 (479)
T PRK08238 146 GNSAADLPVWAAAR-RAIVVGASPG 169 (479)
T ss_pred cCCHHHHHHHHhCC-CeEEECCCHH
Confidence 99999999999999 6677765443
No 108
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=98.91 E-value=2e-09 Score=80.94 Aligned_cols=92 Identities=11% Similarity=-0.031 Sum_probs=62.4
Q ss_pred HHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccc------eecCCCCCcHHHHHHHHHHcCCCCCcE-EEEeCC
Q 032106 11 ILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAK------EIFSSWSHKTDHFQRIHSRTGVPFNSM-LFFDDE 83 (147)
Q Consensus 11 ~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~------~~~~~~kp~~~~~~~~~~~~~~~~~~~-v~VgDs 83 (147)
+...++ +|-...++||.+.......-...++...+|..+ ......||++.+|+.+++++++.+.++ +||||+
T Consensus 137 a~~~l~-~~~~~~i~tN~d~~~~~~~g~~~~~~g~~~~~i~~~~g~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~~IGD~ 215 (236)
T TIGR01460 137 AAYLLA-EGDVPFIAANRDDLVRLGDGRFRPGAGAIAAGIKELSGREPTVVGKPSPAIYRAALNLLQARPERRDVMVGDN 215 (236)
T ss_pred HHHHHh-CCCCeEEEECCCCCCCCCCCcEeecchHHHHHHHHHhCceeeeecCCCHHHHHHHHHHhCCCCccceEEECCC
Confidence 334443 453467778755211100111234444444443 211247999999999999999999887 999999
Q ss_pred c-ccHHHHHHcCCeEEEECCC
Q 032106 84 D-RNIDAVSKMGVTGILVGNG 103 (147)
Q Consensus 84 ~-~Di~~a~~~Gi~~i~v~~~ 103 (147)
. .|+.+|+++|+.+++|.+|
T Consensus 216 ~~~Di~~A~~~G~~~i~v~~G 236 (236)
T TIGR01460 216 LRTDILGAKNAGFDTLLVLTG 236 (236)
T ss_pred cHHHHHHHHHCCCcEEEEecC
Confidence 8 7999999999999999765
No 109
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=98.87 E-value=8.1e-09 Score=74.81 Aligned_cols=95 Identities=18% Similarity=0.286 Sum_probs=75.0
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCccc--c------cccc---------eecCCCCCcHHHHH
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKS--M------FVAK---------EIFSSWSHKTDHFQ 64 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~--~------f~~~---------~~~~~~kp~~~~~~ 64 (147)
|++-||++++...|+++|..++++|++. ..++..+..++||+. . |+.. +....+-.|++.+.
T Consensus 87 ~~lT~Gi~eLv~~L~~~~~~v~liSGGF-~~~i~~Va~~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsdsggKa~~i~ 165 (227)
T KOG1615|consen 87 PTLTPGIRELVSRLHARGTQVYLISGGF-RQLIEPVAEQLGIPKSNIYANELLFDKDGKYLGFDTNEPTSDSGGKAEVIA 165 (227)
T ss_pred CccCCCHHHHHHHHHHcCCeEEEEcCCh-HHHHHHHHHHhCCcHhhhhhheeeeccCCcccccccCCccccCCccHHHHH
Confidence 7899999999999999999999999888 788899999999975 1 2221 12222446788888
Q ss_pred HHHHHcCCCCCcEEEEeCCcccHHHHHHcCCeEEEE
Q 032106 65 RIHSRTGVPFNSMLFFDDEDRNIDAVSKMGVTGILV 100 (147)
Q Consensus 65 ~~~~~~~~~~~~~v~VgDs~~Di~~a~~~Gi~~i~v 100 (147)
.+.+ +.....++||||+.+|+++..- |..+++.
T Consensus 166 ~lrk--~~~~~~~~mvGDGatDlea~~p-a~afi~~ 198 (227)
T KOG1615|consen 166 LLRK--NYNYKTIVMVGDGATDLEAMPP-ADAFIGF 198 (227)
T ss_pred HHHh--CCChheeEEecCCccccccCCc-hhhhhcc
Confidence 8866 7888999999999999997666 5544444
No 110
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=98.84 E-value=4.7e-09 Score=80.48 Aligned_cols=102 Identities=18% Similarity=0.138 Sum_probs=72.6
Q ss_pred chhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccc------eecCCCCCcHHHHHHHHHHcCCCCCcEE
Q 032106 5 YPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAK------EIFSSWSHKTDHFQRIHSRTGVPFNSML 78 (147)
Q Consensus 5 ~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~------~~~~~~kp~~~~~~~~~~~~~~~~~~~v 78 (147)
|+-...++..|++-++ ++++||.+.......-....|-..+...+ +..--.||.+.++..+.++++++|++|+
T Consensus 167 y~KL~kA~~yLqnP~c-lflatn~D~~~p~~~~~~ipG~G~~v~av~~~t~R~P~v~GKP~~~m~~~l~~~~~i~psRt~ 245 (306)
T KOG2882|consen 167 YPKLMKALNYLQNPGC-LFLATNRDATTPPTPGVEIPGAGSFVAAVKFATGRQPIVLGKPSTFMFEYLLEKFNIDPSRTC 245 (306)
T ss_pred HHHHHHHHHHhCCCCc-EEEeccCccccCCCCCeeccCCccHHHHHHHHhcCCCeecCCCCHHHHHHHHHHcCCCcceEE
Confidence 5667778899987776 67899776311000011111211122222 1222289999999999999999999999
Q ss_pred EEeCCcc-cHHHHHHcCCeEEEECCCCChH
Q 032106 79 FFDDEDR-NIDAVSKMGVTGILVGNGVNLG 107 (147)
Q Consensus 79 ~VgDs~~-Di~~a~~~Gi~~i~v~~~~~~~ 107 (147)
||||+.+ ||..++++|++++++..|....
T Consensus 246 mvGDRL~TDIlFG~~~G~~TLLvltGv~~l 275 (306)
T KOG2882|consen 246 MVGDRLDTDILFGKNCGFKTLLVLSGVTTL 275 (306)
T ss_pred EEcccchhhhhHhhccCcceEEEecCcCcH
Confidence 9999988 9999999999999999987643
No 111
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=98.80 E-value=5e-08 Score=73.31 Aligned_cols=104 Identities=18% Similarity=0.361 Sum_probs=83.0
Q ss_pred CCchhHHHHHHHH--HHCCCeEEEEcCCCChHHHHHHHHhcCcccccccc-------e----------------ecCCCC
Q 032106 3 SLYPHAKGILHAL--KDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAK-------E----------------IFSSWS 57 (147)
Q Consensus 3 ~~~pgv~~~L~~L--~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~-------~----------------~~~~~k 57 (147)
.+.||+.++|+.+ +..|+.+.|+|.++ .-.++.+|+..|+..+|+.+ + .++...
T Consensus 71 p~~pgm~~~l~~l~~~~~~~~~~IiSDaN-s~fI~~iL~~~gl~~~f~~I~TNpa~~~~~G~l~v~pyh~h~C~~C~~Nm 149 (234)
T PF06888_consen 71 PIDPGMKELLRFLAKNQRGFDLIIISDAN-SFFIETILEHHGLRDCFSEIFTNPACFDADGRLRVRPYHSHGCSLCPPNM 149 (234)
T ss_pred CCCccHHHHHHHHHhcCCCceEEEEeCCc-HhHHHHHHHhCCCccccceEEeCCceecCCceEEEeCccCCCCCcCCCcc
Confidence 4679999999999 45799999999888 78889999999999887553 0 001124
Q ss_pred CcHHHHHHHHHH---cCCCCCcEEEEeCCcccHHHHHHcCC-eEEEECCCCChH
Q 032106 58 HKTDHFQRIHSR---TGVPFNSMLFFDDEDRNIDAVSKMGV-TGILVGNGVNLG 107 (147)
Q Consensus 58 p~~~~~~~~~~~---~~~~~~~~v~VgDs~~Di~~a~~~Gi-~~i~v~~~~~~~ 107 (147)
.|...++.+++. -|+...+++||||+.+|+.++.+++- ..++...+++..
T Consensus 150 CK~~il~~~~~~~~~~g~~~~rviYiGDG~nD~Cp~~~L~~~D~v~~R~~~~l~ 203 (234)
T PF06888_consen 150 CKGKILERLLQEQAQRGVPYDRVIYIGDGRNDFCPALRLRPRDVVFPRKGYPLH 203 (234)
T ss_pred chHHHHHHHHHHHhhcCCCcceEEEECCCCCCcCcccccCCCCEEecCCCChHH
Confidence 678888888776 47888999999999999999999876 466777777644
No 112
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=98.78 E-value=1.5e-07 Score=64.21 Aligned_cols=97 Identities=12% Similarity=0.164 Sum_probs=79.8
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHHcCCCCCcEEEEeC
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLFFDD 82 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgD 82 (147)
++|+.+.+.|+.|++. +.++|+| +++...+..+++..|+..+- .+.. .++++-..+++.++-+.+-++||||
T Consensus 30 klf~ev~e~iqeL~d~-V~i~IAS-gDr~gsl~~lae~~gi~~~r----v~a~--a~~e~K~~ii~eLkk~~~k~vmVGn 101 (152)
T COG4087 30 KLFSEVSETIQELHDM-VDIYIAS-GDRKGSLVQLAEFVGIPVER----VFAG--ADPEMKAKIIRELKKRYEKVVMVGN 101 (152)
T ss_pred EEcHhhHHHHHHHHHh-heEEEec-CCcchHHHHHHHHcCCceee----eecc--cCHHHHHHHHHHhcCCCcEEEEecC
Confidence 6899999999999999 9999999 55577888889999976431 2222 4688888899999887799999999
Q ss_pred CcccHHHHHHcCCeEEEECCCCChH
Q 032106 83 EDRNIDAVSKMGVTGILVGNGVNLG 107 (147)
Q Consensus 83 s~~Di~~a~~~Gi~~i~v~~~~~~~ 107 (147)
+.+|+.+.+++.+..+-+..+..++
T Consensus 102 GaND~laLr~ADlGI~tiq~e~v~~ 126 (152)
T COG4087 102 GANDILALREADLGICTIQQEGVPE 126 (152)
T ss_pred CcchHHHhhhcccceEEeccCCcch
Confidence 9999999999999888887654443
No 113
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=98.77 E-value=5.8e-08 Score=69.79 Aligned_cols=84 Identities=24% Similarity=0.427 Sum_probs=63.6
Q ss_pred hhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccc-eecC-----------CCC--CcHHHHHHH---HH
Q 032106 6 PHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAK-EIFS-----------SWS--HKTDHFQRI---HS 68 (147)
Q Consensus 6 pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~-~~~~-----------~~k--p~~~~~~~~---~~ 68 (147)
|++.++|+.++++|++++|+|++. ...++.+++.+|+...+-.. +... ... -|...++.+ ..
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~-~~~i~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~K~~~l~~~~~~~~ 170 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSP-DEIIEPIAERLGIDDDNVIGNELFDNGGGIFTGRITGSNCGGKAEALKELYIRDE 170 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEE-HHHHHHHHHHTTSSEGGEEEEEEECTTCCEEEEEEEEEEESHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCCEEEEECCCc-HHHHHHHHHHcCCCceEEEEEeeeecccceeeeeECCCCCCcHHHHHHHHHHHhh
Confidence 555599999999999999999876 78889999999998643211 1110 000 267777777 44
Q ss_pred HcCCCCCcEEEEeCCcccHHHHH
Q 032106 69 RTGVPFNSMLFFDDEDRNIDAVS 91 (147)
Q Consensus 69 ~~~~~~~~~v~VgDs~~Di~~a~ 91 (147)
. +..+..+++|||+.+|+.+++
T Consensus 171 ~-~~~~~~~~~iGDs~~D~~~lr 192 (192)
T PF12710_consen 171 E-DIDPDRVIAIGDSINDLPMLR 192 (192)
T ss_dssp H-THTCCEEEEEESSGGGHHHHH
T ss_pred c-CCCCCeEEEEECCHHHHHHhC
Confidence 4 788899999999999999875
No 114
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=98.77 E-value=4.6e-08 Score=74.26 Aligned_cols=92 Identities=12% Similarity=0.164 Sum_probs=67.0
Q ss_pred chhHHHHHHHHHHCCCeEEEEcCCCCh----HHHHHHHHhcCccc---ccccceecCCCCCcHHHHHHHHHHcCCCCCcE
Q 032106 5 YPHAKGILHALKDKGIDVAVASRSPSP----DIANTFLEKLNIKS---MFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSM 77 (147)
Q Consensus 5 ~pgv~~~L~~L~~~g~~l~i~S~~~~~----~~~~~~l~~~gl~~---~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 77 (147)
++++.+++..++..+..+.++++.... ...+.+.+.+++.. .+..++.....-.|+..++.+++.+|++++++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ei~~~~~~K~~~l~~l~~~~gi~~~e~ 218 (272)
T PRK10530 139 FTQVDSLAQAARQVNAIWKFALTHEDLPQLQHFAKHVEHELGLECEWSWHDQVDIARKGNSKGKRLTQWVEAQGWSMKNV 218 (272)
T ss_pred eEEcccHHHHHhhcCCcEEEEEecCCHHHHHHHHHHHhhhcCceEEEecCceEEEecCCCChHHHHHHHHHHcCCCHHHe
Confidence 456777777777777777777754322 22334445555532 12223566666678999999999999999999
Q ss_pred EEEeCCcccHHHHHHcCCe
Q 032106 78 LFFDDEDRNIDAVSKMGVT 96 (147)
Q Consensus 78 v~VgDs~~Di~~a~~~Gi~ 96 (147)
++|||+.+|+.+++.+|+.
T Consensus 219 i~~GD~~NDi~m~~~ag~~ 237 (272)
T PRK10530 219 VAFGDNFNDISMLEAAGLG 237 (272)
T ss_pred EEeCCChhhHHHHHhcCce
Confidence 9999999999999999974
No 115
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=98.69 E-value=2.7e-07 Score=68.20 Aligned_cols=44 Identities=16% Similarity=0.227 Sum_probs=39.9
Q ss_pred CCCcHHHHHHHHHHcCCCCCcEEEEeCCcccHHHHHHcCCeEEE
Q 032106 56 WSHKTDHFQRIHSRTGVPFNSMLFFDDEDRNIDAVSKMGVTGIL 99 (147)
Q Consensus 56 ~kp~~~~~~~~~~~~~~~~~~~v~VgDs~~Di~~a~~~Gi~~i~ 99 (147)
..+|...+..+++++|++++++++|||+.+|+.+++.+|+.+++
T Consensus 147 ~~~K~~~i~~l~~~~~i~~~~~i~~GD~~NDi~m~~~ag~~vam 190 (225)
T TIGR01482 147 GVNKGVAVKKLKEKLGIKPGETLVCGDSENDIDLFEVPGFGVAV 190 (225)
T ss_pred CCCHHHHHHHHHHHhCCCHHHEEEECCCHhhHHHHHhcCceEEc
Confidence 56788999999999999999999999999999999999997443
No 116
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=98.69 E-value=2.2e-07 Score=80.29 Aligned_cols=86 Identities=15% Similarity=0.169 Sum_probs=66.6
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHHcCCCCCcEEEEeC
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLFFDD 82 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgD 82 (147)
+++||+.++|+.|++.|++++++|+.+ ...++.+.+++|+..++.. .+. .|...++. ++ .+..++||||
T Consensus 568 ~~r~~a~~~i~~L~~~gi~~~llTGd~-~~~a~~ia~~lgi~~~~~~---~p~--~K~~~v~~----l~-~~~~v~mvGD 636 (741)
T PRK11033 568 TLRADARQAISELKALGIKGVMLTGDN-PRAAAAIAGELGIDFRAGL---LPE--DKVKAVTE----LN-QHAPLAMVGD 636 (741)
T ss_pred CCchhHHHHHHHHHHCCCEEEEEcCCC-HHHHHHHHHHcCCCeecCC---CHH--HHHHHHHH----Hh-cCCCEEEEEC
Confidence 578999999999999999999999666 7888999999999744431 111 24444444 33 2368999999
Q ss_pred CcccHHHHHHcCCeEEE
Q 032106 83 EDRNIDAVSKMGVTGIL 99 (147)
Q Consensus 83 s~~Di~~a~~~Gi~~i~ 99 (147)
+.+|..+++.+++...+
T Consensus 637 giNDapAl~~A~vgia~ 653 (741)
T PRK11033 637 GINDAPAMKAASIGIAM 653 (741)
T ss_pred CHHhHHHHHhCCeeEEe
Confidence 99999999999966443
No 117
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=98.66 E-value=1.6e-07 Score=82.49 Aligned_cols=93 Identities=13% Similarity=0.155 Sum_probs=73.8
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccc---------------------eecCCCCCcHH
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAK---------------------EIFSSWSHKTD 61 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~---------------------~~~~~~kp~~~ 61 (147)
.+.||+.++|+.|++.|+++.++|+.+ +..+..+.+.+|+...+... ..+.. ..|+
T Consensus 528 p~r~~~~~~i~~l~~~Gi~v~miTGD~-~~tA~~ia~~~Gi~~~~~~~v~g~~l~~~~~~~l~~~~~~~~Vfar--~~P~ 604 (884)
T TIGR01522 528 PPRPGVKEAVTTLITGGVRIIMITGDS-QETAVSIARRLGMPSKTSQSVSGEKLDAMDDQQLSQIVPKVAVFAR--ASPE 604 (884)
T ss_pred cchhHHHHHHHHHHHCCCeEEEECCCC-HHHHHHHHHHcCCCCCCCceeEhHHhHhCCHHHHHHHhhcCeEEEE--CCHH
Confidence 578999999999999999999999666 88889999999997654321 23333 4555
Q ss_pred HHHHHHHHcCCCCCcEEEEeCCcccHHHHHHcCCeEE
Q 032106 62 HFQRIHSRTGVPFNSMLFFDDEDRNIDAVSKMGVTGI 98 (147)
Q Consensus 62 ~~~~~~~~~~~~~~~~v~VgDs~~Di~~a~~~Gi~~i 98 (147)
.-..+.+.+....+.+.||||+.+|..+.+++++...
T Consensus 605 ~K~~iv~~lq~~g~~v~mvGDGvND~pAl~~AdVGia 641 (884)
T TIGR01522 605 HKMKIVKALQKRGDVVAMTGDGVNDAPALKLADIGVA 641 (884)
T ss_pred HHHHHHHHHHHCCCEEEEECCCcccHHHHHhCCeeEe
Confidence 5566666666666889999999999999999997533
No 118
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=98.65 E-value=4.5e-07 Score=67.28 Aligned_cols=43 Identities=9% Similarity=0.175 Sum_probs=38.5
Q ss_pred CCCcHHHHHHHHHHcCCCCCcEEEEeCCcccHHHHHHcCCeEE
Q 032106 56 WSHKTDHFQRIHSRTGVPFNSMLFFDDEDRNIDAVSKMGVTGI 98 (147)
Q Consensus 56 ~kp~~~~~~~~~~~~~~~~~~~v~VgDs~~Di~~a~~~Gi~~i 98 (147)
...|...+..+++.+|++++++++|||+.+|+.+++.+|+.++
T Consensus 155 ~~~Kg~al~~l~~~~~i~~~~~i~~GD~~NDi~m~~~ag~~va 197 (230)
T PRK01158 155 GVNKGTGLKKLAELMGIDPEEVAAIGDSENDLEMFEVAGFGVA 197 (230)
T ss_pred CCChHHHHHHHHHHhCCCHHHEEEECCchhhHHHHHhcCceEE
Confidence 4457888899999999999999999999999999999999754
No 119
>COG4996 Predicted phosphatase [General function prediction only]
Probab=98.64 E-value=8.1e-07 Score=60.76 Aligned_cols=88 Identities=17% Similarity=0.209 Sum_probs=68.2
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccceecCCCCC-cHHHHHHHHHHcC------CCCC
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFSSWSH-KTDHFQRIHSRTG------VPFN 75 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~~~~~~kp-~~~~~~~~~~~~~------~~~~ 75 (147)
++||.++++|+.++++|+.++.+|=+. +..+-..|+.+++..||+.+ +..+-| |-.++-++++..+ +.|+
T Consensus 41 ~L~~~v~~~l~warnsG~i~~~~sWN~-~~kA~~aLral~~~~yFhy~--ViePhP~K~~ML~~llr~i~~er~~~ikP~ 117 (164)
T COG4996 41 HLFPDVKETLKWARNSGYILGLASWNF-EDKAIKALRALDLLQYFHYI--VIEPHPYKFLMLSQLLREINTERNQKIKPS 117 (164)
T ss_pred EEcHHHHHHHHHHHhCCcEEEEeecCc-hHHHHHHHHHhchhhhEEEE--EecCCChhHHHHHHHHHHHHHhhccccCcc
Confidence 589999999999999999999999443 66667889999999999984 222112 4456666666543 6899
Q ss_pred cEEEEeCCcccHHHHHHc
Q 032106 76 SMLFFDDEDRNIDAVSKM 93 (147)
Q Consensus 76 ~~v~VgDs~~Di~~a~~~ 93 (147)
+++|++|....+......
T Consensus 118 ~Ivy~DDR~iH~~~Iwe~ 135 (164)
T COG4996 118 EIVYLDDRRIHFGNIWEY 135 (164)
T ss_pred eEEEEecccccHHHHHHh
Confidence 999999998877766653
No 120
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=98.64 E-value=4e-07 Score=67.15 Aligned_cols=97 Identities=14% Similarity=0.184 Sum_probs=73.8
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCccccc-----------------------------------
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMF----------------------------------- 47 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f----------------------------------- 47 (147)
.+.|.+.++|+.|++.|++++++|+++ ...++.+++.+++..++
T Consensus 18 ~i~~~~~~~i~~l~~~g~~~~~~TGR~-~~~~~~~~~~l~~~~~~i~~NGa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (215)
T TIGR01487 18 MISERAIEAIRKAEKKGIPVSLVTGNT-VPFARALAVLIGTSGPVVAENGGVIFYNKEDIFLANMEEEWFLDEEKKKRFP 96 (215)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEEcCCc-chhHHHHHHHhCCCCcEEEccCcEEEeCCCcEEEecccchhhHHHhhhhhhh
Confidence 356788888999988999999999777 45556777777765321
Q ss_pred --------------------------------------c--cceecCCCCCcHHHHHHHHHHcCCCCCcEEEEeCCcccH
Q 032106 48 --------------------------------------V--AKEIFSSWSHKTDHFQRIHSRTGVPFNSMLFFDDEDRNI 87 (147)
Q Consensus 48 --------------------------------------~--~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgDs~~Di 87 (147)
. ..+.......|...++.+++.+|++++++++|||+.+|+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ei~~~~~~K~~~i~~l~~~~~i~~~~~i~iGDs~ND~ 176 (215)
T TIGR01487 97 RDRLSNEYPRASLVIMREGKDVDEVREIIKERGLNLVDSGFAIHIMKKGVDKGVGVEKLKELLGIKPEEVAAIGDSENDI 176 (215)
T ss_pred hhhcccccceeEEEEecCCccHHHHHHHHHhCCeEEEecCceEEEecCCCChHHHHHHHHHHhCCCHHHEEEECCCHHHH
Confidence 0 001112245778899999999999999999999999999
Q ss_pred HHHHHcCCeEEEE
Q 032106 88 DAVSKMGVTGILV 100 (147)
Q Consensus 88 ~~a~~~Gi~~i~v 100 (147)
.+++.+|+.+++-
T Consensus 177 ~ml~~ag~~vam~ 189 (215)
T TIGR01487 177 DLFRVVGFKVAVA 189 (215)
T ss_pred HHHHhCCCeEEcC
Confidence 9999999885544
No 121
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=98.63 E-value=2.3e-07 Score=71.05 Aligned_cols=84 Identities=15% Similarity=0.155 Sum_probs=63.7
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCCh--HHHHHHHHhcCccccc-ccceecCCCCCcHHHHHHHHHHcCCCCCcEEE
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSP--DIANTFLEKLNIKSMF-VAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLF 79 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~--~~~~~~l~~~gl~~~f-~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~ 79 (147)
.++||+.++|+.|+++|++++++||+... ......++.+|+..++ +.+..-...++|+..+..+.+.+++ +++
T Consensus 118 ~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~~~d~lllr~~~~~K~~rr~~I~~~y~I----vl~ 193 (266)
T TIGR01533 118 KPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNLKRFGFPQADEEHLLLKKDKSSKESRRQKVQKDYEI----VLL 193 (266)
T ss_pred CcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHcCcCCCCcceEEeCCCCCCcHHHHHHHHhcCCE----EEE
Confidence 57999999999999999999999987622 2234678889997644 3321112346788888888887777 899
Q ss_pred EeCCcccHHHH
Q 032106 80 FDDEDRNIDAV 90 (147)
Q Consensus 80 VgDs~~Di~~a 90 (147)
|||+..|+..+
T Consensus 194 vGD~~~Df~~~ 204 (266)
T TIGR01533 194 FGDNLLDFDDF 204 (266)
T ss_pred ECCCHHHhhhh
Confidence 99999999653
No 122
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=98.41 E-value=2e-06 Score=73.46 Aligned_cols=88 Identities=10% Similarity=0.084 Sum_probs=68.6
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHHcCCCCCcEEEEeC
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLFFDD 82 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgD 82 (147)
.+-||++++++.|++.|+++.++|+.+ ...+..+.+.+|++++|.. . .+..|...++...+ ....+.|+||
T Consensus 446 ~~Rp~a~eaI~~l~~~Gi~v~miTGD~-~~ta~~iA~~lGI~~v~a~--~--~PedK~~~v~~lq~----~g~~VamvGD 516 (675)
T TIGR01497 446 IVKGGIKERFAQLRKMGIKTIMITGDN-RLTAAAIAAEAGVDDFIAE--A--TPEDKIALIRQEQA----EGKLVAMTGD 516 (675)
T ss_pred cchhHHHHHHHHHHHCCCEEEEEcCCC-HHHHHHHHHHcCCCEEEcC--C--CHHHHHHHHHHHHH----cCCeEEEECC
Confidence 467999999999999999999999655 8888999999999876643 1 11234444444433 3356999999
Q ss_pred CcccHHHHHHcCCeEEE
Q 032106 83 EDRNIDAVSKMGVTGIL 99 (147)
Q Consensus 83 s~~Di~~a~~~Gi~~i~ 99 (147)
+.+|..+.+.+++...+
T Consensus 517 G~NDapAL~~AdvGiAm 533 (675)
T TIGR01497 517 GTNDAPALAQADVGVAM 533 (675)
T ss_pred CcchHHHHHhCCEeEEe
Confidence 99999999999988554
No 123
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=98.39 E-value=7.2e-06 Score=60.64 Aligned_cols=47 Identities=17% Similarity=0.352 Sum_probs=41.2
Q ss_pred CCCCcHHHHHHHHHHcCCCCCcEEEEeCCcccHHHHHHcCCeEEEECC
Q 032106 55 SWSHKTDHFQRIHSRTGVPFNSMLFFDDEDRNIDAVSKMGVTGILVGN 102 (147)
Q Consensus 55 ~~kp~~~~~~~~~~~~~~~~~~~v~VgDs~~Di~~a~~~Gi~~i~v~~ 102 (147)
..-.|...++.+++.+|++++++++|||+.+|+.+.+.+|.. +.+..
T Consensus 183 ~~vsK~~ai~~l~~~~~i~~~~~~~~GD~~ND~~Ml~~~~~~-~am~n 229 (254)
T PF08282_consen 183 KGVSKGSAIKYLLEYLGISPEDIIAFGDSENDIEMLELAGYS-VAMGN 229 (254)
T ss_dssp TTSSHHHHHHHHHHHHTTSGGGEEEEESSGGGHHHHHHSSEE-EEETT
T ss_pred CCCCHHHHHHHHhhhcccccceeEEeecccccHhHHhhcCeE-EEEcC
Confidence 367788999999999999999999999999999999999887 44433
No 124
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=98.39 E-value=2.6e-06 Score=72.76 Aligned_cols=88 Identities=10% Similarity=0.117 Sum_probs=70.0
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHHcCCCCCcEEEEeC
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLFFDD 82 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgD 82 (147)
.+-||++++++.|++.|+++.++|+- ++..+..+.+++|++++|.. -.|+-=..+.+.+.-.-.-+.|+||
T Consensus 441 p~R~~a~e~I~~Lr~~GI~vvMiTGD-n~~TA~aIA~elGI~~v~A~--------~~PedK~~iV~~lQ~~G~~VaMtGD 511 (673)
T PRK14010 441 VIKDGLVERFRELREMGIETVMCTGD-NELTAATIAKEAGVDRFVAE--------CKPEDKINVIREEQAKGHIVAMTGD 511 (673)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEECCC-CHHHHHHHHHHcCCceEEcC--------CCHHHHHHHHHHHHhCCCEEEEECC
Confidence 46799999999999999999999954 48999999999999876654 2444444555555444466999999
Q ss_pred CcccHHHHHHcCCeEEE
Q 032106 83 EDRNIDAVSKMGVTGIL 99 (147)
Q Consensus 83 s~~Di~~a~~~Gi~~i~ 99 (147)
+.||..+-+++.+...+
T Consensus 512 GvNDAPALa~ADVGIAM 528 (673)
T PRK14010 512 GTNDAPALAEANVGLAM 528 (673)
T ss_pred ChhhHHHHHhCCEEEEe
Confidence 99999999999987443
No 125
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=98.38 E-value=2.9e-06 Score=72.56 Aligned_cols=88 Identities=11% Similarity=0.155 Sum_probs=69.0
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHHcCCCCCcEEEEeC
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLFFDD 82 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgD 82 (147)
.+-||++++++.|++.|+++.++|+- ++..++.+.+.+|++++|.. -.|+--..+.+.+.-...-+.|+||
T Consensus 445 ~~R~~~~eai~~Lr~~GI~vvMiTGD-n~~TA~aIA~elGId~v~A~--------~~PedK~~iV~~lQ~~G~~VaMtGD 515 (679)
T PRK01122 445 IVKPGIKERFAELRKMGIKTVMITGD-NPLTAAAIAAEAGVDDFLAE--------ATPEDKLALIRQEQAEGRLVAMTGD 515 (679)
T ss_pred cCchhHHHHHHHHHHCCCeEEEECCC-CHHHHHHHHHHcCCcEEEcc--------CCHHHHHHHHHHHHHcCCeEEEECC
Confidence 46799999999999999999999954 48999999999999876543 1344334444444434456999999
Q ss_pred CcccHHHHHHcCCeEEE
Q 032106 83 EDRNIDAVSKMGVTGIL 99 (147)
Q Consensus 83 s~~Di~~a~~~Gi~~i~ 99 (147)
+.||..+-+++++...+
T Consensus 516 GvNDAPALa~ADVGIAM 532 (679)
T PRK01122 516 GTNDAPALAQADVGVAM 532 (679)
T ss_pred CcchHHHHHhCCEeEEe
Confidence 99999999999987544
No 126
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=98.36 E-value=7.1e-07 Score=70.06 Aligned_cols=50 Identities=20% Similarity=0.288 Sum_probs=43.7
Q ss_pred CCCCcHHHHHHHHHHc--------CC-----CCCcEEEEeCCc-ccHHHHHHcCCeEEEECCCC
Q 032106 55 SWSHKTDHFQRIHSRT--------GV-----PFNSMLFFDDED-RNIDAVSKMGVTGILVGNGV 104 (147)
Q Consensus 55 ~~kp~~~~~~~~~~~~--------~~-----~~~~~v~VgDs~-~Di~~a~~~Gi~~i~v~~~~ 104 (147)
..||++.+|+.+++.+ +. ++++++||||++ .||.+|+++||.+++|.+|.
T Consensus 231 ~GKP~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~mIGD~~~tDI~ga~~~G~~silV~tG~ 294 (321)
T TIGR01456 231 LGKPTKLTYDFAEDVLIDWEKRLSGTKPSTSPFHALYMVGDNPASDIIGAQNYGWFSCLVKTGV 294 (321)
T ss_pred cCCCChHHHHHHHHHHHHHHhhhccccccCCChheEEEEcCChhhhhhhHHhCCceEEEecccc
Confidence 3899999999988877 43 457999999998 69999999999999998873
No 127
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=98.36 E-value=2.7e-06 Score=72.96 Aligned_cols=85 Identities=20% Similarity=0.268 Sum_probs=66.6
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHHcCCCCCcEEEEeC
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLFFDD 82 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgD 82 (147)
++-|++.++++.|++.|+++.++| ++++..++.+.+++|+++++-. .. +..|.+.++.+. -....+.||||
T Consensus 537 ~~R~~a~~aI~~L~~~Gi~~~mLT-GDn~~~A~~iA~~lGId~v~Ae--ll--PedK~~~V~~l~----~~g~~VamVGD 607 (713)
T COG2217 537 ELRPDAKEAIAALKALGIKVVMLT-GDNRRTAEAIAKELGIDEVRAE--LL--PEDKAEIVRELQ----AEGRKVAMVGD 607 (713)
T ss_pred CCChhHHHHHHHHHHCCCeEEEEc-CCCHHHHHHHHHHcChHhhecc--CC--cHHHHHHHHHHH----hcCCEEEEEeC
Confidence 467999999999999999999999 4558889999999999877654 21 113444444443 33377999999
Q ss_pred CcccHHHHHHcCCe
Q 032106 83 EDRNIDAVSKMGVT 96 (147)
Q Consensus 83 s~~Di~~a~~~Gi~ 96 (147)
+.||-.+-..+.+.
T Consensus 608 GINDAPALA~AdVG 621 (713)
T COG2217 608 GINDAPALAAADVG 621 (713)
T ss_pred CchhHHHHhhcCee
Confidence 99999988888776
No 128
>PRK11590 hypothetical protein; Provisional
Probab=98.32 E-value=1.3e-05 Score=59.13 Aligned_cols=94 Identities=11% Similarity=0.149 Sum_probs=64.7
Q ss_pred CCchhHHHHH-HHHHHCCCeEEEEcCCCChHHHHHHHHhcCc---ccccccc-e-ecC-----C-CCCcHHHHHHHHHHc
Q 032106 3 SLYPHAKGIL-HALKDKGIDVAVASRSPSPDIANTFLEKLNI---KSMFVAK-E-IFS-----S-WSHKTDHFQRIHSRT 70 (147)
Q Consensus 3 ~~~pgv~~~L-~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl---~~~f~~~-~-~~~-----~-~kp~~~~~~~~~~~~ 70 (147)
.++||+.+.| +.|++.|++++|+||+. ...++.+++.+|+ .+.+-.. + .++ . +... +=...+.+.+
T Consensus 95 ~~~pga~e~L~~~l~~~G~~l~IvSas~-~~~~~~il~~l~~~~~~~~i~t~l~~~~tg~~~g~~c~g~-~K~~~l~~~~ 172 (211)
T PRK11590 95 TAFPVVQERLTTYLLSSDADVWLITGSP-QPLVEQVYFDTPWLPRVNLIASQMQRRYGGWVLTLRCLGH-EKVAQLERKI 172 (211)
T ss_pred cCCccHHHHHHHHHHhCCCEEEEEeCCc-HHHHHHHHHHccccccCceEEEEEEEEEccEECCccCCCh-HHHHHHHHHh
Confidence 4699999999 67888999999999888 6777889999885 3322110 1 111 1 1111 1112333344
Q ss_pred CCCCCcEEEEeCCcccHHHHHHcCCeEE
Q 032106 71 GVPFNSMLFFDDEDRNIDAVSKMGVTGI 98 (147)
Q Consensus 71 ~~~~~~~v~VgDs~~Di~~a~~~Gi~~i 98 (147)
+.+...+.+-|||.+|+.+...+|-..+
T Consensus 173 ~~~~~~~~aY~Ds~~D~pmL~~a~~~~~ 200 (211)
T PRK11590 173 GTPLRLYSGYSDSKQDNPLLYFCQHRWR 200 (211)
T ss_pred CCCcceEEEecCCcccHHHHHhCCCCEE
Confidence 6677888999999999999999888743
No 129
>KOG2630 consensus Enolase-phosphatase E-1 [Amino acid transport and metabolism]
Probab=98.30 E-value=6.1e-06 Score=61.38 Aligned_cols=104 Identities=15% Similarity=0.227 Sum_probs=81.7
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcC---cccccccc-eecCCCCCcHHHHHHHHHHcCCCCCcEE
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLN---IKSMFVAK-EIFSSWSHKTDHFQRIHSRTGVPFNSML 78 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~g---l~~~f~~~-~~~~~~kp~~~~~~~~~~~~~~~~~~~v 78 (147)
..|+++..+++.++..|++++|.|++. ....+.+....+ +..|++.- +..-..|-....|..|.+..|.++.+++
T Consensus 123 ~v~aDv~~a~e~w~~~g~~vyIYSSgs-v~AqKllfg~s~~gdl~~y~~gyfDt~iG~K~e~~sy~~I~~~Ig~s~~eiL 201 (254)
T KOG2630|consen 123 HVYADVLPAIERWSGEGVRVYIYSSGS-VAAQKLLFGYSDAGDLRKYISGYFDTTIGLKVESQSYKKIGHLIGKSPREIL 201 (254)
T ss_pred cccchhHHHHHHHhhcCceEEEEcCCc-HHHHHHHHcccCcchHHHHhhhhhhccccceehhHHHHHHHHHhCCChhheE
Confidence 579999999999999999999999776 555444444332 22232221 1233467888999999999999999999
Q ss_pred EEeCCcccHHHHHHcCCeEEEECCCCChH
Q 032106 79 FFDDEDRNIDAVSKMGVTGILVGNGVNLG 107 (147)
Q Consensus 79 ~VgDs~~Di~~a~~~Gi~~i~v~~~~~~~ 107 (147)
|.-|...-..+|+.+|+.+..+.++.+..
T Consensus 202 fLTd~~~Ea~aa~~aGl~a~l~~rPgna~ 230 (254)
T KOG2630|consen 202 FLTDVPREAAAARKAGLQAGLVSRPGNAP 230 (254)
T ss_pred EeccChHHHHHHHhcccceeeeecCCCCC
Confidence 99999999999999999999998876644
No 130
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=98.30 E-value=9.3e-06 Score=61.94 Aligned_cols=43 Identities=14% Similarity=0.218 Sum_probs=38.1
Q ss_pred CCCcHHHHHHHHHHcCCCCCcEEEEeCCcccHHHHHHcCCeEE
Q 032106 56 WSHKTDHFQRIHSRTGVPFNSMLFFDDEDRNIDAVSKMGVTGI 98 (147)
Q Consensus 56 ~kp~~~~~~~~~~~~~~~~~~~v~VgDs~~Di~~a~~~Gi~~i 98 (147)
.-.|...++.+++.+|+++++++.|||+.||+.+-+.+|..++
T Consensus 186 g~sKg~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vA 228 (272)
T PRK15126 186 GCNKGAALAVLSQHLGLSLADCMAFGDAMNDREMLGSVGRGFI 228 (272)
T ss_pred CCChHHHHHHHHHHhCCCHHHeEEecCCHHHHHHHHHcCCcee
Confidence 4567788889999999999999999999999999999998543
No 131
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=98.28 E-value=1.2e-05 Score=60.92 Aligned_cols=45 Identities=18% Similarity=0.286 Sum_probs=39.2
Q ss_pred CCCcHHHHHHHHHHcCCCCCcEEEEeCCcccHHHHHHcCCeEEEE
Q 032106 56 WSHKTDHFQRIHSRTGVPFNSMLFFDDEDRNIDAVSKMGVTGILV 100 (147)
Q Consensus 56 ~kp~~~~~~~~~~~~~~~~~~~v~VgDs~~Di~~a~~~Gi~~i~v 100 (147)
.-.|....+.+++++|+.+++++.|||+.+|+.+-+.+|..+++-
T Consensus 187 g~~K~~al~~l~~~lgi~~~~v~afGD~~ND~~Ml~~ag~gvam~ 231 (264)
T COG0561 187 GVSKGYALQRLAKLLGIKLEEVIAFGDSTNDIEMLEVAGLGVAMG 231 (264)
T ss_pred CCchHHHHHHHHHHhCCCHHHeEEeCCccccHHHHHhcCeeeecc
Confidence 456777889999999999999999999999999999998875543
No 132
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=98.28 E-value=1.4e-05 Score=60.39 Aligned_cols=49 Identities=18% Similarity=0.302 Sum_probs=41.9
Q ss_pred eecCCCCCcHHHHHHHHHHcCCCCCcEEEEeCCcccHHHHHHcCCeEEE
Q 032106 51 EIFSSWSHKTDHFQRIHSRTGVPFNSMLFFDDEDRNIDAVSKMGVTGIL 99 (147)
Q Consensus 51 ~~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgDs~~Di~~a~~~Gi~~i~ 99 (147)
+.....-.|...++.+++.++++++++++|||+.+|+.+++.+|+.+++
T Consensus 181 eI~~~~~~K~~~i~~~~~~~~~~~~~~~~~GD~~nD~~m~~~~~~~~a~ 229 (256)
T TIGR00099 181 EITAKGVSKGSALQSLAEALGISLEDVIAFGDGMNDIEMLEAAGYGVAM 229 (256)
T ss_pred EecCCCCChHHHHHHHHHHcCCCHHHEEEeCCcHHhHHHHHhCCceeEe
Confidence 3444456788889999999999999999999999999999999987554
No 133
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=98.27 E-value=4.1e-06 Score=62.04 Aligned_cols=103 Identities=15% Similarity=0.272 Sum_probs=76.9
Q ss_pred CCchhHHHHHHHHHHCCC-eEEEEcCCCChHHHHHHHHhcCcccccccc-------ee-----------------cCCCC
Q 032106 3 SLYPHAKGILHALKDKGI-DVAVASRSPSPDIANTFLEKLNIKSMFVAK-------EI-----------------FSSWS 57 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~-~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~-------~~-----------------~~~~k 57 (147)
.+.||+.++++.+++.|. .+.|+|.+| .-.++..++.+|+.++|..+ +. ++...
T Consensus 84 P~~Pgmv~lik~~ak~g~~eliIVSDaN-sfFIe~~Lea~~~~d~F~~IfTNPa~~da~G~L~v~pyH~~hsC~~CPsNm 162 (256)
T KOG3120|consen 84 PIVPGMVRLIKSAAKLGCFELIIVSDAN-SFFIEEILEAAGIHDLFSEIFTNPACVDASGRLLVRPYHTQHSCNLCPSNM 162 (256)
T ss_pred CCCccHHHHHHHHHhCCCceEEEEecCc-hhHHHHHHHHccHHHHHHHHhcCCcccCCCCcEEeecCCCCCccCcCchhh
Confidence 367999999999999985 999999888 67789999999999988764 00 01123
Q ss_pred CcHHHHHHHHH---HcCCCCCcEEEEeCCcccHHHHHHcCC-eEEEECCCCCh
Q 032106 58 HKTDHFQRIHS---RTGVPFNSMLFFDDEDRNIDAVSKMGV-TGILVGNGVNL 106 (147)
Q Consensus 58 p~~~~~~~~~~---~~~~~~~~~v~VgDs~~Di~~a~~~Gi-~~i~v~~~~~~ 106 (147)
.|...+.++.. +-|+..++++||||+.+|+.+.....- .+++...|++.
T Consensus 163 CKg~Vl~~~~~s~~~~gv~yer~iYvGDG~nD~CP~l~Lr~~D~ampRkgfpl 215 (256)
T KOG3120|consen 163 CKGLVLDELVASQLKDGVRYERLIYVGDGANDFCPVLRLRACDVAMPRKGFPL 215 (256)
T ss_pred hhhHHHHHHHHHHhhcCCceeeEEEEcCCCCCcCcchhcccCceecccCCCch
Confidence 34445555444 347888999999999999998888744 55555566653
No 134
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=98.26 E-value=1.1e-05 Score=71.38 Aligned_cols=92 Identities=15% Similarity=0.187 Sum_probs=69.3
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCccc--------ccccc-----------------eecCCCC
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKS--------MFVAK-----------------EIFSSWS 57 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~--------~f~~~-----------------~~~~~~k 57 (147)
.+.|++.++|+.|++.|+++.++|+.+ ...+..+.+.+|+.. .++.. ..+..
T Consensus 537 plr~~v~e~I~~l~~aGI~v~miTGD~-~~tA~~ia~~~gi~~~~~~v~~~~~~g~~l~~~~~~~~~~~~~~~~v~ar-- 613 (917)
T TIGR01116 537 PPRPEVADAIEKCRTAGIRVIMITGDN-KETAEAICRRIGIFSPDEDVTFKSFTGREFDEMGPAKQRAACRSAVLFSR-- 613 (917)
T ss_pred CCchhHHHHHHHHHHCCCEEEEecCCC-HHHHHHHHHHcCCCCCCccccceeeeHHHHhhCCHHHHHHhhhcCeEEEe--
Confidence 578999999999999999999999555 788889999999864 22210 12222
Q ss_pred CcHHHHHHHHHHcCCCCCcEEEEeCCcccHHHHHHcCCeE
Q 032106 58 HKTDHFQRIHSRTGVPFNSMLFFDDEDRNIDAVSKMGVTG 97 (147)
Q Consensus 58 p~~~~~~~~~~~~~~~~~~~v~VgDs~~Di~~a~~~Gi~~ 97 (147)
..|+.-..+++.++-..+.+.|+||+.+|+.+.+.+++..
T Consensus 614 ~~P~~K~~iV~~lq~~g~~va~iGDG~ND~~alk~AdVGi 653 (917)
T TIGR01116 614 VEPSHKSELVELLQEQGEIVAMTGDGVNDAPALKKADIGI 653 (917)
T ss_pred cCHHHHHHHHHHHHhcCCeEEEecCCcchHHHHHhCCeeE
Confidence 2333335555666656678999999999999999999954
No 135
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=98.26 E-value=5.2e-06 Score=64.21 Aligned_cols=79 Identities=18% Similarity=0.142 Sum_probs=59.5
Q ss_pred hhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccc---eecCCCCCc-----------------------
Q 032106 6 PHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAK---EIFSSWSHK----------------------- 59 (147)
Q Consensus 6 pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~---~~~~~~kp~----------------------- 59 (147)
||+.++|+.|+++|++++|+|++. +..+...++.+|+..||+.+ ......||+
T Consensus 149 PgV~EaL~~LkekGikLaIaTS~~-Re~v~~~L~~lGLd~YFdvIIs~Gdv~~~kp~~e~~d~~~~~~~~~~~f~~d~~~ 227 (301)
T TIGR01684 149 PRIYDSLTELKKRGCILVLWSYGD-RDHVVESMRKVKLDRYFDIIISGGHKAEEYSTMSTEDRQYRYVFTKTPFYLNTTD 227 (301)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCC-HHHHHHHHHHcCCCcccCEEEECCccccCCCCccccccccceEEecCCeEEeCCC
Confidence 999999999999999999999888 66668899999999999764 222223333
Q ss_pred -------HHHHHHHHHHcCCCC-CcEEEEeCCcc
Q 032106 60 -------TDHFQRIHSRTGVPF-NSMLFFDDEDR 85 (147)
Q Consensus 60 -------~~~~~~~~~~~~~~~-~~~v~VgDs~~ 85 (147)
|....+.+++.|+.. ..+-.|+|-..
T Consensus 228 ~~~lPKSprvvl~yL~~~gvn~~KtitLVDDl~~ 261 (301)
T TIGR01684 228 GKRLPKSPRVVLWYLYDLGVNYFKSITLVDDLAD 261 (301)
T ss_pred CCcCCCCCeehHHHHHHcCCceeeeEEEeccCcc
Confidence 345566667777765 66667777654
No 136
>PLN02645 phosphoglycolate phosphatase
Probab=98.23 E-value=1.2e-05 Score=62.89 Aligned_cols=91 Identities=14% Similarity=0.156 Sum_probs=65.3
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHH--HHHHHHhcCcccccccceecCCCCCcHHHHHHHHHHcCCCCCcEEEE
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDI--ANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLFF 80 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~--~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~V 80 (147)
.++||+.++|+.|+++|++++++||+..... .-..++.+|+...++. ++.. .......++..+......+||
T Consensus 44 ~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~~~~~~--I~ts----~~~~~~~l~~~~~~~~~~V~v 117 (311)
T PLN02645 44 KLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLNVTEEE--IFSS----SFAAAAYLKSINFPKDKKVYV 117 (311)
T ss_pred ccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCCCChhh--Eeeh----HHHHHHHHHhhccCCCCEEEE
Confidence 5789999999999999999999998773322 1223567888644443 3332 335555556556544556888
Q ss_pred eCCcccHHHHHHcCCeEEE
Q 032106 81 DDEDRNIDAVSKMGVTGIL 99 (147)
Q Consensus 81 gDs~~Di~~a~~~Gi~~i~ 99 (147)
+++..+.+.++.+|+.++.
T Consensus 118 iG~~~~~~~l~~~Gi~~~~ 136 (311)
T PLN02645 118 IGEEGILEELELAGFQYLG 136 (311)
T ss_pred EcCHHHHHHHHHCCCEEec
Confidence 8898899999999997654
No 137
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=98.22 E-value=1e-05 Score=66.17 Aligned_cols=100 Identities=18% Similarity=0.240 Sum_probs=66.4
Q ss_pred chhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhc---------CcccccccceecC--------------------C
Q 032106 5 YPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKL---------NIKSMFVAKEIFS--------------------S 55 (147)
Q Consensus 5 ~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~---------gl~~~f~~~~~~~--------------------~ 55 (147)
-|.++.+|+.|+++|.+++++||++ -..++.++..+ ++.+|||.+-..+ .
T Consensus 185 ~~~l~~~L~~lr~~GKklFLiTNS~-~~yt~~~M~yl~g~~~~~~~dW~dlFDvVIv~A~KP~FF~~~~pfr~vd~~~g~ 263 (448)
T PF05761_consen 185 DPKLPPWLERLRSAGKKLFLITNSP-FDYTNAVMSYLLGPFLGEDPDWRDLFDVVIVDARKPGFFTEGRPFREVDTETGK 263 (448)
T ss_dssp -CHHHHHHHHHHCCT-EEEEE-SS--HHHHHHHHHHHCGCCSSTTT-GGGCECEEEES--CCHHHCT---EEEEETTTSS
T ss_pred CchHHHHHHHHHhcCceEEEecCCC-CchhhhhhhhccCCCCCCCCChhhheeEEEEcCCCCcccCCCCceEEEECCCCc
Confidence 3688999999999999999999988 77778877753 3556787641000 0
Q ss_pred ---C------CC----cHHHHHHHHHHcCCCCCcEEEEeCCcc-cHHHHHHc-CCeEEEECCCCC
Q 032106 56 ---W------SH----KTDHFQRIHSRTGVPFNSMLFFDDEDR-NIDAVSKM-GVTGILVGNGVN 105 (147)
Q Consensus 56 ---~------kp----~~~~~~~~~~~~~~~~~~~v~VgDs~~-Di~~a~~~-Gi~~i~v~~~~~ 105 (147)
. ++ .......+.+-+|....+++||||+.. ||..+++. ||+|++|-....
T Consensus 264 l~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~g~~VLY~GDhi~~Di~~~k~~~gWrT~~Ii~ELe 328 (448)
T PF05761_consen 264 LKWGKYVGPLEKGKVYSGGNWDQLHKLLGWRGKEVLYFGDHIYGDILKSKKRHGWRTAAIIPELE 328 (448)
T ss_dssp EECS---SS--TC-EEEE--HHHHHHHCT--GGGEEEEESSTTTTHHHHHHHH-SEEEEE-TTHH
T ss_pred cccccccccccCCCEeecCCHHHHHHHHccCCCeEEEECCchhhhhhhhccccceEEEEEehhhh
Confidence 0 00 112446677778998999999999988 98888776 999999976543
No 138
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=98.22 E-value=8.1e-06 Score=60.32 Aligned_cols=65 Identities=12% Similarity=0.139 Sum_probs=50.8
Q ss_pred HHHHHHHHhcCcc----cccccceecCCCCCcHHHHHHHHHHcCCCCCcEEEEeCCcccHHHHHHcCCeEE
Q 032106 32 DIANTFLEKLNIK----SMFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLFFDDEDRNIDAVSKMGVTGI 98 (147)
Q Consensus 32 ~~~~~~l~~~gl~----~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgDs~~Di~~a~~~Gi~~i 98 (147)
..+...+...++. .+|. +..+..-.|...+..+++.+|++++++++|||+.+|+.+.+.+|..++
T Consensus 151 ~~~~~~l~~~~~~~~~~~~~~--ei~~~~~~Kg~al~~l~~~lgi~~~~vi~~GD~~NDi~ml~~ag~~va 219 (221)
T TIGR02463 151 PRFTALLADLGLAIVQGNRFS--HVLGASSSKGKAANWLKATYNQPDVKTLGLGDGPNDLPLLEVADYAVV 219 (221)
T ss_pred HHHHHHHHHcCCeEEecCCee--EEecCCCCHHHHHHHHHHHhCCCCCcEEEECCCHHHHHHHHhCCceEE
Confidence 3344556666664 3332 455555668889999999999999999999999999999999998754
No 139
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=98.19 E-value=3.6e-05 Score=57.01 Aligned_cols=94 Identities=12% Similarity=0.120 Sum_probs=63.1
Q ss_pred CCchhHHHHHH-HHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccc----ee-c-CC-----CCCcHHHHHHHHHHc
Q 032106 3 SLYPHAKGILH-ALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAK----EI-F-SS-----WSHKTDHFQRIHSRT 70 (147)
Q Consensus 3 ~~~pgv~~~L~-~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~----~~-~-~~-----~kp~~~~~~~~~~~~ 70 (147)
.++||+.++|+ +++++|++++|+||+. ...++.+++..++..-.+.+ +. . +. +... +=...+.+.+
T Consensus 94 ~l~pga~e~L~~~l~~~G~~v~IvSas~-~~~~~~ia~~~~~~~~~~~i~t~le~~~gg~~~g~~c~g~-~Kv~rl~~~~ 171 (210)
T TIGR01545 94 TAFPLVAERLRQYLESSDADIWLITGSP-QPLVEAVYFDSNFIHRLNLIASQIERGNGGWVLPLRCLGH-EKVAQLEQKI 171 (210)
T ss_pred CCCccHHHHHHHHHHhCCCEEEEEcCCc-HHHHHHHHHhccccccCcEEEEEeEEeCCceEcCccCCCh-HHHHHHHHHh
Confidence 47999999995 8898999999999888 67778888775552211111 11 1 10 1111 1112233334
Q ss_pred CCCCCcEEEEeCCcccHHHHHHcCCeEE
Q 032106 71 GVPFNSMLFFDDEDRNIDAVSKMGVTGI 98 (147)
Q Consensus 71 ~~~~~~~v~VgDs~~Di~~a~~~Gi~~i 98 (147)
+.+...+.+-|||.+|+.+...+|-..+
T Consensus 172 ~~~~~~~~aYsDS~~D~pmL~~a~~~~~ 199 (210)
T TIGR01545 172 GSPLKLYSGYSDSKQDNPLLAFCEHRWR 199 (210)
T ss_pred CCChhheEEecCCcccHHHHHhCCCcEE
Confidence 5566778999999999999999988743
No 140
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.17 E-value=1.1e-05 Score=61.73 Aligned_cols=65 Identities=11% Similarity=0.193 Sum_probs=50.8
Q ss_pred HHHHHHhcCcc----cccccceecCCCCCcHHHHHHHHHHcCCCC-CcEEEEeCCcccHHHHHHcCCeEEEEC
Q 032106 34 ANTFLEKLNIK----SMFVAKEIFSSWSHKTDHFQRIHSRTGVPF-NSMLFFDDEDRNIDAVSKMGVTGILVG 101 (147)
Q Consensus 34 ~~~~l~~~gl~----~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~-~~~v~VgDs~~Di~~a~~~Gi~~i~v~ 101 (147)
+...++..++. .+|. +..+.. .|...++++++.+|+++ +++++|||+.+|+.+++.+|+.+++-.
T Consensus 165 ~~~~l~~~~~~~~~~~~~~--ei~~~~-~Kg~al~~l~~~~~i~~~~~v~~~GDs~NDi~m~~~ag~~vam~N 234 (273)
T PRK00192 165 FEEALKRLGLKVTRGGRFL--HLLGGG-DKGKAVRWLKELYRRQDGVETIALGDSPNDLPMLEAADIAVVVPG 234 (273)
T ss_pred HHHHHHHcCCEEEECCeEE--EEeCCC-CHHHHHHHHHHHHhccCCceEEEEcCChhhHHHHHhCCeeEEeCC
Confidence 34445555554 2222 466666 88999999999999999 999999999999999999998866554
No 141
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=98.10 E-value=2.7e-05 Score=67.68 Aligned_cols=94 Identities=15% Similarity=0.118 Sum_probs=69.2
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccc-ccc-----------------------ceecCCCCC
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSM-FVA-----------------------KEIFSSWSH 58 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~-f~~-----------------------~~~~~~~kp 58 (147)
.+.|+++++++.|++.|+++.++|+-+ +..+..+.+++|+.+. +.. ...+.. -
T Consensus 442 p~R~~a~~aI~~l~~aGI~v~miTGD~-~~tA~~IA~~lGI~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vfAr--~ 518 (755)
T TIGR01647 442 PPRHDTKETIERARHLGVEVKMVTGDH-LAIAKETARRLGLGTNIYTADVLLKGDNRDDLPSGELGEMVEDADGFAE--V 518 (755)
T ss_pred CChhhHHHHHHHHHHCCCeEEEECCCC-HHHHHHHHHHcCCCCCCcCHHHhcCCcchhhCCHHHHHHHHHhCCEEEe--c
Confidence 577999999999999999999999555 8889999999999641 100 012222 2
Q ss_pred cHHHHHHHHHHcCCCCCcEEEEeCCcccHHHHHHcCCeEEE
Q 032106 59 KTDHFQRIHSRTGVPFNSMLFFDDEDRNIDAVSKMGVTGIL 99 (147)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~v~VgDs~~Di~~a~~~Gi~~i~ 99 (147)
.|+-=..+.+.+.-...-+.|+||+.||..+-+.+.+...+
T Consensus 519 ~Pe~K~~iV~~lq~~G~~VamvGDGvNDapAL~~AdVGIAm 559 (755)
T TIGR01647 519 FPEHKYEIVEILQKRGHLVGMTGDGVNDAPALKKADVGIAV 559 (755)
T ss_pred CHHHHHHHHHHHHhcCCEEEEEcCCcccHHHHHhCCeeEEe
Confidence 33334444455544557799999999999999999988443
No 142
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=98.10 E-value=2.7e-05 Score=68.56 Aligned_cols=94 Identities=18% Similarity=0.188 Sum_probs=67.5
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCccc--cccc-----------------ceecCCCCCcHHHH
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKS--MFVA-----------------KEIFSSWSHKTDHF 63 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~--~f~~-----------------~~~~~~~kp~~~~~ 63 (147)
.+.|+++++++.|++.|+++.++|+- ++..+..+.+++|+.. .... ...+.. -.|+-=
T Consensus 515 p~R~~~~~aI~~l~~aGI~vvmiTGD-~~~tA~aIA~~lGI~~~~v~~g~~l~~~~~~el~~~~~~~~vfAr--~~Pe~K 591 (867)
T TIGR01524 515 PPKESTKEAIAALFKNGINVKVLTGD-NEIVTARICQEVGIDANDFLLGADIEELSDEELARELRKYHIFAR--LTPMQK 591 (867)
T ss_pred CCchhHHHHHHHHHHCCCEEEEEcCC-CHHHHHHHHHHcCCCCCCeeecHhhhhCCHHHHHHHhhhCeEEEE--CCHHHH
Confidence 46799999999999999999999954 4888899999999962 1100 022222 233333
Q ss_pred HHHHHHcCCCCCcEEEEeCCcccHHHHHHcCCeEEE
Q 032106 64 QRIHSRTGVPFNSMLFFDDEDRNIDAVSKMGVTGIL 99 (147)
Q Consensus 64 ~~~~~~~~~~~~~~v~VgDs~~Di~~a~~~Gi~~i~ 99 (147)
..+.+.+.-.-..+.|+||+.||..+.+.+++...+
T Consensus 592 ~~iV~~lq~~G~vVam~GDGvNDapALk~AdVGIAm 627 (867)
T TIGR01524 592 SRIIGLLKKAGHTVGFLGDGINDAPALRKADVGISV 627 (867)
T ss_pred HHHHHHHHhCCCEEEEECCCcccHHHHHhCCEEEEe
Confidence 333343333346799999999999999999998554
No 143
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=98.09 E-value=2.5e-05 Score=51.35 Aligned_cols=85 Identities=19% Similarity=0.180 Sum_probs=52.4
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChH--HHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHHcCCCCCcEEEE
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPD--IANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLFF 80 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~--~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~V 80 (147)
+++||+.++|+.|+++|++++++||+.... .....++.+|+. ++..+.+.. .......+++. .....++++
T Consensus 14 ~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~--~~~~~i~ts----~~~~~~~l~~~-~~~~~v~vl 86 (101)
T PF13344_consen 14 EPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIP--VDEDEIITS----GMAAAEYLKEH-KGGKKVYVL 86 (101)
T ss_dssp EE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT----GGGEEEH----HHHHHHHHHHH-TTSSEEEEE
T ss_pred CcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcC--CCcCEEECh----HHHHHHHHHhc-CCCCEEEEE
Confidence 579999999999999999999999886433 334456888887 333234333 33334444442 234778888
Q ss_pred eCCcccHHHHHHcCC
Q 032106 81 DDEDRNIDAVSKMGV 95 (147)
Q Consensus 81 gDs~~Di~~a~~~Gi 95 (147)
|-. ...+..+.+|+
T Consensus 87 G~~-~l~~~l~~~G~ 100 (101)
T PF13344_consen 87 GSD-GLREELREAGF 100 (101)
T ss_dssp S-H-HHHHHHHHTTE
T ss_pred cCH-HHHHHHHHcCC
Confidence 865 44555666664
No 144
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=98.06 E-value=3e-05 Score=68.53 Aligned_cols=94 Identities=16% Similarity=0.190 Sum_probs=68.8
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCccc--ccc--------c---------ceecCCCCCcHHHH
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKS--MFV--------A---------KEIFSSWSHKTDHF 63 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~--~f~--------~---------~~~~~~~kp~~~~~ 63 (147)
.+-|++.++++.|++.|+++.++| ++++..+..+.+++|+.. .+. . ...+.. -.|+.=
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miT-GD~~~tA~~IA~~lGI~~~~v~~G~el~~l~~~el~~~~~~~~VfAr--~sPe~K 626 (902)
T PRK10517 550 PPKETTAPALKALKASGVTVKILT-GDSELVAAKVCHEVGLDAGEVLIGSDIETLSDDELANLAERTTLFAR--LTPMHK 626 (902)
T ss_pred cchhhHHHHHHHHHHCCCEEEEEc-CCCHHHHHHHHHHcCCCccCceeHHHHHhCCHHHHHHHHhhCcEEEE--cCHHHH
Confidence 467999999999999999999999 444888999999999962 110 0 022222 234444
Q ss_pred HHHHHHcCCCCCcEEEEeCCcccHHHHHHcCCeEEE
Q 032106 64 QRIHSRTGVPFNSMLFFDDEDRNIDAVSKMGVTGIL 99 (147)
Q Consensus 64 ~~~~~~~~~~~~~~v~VgDs~~Di~~a~~~Gi~~i~ 99 (147)
..+.+.+.-...-+.|+||+.||..+-+++.+...+
T Consensus 627 ~~IV~~Lq~~G~vVam~GDGvNDaPALk~ADVGIAm 662 (902)
T PRK10517 627 ERIVTLLKREGHVVGFMGDGINDAPALRAADIGISV 662 (902)
T ss_pred HHHHHHHHHCCCEEEEECCCcchHHHHHhCCEEEEe
Confidence 445554444456799999999999999999987544
No 145
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=98.05 E-value=3.1e-05 Score=68.49 Aligned_cols=97 Identities=15% Similarity=0.233 Sum_probs=69.7
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCccc--cccc-----------------ceecCCCCCcHHHH
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKS--MFVA-----------------KEIFSSWSHKTDHF 63 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~--~f~~-----------------~~~~~~~kp~~~~~ 63 (147)
.+.|+++++++.|++.|+++.++| ++++..+..+.+.+|+.. .... ...+.. -.|+.=
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miT-GD~~~tA~aIA~~lGI~~~~vi~G~el~~~~~~el~~~v~~~~VfAr--~sPe~K 626 (903)
T PRK15122 550 PPKESAAPAIAALRENGVAVKVLT-GDNPIVTAKICREVGLEPGEPLLGTEIEAMDDAALAREVEERTVFAK--LTPLQK 626 (903)
T ss_pred ccHHHHHHHHHHHHHCCCeEEEEC-CCCHHHHHHHHHHcCCCCCCccchHhhhhCCHHHHHHHhhhCCEEEE--eCHHHH
Confidence 467999999999999999999999 444888999999999962 0000 012222 234444
Q ss_pred HHHHHHcCCCCCcEEEEeCCcccHHHHHHcCCeEEEECCC
Q 032106 64 QRIHSRTGVPFNSMLFFDDEDRNIDAVSKMGVTGILVGNG 103 (147)
Q Consensus 64 ~~~~~~~~~~~~~~v~VgDs~~Di~~a~~~Gi~~i~v~~~ 103 (147)
..+.+.+.-.-+-+.|+||+.||..+-+++.+.. .++.|
T Consensus 627 ~~iV~~Lq~~G~vVamtGDGvNDaPALk~ADVGI-Amg~g 665 (903)
T PRK15122 627 SRVLKALQANGHTVGFLGDGINDAPALRDADVGI-SVDSG 665 (903)
T ss_pred HHHHHHHHhCCCEEEEECCCchhHHHHHhCCEEE-EeCcc
Confidence 4444444444567999999999999999999874 34443
No 146
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=98.03 E-value=3.2e-05 Score=59.93 Aligned_cols=80 Identities=15% Similarity=0.170 Sum_probs=62.2
Q ss_pred chhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccceecC------------------------------
Q 032106 5 YPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFS------------------------------ 54 (147)
Q Consensus 5 ~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~~~~------------------------------ 54 (147)
-|++.++|+.|+++|++++|+||+. +..+...++.+|+..+|+.+...+
T Consensus 150 dp~V~EtL~eLkekGikLaIvTNg~-Re~v~~~Le~lgL~~yFDvII~~g~i~~k~~~~~~~d~~~~~~~~~~~f~~d~~ 228 (303)
T PHA03398 150 DPFVYDSLDELKERGCVLVLWSYGN-REHVVHSLKETKLEGYFDIIICGGRKAGEYSRRVIVDNKYKMVFVKKPFYLDVT 228 (303)
T ss_pred ChhHHHHHHHHHHCCCEEEEEcCCC-hHHHHHHHHHcCCCccccEEEECCCcccccccceeecccceeEEecCceeEeCC
Confidence 3999999999999999999999887 566789999999999997531000
Q ss_pred ---CCCCcHHHHHHHHHHcCCCC-CcEEEEeCCcc
Q 032106 55 ---SWSHKTDHFQRIHSRTGVPF-NSMLFFDDEDR 85 (147)
Q Consensus 55 ---~~kp~~~~~~~~~~~~~~~~-~~~v~VgDs~~ 85 (147)
.--.+|....+.+++.|+.. ..+-.|+|-..
T Consensus 229 ~~~~lPKSprvVl~yL~~~gvn~~KtiTLVDDl~~ 263 (303)
T PHA03398 229 DVKNLPKSPRVVLWYLRKKGVNYFKTITLVDDLKS 263 (303)
T ss_pred cccCCCCCCeehHHHHHHcCcceeccEEEeccCcc
Confidence 01124667778888899876 77888888765
No 147
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=97.98 E-value=1.7e-05 Score=56.12 Aligned_cols=77 Identities=13% Similarity=0.132 Sum_probs=56.5
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCccc-cc-ccc---eecCCCCCcHHHHHHHHHHcCCCCCcE
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKS-MF-VAK---EIFSSWSHKTDHFQRIHSRTGVPFNSM 77 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~-~f-~~~---~~~~~~kp~~~~~~~~~~~~~~~~~~~ 77 (147)
.++||+.++|+.|.+. +.++|+|++. +..+..+++.++... +| +.+ +.+.. ...+.+-.-++.+.+.+
T Consensus 58 ~~rPgv~efL~~l~~~-yel~I~T~~~-~~yA~~vl~~ldp~~~~F~~ri~~rd~~~~-----~~~KdL~~i~~~d~~~v 130 (156)
T TIGR02250 58 KLRPFLHEFLKEASKL-YEMHVYTMGT-RAYAQAIAKLIDPDGKYFGDRIISRDESGS-----PHTKSLLRLFPADESMV 130 (156)
T ss_pred EECCCHHHHHHHHHhh-cEEEEEeCCc-HHHHHHHHHHhCcCCCeeccEEEEeccCCC-----CccccHHHHcCCCcccE
Confidence 3689999999999866 9999999888 788899999999884 78 432 22111 11122223357788999
Q ss_pred EEEeCCccc
Q 032106 78 LFFDDEDRN 86 (147)
Q Consensus 78 v~VgDs~~D 86 (147)
++|||++.-
T Consensus 131 vivDd~~~~ 139 (156)
T TIGR02250 131 VIIDDREDV 139 (156)
T ss_pred EEEeCCHHH
Confidence 999999853
No 148
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=97.97 E-value=5.8e-05 Score=56.95 Aligned_cols=53 Identities=21% Similarity=0.299 Sum_probs=47.6
Q ss_pred eecCCCCCcHHHHHHHHHHcCCCCCcEEEEeCCcccHHHHHHcCCeEEEECCC
Q 032106 51 EIFSSWSHKTDHFQRIHSRTGVPFNSMLFFDDEDRNIDAVSKMGVTGILVGNG 103 (147)
Q Consensus 51 ~~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgDs~~Di~~a~~~Gi~~i~v~~~ 103 (147)
+..+...+|...++.+++.+|++++++++|||+.+|+.+++.++..++++...
T Consensus 160 di~~~~~~K~~al~~l~~~~~i~~~~~i~~GD~~ND~~ml~~~~~~~va~~na 212 (249)
T TIGR01485 160 DILPQGSGKGQALQYLLQKLAMEPSQTLVCGDSGNDIELFEIGSVRGVIVSNA 212 (249)
T ss_pred EEEeCCCChHHHHHHHHHHcCCCccCEEEEECChhHHHHHHccCCcEEEECCC
Confidence 56677889999999999999999999999999999999999977777888664
No 149
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=97.94 E-value=4e-05 Score=55.42 Aligned_cols=87 Identities=15% Similarity=0.187 Sum_probs=63.7
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcC----ccc--------ccccc----------eecCCCCCcH
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLN----IKS--------MFVAK----------EIFSSWSHKT 60 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~g----l~~--------~f~~~----------~~~~~~kp~~ 60 (147)
.+-||.+++++.++++++++.|+|++- ...+..+++.++ +.. +++.- ..++..|+
T Consensus 73 ~Idp~fKef~e~ike~di~fiVvSsGm-~~fI~~lfe~ivgke~i~~idi~sn~~~ih~dg~h~i~~~~ds~fG~dK~-- 149 (220)
T COG4359 73 KIDPGFKEFVEWIKEHDIPFIVVSSGM-DPFIYPLFEGIVGKERIYCIDIVSNNDYIHIDGQHSIKYTDDSQFGHDKS-- 149 (220)
T ss_pred ccCccHHHHHHHHHHcCCCEEEEeCCC-chHHHHHHHhhccccceeeeEEeecCceEcCCCceeeecCCccccCCCcc--
Confidence 467999999999999999999999776 667789998876 211 11110 23344333
Q ss_pred HHHHHHHHHcCCCCCcEEEEeCCcccHHHHHHcCCe
Q 032106 61 DHFQRIHSRTGVPFNSMLFFDDEDRNIDAVSKMGVT 96 (147)
Q Consensus 61 ~~~~~~~~~~~~~~~~~v~VgDs~~Di~~a~~~Gi~ 96 (147)
..++.|.-.++.++|.||+..|+.+|+.....
T Consensus 150 ----~vI~~l~e~~e~~fy~GDsvsDlsaaklsDll 181 (220)
T COG4359 150 ----SVIHELSEPNESIFYCGDSVSDLSAAKLSDLL 181 (220)
T ss_pred ----hhHHHhhcCCceEEEecCCcccccHhhhhhhH
Confidence 24456666778899999999999999987654
No 150
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=97.94 E-value=6.5e-05 Score=66.75 Aligned_cols=93 Identities=13% Similarity=0.051 Sum_probs=67.0
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCccc----cc-----c------------cceecCCCCCcHH
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKS----MF-----V------------AKEIFSSWSHKTD 61 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~----~f-----~------------~~~~~~~~kp~~~ 61 (147)
.+.|+++++++.|++.|+++.++|+-+ +..+..+.+.+|+.. .+ + ....+... .|+
T Consensus 579 plr~~~~~aI~~l~~aGI~v~miTGD~-~~tA~~iA~~~GI~~~~~~vi~G~~~~~l~~~el~~~i~~~~Vfar~--sPe 655 (941)
T TIGR01517 579 PLRPGVREAVQECQRAGITVRMVTGDN-IDTAKAIARNCGILTFGGLAMEGKEFRRLVYEEMDPILPKLRVLARS--SPL 655 (941)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCC-hHHHHHHHHHcCCCCCCceEeeHHHhhhCCHHHHHHHhccCeEEEEC--CHH
Confidence 577999999999999999999999554 888999999999962 11 0 01233332 333
Q ss_pred HHHHHHHHcCCCCCcEEEEeCCcccHHHHHHcCCeEE
Q 032106 62 HFQRIHSRTGVPFNSMLFFDDEDRNIDAVSKMGVTGI 98 (147)
Q Consensus 62 ~~~~~~~~~~~~~~~~v~VgDs~~Di~~a~~~Gi~~i 98 (147)
-=..+.+.+.-.-.-+.|+||+.||..+-+++.+...
T Consensus 656 ~K~~iV~~lq~~g~vVam~GDGvNDapALk~AdVGIA 692 (941)
T TIGR01517 656 DKQLLVLMLKDMGEVVAVTGDGTNDAPALKLADVGFS 692 (941)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCchHHHHHhCCccee
Confidence 3333444443334579999999999999999988754
No 151
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=97.73 E-value=0.00027 Score=63.53 Aligned_cols=93 Identities=10% Similarity=0.065 Sum_probs=67.2
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccc--c------------cc-----------------ce
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSM--F------------VA-----------------KE 51 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~--f------------~~-----------------~~ 51 (147)
.+.|+++++++.|++.|+++.++|+-+ +..+..+.+++|+..- . +. ..
T Consensus 646 p~r~~v~~aI~~l~~aGIkv~MiTGD~-~~tA~~iA~~~Gi~~~~~~~~~~~~~~~~vitG~~l~~l~~~~l~~~~~~~~ 724 (1053)
T TIGR01523 646 PPRNESAGAVEKCHQAGINVHMLTGDF-PETAKAIAQEVGIIPPNFIHDRDEIMDSMVMTGSQFDALSDEEVDDLKALCL 724 (1053)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCC-HHHHHHHHHHcCCCCccccccccccccceeeehHHhhhcCHHHHHHHhhcCe
Confidence 468999999999999999999999555 8888999999999531 0 00 01
Q ss_pred ecCCCCCcHHHHHHHHHHcCCCCCcEEEEeCCcccHHHHHHcCCeEE
Q 032106 52 IFSSWSHKTDHFQRIHSRTGVPFNSMLFFDDEDRNIDAVSKMGVTGI 98 (147)
Q Consensus 52 ~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgDs~~Di~~a~~~Gi~~i 98 (147)
.+.. -.|+.=..+.+.+.-...-+.|+||+.+|..+-+.+++...
T Consensus 725 V~ar--~sP~~K~~iV~~lq~~g~~Vam~GDGvNDapaLk~AdVGIA 769 (1053)
T TIGR01523 725 VIAR--CAPQTKVKMIEALHRRKAFCAMTGDGVNDSPSLKMANVGIA 769 (1053)
T ss_pred EEEe--cCHHHHHHHHHHHHhcCCeeEEeCCCcchHHHHHhCCccEe
Confidence 1222 23333334444444344679999999999999999988755
No 152
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=97.68 E-value=6.2e-05 Score=56.27 Aligned_cols=48 Identities=13% Similarity=0.275 Sum_probs=43.3
Q ss_pred eecCCCCCcHHHHHHHHHHcCCCCCcEEEEeCCcccHHHHHHcCCeEE
Q 032106 51 EIFSSWSHKTDHFQRIHSRTGVPFNSMLFFDDEDRNIDAVSKMGVTGI 98 (147)
Q Consensus 51 ~~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgDs~~Di~~a~~~Gi~~i 98 (147)
+..+...+|...++.+++++|++++++++|||+.+|+.+.+.+|....
T Consensus 152 ei~~~~~~K~~al~~l~~~~g~~~~~~i~~GD~~nD~~ml~~~~~~ia 199 (236)
T TIGR02471 152 DVLPLRASKGLALRYLSYRWGLPLEQILVAGDSGNDEEMLRGLTLGVV 199 (236)
T ss_pred EEeeCCCChHHHHHHHHHHhCCCHHHEEEEcCCccHHHHHcCCCcEEE
Confidence 566678899999999999999999999999999999999999887654
No 153
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.67 E-value=0.00026 Score=61.69 Aligned_cols=85 Identities=16% Similarity=0.279 Sum_probs=64.8
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHHcCCCCCcEEEEeC
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLFFDD 82 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgD 82 (147)
++-|++..++..|++.|++++++|+-+ ...++.+.+++|++..+.. .. +..|.+.++++.+. ...+.||||
T Consensus 723 ~vr~~a~~av~~Lk~~Gi~v~mLTGDn-~~aA~svA~~VGi~~V~ae--v~--P~~K~~~Ik~lq~~----~~~VaMVGD 793 (951)
T KOG0207|consen 723 QVRPDAALAVAELKSMGIKVVMLTGDN-DAAARSVAQQVGIDNVYAE--VL--PEQKAEKIKEIQKN----GGPVAMVGD 793 (951)
T ss_pred ccchhHHHHHHHHHhcCceEEEEcCCC-HHHHHHHHHhhCcceEEec--cC--chhhHHHHHHHHhc----CCcEEEEeC
Confidence 467999999999999999999999555 8888999999996654432 22 22455566666543 366999999
Q ss_pred CcccHHHHHHcCCe
Q 032106 83 EDRNIDAVSKMGVT 96 (147)
Q Consensus 83 s~~Di~~a~~~Gi~ 96 (147)
+.||-.+-..+.+.
T Consensus 794 GINDaPALA~AdVG 807 (951)
T KOG0207|consen 794 GINDAPALAQADVG 807 (951)
T ss_pred CCCccHHHHhhccc
Confidence 99998777776664
No 154
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=97.66 E-value=6.2e-05 Score=54.85 Aligned_cols=45 Identities=13% Similarity=0.147 Sum_probs=41.4
Q ss_pred CCCCCcHHHHHHHHHHcCCCCCcEEEEeCCcccHHHHHHcCCeEE
Q 032106 54 SSWSHKTDHFQRIHSRTGVPFNSMLFFDDEDRNIDAVSKMGVTGI 98 (147)
Q Consensus 54 ~~~kp~~~~~~~~~~~~~~~~~~~v~VgDs~~Di~~a~~~Gi~~i 98 (147)
+...+|+..++.++++++++++++++|||+.+|+.+++.+|+..+
T Consensus 159 p~~~~K~~~~~~~~~~~~~~~~~~~~~GD~~nD~~~~~~~~~~va 203 (204)
T TIGR01484 159 PAGVDKGSALQALLKELNGKRDEILAFGDSGNDEEMFEVAGLAVA 203 (204)
T ss_pred cCCCChHHHHHHHHHHhCCCHHHEEEEcCCHHHHHHHHHcCCceE
Confidence 347899999999999999999999999999999999999998754
No 155
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=97.62 E-value=0.00069 Score=51.62 Aligned_cols=96 Identities=22% Similarity=0.357 Sum_probs=73.6
Q ss_pred chhHHHHHHHHHHCCCeEEEEcCCCChHHHHH---HHHhcCccccccc--------------------------ceecCC
Q 032106 5 YPHAKGILHALKDKGIDVAVASRSPSPDIANT---FLEKLNIKSMFVA--------------------------KEIFSS 55 (147)
Q Consensus 5 ~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~---~l~~~gl~~~f~~--------------------------~~~~~~ 55 (147)
-+.++++|+.|+++|+++..+|... +..... -|+.+|++ |+. +-.+..
T Consensus 83 e~~~~~~i~~lq~~~~~v~alT~~~-~~~~~~t~~~Lk~~gi~--fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIlft~ 159 (252)
T PF11019_consen 83 ESDVPNIINSLQNKGIPVIALTARG-PNMEDWTLRELKSLGID--FSSSSFPEDGIISFPVFDSALSRAPSFYDGILFTG 159 (252)
T ss_pred chhHHHHHHHHHHCCCcEEEEcCCC-hhhHHHHHHHHHHCCCC--ccccccccCcceecccccCCCCCCceeecCeEEeC
Confidence 4788999999999999999999776 554444 34456664 211 022233
Q ss_pred CCCcHHHHHHHHHHcCCCCCcEEEEeCCcccHHHHH----HcCCeEEEECCC
Q 032106 56 WSHKTDHFQRIHSRTGVPFNSMLFFDDEDRNIDAVS----KMGVTGILVGNG 103 (147)
Q Consensus 56 ~kp~~~~~~~~~~~~~~~~~~~v~VgDs~~Di~~a~----~~Gi~~i~v~~~ 103 (147)
.-++..++..++.++|..|+.+|||+|+..++.... ..||.++++.+.
T Consensus 160 ~~~KG~~L~~fL~~~~~~pk~IIfIDD~~~nl~sv~~a~k~~~I~f~G~~Yt 211 (252)
T PF11019_consen 160 GQDKGEVLKYFLDKINQSPKKIIFIDDNKENLKSVEKACKKSGIDFIGFHYT 211 (252)
T ss_pred CCccHHHHHHHHHHcCCCCCeEEEEeCCHHHHHHHHHHHhhCCCcEEEEEEc
Confidence 678999999999999999999999999999876544 469998888764
No 156
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=97.59 E-value=0.00012 Score=55.62 Aligned_cols=49 Identities=16% Similarity=0.306 Sum_probs=44.1
Q ss_pred eecCCCCCcHHHHHHHHHHcCCCCCcEEEEeCCcccHHHHHHcCCeEEE
Q 032106 51 EIFSSWSHKTDHFQRIHSRTGVPFNSMLFFDDEDRNIDAVSKMGVTGIL 99 (147)
Q Consensus 51 ~~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgDs~~Di~~a~~~Gi~~i~ 99 (147)
+.....-.|...++.+++.+|+++++++.|||+.+|+.+.+.+|..+++
T Consensus 189 eI~~~gvsKg~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vAm 237 (270)
T PRK10513 189 EILDKRVNKGTGVKSLAEHLGIKPEEVMAIGDQENDIAMIEYAGVGVAM 237 (270)
T ss_pred EEeCCCCChHHHHHHHHHHhCCCHHHEEEECCchhhHHHHHhCCceEEe
Confidence 5666678899999999999999999999999999999999999996444
No 157
>PRK10976 putative hydrolase; Provisional
Probab=97.58 E-value=0.00012 Score=55.60 Aligned_cols=49 Identities=16% Similarity=0.302 Sum_probs=43.4
Q ss_pred eecCCCCCcHHHHHHHHHHcCCCCCcEEEEeCCcccHHHHHHcCCeEEE
Q 032106 51 EIFSSWSHKTDHFQRIHSRTGVPFNSMLFFDDEDRNIDAVSKMGVTGIL 99 (147)
Q Consensus 51 ~~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgDs~~Di~~a~~~Gi~~i~ 99 (147)
+.....-.|...++.+++.+|+++++++.|||+.+|+.+.+.+|..+++
T Consensus 183 eI~~~gvsKg~al~~l~~~lgi~~~~viafGD~~NDi~Ml~~ag~~vAm 231 (266)
T PRK10976 183 EVMAGGVSKGHALEAVAKKLGYSLKDCIAFGDGMNDAEMLSMAGKGCIM 231 (266)
T ss_pred EEEcCCCChHHHHHHHHHHcCCCHHHeEEEcCCcccHHHHHHcCCCeee
Confidence 5555667889999999999999999999999999999999999986443
No 158
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.53 E-value=0.00047 Score=61.21 Aligned_cols=97 Identities=14% Similarity=0.128 Sum_probs=71.3
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccc------cc-----------------eecCCCCCc
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFV------AK-----------------EIFSSWSHK 59 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~------~~-----------------~~~~~~kp~ 59 (147)
.|.|+++++++.|+++|+++.++| ++.+..+..+.++.|+..--. +. ..+ ..-.
T Consensus 547 ppr~~v~~aI~~l~~AGI~v~MiT-GD~~~TA~aIa~~~Gi~~~~~~~~vi~G~el~~l~~~el~~~~~~~~Vf--ARvs 623 (917)
T COG0474 547 PPREDVKEAIEELREAGIKVWMIT-GDHVETAIAIAKECGIEAEAESALVIDGAELDALSDEELAELVEELSVF--ARVS 623 (917)
T ss_pred CCCccHHHHHHHHHHCCCcEEEEC-CCCHHHHHHHHHHcCCCCCCCceeEeehHHhhhcCHHHHHHHhhhCcEE--EEcC
Confidence 477999999999999999999999 555899999999999743211 10 111 2234
Q ss_pred HHHHHHHHHHcCCCCCcEEEEeCCcccHHHHHHcCCeEEEECC
Q 032106 60 TDHFQRIHSRTGVPFNSMLFFDDEDRNIDAVSKMGVTGILVGN 102 (147)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~v~VgDs~~Di~~a~~~Gi~~i~v~~ 102 (147)
|+.=..+.+.+.-.-.-+.|.||+.||..|-++|.+.......
T Consensus 624 P~qK~~IV~~lq~~g~vVamtGDGvNDapALk~ADVGIamg~~ 666 (917)
T COG0474 624 PEQKARIVEALQKSGHVVAMTGDGVNDAPALKAADVGIAMGGE 666 (917)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCchhHHHHHhcCccEEeccc
Confidence 4444444454544457799999999999999999998755543
No 159
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=97.52 E-value=0.001 Score=51.07 Aligned_cols=89 Identities=12% Similarity=0.159 Sum_probs=56.6
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCCChH--HHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHHcCCCCCcEEE
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVASRSPSPD--IANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLF 79 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~--~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~ 79 (147)
..++||+.++|+.|+++|++++++||+.... .....++.+|+..-.+ +.+. ........+++......++++
T Consensus 17 ~~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~~~~--~i~t----s~~~~~~~l~~~~~~~~~v~~ 90 (279)
T TIGR01452 17 ERVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFNGLAE--QLFS----SALCAARLLRQPPDAPKAVYV 90 (279)
T ss_pred CeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChh--hEec----HHHHHHHHHHhhCcCCCEEEE
Confidence 3578999999999999999999999865222 2224567788753222 2322 234444555554444567999
Q ss_pred EeCCcccHHHHHHcCCeE
Q 032106 80 FDDEDRNIDAVSKMGVTG 97 (147)
Q Consensus 80 VgDs~~Di~~a~~~Gi~~ 97 (147)
+|+.. -....+.+|+..
T Consensus 91 iG~~~-~~~~l~~~g~~~ 107 (279)
T TIGR01452 91 IGEEG-LRAELDAAGIRL 107 (279)
T ss_pred EcCHH-HHHHHHHCCCEE
Confidence 99852 234455566653
No 160
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=97.52 E-value=0.00074 Score=50.74 Aligned_cols=97 Identities=11% Similarity=0.025 Sum_probs=60.6
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCCChH--HHHHHHHhcCcccccccc--eecC-CCCC----cHHHHHHHHHHcCC
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVASRSPSPD--IANTFLEKLNIKSMFVAK--EIFS-SWSH----KTDHFQRIHSRTGV 72 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~--~~~~~l~~~gl~~~f~~~--~~~~-~~kp----~~~~~~~~~~~~~~ 72 (147)
..+.|++.++++.|+++|++++++|+..... ....-|...|+..+ +.. .... ..++ |.....++.++ |.
T Consensus 119 apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~~-~~LiLR~~~d~~~~~~~yKs~~R~~l~~~-GY 196 (229)
T TIGR01675 119 APALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINAGFTGW-KHLILRGLEDSNKTVVTYKSEVRKSLMEE-GY 196 (229)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCCCCc-CeeeecCCCCCCchHhHHHHHHHHHHHhC-Cc
Confidence 3578999999999999999999999887322 13455677887654 221 1111 1121 33333333322 22
Q ss_pred CCCcEEEEeCCcccHHHHHHcCCeEEEECCC
Q 032106 73 PFNSMLFFDDEDRNIDAVSKMGVTGILVGNG 103 (147)
Q Consensus 73 ~~~~~v~VgDs~~Di~~a~~~Gi~~i~v~~~ 103 (147)
.=+..|||..+|+.+. -+|.+++-++.+
T Consensus 197 --rIv~~iGDq~sDl~G~-~~~~RtFKLPNP 224 (229)
T TIGR01675 197 --RIWGNIGDQWSDLLGS-PPGRRTFKLPNP 224 (229)
T ss_pred --eEEEEECCChHHhcCC-CccCceeeCCCC
Confidence 2378899999999753 456666665543
No 161
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=97.51 E-value=0.00079 Score=60.32 Aligned_cols=94 Identities=13% Similarity=0.087 Sum_probs=66.1
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccc----------------------------cccc----
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSM----------------------------FVAK---- 50 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~----------------------------f~~~---- 50 (147)
.+.|+++++|+.|+++|+++.++|+.+ ...+..+.+.+|+..- ++..
T Consensus 568 plr~~v~~aI~~l~~~Gi~v~~~TGd~-~~ta~~ia~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vi~G~~l~~ 646 (997)
T TIGR01106 568 PPRAAVPDAVGKCRSAGIKVIMVTGDH-PITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKD 646 (997)
T ss_pred CChHHHHHHHHHHHHCCCeEEEECCCC-HHHHHHHHHHcCCCCCCccchhhhhhhccccccccccccccceEEEhHHhhh
Confidence 467999999999999999999999666 7888899999998421 0000
Q ss_pred -------------e--ecCCCCCcHHHHHHHHHHcCCCCCcEEEEeCCcccHHHHHHcCCeEEE
Q 032106 51 -------------E--IFSSWSHKTDHFQRIHSRTGVPFNSMLFFDDEDRNIDAVSKMGVTGIL 99 (147)
Q Consensus 51 -------------~--~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgDs~~Di~~a~~~Gi~~i~ 99 (147)
. .+.. -.|+.-..+.+.+.-...-+.|+||+.+|..+-+.+.+...+
T Consensus 647 l~~~el~~~~~~~~~~VfaR--~sPeqK~~IV~~lq~~g~vv~~~GDG~ND~paLk~AdVGiam 708 (997)
T TIGR01106 647 MTSEQLDEILKYHTEIVFAR--TSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAM 708 (997)
T ss_pred CCHHHHHHHHHhcCCEEEEE--CCHHHHHHHHHHHHHCCCEEEEECCCcccHHHHhhCCcceec
Confidence 0 2222 233333333343333345699999999999999999887543
No 162
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.47 E-value=0.0013 Score=54.02 Aligned_cols=90 Identities=20% Similarity=0.385 Sum_probs=70.0
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcC-c---ccccccceecCCCCCcHHHHHHHHHHcCCCCCcEE
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLN-I---KSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSML 78 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~g-l---~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v 78 (147)
.+|-.....+..|+++|+.++|+|-++ ...++.+..+.. + .+.|.. ..-.+.||.+.++.+++++++..+..+
T Consensus 255 ~~fk~fQ~~Ik~l~kqGVlLav~SKN~-~~da~evF~khp~MiLkeedfa~--~~iNW~~K~eNirkIAkklNlg~dSmv 331 (574)
T COG3882 255 EAFKTFQNFIKGLKKQGVLLAVCSKNT-EKDAKEVFRKHPDMILKEEDFAV--FQINWDPKAENIRKIAKKLNLGLDSMV 331 (574)
T ss_pred hhHHHHHHHHHHHHhccEEEEEecCCc-hhhHHHHHhhCCCeEeeHhhhhh--heecCCcchhhHHHHHHHhCCCccceE
Confidence 456677889999999999999999555 455566665542 1 112222 223478999999999999999999999
Q ss_pred EEeCCcccHHHHHHcCC
Q 032106 79 FFDDEDRNIDAVSKMGV 95 (147)
Q Consensus 79 ~VgDs~~Di~~a~~~Gi 95 (147)
||+|++...+-.++-+-
T Consensus 332 FiDD~p~ErE~vk~~~~ 348 (574)
T COG3882 332 FIDDNPAERELVKRELP 348 (574)
T ss_pred EecCCHHHHHHHHhcCc
Confidence 99999999998888765
No 163
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=97.46 E-value=0.001 Score=55.22 Aligned_cols=82 Identities=18% Similarity=0.183 Sum_probs=62.3
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHHcCCCCCcEEEEeC
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLFFDD 82 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgD 82 (147)
.+.|++.++++.|++.|+++.++|+.+ ...+..+.+.+|+ |. . -.|+.-..+.+.+.-....+.||||
T Consensus 347 ~lr~~~~~~i~~l~~~gi~~~~ltGD~-~~~a~~ia~~lgi---~~------~--~~p~~K~~~v~~l~~~g~~v~~vGD 414 (499)
T TIGR01494 347 PLRDDAKETISELREAGIRVIMLTGDN-VLTAKAIAKELGI---FA------R--VTPEEKAALVEALQKKGRVVAMTGD 414 (499)
T ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCC-HHHHHHHHHHcCc---ee------c--cCHHHHHHHHHHHHHCCCEEEEECC
Confidence 578999999999999999999999555 7888889999987 11 1 1333333444443333377999999
Q ss_pred CcccHHHHHHcCCe
Q 032106 83 EDRNIDAVSKMGVT 96 (147)
Q Consensus 83 s~~Di~~a~~~Gi~ 96 (147)
+.+|..+.+.+++.
T Consensus 415 g~nD~~al~~Advg 428 (499)
T TIGR01494 415 GVNDAPALKKADVG 428 (499)
T ss_pred ChhhHHHHHhCCCc
Confidence 99999999988765
No 164
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=97.43 E-value=0.00085 Score=45.70 Aligned_cols=88 Identities=30% Similarity=0.335 Sum_probs=68.7
Q ss_pred CCCCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccc-------eecCCCCCcHHHHHHHHHHcCCC
Q 032106 1 MPSLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAK-------EIFSSWSHKTDHFQRIHSRTGVP 73 (147)
Q Consensus 1 ~p~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~-------~~~~~~kp~~~~~~~~~~~~~~~ 73 (147)
+|.+|++++..|..|++.|+.++++|++..+.++...|+.+.+..-+... ......-.+-..|..+-+..+..
T Consensus 42 e~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~iA~q~L~~fkvk~~Gvlkps~e~ft~~~~g~gsklghfke~~n~s~~~ 121 (144)
T KOG4549|consen 42 EMIFYDDIRRILVDLKKLGVTLIHASRTMAPQIASQGLETFKVKQTGVLKPSLEEFTFEAVGDGSKLGHFKEFTNNSNSI 121 (144)
T ss_pred eeeeccchhHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhccCcccccchhhhcCceeeecCcccchhHHHHhhccCcc
Confidence 36789999999999999999999999999999999999988876433221 12222335667788888888988
Q ss_pred CCcEEEEeCCcccHH
Q 032106 74 FNSMLFFDDEDRNID 88 (147)
Q Consensus 74 ~~~~v~VgDs~~Di~ 88 (147)
..+..+++|--++-+
T Consensus 122 ~k~~~~fdDesrnke 136 (144)
T KOG4549|consen 122 EKNKQVFDDESRNKE 136 (144)
T ss_pred hhceeeecccccCCc
Confidence 888999988766544
No 165
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.39 E-value=0.0025 Score=44.95 Aligned_cols=96 Identities=21% Similarity=0.256 Sum_probs=64.4
Q ss_pred CchhHHHHHHHHHHC-C-CeEEEEcCCCCh-------HHHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHHc-C--
Q 032106 4 LYPHAKGILHALKDK-G-IDVAVASRSPSP-------DIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRT-G-- 71 (147)
Q Consensus 4 ~~pgv~~~L~~L~~~-g-~~l~i~S~~~~~-------~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~-~-- 71 (147)
..|.-..-++.++.- | ..++++||+.-. ..++.+-...|+. ....++.||.+-.++...+ +
T Consensus 62 Iwp~~l~~ie~~~~vygek~i~v~SNsaG~~~~D~d~s~Ak~le~k~gIp-------VlRHs~kKP~ct~E~~~y~~~Ns 134 (190)
T KOG2961|consen 62 IWPPLLPSIERCKAVYGEKDIAVFSNSAGLTEYDHDDSKAKALEAKIGIP-------VLRHSVKKPACTAEEVEYHFGNS 134 (190)
T ss_pred cCchhHHHHHHHHHHhCcccEEEEecCcCccccCCchHHHHHHHHhhCCc-------eEeecccCCCccHHHHHHHhCCc
Confidence 445555666666654 3 778999976421 1233333444543 3344555666666665543 4
Q ss_pred --CCCCcEEEEeCCcc-cHHHHHHcCCeEEEECCCCCh
Q 032106 72 --VPFNSMLFFDDEDR-NIDAVSKMGVTGILVGNGVNL 106 (147)
Q Consensus 72 --~~~~~~v~VgDs~~-Di~~a~~~Gi~~i~v~~~~~~ 106 (147)
-.+++++||||.+. ||..|..+|.-.+|..+|...
T Consensus 135 hv~~~se~~~vGDRlfTDI~~aN~mGs~gVw~~~gv~~ 172 (190)
T KOG2961|consen 135 HVCTSSELIMVGDRLFTDIVYANRMGSLGVWTEPGVRA 172 (190)
T ss_pred ccCChhHeEEEccchhhhHhhhhhccceeEEecccccc
Confidence 47899999999988 999999999999999988653
No 166
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=97.36 E-value=0.0008 Score=50.88 Aligned_cols=51 Identities=10% Similarity=0.158 Sum_probs=45.0
Q ss_pred eecCCCCCcHHHHHHHHHHcCCC--CCcEEEEeCCcccHHHHHHcCCeEEEEC
Q 032106 51 EIFSSWSHKTDHFQRIHSRTGVP--FNSMLFFDDEDRNIDAVSKMGVTGILVG 101 (147)
Q Consensus 51 ~~~~~~kp~~~~~~~~~~~~~~~--~~~~v~VgDs~~Di~~a~~~Gi~~i~v~ 101 (147)
+..+..-.|...++++++.+|++ .+++++|||+.+|+.+.+.+|..+++-.
T Consensus 169 ei~~~~~~Kg~ai~~l~~~~~i~~~~~~~~a~GD~~ND~~Ml~~ag~~vam~N 221 (256)
T TIGR01486 169 HVLGAGSDKGKAANALKQFYNQPGGAIKVVGLGDSPNDLPLLEVVDLAVVVPG 221 (256)
T ss_pred EEecCCCCHHHHHHHHHHHHhhcCCCceEEEEcCCHhhHHHHHHCCEEEEeCC
Confidence 56666778999999999999999 9999999999999999999998866543
No 167
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=97.31 E-value=0.00077 Score=50.62 Aligned_cols=96 Identities=11% Similarity=0.120 Sum_probs=60.3
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCCh--HHHHHHHHhcCcccccccc-eecCC------CCCcHHHHHHHHHH-cCC
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSP--DIANTFLEKLNIKSMFVAK-EIFSS------WSHKTDHFQRIHSR-TGV 72 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~--~~~~~~l~~~gl~~~f~~~-~~~~~------~kp~~~~~~~~~~~-~~~ 72 (147)
.++||+.++++.++++|+.|+++||+.+. .....-|...|+..+=..+ ..... ..-|..-...+.++ +.+
T Consensus 115 ~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL~~~G~~~~~~l~lr~~~~~~~~~~~~yK~~~r~~i~~~Gy~I 194 (229)
T PF03767_consen 115 PAIPGALELYNYARSRGVKVFFITGRPESQREATEKNLKKAGFPGWDHLILRPDKDPSKKSAVEYKSERRKEIEKKGYRI 194 (229)
T ss_dssp EEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHHHHHTTSTBSCGEEEEESSTSS------SHHHHHHHHHTTEEE
T ss_pred cccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHHHHcCCCccchhccccccccccccccccchHHHHHHHHcCCcE
Confidence 46899999999999999999999987743 2333446677764321111 11111 11255566666666 444
Q ss_pred CCCcEEEEeCCcccHHHHHHc---CCeEEEECC
Q 032106 73 PFNSMLFFDDEDRNIDAVSKM---GVTGILVGN 102 (147)
Q Consensus 73 ~~~~~v~VgDs~~Di~~a~~~---Gi~~i~v~~ 102 (147)
+++|||+..|+..++.. +.+.+-++.
T Consensus 195 ----i~~iGD~~~D~~~~~~~~~~~~r~f~lPN 223 (229)
T PF03767_consen 195 ----IANIGDQLSDFSGAKTAGARAERWFKLPN 223 (229)
T ss_dssp ----EEEEESSGGGCHCTHHHHHHHTTEEE-TT
T ss_pred ----EEEeCCCHHHhhcccccccccceEEEcCC
Confidence 89999999999984332 445555544
No 168
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=97.29 E-value=0.00029 Score=51.19 Aligned_cols=89 Identities=24% Similarity=0.377 Sum_probs=51.5
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCCCh------HHHHHHHHhc-CcccccccceecCCCCCcHHHHHHHHHHcCCCC
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVASRSPSP------DIANTFLEKL-NIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPF 74 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S~~~~~------~~~~~~l~~~-gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~ 74 (147)
..++||+.++|+.|.+.|+.+.++|.+... ......+++. +... ++. -.+...| . .++.
T Consensus 72 l~p~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~~i~-~~~-~~~~~~K--~--------~v~~-- 137 (191)
T PF06941_consen 72 LPPIPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLERHFPFIP-YDN-LIFTGDK--T--------LVGG-- 137 (191)
T ss_dssp --B-TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHHHTHHH-HCC-EEEESSG--G--------GC----
T ss_pred CCccHHHHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHHHHcCCCc-hhe-EEEecCC--C--------eEec--
Confidence 368899999999999999666666655433 1222334433 2111 111 1222222 1 1222
Q ss_pred CcEEEEeCCcccHHHHHHcCCeEEEECCCCCh
Q 032106 75 NSMLFFDDEDRNIDAVSKMGVTGILVGNGVNL 106 (147)
Q Consensus 75 ~~~v~VgDs~~Di~~a~~~Gi~~i~v~~~~~~ 106 (147)
+ ++|+|++.++..+...|+.++++..+++.
T Consensus 138 -D-vlIDD~~~n~~~~~~~g~~~iLfd~p~Nr 167 (191)
T PF06941_consen 138 -D-VLIDDRPHNLEQFANAGIPVILFDQPYNR 167 (191)
T ss_dssp -S-EEEESSSHHHSS-SSESSEEEEE--GGGT
T ss_pred -c-EEecCChHHHHhccCCCceEEEEcCCCCC
Confidence 2 89999999999999999999999877664
No 169
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=97.19 E-value=0.00067 Score=51.80 Aligned_cols=50 Identities=8% Similarity=0.042 Sum_probs=44.4
Q ss_pred eecCCCCCcHHHHHHHHHHcCC---CCCcEEEEeCCcccHHHHHHcCCeEEEE
Q 032106 51 EIFSSWSHKTDHFQRIHSRTGV---PFNSMLFFDDEDRNIDAVSKMGVTGILV 100 (147)
Q Consensus 51 ~~~~~~kp~~~~~~~~~~~~~~---~~~~~v~VgDs~~Di~~a~~~Gi~~i~v 100 (147)
+.....-.|...++.+++.+|+ ++++++.|||+.||+.+-+.+|..+++-
T Consensus 180 Ei~~~g~sKg~al~~l~~~lgi~~~~~~~viafGDs~NDi~Ml~~ag~gvAM~ 232 (271)
T PRK03669 180 HVLDASAGKDQAANWLIATYQQLSGTRPTTLGLGDGPNDAPLLDVMDYAVVVK 232 (271)
T ss_pred EEecCCCCHHHHHHHHHHHHHhhcCCCceEEEEcCCHHHHHHHHhCCEEEEec
Confidence 5566677899999999999999 9999999999999999999999875554
No 170
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=97.15 E-value=0.0038 Score=56.38 Aligned_cols=41 Identities=22% Similarity=0.294 Sum_probs=36.8
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcc
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIK 44 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~ 44 (147)
.+-|+++++++.|+++|+++.++|+-+ +..+..+.++.|+.
T Consensus 656 ~lr~~~~~~I~~l~~agi~v~miTGD~-~~TA~~iA~~~gii 696 (1054)
T TIGR01657 656 PLKPDTKEVIKELKRASIRTVMITGDN-PLTAVHVARECGIV 696 (1054)
T ss_pred CCCccHHHHHHHHHHCCCeEEEECCCC-HHHHHHHHHHcCCC
Confidence 478999999999999999999999555 88889999999984
No 171
>PLN02887 hydrolase family protein
Probab=97.15 E-value=0.00077 Score=57.04 Aligned_cols=49 Identities=16% Similarity=0.261 Sum_probs=43.7
Q ss_pred eecCCCCCcHHHHHHHHHHcCCCCCcEEEEeCCcccHHHHHHcCCeEEE
Q 032106 51 EIFSSWSHKTDHFQRIHSRTGVPFNSMLFFDDEDRNIDAVSKMGVTGIL 99 (147)
Q Consensus 51 ~~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgDs~~Di~~a~~~Gi~~i~ 99 (147)
+++...-.|...++.+++.+|+++++++.|||+.||+++.+.+|..+++
T Consensus 500 EI~p~gvSKG~ALk~L~e~lGI~~eeviAFGDs~NDIeMLe~AG~gVAM 548 (580)
T PLN02887 500 EIVPPGTSKGNGVKMLLNHLGVSPDEIMAIGDGENDIEMLQLASLGVAL 548 (580)
T ss_pred EEecCCCCHHHHHHHHHHHcCCCHHHEEEEecchhhHHHHHHCCCEEEe
Confidence 5666677899999999999999999999999999999999999986443
No 172
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=97.14 E-value=0.0083 Score=42.43 Aligned_cols=93 Identities=15% Similarity=0.201 Sum_probs=59.3
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHH---HHHHHh-----cCccc--cccc-ce-------ecCCCCC---cHH
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIA---NTFLEK-----LNIKS--MFVA-KE-------IFSSWSH---KTD 61 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~---~~~l~~-----~gl~~--~f~~-~~-------~~~~~kp---~~~ 61 (147)
...|++.+++++|+++|++++++|+++ ...+ +..+.. .++.. .+-. .. .+-..+| |.+
T Consensus 27 ~~~~~~~~a~~~l~~~G~~ivy~TGRp-~~~~~~t~~~l~~~~~~~~~lp~g~li~~~g~~~~~~~~e~i~~~~~~~K~~ 105 (157)
T smart00775 27 WTHPGVAKLYRDIQNNGYKILYLTARP-IGQADRTRSYLSQIKQDGHNLPHGPVLLSPDRLFAALHREVISKKPEVFKIA 105 (157)
T ss_pred cCCHHHHHHHHHHHHcCCeEEEEcCCc-HHHHHHHHHHHHHhhhccccCCCceEEEcCCcchhhhhcccccCCHHHHHHH
Confidence 568999999999999999999999887 3433 355655 23321 1111 00 1112233 555
Q ss_pred HHHHHHHHcCCCCCcE-EEEeCCcccHHHHHHcCCe
Q 032106 62 HFQRIHSRTGVPFNSM-LFFDDEDRNIDAVSKMGVT 96 (147)
Q Consensus 62 ~~~~~~~~~~~~~~~~-v~VgDs~~Di~~a~~~Gi~ 96 (147)
.+..+++.+.-.--.. +-+||+..|+++=+++|+.
T Consensus 106 ~l~~i~~~~~~~~~~f~~~~gn~~~D~~~y~~~gi~ 141 (157)
T smart00775 106 CLRDIKSLFPPQGNPFYAGFGNRITDVISYSAVGIP 141 (157)
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCchhHHHHHHcCCC
Confidence 6666665554222233 4478889999999999995
No 173
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=97.13 E-value=0.0023 Score=48.33 Aligned_cols=89 Identities=13% Similarity=0.066 Sum_probs=66.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCcccccccceecCC-CCCcHHHHHHHHHHcCCCCCcEEEEeCCcccHHHHHHcCCeE
Q 032106 19 GIDVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFSS-WSHKTDHFQRIHSRTGVPFNSMLFFDDEDRNIDAVSKMGVTG 97 (147)
Q Consensus 19 g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~~~~~-~kp~~~~~~~~~~~~~~~~~~~v~VgDs~~Di~~a~~~Gi~~ 97 (147)
+..-++||++.-... -..+=.++|+.+|....++.. .-.|..+|++|..++|-+....++|||+...-.+|+.++|++
T Consensus 175 ~~vNvLVTs~qLVPa-LaKcLLy~L~~~f~ieNIYSa~kvGK~~cFe~I~~Rfg~p~~~f~~IGDG~eEe~aAk~l~wPF 253 (274)
T TIGR01658 175 NCINVLVTSGQLIPS-LAKCLLFRLDTIFRIENVYSSIKVGKLQCFKWIKERFGHPKVRFCAIGDGWEECTAAQAMNWPF 253 (274)
T ss_pred ceeEEEEEcCccHHH-HHHHHHhccCCccccccccchhhcchHHHHHHHHHHhCCCCceEEEeCCChhHHHHHHhcCCCe
Confidence 345677775553222 233445788899987544443 346889999999999998899999999999999999999999
Q ss_pred EEECCCCChHH
Q 032106 98 ILVGNGVNLGA 108 (147)
Q Consensus 98 i~v~~~~~~~~ 108 (147)
+-+....+...
T Consensus 254 w~I~~h~Dl~~ 264 (274)
T TIGR01658 254 VKIDLHPDSSH 264 (274)
T ss_pred EEeecCCCHHH
Confidence 99987665443
No 174
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=97.11 E-value=0.003 Score=45.71 Aligned_cols=92 Identities=16% Similarity=0.319 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHCCCeEEEEcCCCChH---HHHHHHHhcCcccccccceecCCCCCcHHHHH--HHHHHcCCCCCcEEEEe
Q 032106 7 HAKGILHALKDKGIDVAVASRSPSPD---IANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQ--RIHSRTGVPFNSMLFFD 81 (147)
Q Consensus 7 gv~~~L~~L~~~g~~l~i~S~~~~~~---~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~--~~~~~~~~~~~~~v~Vg 81 (147)
-+++++..-.++|-.++.+|+..... +.+.+.+.+.+...... ++...||++.-|. ..+++-++ -++-|
T Consensus 118 vA~qLI~MHq~RGD~i~FvTGRt~gk~d~vsk~Lak~F~i~~m~pv--~f~Gdk~k~~qy~Kt~~i~~~~~----~IhYG 191 (237)
T COG3700 118 VARQLIDMHQRRGDAIYFVTGRTPGKTDTVSKTLAKNFHITNMNPV--IFAGDKPKPGQYTKTQWIQDKNI----RIHYG 191 (237)
T ss_pred HHHHHHHHHHhcCCeEEEEecCCCCcccccchhHHhhcccCCCcce--eeccCCCCcccccccHHHHhcCc----eEEec
Confidence 35677777788899999999765221 33345555666544443 5555667666553 34455555 58999
Q ss_pred CCcccHHHHHHcCCeEEEECCCC
Q 032106 82 DEDRNIDAVSKMGVTGILVGNGV 104 (147)
Q Consensus 82 Ds~~Di~~a~~~Gi~~i~v~~~~ 104 (147)
||.+||.+|+.+|++.|-+.+..
T Consensus 192 DSD~Di~AAkeaG~RgIRilRAa 214 (237)
T COG3700 192 DSDNDITAAKEAGARGIRILRAA 214 (237)
T ss_pred CCchhhhHHHhcCccceeEEecC
Confidence 99999999999999988876543
No 175
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=97.11 E-value=0.0014 Score=49.35 Aligned_cols=49 Identities=18% Similarity=0.260 Sum_probs=41.8
Q ss_pred CCCCcHHHHHHHHHHcCCCCCcEEEEeCCcccHHHHHHc-------CCeEEEECCC
Q 032106 55 SWSHKTDHFQRIHSRTGVPFNSMLFFDDEDRNIDAVSKM-------GVTGILVGNG 103 (147)
Q Consensus 55 ~~kp~~~~~~~~~~~~~~~~~~~v~VgDs~~Di~~a~~~-------Gi~~i~v~~~ 103 (147)
..-.|...+..++++++..+.+++||||+.+|+.+++.+ |..++.+.++
T Consensus 164 ~~~~Kg~a~~~~~~~~~~~~~~~i~iGD~~~D~~~~~~~~~~~~~~g~~~v~v~~g 219 (244)
T TIGR00685 164 RFVNKGEIVKRLLWHQPGSGISPVYLGDDITDEDAFRVVNNQWGNYGFYPVPIGSG 219 (244)
T ss_pred CCCCHHHHHHHHHHhcccCCCceEEEcCCCcHHHHHHHHhcccCCCCeEEEEEecC
Confidence 344567999999999999999999999999999999988 6777778533
No 176
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=97.04 E-value=0.0041 Score=54.15 Aligned_cols=94 Identities=14% Similarity=0.132 Sum_probs=68.4
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccc-------------cc------------eecCCCC
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFV-------------AK------------EIFSSWS 57 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~-------------~~------------~~~~~~k 57 (147)
.|.|++.++++.+++.|+++-++|+-+ ...+..+.++.|+...=+ .. ..+.+
T Consensus 584 PPR~ev~~ai~~c~~aGIrV~mITGD~-~~TA~AI~r~iGi~~~~ed~~~~~~TG~efD~ls~~~~~~~~~~~~vFaR-- 660 (972)
T KOG0202|consen 584 PPRPEVADAIELCRQAGIRVIMITGDN-KETAEAIAREIGIFSEDEDVSSMALTGSEFDDLSDEELDDAVRRVLVFAR-- 660 (972)
T ss_pred CCchhHHHHHHHHHHcCCEEEEEcCCC-HHHHHHHHHHhCCCcCCccccccccchhhhhcCCHHHHHHHhhcceEEEe--
Confidence 467999999999999999999999555 899999999999854322 10 11112
Q ss_pred CcHHHHHHHHHHcCCCCCcEEEEeCCcccHHHHHHcCCeEEE
Q 032106 58 HKTDHFQRIHSRTGVPFNSMLFFDDEDRNIDAVSKMGVTGIL 99 (147)
Q Consensus 58 p~~~~~~~~~~~~~~~~~~~v~VgDs~~Di~~a~~~Gi~~i~ 99 (147)
-.|..-.++.+.+.-.-+=+.|-||+.+|-.+-+.+.|...+
T Consensus 661 ~~P~HK~kIVeaLq~~geivAMTGDGVNDApALK~AdIGIAM 702 (972)
T KOG0202|consen 661 AEPQHKLKIVEALQSRGEVVAMTGDGVNDAPALKKADIGIAM 702 (972)
T ss_pred cCchhHHHHHHHHHhcCCEEEecCCCccchhhhhhcccceee
Confidence 233334444444444446699999999999999999887443
No 177
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=97.04 E-value=0.00051 Score=48.21 Aligned_cols=91 Identities=16% Similarity=0.297 Sum_probs=56.5
Q ss_pred CchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCc-ccccccceecCCCCCcHHHHHHHHHHcCCCCCcEEEEeC
Q 032106 4 LYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNI-KSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLFFDD 82 (147)
Q Consensus 4 ~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl-~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgD 82 (147)
+.||+.++|+.|.+. +.++|.|.+. +..++.+++.+.- ..+|..+-.-..+......+.+-++.+|.+.+++|+|+|
T Consensus 37 ~RP~l~~FL~~l~~~-~ev~i~T~~~-~~ya~~v~~~ldp~~~~~~~~~~r~~~~~~~~~~~KdL~~l~~~~~~vvivDD 114 (159)
T PF03031_consen 37 LRPGLDEFLEELSKH-YEVVIWTSAS-EEYAEPVLDALDPNGKLFSRRLYRDDCTFDKGSYIKDLSKLGRDLDNVVIVDD 114 (159)
T ss_dssp E-TTHHHHHHHHHHH-CEEEEE-SS--HHHHHHHHHHHTTTTSSEEEEEEGGGSEEETTEEE--GGGSSS-GGGEEEEES
T ss_pred eCchHHHHHHHHHHh-ceEEEEEeeh-hhhhhHHHHhhhhhccccccccccccccccccccccchHHHhhccccEEEEeC
Confidence 579999999999766 9999999776 8888999999886 456765311110100010112456667778899999999
Q ss_pred CcccHHHHHHcCCe
Q 032106 83 EDRNIDAVSKMGVT 96 (147)
Q Consensus 83 s~~Di~~a~~~Gi~ 96 (147)
+..-...-...++.
T Consensus 115 ~~~~~~~~~~N~i~ 128 (159)
T PF03031_consen 115 SPRKWALQPDNGIP 128 (159)
T ss_dssp -GGGGTTSGGGEEE
T ss_pred CHHHeeccCCceEE
Confidence 99855433444444
No 178
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=97.04 E-value=0.0028 Score=52.62 Aligned_cols=86 Identities=12% Similarity=0.144 Sum_probs=67.6
Q ss_pred CchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHHcCCCCCcEEEEeCC
Q 032106 4 LYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLFFDDE 83 (147)
Q Consensus 4 ~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgDs 83 (147)
.-||+++-+.+|++-|++...+|+-+ +-.+..+.+..|+++|.-. .+|+--..++++.+-.-.=+.|.||+
T Consensus 448 vK~Gi~ERf~elR~MgIkTvM~TGDN-~~TAa~IA~EAGVDdfiAe--------atPEdK~~~I~~eQ~~grlVAMtGDG 518 (681)
T COG2216 448 VKPGIKERFAELRKMGIKTVMITGDN-PLTAAAIAAEAGVDDFIAE--------ATPEDKLALIRQEQAEGRLVAMTGDG 518 (681)
T ss_pred cchhHHHHHHHHHhcCCeEEEEeCCC-HHHHHHHHHHhCchhhhhc--------CChHHHHHHHHHHHhcCcEEEEcCCC
Confidence 45899999999999999999999555 8888888999999887543 24454455555555555669999999
Q ss_pred cccHHHHHHcCCeEE
Q 032106 84 DRNIDAVSKMGVTGI 98 (147)
Q Consensus 84 ~~Di~~a~~~Gi~~i 98 (147)
.+|-.+-..+.+...
T Consensus 519 TNDAPALAqAdVg~A 533 (681)
T COG2216 519 TNDAPALAQADVGVA 533 (681)
T ss_pred CCcchhhhhcchhhh
Confidence 999988888776633
No 179
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=96.97 E-value=0.0058 Score=55.18 Aligned_cols=41 Identities=15% Similarity=0.123 Sum_probs=34.7
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcc
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIK 44 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~ 44 (147)
++.||++++|+.|+++|++++++|+-+ ...+..+....|+.
T Consensus 631 ~lq~~v~etI~~L~~AGIkv~mlTGD~-~~TA~~IA~~~~ii 671 (1057)
T TIGR01652 631 KLQEGVPETIELLRQAGIKIWVLTGDK-VETAINIGYSCRLL 671 (1057)
T ss_pred hhhhccHHHHHHHHHCCCeEEEEcCCc-HHHHHHHHHHhCCC
Confidence 467999999999999999999999554 77777887777764
No 180
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=96.91 E-value=0.0039 Score=47.23 Aligned_cols=53 Identities=23% Similarity=0.437 Sum_probs=42.4
Q ss_pred eecCCCCCcHHHHHHHHHHcCCCCCcEEEEeCCcccHHHHHHcCCeEEEECCCC
Q 032106 51 EIFSSWSHKTDHFQRIHSRTGVPFNSMLFFDDEDRNIDAVSKMGVTGILVGNGV 104 (147)
Q Consensus 51 ~~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgDs~~Di~~a~~~Gi~~i~v~~~~ 104 (147)
+.++..-.|....+++++++++++++++++|||.+|+.+. ..+...|.|....
T Consensus 158 dilP~~a~K~~Al~~L~~~~~~~~~~vl~aGDSgND~~mL-~~~~~~vvV~Na~ 210 (247)
T PF05116_consen 158 DILPKGASKGAALRYLMERWGIPPEQVLVAGDSGNDLEML-EGGDHGVVVGNAQ 210 (247)
T ss_dssp EEEETT-SHHHHHHHHHHHHT--GGGEEEEESSGGGHHHH-CCSSEEEE-TTS-
T ss_pred EEccCCCCHHHHHHHHHHHhCCCHHHEEEEeCCCCcHHHH-cCcCCEEEEcCCC
Confidence 5666677899999999999999999999999999999987 7788888887743
No 181
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=96.78 E-value=0.01 Score=44.83 Aligned_cols=81 Identities=11% Similarity=0.112 Sum_probs=56.8
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHH---HHHHHhcCcccccccceec-CCCCCcHHHHHHHHHHcCCCCCcEE
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIA---NTFLEKLNIKSMFVAKEIF-SSWSHKTDHFQRIHSRTGVPFNSML 78 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~---~~~l~~~gl~~~f~~~~~~-~~~kp~~~~~~~~~~~~~~~~~~~v 78 (147)
.+.||+.++|+....+|..++-+||+...... ..-|.+.|+...-+.--.+ ...+++..-++.+.+.+ .-++
T Consensus 122 k~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~~nLk~~g~~~~~~~~~llkk~~k~Ke~R~~~v~k~~----~iVm 197 (274)
T COG2503 122 KAVPGAVEFLNYVNSNGGKIFYISNRDQENEKDGTIENLKSEGLPQVLESHLLLKKDKKSKEVRRQAVEKDY----KIVM 197 (274)
T ss_pred ccCccHHHHHHHHHhcCcEEEEEeccchhcccchhHHHHHHcCcccccccceEEeeCCCcHHHHHHHHhhcc----ceee
Confidence 57899999999999999999999998743312 2246667776543332122 22566777777776633 4599
Q ss_pred EEeCCcccH
Q 032106 79 FFDDEDRNI 87 (147)
Q Consensus 79 ~VgDs~~Di 87 (147)
+|||+..|.
T Consensus 198 ~vGDNl~DF 206 (274)
T COG2503 198 LVGDNLDDF 206 (274)
T ss_pred EecCchhhh
Confidence 999999874
No 182
>PLN02382 probable sucrose-phosphatase
Probab=96.65 E-value=0.0044 Score=50.47 Aligned_cols=53 Identities=17% Similarity=0.254 Sum_probs=45.4
Q ss_pred eecCCCCCcHHHHHHHHHHc---CCCCCcEEEEeCCcccHHHHHHcCCeEEEECCC
Q 032106 51 EIFSSWSHKTDHFQRIHSRT---GVPFNSMLFFDDEDRNIDAVSKMGVTGILVGNG 103 (147)
Q Consensus 51 ~~~~~~kp~~~~~~~~~~~~---~~~~~~~v~VgDs~~Di~~a~~~Gi~~i~v~~~ 103 (147)
+..+..-.|...++.+++++ |+++++++.+||+.||+++.+.+|+..+.+.++
T Consensus 168 dI~p~g~sKg~Al~~L~~~~~~~gi~~~~~iafGDs~NDleMl~~ag~~gvam~NA 223 (413)
T PLN02382 168 DVLPQGAGKGQALAYLLKKLKAEGKAPVNTLVCGDSGNDAELFSVPDVYGVMVSNA 223 (413)
T ss_pred EEEeCCCCHHHHHHHHHHHhhhcCCChhcEEEEeCCHHHHHHHhcCCCCEEEEcCC
Confidence 55666667999999999999 999999999999999999999999655666553
No 183
>COG5610 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=96.64 E-value=0.0064 Score=49.89 Aligned_cols=93 Identities=12% Similarity=0.096 Sum_probs=73.9
Q ss_pred HHHHHHHHHHCCCeEEEEcCCCC-hHHHHHHHHhcCcccccccc---eecCCCCCcHHHHHHHHHHcCCCCCcEEEEeCC
Q 032106 8 AKGILHALKDKGIDVAVASRSPS-PDIANTFLEKLNIKSMFVAK---EIFSSWSHKTDHFQRIHSRTGVPFNSMLFFDDE 83 (147)
Q Consensus 8 v~~~L~~L~~~g~~l~i~S~~~~-~~~~~~~l~~~gl~~~f~~~---~~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgDs 83 (147)
..++.+.+.+.|.+|.++|.-.- ..+++.+|...|.+-+--.+ ..+...|.....|..+++.-+++|..++.+||.
T Consensus 104 ~~eL~e~ai~n~krVIlISDMYlps~Il~~~L~s~g~d~~nipiY~S~e~rl~KnSg~LFk~Vlk~EnVd~~~w~H~GDN 183 (635)
T COG5610 104 NIELVEEAIKNEKRVILISDMYLPSSILRTFLNSFGPDFNNIPIYMSSEFRLKKNSGNLFKAVLKLENVDPKKWIHCGDN 183 (635)
T ss_pred chHHHHHHHhCCCeEEEEecccCcHHHHHHHHHhcCCCccCceeeecceeehhcccchHHHHHHhhcCCChhheEEecCc
Confidence 45788999999999999995443 34667788888876321111 233447889999999999999999999999999
Q ss_pred cc-cHHHHHHcCCeEEEE
Q 032106 84 DR-NIDAVSKMGVTGILV 100 (147)
Q Consensus 84 ~~-Di~~a~~~Gi~~i~v 100 (147)
.+ |+..++++|+.+.+.
T Consensus 184 ~~aD~l~pk~LgI~Tlf~ 201 (635)
T COG5610 184 WVADYLKPKNLGISTLFY 201 (635)
T ss_pred hhhhhcCccccchhHHHH
Confidence 88 999999999987755
No 184
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=96.64 E-value=0.0013 Score=49.87 Aligned_cols=114 Identities=13% Similarity=0.167 Sum_probs=63.7
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCccc----------cccc-c--eecCC----CCCcHH-HHH
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKS----------MFVA-K--EIFSS----WSHKTD-HFQ 64 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~----------~f~~-~--~~~~~----~kp~~~-~~~ 64 (147)
.+.+|+.++++.|.++++++.|.|.+- ..+++.++++.+... .|+. . ..+.. .-.|.+ .+.
T Consensus 90 ~LRdg~~~~f~~L~~~~IP~lIFSAGl-gdvI~~vL~q~~~~~~Nv~VvSN~M~Fd~~g~l~gF~~~lIH~~NKn~~~l~ 168 (246)
T PF05822_consen 90 MLRDGVEEFFDKLEEHNIPLLIFSAGL-GDVIEEVLRQAGVFHPNVKVVSNFMDFDEDGVLVGFKGPLIHTFNKNESALE 168 (246)
T ss_dssp -B-BTHHHHHHHHHCTT--EEEEEEEE-HHHHHHHHHHTT--BTTEEEEEE-EEE-TTSBEEEE-SS---TT-HHHHHHT
T ss_pred hhhcCHHHHHHHHHhcCCCEEEEeCCc-HHHHHHHHHHcCCCCCCeEEEeeeEEECCcceEeecCCCceEEeeCCccccc
Confidence 567899999999999999999999776 889999999987532 2322 1 11111 111121 121
Q ss_pred --HHHHHcCCCCCcEEEEeCCcccHHHHHHc-CC---eEEEECCCCChHHHHHHHHHHHHhhcc
Q 032106 65 --RIHSRTGVPFNSMLFFDDEDRNIDAVSKM-GV---TGILVGNGVNLGALRQGLTKFSQNWNT 122 (147)
Q Consensus 65 --~~~~~~~~~~~~~v~VgDs~~Di~~a~~~-Gi---~~i~v~~~~~~~~~~~~l~~~~~~~~~ 122 (147)
...+.+ -...+++..||+..|+.+|..+ .. -.|++.... .++.++.|.+...+
T Consensus 169 ~~~~~~~~-~~R~NvlLlGDslgD~~Ma~G~~~~~~~lkIGFLn~~----ve~~l~~Y~~~yDI 227 (246)
T PF05822_consen 169 DSPYFKQL-KKRTNVLLLGDSLGDLHMADGVPDEENVLKIGFLNDK----VEENLEKYLEAYDI 227 (246)
T ss_dssp THHHHHCT-TT--EEEEEESSSGGGGTTTT-S--SEEEEEEEE-SS----HHHHHHHHHCCSSE
T ss_pred CchHHHHh-ccCCcEEEecCccCChHhhcCCCccccEEEEEecccC----HHHHHHHHHhcCCE
Confidence 011111 2457899999999999998766 22 234443422 34456677666543
No 185
>KOG3107 consensus Predicted haloacid dehalogenase-like hydrolase (eyes absent) [General function prediction only]
Probab=96.45 E-value=0.026 Score=45.27 Aligned_cols=94 Identities=18% Similarity=0.149 Sum_probs=68.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCcccccccceecCC-CCCcHHHHHHHHHHcCCCCCcEEEEeCCcccHHHHHHcCCeE
Q 032106 19 GIDVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFSS-WSHKTDHFQRIHSRTGVPFNSMLFFDDEDRNIDAVSKMGVTG 97 (147)
Q Consensus 19 g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~~~~~-~kp~~~~~~~~~~~~~~~~~~~v~VgDs~~Di~~a~~~Gi~~ 97 (147)
++.-+++|+...... -..+=.+||...|....++.. .-.|..+|++|..++|. .-..++|||+...-.+|+++.|.+
T Consensus 370 ncvnVlvTttqLipa-laKvLL~gLg~~fpiENIYSa~kiGKescFerI~~RFg~-K~~yvvIgdG~eee~aAK~ln~Pf 447 (468)
T KOG3107|consen 370 NCVNVLVTTTQLIPA-LAKVLLYGLGSSFPIENIYSATKIGKESCFERIQSRFGR-KVVYVVIGDGVEEEQAAKALNMPF 447 (468)
T ss_pred ceeEEEEeccchhHH-HHHHHHHhcCCcccchhhhhhhhccHHHHHHHHHHHhCC-ceEEEEecCcHHHHHHHHhhCCce
Confidence 456777885543222 223334677777876433333 33578899999999998 577899999999999999999999
Q ss_pred EEECCCCChHHHHHHHH
Q 032106 98 ILVGNGVNLGALRQGLT 114 (147)
Q Consensus 98 i~v~~~~~~~~~~~~l~ 114 (147)
+-+....+...+..+|+
T Consensus 448 wrI~~h~Dl~~l~~aL~ 464 (468)
T KOG3107|consen 448 WRISSHSDLDALYSALE 464 (468)
T ss_pred EeeccCccHHHHhhhcc
Confidence 99988777776666654
No 186
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=96.38 E-value=0.0056 Score=45.73 Aligned_cols=41 Identities=7% Similarity=0.069 Sum_probs=32.8
Q ss_pred CcHHHHHHHHHHcCC--CCCcEEEEeCCcccHHHHHHcCCeEE
Q 032106 58 HKTDHFQRIHSRTGV--PFNSMLFFDDEDRNIDAVSKMGVTGI 98 (147)
Q Consensus 58 p~~~~~~~~~~~~~~--~~~~~v~VgDs~~Di~~a~~~Gi~~i 98 (147)
.|....+.+++.+++ .+.++++|||+.+|+.+.+.+|+.++
T Consensus 181 sK~~al~~l~~~~~~~~~~~~~i~~GD~~nD~~ml~~ag~~v~ 223 (225)
T TIGR02461 181 DKGKAIKRLLDLYKLRPGAIESVGLGDSENDFPMFEVVDLAFL 223 (225)
T ss_pred CHHHHHHHHHHHhccccCcccEEEEcCCHHHHHHHHhCCCcEe
Confidence 345566677777765 66789999999999999999998754
No 187
>PLN03190 aminophospholipid translocase; Provisional
Probab=96.29 E-value=0.032 Score=51.06 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=31.2
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCc
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNI 43 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl 43 (147)
++-+|+.++++.|+++|+++.++|+-+ ...+..+....+|
T Consensus 726 ~lr~~v~~~I~~l~~agi~v~mlTGD~-~~tAi~IA~s~~L 765 (1178)
T PLN03190 726 KLQQGVPEAIESLRTAGIKVWVLTGDK-QETAISIGYSSKL 765 (1178)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCC-HHHHHHHHHHhCC
Confidence 578999999999999999999999554 5655555554433
No 188
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=96.27 E-value=0.012 Score=45.12 Aligned_cols=49 Identities=14% Similarity=0.213 Sum_probs=40.4
Q ss_pred CCCcHHHHHHHHHHcCCCCCcEEEEeCCcccHHHHHHc---CCeEEEECCCC
Q 032106 56 WSHKTDHFQRIHSRTGVPFNSMLFFDDEDRNIDAVSKM---GVTGILVGNGV 104 (147)
Q Consensus 56 ~kp~~~~~~~~~~~~~~~~~~~v~VgDs~~Di~~a~~~---Gi~~i~v~~~~ 104 (147)
.-.|...+..+++.+|+..+++++|||+.+|+.+.+.+ +..++.|+.+.
T Consensus 172 g~~Kg~al~~ll~~~~~~~~~v~~~GD~~nD~~mf~~~~~~~g~~vavg~a~ 223 (266)
T PRK10187 172 GTNKGEAIAAFMQEAPFAGRTPVFVGDDLTDEAGFAVVNRLGGISVKVGTGA 223 (266)
T ss_pred CCCHHHHHHHHHHhcCCCCCeEEEEcCCccHHHHHHHHHhcCCeEEEECCCC
Confidence 45788899999999999999999999999999988877 44556776543
No 189
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=96.23 E-value=0.016 Score=46.20 Aligned_cols=96 Identities=19% Similarity=0.269 Sum_probs=62.6
Q ss_pred hhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhc---Ccccccccce-------ecCC-C--------C---------
Q 032106 6 PHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKL---NIKSMFVAKE-------IFSS-W--------S--------- 57 (147)
Q Consensus 6 pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~---gl~~~f~~~~-------~~~~-~--------k--------- 57 (147)
|....+|+.|+++|.+++++||++ -..+..-++.+ ++.++||.+- .+.. . |
T Consensus 243 ~ql~~fl~kL~~~GKklFLiTNSP-ysFVd~GM~flvG~~WRdlFDVVIvqA~KP~Fftde~rPfR~~dek~~sl~wdkv 321 (510)
T KOG2470|consen 243 PQLLAFLRKLKDHGKKLFLITNSP-YSFVDKGMRFLVGDDWRDLFDVVIVQANKPEFFTDERRPFRKYDEKRGSLLWDKV 321 (510)
T ss_pred HHHHHHHHHHHHhcCcEEEEeCCc-hhhhhcCceeeeCccHHhhhheeEEecCCCcccccccCcchhhcccccchhhhhh
Confidence 567889999999999999999998 45555434332 2234565530 0000 0 0
Q ss_pred ----CcH----HHHHHHHHHcCCCCCcEEEEeCCcc-cHHHHH-HcCCeEEEECC
Q 032106 58 ----HKT----DHFQRIHSRTGVPFNSMLFFDDEDR-NIDAVS-KMGVTGILVGN 102 (147)
Q Consensus 58 ----p~~----~~~~~~~~~~~~~~~~~v~VgDs~~-Di~~a~-~~Gi~~i~v~~ 102 (147)
+.. ......++-.|....+++++||.+. |+.... ++||++-.+-.
T Consensus 322 ~klekgkiYy~G~l~~flelt~WrG~~VlYFGDHlySDLad~tlkhgWRTgAII~ 376 (510)
T KOG2470|consen 322 DKLEKGKIYYQGNLKSFLELTGWRGPRVLYFGDHLYSDLADLTLKHGWRTGAIIP 376 (510)
T ss_pred hhcccCceeeeccHHHHHHHhccCCCeeEEecCcchhhhhhhHhhcccccccchH
Confidence 000 1223344556778899999999988 888776 89999887743
No 190
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=96.22 E-value=0.01 Score=45.16 Aligned_cols=41 Identities=12% Similarity=0.218 Sum_probs=34.3
Q ss_pred CchhHHHHHHHHHHCCCeEEEEcCCCChH--HHHHHHHhcCcc
Q 032106 4 LYPHAKGILHALKDKGIDVAVASRSPSPD--IANTFLEKLNIK 44 (147)
Q Consensus 4 ~~pgv~~~L~~L~~~g~~l~i~S~~~~~~--~~~~~l~~~gl~ 44 (147)
++|++.++|+.|+++|++++++||+.... .....++.+|++
T Consensus 22 ~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~ 64 (257)
T TIGR01458 22 AVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFD 64 (257)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCC
Confidence 89999999999999999999999877553 345567778875
No 191
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=96.11 E-value=0.042 Score=42.33 Aligned_cols=98 Identities=12% Similarity=0.106 Sum_probs=58.9
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCCCh--HHHHHHHHhcCcccccccc--eecC-CCCC-----cHHHHHHHHHHcC
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVASRSPSP--DIANTFLEKLNIKSMFVAK--EIFS-SWSH-----KTDHFQRIHSRTG 71 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S~~~~~--~~~~~~l~~~gl~~~f~~~--~~~~-~~kp-----~~~~~~~~~~~~~ 71 (147)
..+.|++.++.+.|++.|++++++||+.+. .....-|.+.|+..+ +.. ...+ ..+. |.....++.+ -|
T Consensus 144 ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~kaGy~~~-~~LiLR~~~D~~~~~av~yKs~~R~~li~-eG 221 (275)
T TIGR01680 144 APALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKKAGYHTW-EKLILKDPQDNSAENAVEYKTAARAKLIQ-EG 221 (275)
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHHcCCCCc-ceeeecCCCCCccchhHHHHHHHHHHHHH-cC
Confidence 357899999999999999999999988742 223334566777543 211 0111 1111 2222223222 22
Q ss_pred CCCCcEEEEeCCcccHHHHHHcCCeEEEECCC
Q 032106 72 VPFNSMLFFDDEDRNIDAVSKMGVTGILVGNG 103 (147)
Q Consensus 72 ~~~~~~v~VgDs~~Di~~a~~~Gi~~i~v~~~ 103 (147)
. .=+..|||..+|+.+....+-++.-++++
T Consensus 222 Y--rIv~~iGDq~sDl~G~~~g~~RtFKLPNP 251 (275)
T TIGR01680 222 Y--NIVGIIGDQWNDLKGEHRGAIRSFKLPNP 251 (275)
T ss_pred c--eEEEEECCCHHhccCCCccCcceecCCCc
Confidence 2 33788999999997555323577766655
No 192
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=95.99 E-value=0.019 Score=43.81 Aligned_cols=45 Identities=29% Similarity=0.411 Sum_probs=38.2
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccc
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFV 48 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~ 48 (147)
...+++.++|+.|++.|++++++|++. ...+...++.+++..+|-
T Consensus 21 ~~~~~~~~ai~~l~~~Gi~~~iaTgR~-~~~~~~~~~~l~l~~~~i 65 (273)
T PRK00192 21 YSYEPAKPALKALKEKGIPVIPCTSKT-AAEVEVLRKELGLEDPFI 65 (273)
T ss_pred cCcHHHHHHHHHHHHCCCEEEEEcCCC-HHHHHHHHHHcCCCCCEE
Confidence 456889999999999999999999887 566688899999876653
No 193
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=95.92 E-value=0.1 Score=39.15 Aligned_cols=85 Identities=16% Similarity=0.140 Sum_probs=47.4
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChH--HHHHHHHh-cCcccccccceecCCCCCcHHHHHHHHHHcCCCCCcEEE
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPD--IANTFLEK-LNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLF 79 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~--~~~~~l~~-~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~ 79 (147)
.++|++.++|+.|+++|+++.++||+..+. .....+.. +|+.--.+ +.+.. ....-..+.++. ....+++
T Consensus 14 ~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~~~~~--~iits---~~~~~~~l~~~~--~~~~v~v 86 (236)
T TIGR01460 14 KPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVDVSPD--QIITS---GSVTKDLLRQRF--EGEKVYV 86 (236)
T ss_pred ccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCCCCHH--HeeeH---HHHHHHHHHHhC--CCCEEEE
Confidence 578999999999999999999999766222 22223444 67642222 22222 222222222222 2245777
Q ss_pred EeCCcccHHHHHHcCC
Q 032106 80 FDDEDRNIDAVSKMGV 95 (147)
Q Consensus 80 VgDs~~Di~~a~~~Gi 95 (147)
+|.. .-.+.++.+|+
T Consensus 87 ~G~~-~~~~~l~~~g~ 101 (236)
T TIGR01460 87 IGVG-ELRESLEGLGF 101 (236)
T ss_pred ECCH-HHHHHHHHcCC
Confidence 7753 33444555554
No 194
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=95.89 E-value=0.088 Score=45.47 Aligned_cols=46 Identities=9% Similarity=0.174 Sum_probs=41.0
Q ss_pred CCCCcHHHHHHHHHHcCCCCCcEEEE--eCCcccHHHHHHcCCeEEEE
Q 032106 55 SWSHKTDHFQRIHSRTGVPFNSMLFF--DDEDRNIDAVSKMGVTGILV 100 (147)
Q Consensus 55 ~~kp~~~~~~~~~~~~~~~~~~~v~V--gDs~~Di~~a~~~Gi~~i~v 100 (147)
..-.|...++.+++.+++..++++.| ||+.||+.+-+.+|..++.-
T Consensus 610 ~gvdKG~AL~~L~e~~gI~~~eViafalGDs~NDisMLe~Ag~gVAM~ 657 (694)
T PRK14502 610 GGNDKGKAIKILNELFRLNFGNIHTFGLGDSENDYSMLETVDSPILVQ 657 (694)
T ss_pred CCCCHHHHHHHHHHHhCCCccceEEEEcCCcHhhHHHHHhCCceEEEc
Confidence 35689999999999999998988888 99999999999999987654
No 195
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=95.86 E-value=0.071 Score=40.27 Aligned_cols=40 Identities=18% Similarity=0.221 Sum_probs=31.0
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCc
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNI 43 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl 43 (147)
-++.||+.++++.|.+. ..-+|+|.+. ...+++.+..+|+
T Consensus 82 a~lvPgA~etm~~l~~~-~tp~v~STSY-~qy~~r~a~~ig~ 121 (315)
T COG4030 82 AKLVPGAEETMATLQER-WTPVVISTSY-TQYLRRTASMIGV 121 (315)
T ss_pred cccCCChHHHHHHHhcc-CCceEEeccH-HHHHHHHHHhcCC
Confidence 46899999999999887 4555555355 6777888888887
No 196
>KOG3128 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.29 E-value=0.14 Score=39.07 Aligned_cols=118 Identities=13% Similarity=0.095 Sum_probs=70.6
Q ss_pred CchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCccccc----------cccee-cCCC-------CCcHHHHHH
Q 032106 4 LYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMF----------VAKEI-FSSW-------SHKTDHFQR 65 (147)
Q Consensus 4 ~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f----------~~~~~-~~~~-------kp~~~~~~~ 65 (147)
+..|+.+++..|.++++++.|.|.+- ..+++.++.+.....-+ +.... .+-. ......++.
T Consensus 139 lReg~~~ff~~L~~~~IP~~iFSAGi-gdiiEev~~q~~~~~pn~k~vSN~~~F~edg~l~gF~~~Lihtfnkn~~v~~~ 217 (298)
T KOG3128|consen 139 LREGYEEFFEALQAHEIPLLIFSAGI-GDIIEEVTRQKLVLHPNVKFVSNYMDFDEDGNLCGFSQPLIHTFNKNSSVLQN 217 (298)
T ss_pred HHHHHHHHHHHHHhCCCceEEEecch-HHHHHHHHHHHhccCccHHhhhhhhhhcccchhhhhhHHHHHHHccchHHHHh
Confidence 34688999999999999999999776 77777777765443211 11000 1111 112222333
Q ss_pred HHHHcC--CCCCcEEEEeCCcccHHHHHHc-CCeEEEECCCCChHHHHHHHHHHHHhhccc
Q 032106 66 IHSRTG--VPFNSMLFFDDEDRNIDAVSKM-GVTGILVGNGVNLGALRQGLTKFSQNWNTS 123 (147)
Q Consensus 66 ~~~~~~--~~~~~~v~VgDs~~Di~~a~~~-Gi~~i~v~~~~~~~~~~~~l~~~~~~~~~~ 123 (147)
....+. -....+++.||+..|+.+|--+ ++..++ .-|+..+..++.++++.+..++.
T Consensus 218 ~s~yf~~~~~~~nVillGdsigdl~ma~gv~~~~~iL-kig~l~d~vee~~~~ymd~ydIv 277 (298)
T KOG3128|consen 218 ESEYFHQLAGRVNVILLGDSIGDLHMADGVPRVGHIL-KIGYLNDSVEEALEKYMDSYDIV 277 (298)
T ss_pred hhHHHhhccCCceEEEeccccccchhhcCCcccccce-eeecccchHHHHHHHHHhhcceE
Confidence 333332 2457799999999999988654 332221 23333445555777887776543
No 197
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=95.28 E-value=0.054 Score=40.39 Aligned_cols=42 Identities=21% Similarity=0.247 Sum_probs=35.5
Q ss_pred CchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccc
Q 032106 4 LYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSM 46 (147)
Q Consensus 4 ~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~ 46 (147)
..|++.++|++|+++|++++++|++. ...+..+++.+|+..+
T Consensus 16 ~~~~~~~ai~~l~~~G~~~vi~TgR~-~~~~~~~~~~lg~~~~ 57 (225)
T TIGR02461 16 EPGPAREALEELKDLGFPIVFVSSKT-RAEQEYYREELGVEPP 57 (225)
T ss_pred CchHHHHHHHHHHHCCCEEEEEeCCC-HHHHHHHHHHcCCCCc
Confidence 45789999999999999999999887 5556778899998653
No 198
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=95.15 E-value=0.16 Score=39.35 Aligned_cols=81 Identities=16% Similarity=0.162 Sum_probs=62.6
Q ss_pred CchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccceecC-----------------------------
Q 032106 4 LYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFS----------------------------- 54 (147)
Q Consensus 4 ~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~~~~----------------------------- 54 (147)
..|.+.+.|..|++.|..+++=|.++ ++.+...++.++|.+||+.+-.-+
T Consensus 143 r~~~v~~sL~~Lk~~g~vLvLWSyG~-~eHV~~sl~~~~L~~~Fd~ii~~G~~~~~~~~~~~~d~~~~~~f~~~~FylDv 221 (297)
T PF05152_consen 143 RDPAVYDSLRELKEQGCVLVLWSYGN-REHVRHSLKELKLEGYFDIIICGGNKAGEYNSRVIVDRQYKVIFVSKPFYLDV 221 (297)
T ss_pred CChHHHHHHHHHHHcCCEEEEecCCC-HHHHHHHHHHhCCccccEEEEeCCccCCcCCccceeecccceEEeccceEEeC
Confidence 35889999999999999999999888 677788999999999997740000
Q ss_pred -C--CC-CcHHHHHHHHHHcCCCC-CcEEEEeCCcc
Q 032106 55 -S--WS-HKTDHFQRIHSRTGVPF-NSMLFFDDEDR 85 (147)
Q Consensus 55 -~--~k-p~~~~~~~~~~~~~~~~-~~~v~VgDs~~ 85 (147)
. .- ..|....+.+++.|+.. ..+-.|+|-..
T Consensus 222 ~~~~~LPKSPrVVL~yL~k~gvny~KtiTLVDDL~~ 257 (297)
T PF05152_consen 222 TNVNNLPKSPRVVLWYLRKKGVNYFKTITLVDDLKS 257 (297)
T ss_pred CcCCCCCCCCeehHHHHHHcCCceeeeEEEeccCcc
Confidence 0 01 24567778888999876 77888888765
No 199
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=95.14 E-value=0.064 Score=39.40 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=34.6
Q ss_pred CchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcc
Q 032106 4 LYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIK 44 (147)
Q Consensus 4 ~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~ 44 (147)
..+.+.++|+.|+++|++++++||+. ...++.+++.+++.
T Consensus 17 ~~~~~~~~l~~l~~~gi~~~i~TgR~-~~~~~~~~~~l~~~ 56 (221)
T TIGR02463 17 DWQPAAPWLTRLQEAGIPVILCTSKT-AAEVEYLQKALGLT 56 (221)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEcCCC-HHHHHHHHHHcCCC
Confidence 34558899999999999999999888 67778899999986
No 200
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=95.11 E-value=0.066 Score=43.30 Aligned_cols=119 Identities=17% Similarity=0.174 Sum_probs=75.5
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChHHHHHHHHh---cCcccccccceecC-------------------------------
Q 032106 9 KGILHALKDKGIDVAVASRSPSPDIANTFLEK---LNIKSMFVAKEIFS------------------------------- 54 (147)
Q Consensus 9 ~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~---~gl~~~f~~~~~~~------------------------------- 54 (147)
+-+|..+++.|.++.++||++ -......+.. .+...||+.+....
T Consensus 204 v~~l~~~r~sGKk~fl~Tns~-~~ytd~~mt~~~~~dW~~yfd~v~~~a~Kp~ff~e~~vlreV~t~~g~l~~g~~~~p~ 282 (424)
T KOG2469|consen 204 VPLLSMLRDSGKKTFLHTNSD-WDYTDIFMAFHYGFDWETYFDLVETRAAKPGFFHEGTVLREVEPQEGLLKNGDNTGPL 282 (424)
T ss_pred ccchHHHHhhccceEEeeccc-cchhhHHHHHHhCCCcceeEEEEEEeccCCccccccceeeeeccccccccccccCCcc
Confidence 338899999999999999887 4544554443 24556776532211
Q ss_pred --CCCCcHHHHHHHHHHcCCCCCcEEEEeCCcc-cHHHH-HHcCCeEEEECCCCChH--HHHHHHHHHHHhhccchhhHH
Q 032106 55 --SWSHKTDHFQRIHSRTGVPFNSMLFFDDEDR-NIDAV-SKMGVTGILVGNGVNLG--ALRQGLTKFSQNWNTSQKNKQ 128 (147)
Q Consensus 55 --~~kp~~~~~~~~~~~~~~~~~~~v~VgDs~~-Di~~a-~~~Gi~~i~v~~~~~~~--~~~~~l~~~~~~~~~~~~~~~ 128 (147)
...+.......++..++....++++|||..+ ||--. +.-|+.+++|......+ .|...-++|.+..+.+..-++
T Consensus 283 e~~~~ySggs~~~~~~~l~~~g~diLy~gdHi~~dvl~skk~~~wrt~lv~peL~~e~~v~~~~ke~~~el~~~~~~laD 362 (424)
T KOG2469|consen 283 EQGGVYSGGSLKTVETSMKVKGKDILYGGDHIWGDVLVSKKRRGWRTVLVAPELEREDLVLLDSKEEFIELLNWSSKLAD 362 (424)
T ss_pred hhcccCCcchHHHHHHHhcccccceeecccceeeeEEecceecceEEEEEehhhhhhhhhhccchHHHHHHhccchhhHh
Confidence 0233345566777778888899999999998 75444 55699999887654433 233333445555554433333
No 201
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=95.05 E-value=0.14 Score=40.28 Aligned_cols=87 Identities=10% Similarity=0.137 Sum_probs=56.7
Q ss_pred CCCchhHHHHHHHHHHC----CCeEEEEcCCC---ChHHHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHHcCCCC
Q 032106 2 PSLYPHAKGILHALKDK----GIDVAVASRSP---SPDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPF 74 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~----g~~l~i~S~~~---~~~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~ 74 (147)
..++||+.++|+.|+.+ |+++.++||+. ....++.+.+.+|+. ++..+.+.. .. .....+++++
T Consensus 15 ~~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~~--~~~~~i~~s---~~-~~~~ll~~~~--- 85 (321)
T TIGR01456 15 KKPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGVD--VSPLQVIQS---HS-PYKSLVNKYE--- 85 (321)
T ss_pred ccccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCCC--CCHHHHHhh---hH-HHHHHHHHcC---
Confidence 35699999999999998 99999999876 233444445778875 222122222 12 3344445543
Q ss_pred CcEEEEeCCcccHHHHHHcCCeEE
Q 032106 75 NSMLFFDDEDRNIDAVSKMGVTGI 98 (147)
Q Consensus 75 ~~~v~VgDs~~Di~~a~~~Gi~~i 98 (147)
..+++||.+- -.+.++.+|+..+
T Consensus 86 ~~v~viG~~~-~~~~l~~~G~~~v 108 (321)
T TIGR01456 86 KRILAVGTGS-VRGVAEGYGFQNV 108 (321)
T ss_pred CceEEEeChH-HHHHHHHcCCccc
Confidence 2688888764 4666778887755
No 202
>PLN02423 phosphomannomutase
Probab=94.95 E-value=0.054 Score=40.94 Aligned_cols=54 Identities=19% Similarity=0.244 Sum_probs=42.7
Q ss_pred eecCCCCCcHHHHHHHHHHcCCCCCcEEEEeC----CcccHHHHHHcCCeEEEECCCCChHHH
Q 032106 51 EIFSSWSHKTDHFQRIHSRTGVPFNSMLFFDD----EDRNIDAVSKMGVTGILVGNGVNLGAL 109 (147)
Q Consensus 51 ~~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgD----s~~Di~~a~~~Gi~~i~v~~~~~~~~~ 109 (147)
+.....-.|...++.++ ++++++.||| +.||+++.+.-|+.++.|..+...-++
T Consensus 182 Di~~~gvnKg~al~~L~-----~~~e~~aFGD~~~~~~ND~eMl~~~~~~~~~~~~~~~~~~~ 239 (245)
T PLN02423 182 DVFPQGWDKTYCLQFLE-----DFDEIHFFGDKTYEGGNDHEIFESERTIGHTVTSPDDTREQ 239 (245)
T ss_pred EEeeCCCCHHHHHHHhc-----CcCeEEEEeccCCCCCCcHHHHhCCCcceEEeCCHHHHHHH
Confidence 45555667787887777 8899999999 799999999889999999765443333
No 203
>PRK10976 putative hydrolase; Provisional
Probab=94.83 E-value=0.08 Score=40.02 Aligned_cols=43 Identities=30% Similarity=0.351 Sum_probs=36.2
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccc
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSM 46 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~ 46 (147)
.+-|...++|++|+++|++++++|++. ...+..+++.+++..+
T Consensus 19 ~is~~~~~ai~~l~~~G~~~~iaTGR~-~~~~~~~~~~l~~~~~ 61 (266)
T PRK10976 19 TLSPYAKETLKLLTARGIHFVFATGRH-HVDVGQIRDNLEIKSY 61 (266)
T ss_pred cCCHHHHHHHHHHHHCCCEEEEEcCCC-hHHHHHHHHhcCCCCe
Confidence 356789999999999999999999888 5555778888998755
No 204
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=94.72 E-value=0.051 Score=42.37 Aligned_cols=33 Identities=24% Similarity=0.605 Sum_probs=29.3
Q ss_pred CCCCchhHHHHHHHHHHCC-CeEEEEcCCCChHH
Q 032106 1 MPSLYPHAKGILHALKDKG-IDVAVASRSPSPDI 33 (147)
Q Consensus 1 ~p~~~pgv~~~L~~L~~~g-~~l~i~S~~~~~~~ 33 (147)
+|++||...++++.+++.| ++++|+||+..+.+
T Consensus 90 EPTLy~~L~elI~~~k~~g~~~tflvTNgslpdv 123 (296)
T COG0731 90 EPTLYPNLGELIEEIKKRGKKTTFLVTNGSLPDV 123 (296)
T ss_pred CcccccCHHHHHHHHHhcCCceEEEEeCCChHHH
Confidence 5999999999999999999 79999999985333
No 205
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=94.68 E-value=0.092 Score=39.63 Aligned_cols=43 Identities=14% Similarity=0.293 Sum_probs=36.0
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccc
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSM 46 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~ 46 (147)
.+.|...++|+.|+++|++++++|++. ...+...++.+++..+
T Consensus 20 ~i~~~~~~ai~~~~~~G~~~~iaTGR~-~~~~~~~~~~l~~~~~ 62 (272)
T PRK10530 20 TILPESLEALARAREAGYKVIIVTGRH-HVAIHPFYQALALDTP 62 (272)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEEcCCC-hHHHHHHHHhcCCCCC
Confidence 467889999999999999999999888 5555778888988653
No 206
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=94.52 E-value=0.45 Score=37.18 Aligned_cols=41 Identities=17% Similarity=0.320 Sum_probs=31.8
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHH---HHhcCcc
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTF---LEKLNIK 44 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~---l~~~gl~ 44 (147)
.+.||+.++|+.|+..|..+.++||+..... +.. .+.+|+.
T Consensus 38 ~~ipGs~e~l~~L~~~gK~i~fvTNNStksr-~~y~kK~~~lG~~ 81 (306)
T KOG2882|consen 38 KPIPGSPEALNLLKSLGKQIIFVTNNSTKSR-EQYMKKFAKLGFN 81 (306)
T ss_pred CCCCChHHHHHHHHHcCCcEEEEeCCCcchH-HHHHHHHHHhCcc
Confidence 5789999999999999999999998874443 333 3345654
No 207
>KOG0206 consensus P-type ATPase [General function prediction only]
Probab=94.40 E-value=0.12 Score=46.96 Aligned_cols=36 Identities=17% Similarity=0.124 Sum_probs=28.0
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHH
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLE 39 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~ 39 (147)
++-.||+++|+.|+++|++++++|+-. .+.+-.+.-
T Consensus 651 kLQdgVPetI~~L~~AGIKIWVLTGDK-~ETAiNIg~ 686 (1151)
T KOG0206|consen 651 KLQDGVPETIAKLAQAGIKIWVLTGDK-QETAINIGY 686 (1151)
T ss_pred hhccCchHHHHHHHHcCCEEEEEcCcH-HHHHHHHHH
Confidence 577899999999999999999999554 444434333
No 208
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=94.27 E-value=0.13 Score=38.71 Aligned_cols=42 Identities=19% Similarity=0.264 Sum_probs=35.6
Q ss_pred CchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccc
Q 032106 4 LYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSM 46 (147)
Q Consensus 4 ~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~ 46 (147)
..+.+.++|+.|+++|++++++|++. ...+..+++.+|+..+
T Consensus 17 ~~~~~~~~i~~l~~~g~~~~~~TgR~-~~~~~~~~~~~~~~~~ 58 (256)
T TIGR01486 17 DWGPAKEVLERLQELGIPVIPCTSKT-AAEVEYLRKELGLEDP 58 (256)
T ss_pred CchHHHHHHHHHHHCCCeEEEEcCCC-HHHHHHHHHHcCCCCc
Confidence 45678999999999999999999887 6667888999998654
No 209
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=93.98 E-value=0.21 Score=39.38 Aligned_cols=36 Identities=19% Similarity=0.538 Sum_probs=30.9
Q ss_pred CCCCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHH
Q 032106 1 MPSLYPHAKGILHALKDKGIDVAVASRSPSPDIANT 36 (147)
Q Consensus 1 ~p~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~ 36 (147)
+|.++|.+.++++.+++.|+.++|.||+..++.++.
T Consensus 140 EPlL~p~l~eli~~~k~~Gi~~~L~TNG~~~e~l~~ 175 (322)
T PRK13762 140 EPTLYPYLPELIEEFHKRGFTTFLVTNGTRPDVLEK 175 (322)
T ss_pred cccchhhHHHHHHHHHHcCCCEEEECCCCCHHHHHH
Confidence 488999999999999999999999999976554443
No 210
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=93.79 E-value=0.18 Score=39.41 Aligned_cols=43 Identities=21% Similarity=0.283 Sum_probs=36.2
Q ss_pred CchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCccccc
Q 032106 4 LYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMF 47 (147)
Q Consensus 4 ~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f 47 (147)
.++.+.++|+.|+++|++++++|++. ...+..+.+.+++..+|
T Consensus 19 ~~~~a~~aL~~Lk~~GI~vVlaTGRt-~~ev~~l~~~Lgl~~p~ 61 (302)
T PRK12702 19 SYGAARQALAALERRSIPLVLYSLRT-RAQLEHLCRQLRLEHPF 61 (302)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEcCCC-HHHHHHHHHHhCCCCeE
Confidence 56778999999999999999999887 55567889999987644
No 211
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=93.50 E-value=0.2 Score=37.84 Aligned_cols=41 Identities=22% Similarity=0.479 Sum_probs=34.7
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcc
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIK 44 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~ 44 (147)
.+-|...++|++|+++|++++++|++. ...+..+++.+++.
T Consensus 20 ~i~~~~~~ai~~l~~~G~~~~iaTGR~-~~~~~~~~~~l~~~ 60 (270)
T PRK10513 20 TISPAVKQAIAAARAKGVNVVLTTGRP-YAGVHRYLKELHME 60 (270)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEecCCC-hHHHHHHHHHhCCC
Confidence 356789999999999999999999888 55557788888875
No 212
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=93.43 E-value=0.23 Score=37.86 Aligned_cols=40 Identities=15% Similarity=0.190 Sum_probs=34.4
Q ss_pred CchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcc
Q 032106 4 LYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIK 44 (147)
Q Consensus 4 ~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~ 44 (147)
..+.+.++|++|+++|++++++|++. ...+...++.+++.
T Consensus 25 i~~~~~~ai~~l~~~Gi~~viaTGR~-~~~i~~~~~~l~~~ 64 (271)
T PRK03669 25 DWQPAAPWLTRLREAQVPVILCSSKT-AAEMLPLQQTLGLQ 64 (271)
T ss_pred CcHHHHHHHHHHHHcCCeEEEEcCCC-HHHHHHHHHHhCCC
Confidence 34678899999999999999999888 56668889999985
No 213
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=93.13 E-value=0.32 Score=34.82 Aligned_cols=98 Identities=14% Similarity=0.159 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHHcCCCCCcEEEEeCCccc
Q 032106 7 HAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLFFDDEDRN 86 (147)
Q Consensus 7 gv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgDs~~D 86 (147)
++..+|..++..+-++++++..+.......+.+.+|+.=.+ ..+ .+++-++.+++++.-..- -++||+...
T Consensus 65 Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~~i~~---~~~----~~~~e~~~~i~~~~~~G~-~viVGg~~~- 135 (176)
T PF06506_consen 65 DILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLGVDIKI---YPY----DSEEEIEAAIKQAKAEGV-DVIVGGGVV- 135 (176)
T ss_dssp HHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT-EEEE---EEE----SSHHHHHHHHHHHHHTT---EEEESHHH-
T ss_pred HHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhCCceEE---EEE----CCHHHHHHHHHHHHHcCC-cEEECCHHH-
Confidence 34555566666688999999655444456677777763111 111 234445555555422222 488999975
Q ss_pred HHHHHHcCCeEEEECCCCChHHHHHHHHH
Q 032106 87 IDAVSKMGVTGILVGNGVNLGALRQGLTK 115 (147)
Q Consensus 87 i~~a~~~Gi~~i~v~~~~~~~~~~~~l~~ 115 (147)
...|++.|+.++.+..+. ++...++.+
T Consensus 136 ~~~A~~~gl~~v~i~sg~--esi~~Al~e 162 (176)
T PF06506_consen 136 CRLARKLGLPGVLIESGE--ESIRRALEE 162 (176)
T ss_dssp HHHHHHTTSEEEESS--H--HHHHHHHHH
T ss_pred HHHHHHcCCcEEEEEecH--HHHHHHHHH
Confidence 788999999999996643 344444443
No 214
>PTZ00174 phosphomannomutase; Provisional
Probab=93.00 E-value=0.44 Score=35.87 Aligned_cols=47 Identities=19% Similarity=0.336 Sum_probs=39.6
Q ss_pred eecCCCCCcHHHHHHHHHHcCCCCCcEEEEeC----CcccHHHHHHcCCeEEEEC
Q 032106 51 EIFSSWSHKTDHFQRIHSRTGVPFNSMLFFDD----EDRNIDAVSKMGVTGILVG 101 (147)
Q Consensus 51 ~~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgD----s~~Di~~a~~~Gi~~i~v~ 101 (147)
+.....-.|...++.++++ +++++.||| +.||+++-+.++...+.|.
T Consensus 181 eI~~~gvsKg~al~~L~~~----~~eviafGD~~~~~~NDieMl~~~~~~g~~v~ 231 (247)
T PTZ00174 181 DVFPKGWDKTYCLRHLEND----FKEIHFFGDKTFEGGNDYEIYNDPRTIGHSVK 231 (247)
T ss_pred EeeeCCCcHHHHHHHHHhh----hhhEEEEcccCCCCCCcHhhhhcCCCceEEeC
Confidence 4555566788899999888 599999999 8999999998888778886
No 215
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=92.73 E-value=0.52 Score=41.76 Aligned_cols=92 Identities=13% Similarity=0.130 Sum_probs=62.7
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccc---ccc--------------------ceecCCCCCc
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSM---FVA--------------------KEIFSSWSHK 59 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~---f~~--------------------~~~~~~~kp~ 59 (147)
...||++++++.++..|+.+-.+|+.+ ...++.+....|+..- |-. +...+.+.|.
T Consensus 647 PvRPgV~~AV~~Cq~AGItVRMVTGDN-I~TAkAIA~eCGILt~~~d~~~lEG~eFr~~s~ee~~~i~pkl~VlARSSP~ 725 (1034)
T KOG0204|consen 647 PVRPGVPEAVQLCQRAGITVRMVTGDN-INTAKAIARECGILTPGGDFLALEGKEFRELSQEERDKIWPKLRVLARSSPN 725 (1034)
T ss_pred CCCCCcHHHHHHHHHcCcEEEEEeCCc-HHHHHHHHHHcccccCCCccceecchhhhhcCHHHHHhhhhhheeeecCCCc
Confidence 357999999999999999999999555 8888999998988532 111 0222223332
Q ss_pred HH-HHHHHHHHcCCCCCcEEEEeCCcccHHHHHHcCCeEE
Q 032106 60 TD-HFQRIHSRTGVPFNSMLFFDDEDRNIDAVSKMGVTGI 98 (147)
Q Consensus 60 ~~-~~~~~~~~~~~~~~~~v~VgDs~~Di~~a~~~Gi~~i 98 (147)
-. .+-+.+++. .+=+.+-||+.+|-.+-+++.+...
T Consensus 726 DK~lLVk~L~~~---g~VVAVTGDGTNDaPALkeADVGlA 762 (1034)
T KOG0204|consen 726 DKHLLVKGLIKQ---GEVVAVTGDGTNDAPALKEADVGLA 762 (1034)
T ss_pred hHHHHHHHHHhc---CcEEEEecCCCCCchhhhhcccchh
Confidence 22 222223322 2446677999999999999988644
No 216
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=92.68 E-value=2.2 Score=36.07 Aligned_cols=97 Identities=12% Similarity=0.219 Sum_probs=61.1
Q ss_pred hHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccceecCCCCCcHHHHHHHH---HHcCCCCCcEEEEeCC
Q 032106 7 HAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIH---SRTGVPFNSMLFFDDE 83 (147)
Q Consensus 7 gv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~---~~~~~~~~~~v~VgDs 83 (147)
++..+|...++.+-+++|++-.+....++.+...+++. +.. ..+. ..+-....+ ++-|. -++|||.
T Consensus 85 Dil~al~~a~~~~~~ia~vg~~~~~~~~~~~~~ll~~~--i~~-~~~~----~~~e~~~~~~~l~~~G~----~~viG~~ 153 (526)
T TIGR02329 85 DVMQALARARRIASSIGVVTHQDTPPALRRFQAAFNLD--IVQ-RSYV----TEEDARSCVNDLRARGI----GAVVGAG 153 (526)
T ss_pred hHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCc--eEE-EEec----CHHHHHHHHHHHHHCCC----CEEECCh
Confidence 45666777778788999999666556667777777765 222 1111 222233333 33454 4778999
Q ss_pred cccHHHHHHcCCeEEEECCCCChHHHHHHHHHHHH
Q 032106 84 DRNIDAVSKMGVTGILVGNGVNLGALRQGLTKFSQ 118 (147)
Q Consensus 84 ~~Di~~a~~~Gi~~i~v~~~~~~~~~~~~l~~~~~ 118 (147)
.. ...|+++|+..+++..+ +++..++..-.+
T Consensus 154 ~~-~~~A~~~gl~~ili~s~---esi~~a~~~A~~ 184 (526)
T TIGR02329 154 LI-TDLAEQAGLHGVFLYSA---DSVRQAFDDALD 184 (526)
T ss_pred HH-HHHHHHcCCceEEEecH---HHHHHHHHHHHH
Confidence 66 67789999999999774 444444444433
No 217
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=92.56 E-value=0.46 Score=32.42 Aligned_cols=61 Identities=11% Similarity=0.134 Sum_probs=38.6
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHHcCCCCCcEE
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSML 78 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v 78 (147)
.+.+++.++|+.|++.|+.++++|+++.... ....|. +.. -.-......+.+.+++.++++
T Consensus 24 ~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~----~~n~~~---i~~--------~~~~~t~~wL~k~~ipYd~l~ 84 (126)
T TIGR01689 24 APILAVIEKLRHYKALGFEIVISSSRNMRTY----EGNVGK---INI--------HTLPIIILWLNQHNVPYDEIY 84 (126)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEECCCCchhh----hccccc---cch--------hhHHHHHHHHHHcCCCCceEE
Confidence 3668999999999999999999997763221 122222 111 123344455667777776655
No 218
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=92.41 E-value=1.2 Score=32.62 Aligned_cols=112 Identities=13% Similarity=0.102 Sum_probs=65.0
Q ss_pred CchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccc--ccc--c-eec----------C--CCCCcHHHHHHH
Q 032106 4 LYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSM--FVA--K-EIF----------S--SWSHKTDHFQRI 66 (147)
Q Consensus 4 ~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~--f~~--~-~~~----------~--~~kp~~~~~~~~ 66 (147)
.-|++.++|+.+.+. +.++|-|.+. ...++.++..+++... +.. . +.+ + ..|+- ..+
T Consensus 46 kRP~l~eFL~~~~~~-feIvVwTAa~-~~ya~~~l~~l~~~~~~~~~i~~~ld~~~~~~~~~~~~g~~~vKdL----~~l 119 (195)
T TIGR02245 46 MRPYLHEFLTSAYED-YDIVIWSATS-MKWIEIKMTELGVLTNPNYKITFLLDSTAMITVHTPRRGKFDVKPL----GVI 119 (195)
T ss_pred eCCCHHHHHHHHHhC-CEEEEEecCC-HHHHHHHHHHhcccCCccceEEEEeccccceeeEeeccCcEEEeec----HHh
Confidence 359999999999885 9999999776 7788899998876321 100 0 000 1 02221 112
Q ss_pred HHHcCC--CCCcEEEEeCCcccHHHHHHcCCeEEEECC---CCChHHHHHHHHHHHHhhc
Q 032106 67 HSRTGV--PFNSMLFFDDEDRNIDAVSKMGVTGILVGN---GVNLGALRQGLTKFSQNWN 121 (147)
Q Consensus 67 ~~~~~~--~~~~~v~VgDs~~Di~~a~~~Gi~~i~v~~---~~~~~~~~~~l~~~~~~~~ 121 (147)
-.++|. +.+++|+|+|++.....--..|+..-.... +...+.....+..|.+..+
T Consensus 120 w~~l~~~~~~~ntiiVDd~p~~~~~~P~N~i~I~~f~~~~~~~~~D~eL~~L~~yL~~la 179 (195)
T TIGR02245 120 WALLPEFYSMKNTIMFDDLRRNFLMNPQNGLKIRPFKKAHANRGTDQELLKLTQYLKTIA 179 (195)
T ss_pred hhhcccCCCcccEEEEeCCHHHHhcCCCCccccCCccccCCCCcccHHHHHHHHHHHHHh
Confidence 224543 668999999998865543334554332221 1122323334556666654
No 219
>KOG0209 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=92.11 E-value=0.56 Score=41.58 Aligned_cols=42 Identities=19% Similarity=0.279 Sum_probs=34.8
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCccc
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKS 45 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~ 45 (147)
.+-|+++..|+.|++.++++..+|+-+ +..+-.+.+.+|+-.
T Consensus 675 PlK~Ds~~~I~el~~SSH~vvMITGDn-pLTAchVak~v~iv~ 716 (1160)
T KOG0209|consen 675 PLKPDSKKTIKELNNSSHRVVMITGDN-PLTACHVAKEVGIVE 716 (1160)
T ss_pred CCCccHHHHHHHHhccCceEEEEeCCC-ccchheehheeeeec
Confidence 356899999999999999999999544 887778888887643
No 220
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=90.93 E-value=4.5 Score=34.31 Aligned_cols=98 Identities=12% Similarity=0.167 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccceecCCCCCcHHHHHHHH---HHcCCCCCcEEEEeCC
Q 032106 7 HAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIH---SRTGVPFNSMLFFDDE 83 (147)
Q Consensus 7 gv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~---~~~~~~~~~~v~VgDs 83 (147)
++..+|...++.+-+++|++-.+....++.+...+++. +.. ..+ -..+-....+ +..|+ -++|||.
T Consensus 95 Dil~al~~a~~~~~~iavv~~~~~~~~~~~~~~~l~~~--i~~-~~~----~~~~e~~~~v~~lk~~G~----~~vvG~~ 163 (538)
T PRK15424 95 DVMQALARARKLTSSIGVVTYQETIPALVAFQKTFNLR--IEQ-RSY----VTEEDARGQINELKANGI----EAVVGAG 163 (538)
T ss_pred HHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCc--eEE-EEe----cCHHHHHHHHHHHHHCCC----CEEEcCc
Confidence 45667777788888999999665555666777777765 222 111 1222233333 34454 3778997
Q ss_pred cccHHHHHHcCCeEEEECCCCChHHHHHHHHHHHHh
Q 032106 84 DRNIDAVSKMGVTGILVGNGVNLGALRQGLTKFSQN 119 (147)
Q Consensus 84 ~~Di~~a~~~Gi~~i~v~~~~~~~~~~~~l~~~~~~ 119 (147)
.. ...|.++|+..+++..+ +++..++++-.+.
T Consensus 164 ~~-~~~A~~~g~~g~~~~s~---e~i~~a~~~A~~~ 195 (538)
T PRK15424 164 LI-TDLAEEAGMTGIFIYSA---ATVRQAFEDALDM 195 (538)
T ss_pred hH-HHHHHHhCCceEEecCH---HHHHHHHHHHHHH
Confidence 77 78899999999999753 5555555554443
No 221
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=90.88 E-value=2.1 Score=34.43 Aligned_cols=44 Identities=18% Similarity=0.241 Sum_probs=30.6
Q ss_pred CCCCchhHHHHHHHHHHC-CCe-EEEEcCCCCh-HHHHHHHHhcCccc
Q 032106 1 MPSLYPHAKGILHALKDK-GID-VAVASRSPSP-DIANTFLEKLNIKS 45 (147)
Q Consensus 1 ~p~~~pgv~~~L~~L~~~-g~~-l~i~S~~~~~-~~~~~~l~~~gl~~ 45 (147)
+|.+.|++.++++.+++. |+. +.|.||+..- ..+ ..+...|++.
T Consensus 116 EPllr~dl~eli~~l~~~~gi~~i~itTNG~lL~~~~-~~L~~aGld~ 162 (373)
T PLN02951 116 EPTLRKDIEDICLQLSSLKGLKTLAMTTNGITLSRKL-PRLKEAGLTS 162 (373)
T ss_pred CCcchhhHHHHHHHHHhcCCCceEEEeeCcchHHHHH-HHHHhCCCCe
Confidence 488899999999999986 874 8889988521 222 2344456654
No 222
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=90.34 E-value=0.92 Score=32.70 Aligned_cols=39 Identities=21% Similarity=0.366 Sum_probs=32.3
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcC
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLN 42 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~g 42 (147)
.+-|.+.++|+.|++.|++++++|++. ...+..+++.++
T Consensus 17 ~~~~~~~~~l~~l~~~g~~~~i~TGR~-~~~~~~~~~~~~ 55 (204)
T TIGR01484 17 ELSPETIEALERLREAGVKVVLVTGRS-LAEIKELLKQLP 55 (204)
T ss_pred cCCHHHHHHHHHHHHCCCEEEEECCCC-HHHHHHHHHhCC
Confidence 466899999999999999999999887 566677777644
No 223
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=90.15 E-value=5.9 Score=30.42 Aligned_cols=96 Identities=20% Similarity=0.275 Sum_probs=70.7
Q ss_pred CCchhHHHHHH---HHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccceecC--CCCCcHHHHHHHHHHcCCCCCcE
Q 032106 3 SLYPHAKGILH---ALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFS--SWSHKTDHFQRIHSRTGVPFNSM 77 (147)
Q Consensus 3 ~~~pgv~~~L~---~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~~~~--~~kp~~~~~~~~~~~~~~~~~~~ 77 (147)
.++|+..++|+ .|-+.|+.|...++.+ +..+++ |+..|-.-.+.....++ ..-.++..++.+++...+ -
T Consensus 118 ~LlPD~~etl~Aae~Lv~eGF~VlPY~~~D-~v~a~r-Led~Gc~aVMPlgsPIGSg~Gl~n~~~l~~i~e~~~v----p 191 (267)
T CHL00162 118 YLLPDPIGTLKAAEFLVKKGFTVLPYINAD-PMLAKH-LEDIGCATVMPLGSPIGSGQGLQNLLNLQIIIENAKI----P 191 (267)
T ss_pred ccCCChHHHHHHHHHHHHCCCEEeecCCCC-HHHHHH-HHHcCCeEEeeccCcccCCCCCCCHHHHHHHHHcCCC----c
Confidence 56777777775 5668899999999666 777644 77788766555543333 345688899999887654 4
Q ss_pred EEEeCCc---ccHHHHHHcCCeEEEECCCC
Q 032106 78 LFFDDED---RNIDAVSKMGVTGILVGNGV 104 (147)
Q Consensus 78 v~VgDs~---~Di~~a~~~Gi~~i~v~~~~ 104 (147)
|+||-+. .|+..|-++|...+++..+.
T Consensus 192 VivdAGIgt~sDa~~AmElGaDgVL~nSaI 221 (267)
T CHL00162 192 VIIDAGIGTPSEASQAMELGASGVLLNTAV 221 (267)
T ss_pred EEEeCCcCCHHHHHHHHHcCCCEEeeccee
Confidence 7777764 48999999999999998764
No 224
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=90.03 E-value=3.1 Score=32.66 Aligned_cols=30 Identities=20% Similarity=0.203 Sum_probs=27.4
Q ss_pred CCCCchhHHHHHHHHHHCCCeEEEEcCCCC
Q 032106 1 MPSLYPHAKGILHALKDKGIDVAVASRSPS 30 (147)
Q Consensus 1 ~p~~~pgv~~~L~~L~~~g~~l~i~S~~~~ 30 (147)
+|-+.|++.++++.++++|..+.++||+..
T Consensus 82 EPLL~pdl~eiv~~~~~~g~~v~l~TNG~l 111 (318)
T TIGR03470 82 EPLLHPEIDEIVRGLVARKKFVYLCTNALL 111 (318)
T ss_pred cccccccHHHHHHHHHHcCCeEEEecCcee
Confidence 588999999999999999999999999863
No 225
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=89.66 E-value=6.6 Score=29.84 Aligned_cols=107 Identities=18% Similarity=0.251 Sum_probs=68.2
Q ss_pred CCchhHHHHHH---HHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccceecC--CCCCcHHHHHHHHHHcCCCCCcE
Q 032106 3 SLYPHAKGILH---ALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFS--SWSHKTDHFQRIHSRTGVPFNSM 77 (147)
Q Consensus 3 ~~~pgv~~~L~---~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~~~~--~~kp~~~~~~~~~~~~~~~~~~~ 77 (147)
.++|+..++|+ .|-+.|+.|.-.++.+ +..+++ |+..|-.-.+.....++ ..-.++..++.++++.+++
T Consensus 104 ~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D-~v~akr-L~d~GcaavMPlgsPIGSg~Gi~n~~~l~~i~~~~~vP---- 177 (247)
T PF05690_consen 104 TLLPDPIETLKAAEILVKEGFVVLPYCTDD-PVLAKR-LEDAGCAAVMPLGSPIGSGRGIQNPYNLRIIIERADVP---- 177 (247)
T ss_dssp T--B-HHHHHHHHHHHHHTT-EEEEEE-S--HHHHHH-HHHTT-SEBEEBSSSTTT---SSTHHHHHHHHHHGSSS----
T ss_pred CcCCChhHHHHHHHHHHHCCCEEeecCCCC-HHHHHH-HHHCCCCEEEecccccccCcCCCCHHHHHHHHHhcCCc----
Confidence 56788877775 5668899999999665 777644 77788766665543332 2446789999999999774
Q ss_pred EEEeCC---cccHHHHHHcCCeEEEECCC----CChHHHHHHHHH
Q 032106 78 LFFDDE---DRNIDAVSKMGVTGILVGNG----VNLGALRQGLTK 115 (147)
Q Consensus 78 v~VgDs---~~Di~~a~~~Gi~~i~v~~~----~~~~~~~~~l~~ 115 (147)
|+||-+ +.|...|-++|...++++.. .++-.+.+++..
T Consensus 178 vIvDAGiG~pSdaa~AMElG~daVLvNTAiA~A~dPv~MA~Af~~ 222 (247)
T PF05690_consen 178 VIVDAGIGTPSDAAQAMELGADAVLVNTAIAKAKDPVAMARAFKL 222 (247)
T ss_dssp BEEES---SHHHHHHHHHTT-SEEEESHHHHTSSSHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHcCCceeehhhHHhccCCHHHHHHHHHH
Confidence 667765 45888899999999999853 334445444443
No 226
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=89.53 E-value=2.6 Score=29.87 Aligned_cols=91 Identities=15% Similarity=0.262 Sum_probs=55.4
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCC--hHHHHHHHHhc-----Cccc---ccc------cc--eecCCCCCcHHHHH
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPS--PDIANTFLEKL-----NIKS---MFV------AK--EIFSSWSHKTDHFQ 64 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~--~~~~~~~l~~~-----gl~~---~f~------~~--~~~~~~kp~~~~~~ 64 (147)
...||+.++...++++|+++.-+|+++. ....+..|... +|.. +|. .. +.+ .++++.|+
T Consensus 27 ~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~~q~~~~lP~Gpv~~sP~~l~~al~rEvi---~~~p~~fK 103 (157)
T PF08235_consen 27 WTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQHQQQGHNLPDGPVLLSPDSLFSALHREVI---SKDPEEFK 103 (157)
T ss_pred hhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHHHhCCccCCCCCEEECCcchhhhhhcccc---ccChHHHH
Confidence 3579999999999999999999997761 22333455555 3322 111 10 121 23444443
Q ss_pred -----HHHHHcC-CCCCcEEEEeCCcccHHHHHHcCCe
Q 032106 65 -----RIHSRTG-VPFNSMLFFDDEDRNIDAVSKMGVT 96 (147)
Q Consensus 65 -----~~~~~~~-~~~~~~v~VgDs~~Di~~a~~~Gi~ 96 (147)
.+...+. ....=..-+|++..|+.+=+++|+.
T Consensus 104 ~~~L~~l~~~f~~~~~pf~agfGN~~tDv~aY~~vGip 141 (157)
T PF08235_consen 104 IACLRDLRALFPPDGNPFYAGFGNRSTDVIAYKAVGIP 141 (157)
T ss_pred HHHHHHHHHhcCCCCCeEEEecCCcHHHHHHHHHcCCC
Confidence 3333332 1112245589999999999999994
No 227
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=89.25 E-value=2.1 Score=34.05 Aligned_cols=82 Identities=20% Similarity=0.186 Sum_probs=51.8
Q ss_pred CCchhHHHHHHHHHHCC-CeEEEEcCCCChHHHHHHHHhcCcccccccc-------------eecCCCCCcHHHHHHHHH
Q 032106 3 SLYPHAKGILHALKDKG-IDVAVASRSPSPDIANTFLEKLNIKSMFVAK-------------EIFSSWSHKTDHFQRIHS 68 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g-~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~-------------~~~~~~kp~~~~~~~~~~ 68 (147)
+++||+..+.+.|.+.| .+++-+||++ -. ....|+++==.+-|..+ -.......|...+..+++
T Consensus 196 ~~ipGV~~~yr~l~~~~~apvfYvSnSP-w~-~f~~L~efi~~~~~P~GPl~L~~~g~~~~~i~~sga~rK~~~l~nil~ 273 (373)
T COG4850 196 QVIPGVSAWYRALTNLGDAPVFYVSNSP-WQ-LFPTLQEFITNRNFPYGPLLLRRWGGVLDNIIESGAARKGQSLRNILR 273 (373)
T ss_pred CCCCCHHHHHHHHHhcCCCCeEEecCCh-hH-hHHHHHHHHhcCCCCCCchhHhhcCCcccccccchhhhcccHHHHHHH
Confidence 68999999999999998 8999999886 23 23444443111112111 011113345666676777
Q ss_pred HcCCCCCcEEEEeCCc-ccHH
Q 032106 69 RTGVPFNSMLFFDDED-RNID 88 (147)
Q Consensus 69 ~~~~~~~~~v~VgDs~-~Di~ 88 (147)
+++- ...+.|||+- .|.+
T Consensus 274 ~~p~--~kfvLVGDsGE~Dpe 292 (373)
T COG4850 274 RYPD--RKFVLVGDSGEHDPE 292 (373)
T ss_pred hCCC--ceEEEecCCCCcCHH
Confidence 7653 5689999984 4754
No 228
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=88.83 E-value=2.2 Score=38.13 Aligned_cols=39 Identities=18% Similarity=0.138 Sum_probs=32.6
Q ss_pred CCCcHHHHHHHHH---HcCCCCCcEEEEeCCcccHHHHHHcC
Q 032106 56 WSHKTDHFQRIHS---RTGVPFNSMLFFDDEDRNIDAVSKMG 94 (147)
Q Consensus 56 ~kp~~~~~~~~~~---~~~~~~~~~v~VgDs~~Di~~a~~~G 94 (147)
.-.|....+.+++ .+|..++.+++|||..+|..+.+.++
T Consensus 760 gvnKG~Al~~Ll~~~~~~g~~~d~vl~~GDD~nDedMF~~~~ 801 (854)
T PLN02205 760 GVSKGLVAKRLLSIMQERGMLPDFVLCIGDDRSDEDMFEVIT 801 (854)
T ss_pred CCCHHHHHHHHHHHHHhcCCCcccEEEEcCCccHHHHHHHhh
Confidence 5567888888875 46889999999999999999888775
No 229
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=88.75 E-value=1.3 Score=31.80 Aligned_cols=84 Identities=13% Similarity=0.334 Sum_probs=49.2
Q ss_pred CCCCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHHcCCCCCcEEEE
Q 032106 1 MPSLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLFF 80 (147)
Q Consensus 1 ~p~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~V 80 (147)
+|.+.|.+.++++.+++.|+.+.+.||+.....+..+++ .|+..++.. .+.. ..+.+..+. |......
T Consensus 72 EPll~~~l~~li~~~~~~g~~v~i~TNg~~~~~l~~l~~-~g~~~~v~i--sl~~---~~~~~~~~~---g~~~~~~--- 139 (191)
T TIGR02495 72 EPTLQAGLPDFLRKVRELGFEVKLDTNGSNPRVLEELLE-EGLVDYVAM--DVKA---PPEKYPELY---GLEKNGS--- 139 (191)
T ss_pred cccCcHhHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHh-cCCCcEEEE--eccC---ChHHHHHHH---CCCCchH---
Confidence 478889999999999999999999999975554444333 453233221 1111 233444433 3221100
Q ss_pred eCCcccHHHHHHcCCe
Q 032106 81 DDEDRNIDAVSKMGVT 96 (147)
Q Consensus 81 gDs~~Di~~a~~~Gi~ 96 (147)
.+....++.+++.|+.
T Consensus 140 ~~~~~~i~~l~~~gi~ 155 (191)
T TIGR02495 140 NNILKSLEILLRSGIP 155 (191)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 2334567777777764
No 230
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=88.71 E-value=8.4 Score=30.60 Aligned_cols=97 Identities=19% Similarity=0.231 Sum_probs=67.3
Q ss_pred CCCchhHHHHHHHHHHC---CCeEEEEcCCCChHHHHHHHHhcCcccccccceecCC--CCCcHHHHHHHHHHcCCCCCc
Q 032106 2 PSLYPHAKGILHALKDK---GIDVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFSS--WSHKTDHFQRIHSRTGVPFNS 76 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~---g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~~~~~--~kp~~~~~~~~~~~~~~~~~~ 76 (147)
+.++|+..++++..+.. |+.+.++.+.+ +..++. +..+|-.-.....+.++. +-.+++.++.+.+... -
T Consensus 177 ~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d-~~~a~~-l~~~g~~avmPl~~pIGsg~gv~~p~~i~~~~e~~~----v 250 (326)
T PRK11840 177 KTLYPDMVETLKATEILVKEGFQVMVYCSDD-PIAAKR-LEDAGAVAVMPLGAPIGSGLGIQNPYTIRLIVEGAT----V 250 (326)
T ss_pred CCcccCHHHHHHHHHHHHHCCCEEEEEeCCC-HHHHHH-HHhcCCEEEeeccccccCCCCCCCHHHHHHHHHcCC----C
Confidence 46788888998888877 99995655354 666655 555665322232222222 3348999999988744 3
Q ss_pred EEEEeCCcc---cHHHHHHcCCeEEEECCCC
Q 032106 77 MLFFDDEDR---NIDAVSKMGVTGILVGNGV 104 (147)
Q Consensus 77 ~v~VgDs~~---Di~~a~~~Gi~~i~v~~~~ 104 (147)
-|+||-+.. |+..|-++|...+++..+.
T Consensus 251 pVivdAGIg~~sda~~AmelGadgVL~nSaI 281 (326)
T PRK11840 251 PVLVDAGVGTASDAAVAMELGCDGVLMNTAI 281 (326)
T ss_pred cEEEeCCCCCHHHHHHHHHcCCCEEEEccee
Confidence 588887754 8999999999999998764
No 231
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=88.65 E-value=9.1 Score=29.21 Aligned_cols=97 Identities=18% Similarity=0.224 Sum_probs=66.5
Q ss_pred CCchhHHHHHHHHHHC---CCeEE-EEcCCCChHHHHHHHHhcCcccccccceecCC--CCCcHHHHHHHHHHcCCCCCc
Q 032106 3 SLYPHAKGILHALKDK---GIDVA-VASRSPSPDIANTFLEKLNIKSMFVAKEIFSS--WSHKTDHFQRIHSRTGVPFNS 76 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~---g~~l~-i~S~~~~~~~~~~~l~~~gl~~~f~~~~~~~~--~kp~~~~~~~~~~~~~~~~~~ 76 (147)
.++|+..++++..+.. |+.+. +++ .+ ...++. +..+|-.-.....+.++. .-.+++.++.+.+..++
T Consensus 104 ~Llpd~~~tv~aa~~L~~~Gf~vlpyc~-dd-~~~ar~-l~~~G~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~~~v---- 176 (248)
T cd04728 104 TLLPDPIETLKAAEILVKEGFTVLPYCT-DD-PVLAKR-LEDAGCAAVMPLGSPIGSGQGLLNPYNLRIIIERADV---- 176 (248)
T ss_pred ccccCHHHHHHHHHHHHHCCCEEEEEeC-CC-HHHHHH-HHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHhCCC----
Confidence 5789999999888877 99999 555 44 666655 556676544332222222 33458888877776443
Q ss_pred EEEEeCCc---ccHHHHHHcCCeEEEECCCCCh
Q 032106 77 MLFFDDED---RNIDAVSKMGVTGILVGNGVNL 106 (147)
Q Consensus 77 ~v~VgDs~---~Di~~a~~~Gi~~i~v~~~~~~ 106 (147)
.|++|=+. .|+..|.++|...++++.+...
T Consensus 177 pVI~egGI~tpeda~~AmelGAdgVlV~SAIt~ 209 (248)
T cd04728 177 PVIVDAGIGTPSDAAQAMELGADAVLLNTAIAK 209 (248)
T ss_pred cEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcC
Confidence 47777654 4899999999999999987543
No 232
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=88.46 E-value=3.1 Score=32.11 Aligned_cols=44 Identities=23% Similarity=0.295 Sum_probs=31.4
Q ss_pred CCCCchhHHHHHHHHHHCCC-eEEEEcCCCChHHHHHHHHhcCcc
Q 032106 1 MPSLYPHAKGILHALKDKGI-DVAVASRSPSPDIANTFLEKLNIK 44 (147)
Q Consensus 1 ~p~~~pgv~~~L~~L~~~g~-~l~i~S~~~~~~~~~~~l~~~gl~ 44 (147)
+|.+.+++.++++.+++.|+ .+.+.||+......-..+...|+.
T Consensus 66 EPll~~~l~~iv~~l~~~g~~~v~i~TNG~ll~~~~~~l~~~g~~ 110 (302)
T TIGR02668 66 EPLLRKDLIEIIRRIKDYGIKDVSMTTNGILLEKLAKKLKEAGLD 110 (302)
T ss_pred ccccccCHHHHHHHHHhCCCceEEEEcCchHHHHHHHHHHHCCCC
Confidence 48889999999999999998 899999885321111234455654
No 233
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=88.25 E-value=0.93 Score=39.59 Aligned_cols=45 Identities=18% Similarity=0.285 Sum_probs=35.6
Q ss_pred CCCcHHHHHHHHHHcCCCCCcEEEEeCCcccHHHHHHcC--CeEEEECC
Q 032106 56 WSHKTDHFQRIHSRTGVPFNSMLFFDDEDRNIDAVSKMG--VTGILVGN 102 (147)
Q Consensus 56 ~kp~~~~~~~~~~~~~~~~~~~v~VgDs~~Di~~a~~~G--i~~i~v~~ 102 (147)
.-.|......+++ ++.++.++++||+.+|+.+.+.++ ..++.++.
T Consensus 655 ~vnKG~al~~ll~--~~~~d~vl~~GD~~nDe~Mf~~~~~~~~~v~vG~ 701 (726)
T PRK14501 655 GVNKGRAVRRLLE--AGPYDFVLAIGDDTTDEDMFRALPETAITVKVGP 701 (726)
T ss_pred CCCHHHHHHHHHh--cCCCCEEEEECCCCChHHHHHhcccCceEEEECC
Confidence 4567888888887 778899999999999999999874 24455554
No 234
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=87.70 E-value=4.7 Score=29.15 Aligned_cols=97 Identities=22% Similarity=0.307 Sum_probs=57.3
Q ss_pred hhHHHHHHHHHHCCCeEEEEcCCCChHHHHH---HHHhcCcccccccceecCCCCCcHHHHHHHHHHcCCCCCcEEEEeC
Q 032106 6 PHAKGILHALKDKGIDVAVASRSPSPDIANT---FLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLFFDD 82 (147)
Q Consensus 6 pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~---~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgD 82 (147)
.++...|..++++ .+++-+|... ....+. .+.+-.+ .++.++.++.. .| -.+.+...++ +|+.|
T Consensus 75 q~v~~~L~~~~e~-~~L~~itar~-~dl~~iT~~~l~~q~i--h~~~l~i~g~h-~K----V~~vrth~id----lf~ed 141 (194)
T COG5663 75 QLVKQVLPSLKEE-HRLIYITARK-ADLTRITYAWLFIQNI--HYDHLEIVGLH-HK----VEAVRTHNID----LFFED 141 (194)
T ss_pred HHHHHHhHHHHhh-ceeeeeehhh-HHHHHHHHHHHHHhcc--chhhhhhhccc-cc----chhhHhhccC----ccccc
Confidence 4677788888887 5566666343 333222 2222222 24544444431 01 2344555654 78899
Q ss_pred Cccc-HHHHHHcCCeEEEECCCCChHHHHHHHHH
Q 032106 83 EDRN-IDAVSKMGVTGILVGNGVNLGALRQGLTK 115 (147)
Q Consensus 83 s~~D-i~~a~~~Gi~~i~v~~~~~~~~~~~~l~~ 115 (147)
+..+ ++.|+.+|++++.+...++..-....+.+
T Consensus 142 ~~~na~~iAk~~~~~vilins~ynRkp~~~niiR 175 (194)
T COG5663 142 SHDNAGQIAKNAGIPVILINSPYNRKPAAKNIIR 175 (194)
T ss_pred cCchHHHHHHhcCCcEEEecCcccccchHHHHHH
Confidence 9774 78888899999999988775544444433
No 235
>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=87.68 E-value=1.2 Score=38.94 Aligned_cols=39 Identities=18% Similarity=0.211 Sum_probs=27.7
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcC
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLN 42 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~g 42 (147)
++..+++..|+.|+++|++++.+|+-. -+.+..+.+..+
T Consensus 658 kLQ~dVk~tLElLRNAgikiWMLTGDK-lETA~ciAkSs~ 696 (1051)
T KOG0210|consen 658 KLQDDVKPTLELLRNAGIKIWMLTGDK-LETAICIAKSSR 696 (1051)
T ss_pred HHhhhhHhHHHHHhhcCcEEEEEcCcc-hhheeeeehhcc
Confidence 456788999999999999999999544 443333333333
No 236
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=87.49 E-value=1.5 Score=38.21 Aligned_cols=43 Identities=28% Similarity=0.365 Sum_probs=35.2
Q ss_pred CchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCccccc
Q 032106 4 LYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMF 47 (147)
Q Consensus 4 ~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f 47 (147)
..+.+.++|+.|+++|++++++|++. ...+..+++.+++..+|
T Consensus 434 i~~~t~eAL~~L~ekGI~~VIATGRs-~~~i~~l~~~Lgl~~~~ 476 (694)
T PRK14502 434 SYSTALDALRLLKDKELPLVFCSAKT-MGEQDLYRNELGIKDPF 476 (694)
T ss_pred cCHHHHHHHHHHHHcCCeEEEEeCCC-HHHHHHHHHHcCCCCeE
Confidence 45678999999999999999999887 55667888999875443
No 237
>PLN02887 hydrolase family protein
Probab=87.44 E-value=1.4 Score=37.70 Aligned_cols=41 Identities=12% Similarity=0.233 Sum_probs=34.2
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcc
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIK 44 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~ 44 (147)
++-+...++|+.|+++|+.++|+|++. ...+...++.+++.
T Consensus 325 ~Is~~t~eAI~kl~ekGi~~vIATGR~-~~~i~~~l~~L~l~ 365 (580)
T PLN02887 325 QISETNAKALKEALSRGVKVVIATGKA-RPAVIDILKMVDLA 365 (580)
T ss_pred ccCHHHHHHHHHHHHCCCeEEEEcCCC-HHHHHHHHHHhCcc
Confidence 356788999999999999999999887 55557788888764
No 238
>PLN02580 trehalose-phosphatase
Probab=87.30 E-value=3.6 Score=33.44 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=30.5
Q ss_pred CCCcHHHHHHHHHHcCCCCCc---EEEEeCCcccHHHHHH
Q 032106 56 WSHKTDHFQRIHSRTGVPFNS---MLFFDDEDRNIDAVSK 92 (147)
Q Consensus 56 ~kp~~~~~~~~~~~~~~~~~~---~v~VgDs~~Di~~a~~ 92 (147)
.-.|....+.+++.+++...+ .+||||..+|..+.+.
T Consensus 299 g~~KG~Av~~Ll~~~g~~~~d~~~pi~iGDD~TDedmF~~ 338 (384)
T PLN02580 299 DWNKGKAVEFLLESLGLSNCDDVLPIYIGDDRTDEDAFKV 338 (384)
T ss_pred CCCHHHHHHHHHHhcCCCcccceeEEEECCCchHHHHHHh
Confidence 346788899999999987653 3899999999998886
No 239
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=86.95 E-value=4.4 Score=31.89 Aligned_cols=45 Identities=9% Similarity=0.066 Sum_probs=31.2
Q ss_pred CCCCchhHHHHHHHHHHCCC--eEEEEcCCCChHHHHHHHHhcCccc
Q 032106 1 MPSLYPHAKGILHALKDKGI--DVAVASRSPSPDIANTFLEKLNIKS 45 (147)
Q Consensus 1 ~p~~~pgv~~~L~~L~~~g~--~l~i~S~~~~~~~~~~~l~~~gl~~ 45 (147)
+|-+.+++.++++.+++.+. .+.+.||+..-...-..+...|+..
T Consensus 71 EPllr~dl~~li~~i~~~~~l~~i~itTNG~ll~~~~~~L~~aGl~~ 117 (329)
T PRK13361 71 EPLVRRGCDQLVARLGKLPGLEELSLTTNGSRLARFAAELADAGLKR 117 (329)
T ss_pred CCCccccHHHHHHHHHhCCCCceEEEEeChhHHHHHHHHHHHcCCCe
Confidence 58889999999999998764 7899998853221123345566653
No 240
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=86.41 E-value=1.5 Score=32.56 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=26.7
Q ss_pred CCCCchh-HHHHHHHHHHCCCeEEEEcCCCCh
Q 032106 1 MPSLYPH-AKGILHALKDKGIDVAVASRSPSP 31 (147)
Q Consensus 1 ~p~~~pg-v~~~L~~L~~~g~~l~i~S~~~~~ 31 (147)
+|.+.++ +.++++.+++.|+.+++.||+..+
T Consensus 48 EPllq~~fl~~l~~~~k~~gi~~~leTnG~~~ 79 (213)
T PRK10076 48 EVLMQAEFATRFLQRLRLWGVSCAIETAGDAP 79 (213)
T ss_pred hHHcCHHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 4778888 689999999999999999998643
No 241
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=86.21 E-value=1.1 Score=36.26 Aligned_cols=95 Identities=14% Similarity=0.171 Sum_probs=61.9
Q ss_pred CchhHHHHHHHHHHCCCeEEEEcCCCChHH-----------HHHHHHhcCcccc-cccceecCCCCCcHHHHHHHHHHcC
Q 032106 4 LYPHAKGILHALKDKGIDVAVASRSPSPDI-----------ANTFLEKLNIKSM-FVAKEIFSSWSHKTDHFQRIHSRTG 71 (147)
Q Consensus 4 ~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~-----------~~~~l~~~gl~~~-f~~~~~~~~~kp~~~~~~~~~~~~~ 71 (147)
++|.+..=|+.|...|+.++|.||.+.... ++.+...+++.-. +..+..-..+||...+++...+.++
T Consensus 105 l~~~vp~Klktl~~~g~~l~iftnq~~i~r~~~~~~~f~~Ki~~i~anl~vPi~~~~A~~~~~yRKP~tGMwe~~~~~~n 184 (422)
T KOG2134|consen 105 LFPEVPSKLKTLYQDGIKLFIFTNQNGIARGKLELEEFKKKIKAIVANLGVPIQLLAAIIKGKYRKPSTGMWEFLKRLEN 184 (422)
T ss_pred eccccchhhhhhccCCeEEEEEecccccccCcchHHHHHHHHHHHHHhcCCceEEeeeccCCcccCcchhHHHHHHHHhh
Confidence 678889999999999999999998763221 1223333444311 1111222348999999999987654
Q ss_pred ----CCCCcEEEEeCCc---------------ccHHHHHHcCCeEE
Q 032106 72 ----VPFNSMLFFDDED---------------RNIDAVSKMGVTGI 98 (147)
Q Consensus 72 ----~~~~~~v~VgDs~---------------~Di~~a~~~Gi~~i 98 (147)
+......||||.. .|+..|.++|+.+.
T Consensus 185 d~~~Isek~s~fvgdaagr~~~~~~~kkd~S~~D~~FAaN~gvkF~ 230 (422)
T KOG2134|consen 185 DSVEISEKASIFVGDAAGRPLDALRRKKDHSSADRKFAANAGVKFK 230 (422)
T ss_pred ccceeeechhhhhhhhccCccccccCcccccHHHHHHHHhcCCccC
Confidence 3345566888753 26777777777654
No 242
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=86.10 E-value=1.4 Score=33.67 Aligned_cols=40 Identities=10% Similarity=-0.027 Sum_probs=31.4
Q ss_pred CCchhHHHHHHHHHH-CCCeEEEEcCCCChHHHHHHHHhcCc
Q 032106 3 SLYPHAKGILHALKD-KGIDVAVASRSPSPDIANTFLEKLNI 43 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~-~g~~l~i~S~~~~~~~~~~~l~~~gl 43 (147)
.+.|.+.++|+.|.+ .|+.++|+|++. ...+..++..+++
T Consensus 36 ~i~~~~~~~L~~L~~~~g~~v~i~SGR~-~~~~~~~~~~~~~ 76 (266)
T PRK10187 36 VVPDNILQGLQLLATANDGALALISGRS-MVELDALAKPYRF 76 (266)
T ss_pred cCCHHHHHHHHHHHhCCCCcEEEEeCCC-HHHHHHhcCcccc
Confidence 456889999999998 799999999887 5555666665553
No 243
>PTZ00174 phosphomannomutase; Provisional
Probab=85.88 E-value=2 Score=32.27 Aligned_cols=36 Identities=25% Similarity=0.260 Sum_probs=27.9
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHH
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLE 39 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~ 39 (147)
++-|...++|+.|+++|+.++++|+++ ...+...+.
T Consensus 22 ~is~~~~~ai~~l~~~Gi~~viaTGR~-~~~i~~~l~ 57 (247)
T PTZ00174 22 PITQEMKDTLAKLKSKGFKIGVVGGSD-YPKIKEQLG 57 (247)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEcCCC-HHHHHHHHh
Confidence 456788999999999999999999887 333344443
No 244
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=85.37 E-value=12 Score=27.25 Aligned_cols=99 Identities=10% Similarity=0.090 Sum_probs=57.7
Q ss_pred HHHHHHHCCCeEEEEcCC-----C-------ChHHHHHHHHhcCcccccccceecCCCCC-cHHHHHHHHHHcCCCCCcE
Q 032106 11 ILHALKDKGIDVAVASRS-----P-------SPDIANTFLEKLNIKSMFVAKEIFSSWSH-KTDHFQRIHSRTGVPFNSM 77 (147)
Q Consensus 11 ~L~~L~~~g~~l~i~S~~-----~-------~~~~~~~~l~~~gl~~~f~~~~~~~~~kp-~~~~~~~~~~~~~~~~~~~ 77 (147)
++..+++.|+.+..++.. . ....++.+.+.+|+..+.-.+ ...++ ....+...++++...--+.
T Consensus 15 al~~a~~~G~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgipl~~i~~---~~~~e~~~~~l~~~l~~~~~~g~~~ 91 (194)
T cd01994 15 ALYRALEEGHEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIPLIRIEI---SGEEEDEVEDLKELLRKLKEEGVDA 91 (194)
T ss_pred HHHHHHHcCCEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCcEEEEeC---CCCchHHHHHHHHHHHHHHHcCCCE
Confidence 445566678765444411 0 234667788889986442221 11111 1123333344433223568
Q ss_pred EEEeCCcccH------HHHHHcCCeEEEECCCCChHHHHHH
Q 032106 78 LFFDDEDRNI------DAVSKMGVTGILVGNGVNLGALRQG 112 (147)
Q Consensus 78 v~VgDs~~Di------~~a~~~Gi~~i~v~~~~~~~~~~~~ 112 (147)
+..||...|. ..+.++|+.++.-.|+.+.+++.+.
T Consensus 92 vv~G~i~sd~~~~~~e~~~~~~gl~~~~PLW~~~~~~ll~e 132 (194)
T cd01994 92 VVFGAILSEYQRTRVERVCERLGLEPLAPLWGRDQEELLRE 132 (194)
T ss_pred EEECccccHHHHHHHHHHHHHcCCEEEecccCCCHHHHHHH
Confidence 9999997764 4577799999999999887765543
No 245
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=84.92 E-value=7.2 Score=30.00 Aligned_cols=91 Identities=21% Similarity=0.272 Sum_probs=59.2
Q ss_pred CCCchhHHHHHHHHHHC------CCeEEEEcCCCChHHHHHH---HHhcCcccccccceecCCCCCcHHHHHHHHHHcCC
Q 032106 2 PSLYPHAKGILHALKDK------GIDVAVASRSPSPDIANTF---LEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGV 72 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~------g~~l~i~S~~~~~~~~~~~---l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~ 72 (147)
+.|+-.....|.+|++. -++++|||..+.+.. +++ |+.-|+. ++.. .+=..-+|..++..+ +
T Consensus 163 ~GP~~~fl~~L~~lQ~~~~~~~~piRtalVTAR~apah-~RvI~TLr~Wgv~--vDEa-fFLgG~~K~~vL~~~----~- 233 (264)
T PF06189_consen 163 EGPFKDFLKKLSKLQKKFPPENSPIRTALVTARSAPAH-ERVIRTLRSWGVR--VDEA-FFLGGLPKGPVLKAF----R- 233 (264)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCceEEEEEEcCCCchh-HHHHHHHHHcCCc--HhHH-HHhCCCchhHHHHhh----C-
Confidence 45666777777777755 478999997664544 443 3444543 2221 111234566555444 2
Q ss_pred CCCcEEEEeCCcccHHHHHHcCCeEEEECCCCC
Q 032106 73 PFNSMLFFDDEDRNIDAVSKMGVTGILVGNGVN 105 (147)
Q Consensus 73 ~~~~~v~VgDs~~Di~~a~~~Gi~~i~v~~~~~ 105 (147)
-=+|++|....++.|. .++.+..|++|..
T Consensus 234 ---phIFFDDQ~~H~~~a~-~~vps~hVP~gv~ 262 (264)
T PF06189_consen 234 ---PHIFFDDQDGHLESAS-KVVPSGHVPYGVA 262 (264)
T ss_pred ---CCEeecCchhhhhHhh-cCCCEEeccCCcC
Confidence 2389999999999998 7999999988754
No 246
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=84.70 E-value=2 Score=32.18 Aligned_cols=40 Identities=5% Similarity=0.074 Sum_probs=33.0
Q ss_pred CchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcc
Q 032106 4 LYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIK 44 (147)
Q Consensus 4 ~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~ 44 (147)
..|.+.++++.++++|+.++++|++. ...++.+++.+++.
T Consensus 22 ~~~~~~~~i~~~~~~gi~fv~aTGR~-~~~~~~~~~~~~~~ 61 (249)
T TIGR01485 22 ALLRLNALLEDHRGEDSLLVYSTGRS-PHSYKELQKQKPLL 61 (249)
T ss_pred HHHHHHHHHHHhhccCceEEEEcCCC-HHHHHHHHhcCCCC
Confidence 45788999999999999999999887 66667777777764
No 247
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=84.63 E-value=14 Score=27.38 Aligned_cols=101 Identities=11% Similarity=0.075 Sum_probs=57.7
Q ss_pred HHHHHHHCCCeE-EEEc-----------CCCChHHHHHHHHhcCcccccccceecCCCCC-cHHHHHHHHHHcCCCCCcE
Q 032106 11 ILHALKDKGIDV-AVAS-----------RSPSPDIANTFLEKLNIKSMFVAKEIFSSWSH-KTDHFQRIHSRTGVPFNSM 77 (147)
Q Consensus 11 ~L~~L~~~g~~l-~i~S-----------~~~~~~~~~~~l~~~gl~~~f~~~~~~~~~kp-~~~~~~~~~~~~~~~~~~~ 77 (147)
++..+++.|+.+ +++| ...+...++.+.+.+|+..+.-. +...++ ..+.+..++.++.-..-+.
T Consensus 13 al~~a~~~G~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~lgip~~~i~---~~~~~~~~~~~l~~~l~~~~~~g~~~ 89 (218)
T TIGR03679 13 ALYKALEEGHEVRCLITVVPENEESYMFHTPNIELTRLQAEALGIPLVKIE---TSGEKEKEVEDLKGALKELKREGVEG 89 (218)
T ss_pred HHHHHHHcCCEEEEEEEeccCCCCccccCCCCHHHHHHHHHHhCCCEEEEE---CCCCChHHHHHHHHHHHHHHHcCCCE
Confidence 445666788877 3545 11124566778888998643221 111011 1122333333331123568
Q ss_pred EEEeCCcccH------HHHHHcCCeEEEECCCCChHHHHHHHH
Q 032106 78 LFFDDEDRNI------DAVSKMGVTGILVGNGVNLGALRQGLT 114 (147)
Q Consensus 78 v~VgDs~~Di------~~a~~~Gi~~i~v~~~~~~~~~~~~l~ 114 (147)
+..||...|. ..+...|+..+.-.|+.+..++.+.+.
T Consensus 90 vv~G~i~sd~~~~~~e~v~~~~gl~~~~PLw~~~~~el~~~~~ 132 (218)
T TIGR03679 90 IVTGAIASRYQKSRIERICEELGLKVFAPLWGRDQEEYLRELV 132 (218)
T ss_pred EEECCcccHhHHHHHHHHHHhCCCeEEeehhcCCHHHHHHHHH
Confidence 9999987764 556778999888889888776554333
No 248
>PRK00208 thiG thiazole synthase; Reviewed
Probab=84.38 E-value=16 Score=27.90 Aligned_cols=97 Identities=16% Similarity=0.216 Sum_probs=65.8
Q ss_pred CCchhHHHHHHHHHHC---CCeEE-EEcCCCChHHHHHHHHhcCcccccccceecCC--CCCcHHHHHHHHHHcCCCCCc
Q 032106 3 SLYPHAKGILHALKDK---GIDVA-VASRSPSPDIANTFLEKLNIKSMFVAKEIFSS--WSHKTDHFQRIHSRTGVPFNS 76 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~---g~~l~-i~S~~~~~~~~~~~l~~~gl~~~f~~~~~~~~--~kp~~~~~~~~~~~~~~~~~~ 76 (147)
.++|+..++++..+.. |+.+. +|+ .+ ...++. +..+|-.-.....+.++. .-.+++.++.+.+..++
T Consensus 104 ~llpd~~~tv~aa~~L~~~Gf~vlpyc~-~d-~~~ak~-l~~~G~~~vmPlg~pIGsg~gi~~~~~i~~i~e~~~v---- 176 (250)
T PRK00208 104 TLLPDPIETLKAAEILVKEGFVVLPYCT-DD-PVLAKR-LEEAGCAAVMPLGAPIGSGLGLLNPYNLRIIIEQADV---- 176 (250)
T ss_pred CCCcCHHHHHHHHHHHHHCCCEEEEEeC-CC-HHHHHH-HHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHhcCC----
Confidence 4688888888888777 99999 666 44 566555 666676544332222222 33357777777776443
Q ss_pred EEEEeCCcc---cHHHHHHcCCeEEEECCCCCh
Q 032106 77 MLFFDDEDR---NIDAVSKMGVTGILVGNGVNL 106 (147)
Q Consensus 77 ~v~VgDs~~---Di~~a~~~Gi~~i~v~~~~~~ 106 (147)
.|++|=+.. |+..|.++|...++++.+...
T Consensus 177 pVIveaGI~tpeda~~AmelGAdgVlV~SAItk 209 (250)
T PRK00208 177 PVIVDAGIGTPSDAAQAMELGADAVLLNTAIAV 209 (250)
T ss_pred eEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhC
Confidence 477776654 899999999999999987543
No 249
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=84.10 E-value=12 Score=29.19 Aligned_cols=104 Identities=18% Similarity=0.277 Sum_probs=59.0
Q ss_pred chhHHHHHHHHHHCCCe---------EEEEcCCCChHHHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHHcCCCCC
Q 032106 5 YPHAKGILHALKDKGID---------VAVASRSPSPDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFN 75 (147)
Q Consensus 5 ~pgv~~~L~~L~~~g~~---------l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~ 75 (147)
.+++.+.++.|+.+ ++ ++-+| .++...++.+....+ ++-. ..+....++.-+.++.++.|. +
T Consensus 170 ~ddt~~Iv~~l~~r-~p~~~~~~~~~ICyAT-~nRQ~Avk~la~~~D---l~iV--VG~~nSSNs~rL~eiA~~~g~-~- 240 (294)
T COG0761 170 VDDTAEIVAALKER-FPKIEVPPFNDICYAT-QNRQDAVKELAPEVD---LVIV--VGSKNSSNSNRLAEIAKRHGK-P- 240 (294)
T ss_pred HHHHHHHHHHHHHh-CccccCCcccccchhh-hhHHHHHHHHhhcCC---EEEE--ECCCCCccHHHHHHHHHHhCC-C-
Confidence 45667777777766 55 55555 332333344333322 2222 222233456666777777786 3
Q ss_pred cEEEEeCCcccHHHHHHcCCeEEEECCCCChHHH--HHHHHHHHHh
Q 032106 76 SMLFFDDEDRNIDAVSKMGVTGILVGNGVNLGAL--RQGLTKFSQN 119 (147)
Q Consensus 76 ~~v~VgDs~~Di~~a~~~Gi~~i~v~~~~~~~~~--~~~l~~~~~~ 119 (147)
++.| |+..||....=.|..+++++-|...+++ ...+..+++.
T Consensus 241 -aylI-d~~~ei~~~w~~~~~~VGvTAGAStPd~lV~~Vi~~l~~~ 284 (294)
T COG0761 241 -AYLI-DDAEEIDPEWLKGVKTVGVTAGASTPDWLVQEVIAKLREL 284 (294)
T ss_pred -eEEe-CChHhCCHHHhcCccEEEEecCCCCCHHHHHHHHHHHHHh
Confidence 3444 5677888888888899999888654432 3444444443
No 250
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=83.78 E-value=1.2 Score=33.46 Aligned_cols=30 Identities=20% Similarity=0.259 Sum_probs=27.3
Q ss_pred CCCCchhHHHHHHHHHHCCCeEEEEcCCCC
Q 032106 1 MPSLYPHAKGILHALKDKGIDVAVASRSPS 30 (147)
Q Consensus 1 ~p~~~pgv~~~L~~L~~~g~~l~i~S~~~~ 30 (147)
+|-+.++..++++.|++.|+++.|-||+..
T Consensus 82 EPll~~~l~~li~~l~~~g~~v~leTNGtl 111 (238)
T TIGR03365 82 NPALQKPLGELIDLGKAKGYRFALETQGSV 111 (238)
T ss_pred chhhhHhHHHHHHHHHHCCCCEEEECCCCC
Confidence 477889999999999999999999999974
No 251
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=83.03 E-value=0.58 Score=27.89 Aligned_cols=26 Identities=15% Similarity=0.424 Sum_probs=16.0
Q ss_pred HHHHHHHcCCCCCcEEEEeCCcccHHHHHH
Q 032106 63 FQRIHSRTGVPFNSMLFFDDEDRNIDAVSK 92 (147)
Q Consensus 63 ~~~~~~~~~~~~~~~v~VgDs~~Di~~a~~ 92 (147)
.++.++++|+ ++++||..+|++.+..
T Consensus 7 VqQLLK~fG~----~IY~gdr~~DielM~~ 32 (62)
T PF06014_consen 7 VQQLLKKFGI----IIYVGDRLWDIELMEI 32 (62)
T ss_dssp HHHHHHTTS---------S-HHHHHHHHHH
T ss_pred HHHHHHHCCE----EEEeCChHHHHHHHHH
Confidence 4678888888 8999999999987653
No 252
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=81.92 E-value=3.3 Score=30.96 Aligned_cols=39 Identities=15% Similarity=0.247 Sum_probs=29.4
Q ss_pred CCCCchhH-HHHHHHHHHCCCeEEEEcCCCC---hHHHHHHHH
Q 032106 1 MPSLYPHA-KGILHALKDKGIDVAVASRSPS---PDIANTFLE 39 (147)
Q Consensus 1 ~p~~~pgv-~~~L~~L~~~g~~l~i~S~~~~---~~~~~~~l~ 39 (147)
+|.+.++. .++++.+++.|+.+++.||+.. .+.++.++.
T Consensus 80 EPll~~~~~~~l~~~~k~~g~~i~l~TNG~~~~~~~~~~~ll~ 122 (246)
T PRK11145 80 EAILQAEFVRDWFRACKKEGIHTCLDTNGFVRRYDPVIDELLD 122 (246)
T ss_pred cHhcCHHHHHHHHHHHHHcCCCEEEECCCCCCcchHHHHHHHH
Confidence 47778885 5999999999999999999873 244444444
No 253
>PLN02334 ribulose-phosphate 3-epimerase
Probab=81.73 E-value=19 Score=26.73 Aligned_cols=112 Identities=13% Similarity=0.176 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHHCCCeEEEEcCCCC-hHHHHHHHHhcCccccccccee---cCCCCCcHHHHHHHHHHcCCCC-CcEEEE
Q 032106 6 PHAKGILHALKDKGIDVAVASRSPS-PDIANTFLEKLNIKSMFVAKEI---FSSWSHKTDHFQRIHSRTGVPF-NSMLFF 80 (147)
Q Consensus 6 pgv~~~L~~L~~~g~~l~i~S~~~~-~~~~~~~l~~~gl~~~f~~~~~---~~~~kp~~~~~~~~~~~~~~~~-~~~v~V 80 (147)
+.....++.++..|.++++..|.+. .+.++..+..-| .+|+-.... .+..+..+..+..+.+--...+ -.++.+
T Consensus 102 d~~~~~~~~i~~~g~~iGls~~~~t~~~~~~~~~~~~~-~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~~~~~I~a~ 180 (229)
T PLN02334 102 IHLHRLIQQIKSAGMKAGVVLNPGTPVEAVEPVVEKGL-VDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKYPELDIEVD 180 (229)
T ss_pred hhHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhccC-CCEEEEEEEecCCCccccCHHHHHHHHHHHHhCCCCcEEEe
Confidence 3456888999999999999997432 223333332201 344322111 1122233444444432111111 234455
Q ss_pred -eCCcccHHHHHHcCCeEEEECCCC-ChHHHHHHHHHHHH
Q 032106 81 -DDEDRNIDAVSKMGVTGILVGNGV-NLGALRQGLTKFSQ 118 (147)
Q Consensus 81 -gDs~~Di~~a~~~Gi~~i~v~~~~-~~~~~~~~l~~~~~ 118 (147)
|=+..++....++|+..+.+.... ..+.....++++.+
T Consensus 181 GGI~~e~i~~l~~aGad~vvvgsai~~~~d~~~~~~~l~~ 220 (229)
T PLN02334 181 GGVGPSTIDKAAEAGANVIVAGSAVFGAPDYAEVISGLRA 220 (229)
T ss_pred CCCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHH
Confidence 445568999999999999887653 22334444455543
No 254
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=80.78 E-value=21 Score=26.74 Aligned_cols=116 Identities=9% Similarity=0.229 Sum_probs=71.9
Q ss_pred CchhHHHHHHHHHHCCCeEEEEcCCCCh-HHHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHHcCCCC---CcEEE
Q 032106 4 LYPHAKGILHALKDKGIDVAVASRSPSP-DIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPF---NSMLF 79 (147)
Q Consensus 4 ~~pgv~~~L~~L~~~g~~l~i~S~~~~~-~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~---~~~v~ 79 (147)
..+...++|+.+|+.|.+.+|+=|-..+ +.++.++..+++--.+..--.++..|=-++.++++.+--.+-. +-.+-
T Consensus 94 ~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~Ie 173 (220)
T COG0036 94 ATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDERLDILIE 173 (220)
T ss_pred cCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEEeECCCCcccccCHHHHHHHHHHHHHhcccCCeEEE
Confidence 4567889999999999999999865432 2344556666554333332344445556666666544322222 33566
Q ss_pred EeCCcc--cHHHHHHcCCeEEEECCC-CChHHHHHHHHHHHHh
Q 032106 80 FDDEDR--NIDAVSKMGVTGILVGNG-VNLGALRQGLTKFSQN 119 (147)
Q Consensus 80 VgDs~~--Di~~a~~~Gi~~i~v~~~-~~~~~~~~~l~~~~~~ 119 (147)
|+=+.+ .+..+.++|..++..+.. +..+.+...++.++..
T Consensus 174 VDGGI~~~t~~~~~~AGad~~VaGSalF~~~d~~~~i~~~~~~ 216 (220)
T COG0036 174 VDGGINLETIKQLAAAGADVFVAGSALFGADDYKATIRELRGE 216 (220)
T ss_pred EeCCcCHHHHHHHHHcCCCEEEEEEEEeCCccHHHHHHHHHHH
Confidence 666666 477778889998888765 2333466666665544
No 255
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=80.29 E-value=5.3 Score=27.88 Aligned_cols=37 Identities=19% Similarity=0.320 Sum_probs=26.3
Q ss_pred chhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhc
Q 032106 5 YPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKL 41 (147)
Q Consensus 5 ~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~ 41 (147)
.+.+.++++.+++.|+++++.||...++..+.++..+
T Consensus 74 ~~~l~~ll~~lk~~Gl~i~l~Tg~~~~~~~~~il~~i 110 (147)
T TIGR02826 74 REALLSLLKIFKEKGLKTCLYTGLEPKDIPLELVQHL 110 (147)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHhC
Confidence 3568889999999999999999765433444444443
No 256
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=80.29 E-value=5.9 Score=36.29 Aligned_cols=71 Identities=10% Similarity=0.261 Sum_probs=51.5
Q ss_pred HHHHHHHHhcCccccc---c---cceecCCCCCcHHHHHHHHHHcCCCCCcE-EEEeCCcc-cHHHHHHcCCeEEEECCC
Q 032106 32 DIANTFLEKLNIKSMF---V---AKEIFSSWSHKTDHFQRIHSRTGVPFNSM-LFFDDEDR-NIDAVSKMGVTGILVGNG 103 (147)
Q Consensus 32 ~~~~~~l~~~gl~~~f---~---~~~~~~~~kp~~~~~~~~~~~~~~~~~~~-v~VgDs~~-Di~~a~~~Gi~~i~v~~~ 103 (147)
..++..|+..++.... . ..++++..-.+...++++..++|++.+++ ||+||+-+ |++.... |+....|..|
T Consensus 924 ~elr~~Lr~~gLr~~~iys~~~~~LDVlP~~ASKgqAlRyL~~rwgi~l~~v~VfaGdSGntD~e~Ll~-G~~~tvi~~g 1002 (1050)
T TIGR02468 924 KELRKLLRIQGLRCHAVYCRNGTRLNVIPLLASRSQALRYLFVRWGIELANMAVFVGESGDTDYEGLLG-GLHKTVILKG 1002 (1050)
T ss_pred HHHHHHHHhCCCceEEEeecCCcEeeeeeCCCCHHHHHHHHHHHcCCChHHeEEEeccCCCCCHHHHhC-CceeEEEEec
Confidence 3456778888876533 1 12566667789999999999999999998 66999999 9886643 6644444344
No 257
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=79.55 E-value=34 Score=28.85 Aligned_cols=82 Identities=13% Similarity=0.144 Sum_probs=48.9
Q ss_pred HHHHHHCCCeEEEEcCCCChHHHHHHHHh-cCcccccccc-ee------cCC---CCC-c-HHHHHHHHHHcCCCCCcEE
Q 032106 12 LHALKDKGIDVAVASRSPSPDIANTFLEK-LNIKSMFVAK-EI------FSS---WSH-K-TDHFQRIHSRTGVPFNSML 78 (147)
Q Consensus 12 L~~L~~~g~~l~i~S~~~~~~~~~~~l~~-~gl~~~f~~~-~~------~~~---~kp-~-~~~~~~~~~~~~~~~~~~v 78 (147)
++.++++|.. +|+|.+. ..+++.+++. +|++...-.. +. .+. ..+ . ..-...+.+.+|.+... +
T Consensus 116 ~~~~~~~g~~-vvVSASp-~~~Vepfa~~~LGid~VIgTeLev~~~G~~TG~i~g~~~c~Ge~Kv~rl~~~~g~~~~~-~ 192 (497)
T PLN02177 116 WRVFNSFGKR-YIITASP-RIMVEPFVKTFLGADKVLGTELEVSKSGRATGFMKKPGVLVGDHKRDAVLKEFGDALPD-L 192 (497)
T ss_pred HHHHHhCCCE-EEEECCc-HHHHHHHHHHcCCCCEEEecccEECcCCEEeeeecCCCCCccHHHHHHHHHHhCCCCce-E
Confidence 3445567764 9999777 6788999976 7887542110 11 010 001 1 11222233456644444 8
Q ss_pred EEeCCcccHHHHHHcCCe
Q 032106 79 FFDDEDRNIDAVSKMGVT 96 (147)
Q Consensus 79 ~VgDs~~Di~~a~~~Gi~ 96 (147)
..|||.+|......++-.
T Consensus 193 aYgDS~sD~plL~~a~e~ 210 (497)
T PLN02177 193 GLGDRETDHDFMSICKEG 210 (497)
T ss_pred EEECCccHHHHHHhCCcc
Confidence 999999999999888854
No 258
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=79.49 E-value=3.5 Score=32.33 Aligned_cols=44 Identities=7% Similarity=-0.186 Sum_probs=36.2
Q ss_pred CCCcHHHHHHHHHHcCCC--CCcEEEEeCCcccHHHHHHcCCeEEE
Q 032106 56 WSHKTDHFQRIHSRTGVP--FNSMLFFDDEDRNIDAVSKMGVTGIL 99 (147)
Q Consensus 56 ~kp~~~~~~~~~~~~~~~--~~~~v~VgDs~~Di~~a~~~Gi~~i~ 99 (147)
.-+|....+.+.+.|... +-.++-+||+++|+.+-..+.+.++.
T Consensus 206 ~~dKg~A~~~L~~~y~~~~~~~~tiaLGDspND~~mLe~~D~~vvi 251 (302)
T PRK12702 206 SLPGEQAVQLLLDCYQRHLGPIKALGIGCSPPDLAFLRWSEQKVVL 251 (302)
T ss_pred CCCHHHHHHHHHHHHHhccCCceEEEecCChhhHHHHHhCCeeEEe
Confidence 347888888888887654 44799999999999999999988664
No 259
>PRK08005 epimerase; Validated
Probab=79.06 E-value=24 Score=26.22 Aligned_cols=98 Identities=9% Similarity=0.091 Sum_probs=59.5
Q ss_pred hhHHHHHHHHHHCCCeEEEEcCCCCh-HHHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHHcCCCCCcEEEEeCCc
Q 032106 6 PHAKGILHALKDKGIDVAVASRSPSP-DIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLFFDDED 84 (147)
Q Consensus 6 pgv~~~L~~L~~~g~~l~i~S~~~~~-~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgDs~ 84 (147)
+....+|+.+|+.|.+.+|+=|...+ +.++.++...++--.+...-.++..+=-+..++++.+--.+.++.-+-|+=+.
T Consensus 93 ~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~~~~~I~VDGGI 172 (210)
T PRK08005 93 QNPSEILADIRAIGAKAGLALNPATPLLPYRYLALQLDALMIMTSEPDGRGQQFIAAMCEKVSQSREHFPAAECWADGGI 172 (210)
T ss_pred cCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHhcCEEEEEEecCCCccceecHHHHHHHHHHHHhcccCCEEEECCC
Confidence 34668999999999999999866522 22233344333222222212334455566677666553333222237787777
Q ss_pred c--cHHHHHHcCCeEEEECCC
Q 032106 85 R--NIDAVSKMGVTGILVGNG 103 (147)
Q Consensus 85 ~--Di~~a~~~Gi~~i~v~~~ 103 (147)
+ .+..+.++|...+.++..
T Consensus 173 ~~~~i~~l~~aGad~~V~Gsa 193 (210)
T PRK08005 173 TLRAARLLAAAGAQHLVIGRA 193 (210)
T ss_pred CHHHHHHHHHCCCCEEEEChH
Confidence 7 577888899998887754
No 260
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=78.41 E-value=11 Score=27.21 Aligned_cols=119 Identities=12% Similarity=0.153 Sum_probs=59.6
Q ss_pred HHHHHHHHHHC--CCeEEEEcCCCChHHHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHHcCCCCCcEEEEeCCcc
Q 032106 8 AKGILHALKDK--GIDVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLFFDDEDR 85 (147)
Q Consensus 8 v~~~L~~L~~~--g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgDs~~ 85 (147)
+..+++.|+++ ++.+.+-|.+. ... +...+.++ +... ..-.+-..+......++.+ .|+-+++++--.+
T Consensus 37 ~~~Li~~l~~~~p~~~illT~~T~-tg~-~~~~~~~~--~~v~---~~~~P~D~~~~~~rfl~~~--~P~~~i~~EtElW 107 (186)
T PF04413_consen 37 ARPLIKRLRKQRPDLRILLTTTTP-TGR-EMARKLLP--DRVD---VQYLPLDFPWAVRRFLDHW--RPDLLIWVETELW 107 (186)
T ss_dssp HHHHHHHHTT---TS-EEEEES-C-CHH-HHHHGG-G--GG-S---EEE---SSHHHHHHHHHHH----SEEEEES----
T ss_pred HHHHHHHHHHhCCCCeEEEEecCC-chH-HHHHHhCC--CCeE---EEEeCccCHHHHHHHHHHh--CCCEEEEEccccC
Confidence 56778888876 78888877655 232 23333321 1011 1112234577788888865 5688999998887
Q ss_pred -c-HHHHHHcCCeEEEECCCCC----------hHHHHHHHHHHHHhhccchhhHHHHHHhhc
Q 032106 86 -N-IDAVSKMGVTGILVGNGVN----------LGALRQGLTKFSQNWNTSQKNKQKWISKFS 135 (147)
Q Consensus 86 -D-i~~a~~~Gi~~i~v~~~~~----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 135 (147)
+ +..|++.|+..++++--.. ..-....+..|..-..-+..+..++.+.-.
T Consensus 108 Pnll~~a~~~~ip~~LvNarls~~s~~~~~~~~~~~r~~l~~f~~i~aqs~~da~r~~~lG~ 169 (186)
T PF04413_consen 108 PNLLREAKRRGIPVVLVNARLSERSFRRYRRFPFLFRPLLSRFDRILAQSEADAERFRKLGA 169 (186)
T ss_dssp HHHHHH-----S-EEEEEE--------------HHHHHHGGG-SEEEESSHHHHHHHHTTT-
T ss_pred HHHHHHHhhcCCCEEEEeeeeccccchhhhhhHHHHHHHHHhCCEEEECCHHHHHHHHHcCC
Confidence 4 8888999999999963221 113344445555556777888888886555
No 261
>PF06073 DUF934: Bacterial protein of unknown function (DUF934); InterPro: IPR008318 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=77.35 E-value=11 Score=25.16 Aligned_cols=56 Identities=16% Similarity=0.188 Sum_probs=46.8
Q ss_pred HHHHHH-HcCCCCCcEEEEeCCccc-HHHHHHcCCeEEEECCCCChHHHHHHHHHHHHh
Q 032106 63 FQRIHS-RTGVPFNSMLFFDDEDRN-IDAVSKMGVTGILVGNGVNLGALRQGLTKFSQN 119 (147)
Q Consensus 63 ~~~~~~-~~~~~~~~~v~VgDs~~D-i~~a~~~Gi~~i~v~~~~~~~~~~~~l~~~~~~ 119 (147)
+-..++ ++|.. .++-.+||=..| +..++++|+.++.+..+...+.+...+..|...
T Consensus 38 ~ArlLR~r~gy~-GelRA~Gdvl~DQl~~l~R~GFdsf~l~~~~~~~~~~~~l~~fs~~ 95 (110)
T PF06073_consen 38 QARLLRERYGYT-GELRAVGDVLRDQLFYLRRCGFDSFELREDQDPEDALAALSDFSVS 95 (110)
T ss_pred HHHHHHHHcCCC-CcEEEeccchHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHhhCCcc
Confidence 344555 88876 569999999998 999999999999999988888888888877654
No 262
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=76.94 E-value=31 Score=26.35 Aligned_cols=95 Identities=17% Similarity=0.256 Sum_probs=68.4
Q ss_pred CCchhHHHHHH---HHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccceecC--CCCCcHHHHHHHHHHcCCCCCcE
Q 032106 3 SLYPHAKGILH---ALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFS--SWSHKTDHFQRIHSRTGVPFNSM 77 (147)
Q Consensus 3 ~~~pgv~~~L~---~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~~~~--~~kp~~~~~~~~~~~~~~~~~~~ 77 (147)
.++|+..++|+ .|-+.|+.+...++.+ +-.+++ |+..|-.-.+.....++ ..-.++..++.++++..++
T Consensus 111 tLlPD~~etl~Aae~Lv~eGF~VlPY~~dD-~v~arr-Lee~GcaavMPl~aPIGSg~G~~n~~~l~iiie~a~VP---- 184 (262)
T COG2022 111 TLLPDPIETLKAAEQLVKEGFVVLPYTTDD-PVLARR-LEEAGCAAVMPLGAPIGSGLGLQNPYNLEIIIEEADVP---- 184 (262)
T ss_pred ccCCChHHHHHHHHHHHhCCCEEeeccCCC-HHHHHH-HHhcCceEeccccccccCCcCcCCHHHHHHHHHhCCCC----
Confidence 56777777775 5667899999999665 666544 66677655555432222 2456788899999988774
Q ss_pred EEEeCC---cccHHHHHHcCCeEEEECCC
Q 032106 78 LFFDDE---DRNIDAVSKMGVTGILVGNG 103 (147)
Q Consensus 78 v~VgDs---~~Di~~a~~~Gi~~i~v~~~ 103 (147)
+.|+-+ ++|...|-++|...++++..
T Consensus 185 viVDAGiG~pSdAa~aMElG~DaVL~NTA 213 (262)
T COG2022 185 VIVDAGIGTPSDAAQAMELGADAVLLNTA 213 (262)
T ss_pred EEEeCCCCChhHHHHHHhcccceeehhhH
Confidence 677765 45888888899999999764
No 263
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=76.90 E-value=8 Score=34.68 Aligned_cols=96 Identities=14% Similarity=0.136 Sum_probs=65.6
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCccc----ccccc--------e-----------ecCC--CC
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKS----MFVAK--------E-----------IFSS--WS 57 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~----~f~~~--------~-----------~~~~--~k 57 (147)
.+.+.+++++..++..|+++..+|+-. +..++......|+.. -++.+ + ..+. +.
T Consensus 590 PPR~~vP~Av~~CrsAGIkvimVTgdh-piTAkAiA~~vgIi~~~~et~e~~a~r~~~~v~~vn~~~a~a~VihG~eL~~ 668 (1019)
T KOG0203|consen 590 PPRAAVPDAVGKCRSAGIKVIMVTGDH-PITAKAIAKSVGIISEGSETVEDIAKRLNIPVEQVNSRDAKAAVIHGSELPD 668 (1019)
T ss_pred CCcccCchhhhhhhhhCceEEEEecCc-cchhhhhhhheeeecCCchhhhhhHHhcCCcccccCccccceEEEecccccc
Confidence 356788999999999999999999555 888888888888532 12110 0 1111 22
Q ss_pred CcHHHHHHHHHHcC------CCCCc--------------EEEEeCCcccHHHHHHcCCeEEE
Q 032106 58 HKTDHFQRIHSRTG------VPFNS--------------MLFFDDEDRNIDAVSKMGVTGIL 99 (147)
Q Consensus 58 p~~~~~~~~~~~~~------~~~~~--------------~v~VgDs~~Di~~a~~~Gi~~i~ 99 (147)
-.++-+.++++... ..|++ +-+.||+.+|-.+.+++.+...+
T Consensus 669 ~~~~qld~il~nh~eIVFARTSPqQKLiIVe~cQr~GaiVaVTGDGVNDsPALKKADIGVAM 730 (1019)
T KOG0203|consen 669 MSSEQLDELLQNHQEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAM 730 (1019)
T ss_pred cCHHHHHHHHHhCCceEEEecCccceEEeEhhhhhcCcEEEEeCCCcCCChhhcccccceee
Confidence 34556666666544 12322 55679999999999999987654
No 264
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=75.88 E-value=3.8 Score=32.47 Aligned_cols=43 Identities=9% Similarity=0.156 Sum_probs=32.4
Q ss_pred CCCCchhHHHHHHHHHHCCCeEEEEcCCCC--hHHHHHHHHhcCcc
Q 032106 1 MPSLYPHAKGILHALKDKGIDVAVASRSPS--PDIANTFLEKLNIK 44 (147)
Q Consensus 1 ~p~~~pgv~~~L~~L~~~g~~l~i~S~~~~--~~~~~~~l~~~gl~ 44 (147)
+|.+.|++.++++.+++.|+.+.+.||+.. .+.++. +...|+.
T Consensus 63 EPll~~~~~~ii~~~~~~g~~~~l~TNG~ll~~e~~~~-L~~~g~~ 107 (358)
T TIGR02109 63 EPLARPDLVELVAHARRLGLYTNLITSGVGLTEARLDA-LADAGLD 107 (358)
T ss_pred cccccccHHHHHHHHHHcCCeEEEEeCCccCCHHHHHH-HHhCCCC
Confidence 488899999999999999999999998852 233333 4445654
No 265
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=75.22 E-value=6.8 Score=30.10 Aligned_cols=30 Identities=30% Similarity=0.457 Sum_probs=26.2
Q ss_pred CCCCchhH-HHHHHHHHHCCCeEEEEcCCCC
Q 032106 1 MPSLYPHA-KGILHALKDKGIDVAVASRSPS 30 (147)
Q Consensus 1 ~p~~~pgv-~~~L~~L~~~g~~l~i~S~~~~ 30 (147)
+|.+.|+. .++++.+++.|+.+.+.||+..
T Consensus 135 EPll~~~~l~~l~~~~k~~g~~~~i~TnG~~ 165 (295)
T TIGR02494 135 EPLLQPEFALALLQACHERGIHTAVETSGFT 165 (295)
T ss_pred chhchHHHHHHHHHHHHHcCCcEeeeCCCCC
Confidence 47888986 6999999999999999999864
No 266
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=75.10 E-value=9.2 Score=28.21 Aligned_cols=40 Identities=25% Similarity=0.365 Sum_probs=29.6
Q ss_pred CCCCchhH-HHHHHHHHHCCCeEEEEcCCCC---hHHHHHHHHh
Q 032106 1 MPSLYPHA-KGILHALKDKGIDVAVASRSPS---PDIANTFLEK 40 (147)
Q Consensus 1 ~p~~~pgv-~~~L~~L~~~g~~l~i~S~~~~---~~~~~~~l~~ 40 (147)
+|.+.|+. .++++.+++.|+++.+.||+.. ...+..+++.
T Consensus 75 EPll~~~~~~~li~~~~~~g~~~~i~TNG~~~~~~~~~~~ll~~ 118 (235)
T TIGR02493 75 EPLLQPEFLSELFKACKELGIHTCLDTSGFLGGCTEAADELLEY 118 (235)
T ss_pred ccccCHHHHHHHHHHHHHCCCCEEEEcCCCCCccHHHHHHHHHh
Confidence 47888884 5999999999999999999942 2333444543
No 267
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=74.52 E-value=24 Score=23.96 Aligned_cols=95 Identities=13% Similarity=0.192 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhc-Cc---ccccc-cceecC--------CCCCcHHHHHHHHHHcCCC
Q 032106 7 HAKGILHALKDKGIDVAVASRSPSPDIANTFLEKL-NI---KSMFV-AKEIFS--------SWSHKTDHFQRIHSRTGVP 73 (147)
Q Consensus 7 gv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~-gl---~~~f~-~~~~~~--------~~kp~~~~~~~~~~~~~~~ 73 (147)
.+.+.+.....+|-++.++-|+.....+..+...+ ++ ...+. .+-... ..-..+.+-+.++..+.+.
T Consensus 23 ~aa~~i~~~~~~gg~i~~~G~G~S~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (138)
T PF13580_consen 23 KAADLIAEALRNGGRIFVCGNGHSAAIASHFAADLGGLFGVNRILLPAIALNDDALTAISNDLEYDEGFARQLLALYDIR 102 (138)
T ss_dssp HHHHHHHHHHHTT--EEEEESTHHHHHHHHHHHHHHCHSSSTSSS-SEEETTSTHHHHHHHHTTGGGTHHHHHHHHTT--
T ss_pred HHHHHHHHHHHCCCEEEEEcCchhhhHHHHHHHHHhcCcCCCcccccccccccchHhhhhcccchhhHHHHHHHHHcCCC
Confidence 44566666677889999999886433333333332 22 22111 110000 0122344557777788899
Q ss_pred CCcEEEE----eCCccc---HHHHHHcCCeEEEEC
Q 032106 74 FNSMLFF----DDEDRN---IDAVSKMGVTGILVG 101 (147)
Q Consensus 74 ~~~~v~V----gDs~~D---i~~a~~~Gi~~i~v~ 101 (147)
|.+++++ |.+++= ++.|++.|+.+|.++
T Consensus 103 ~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 103 PGDVLIVISNSGNSPNVIEAAEEAKERGMKVIALT 137 (138)
T ss_dssp TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 9998877 555553 566777899999874
No 268
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=74.46 E-value=19 Score=25.52 Aligned_cols=74 Identities=11% Similarity=0.138 Sum_probs=44.0
Q ss_pred HHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccceecCCCCC--cHHHHHHHHHHcCCCCCcEEEEeCCcc
Q 032106 8 AKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFSSWSH--KTDHFQRIHSRTGVPFNSMLFFDDEDR 85 (147)
Q Consensus 8 v~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~~~~~~kp--~~~~~~~~~~~~~~~~~~~v~VgDs~~ 85 (147)
+.++++.+...|.+++++-+. ++.++.+.+.+. ..|..+..++..-| ++.-.+.+++..+-...++|+||=+..
T Consensus 37 ~~~l~~~~~~~~~~ifllG~~--~~~~~~~~~~l~--~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~vglG~P 112 (172)
T PF03808_consen 37 FPDLLRRAEQRGKRIFLLGGS--EEVLEKAAANLR--RRYPGLRIVGYHHGYFDEEEEEAIINRINASGPDIVFVGLGAP 112 (172)
T ss_pred HHHHHHHHHHcCCeEEEEeCC--HHHHHHHHHHHH--HHCCCeEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCCC
Confidence 456777777888999999844 455554444432 22333323322111 455666666666666678888888765
No 269
>PF14106 DUF4279: Domain of unknown function (DUF4279)
Probab=74.27 E-value=12 Score=24.58 Aligned_cols=71 Identities=11% Similarity=0.050 Sum_probs=46.2
Q ss_pred HHHHHHcCCCCCcEEEEeCCcccHHHHHHcCCeEEEECCCCChHHHHHHHHHHHHhhccchhhHHHHHHhhc
Q 032106 64 QRIHSRTGVPFNSMLFFDDEDRNIDAVSKMGVTGILVGNGVNLGALRQGLTKFSQNWNTSQKNKQKWISKFS 135 (147)
Q Consensus 64 ~~~~~~~~~~~~~~v~VgDs~~Di~~a~~~Gi~~i~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 135 (147)
..+-+.+|+.|.+++..||...+-...+..+...+........ .+...+..+.+...-......+.++.|.
T Consensus 9 ~eiT~~Lgi~Pt~~~~kG~~~~~~~~~~~~~~W~~~~~~~~~~-dl~~~l~~ll~~L~~~~~~i~~l~~~~~ 79 (118)
T PF14106_consen 9 DEITRLLGIEPTETWRKGDRRSNPSRPRKESSWSLSSELEESS-DLEDHLEELLDRLEPKREIIKELKEKYN 79 (118)
T ss_pred HHHHHHHCCCceEEEecCCcccCCCcceeeceEEEecCCCCcc-CHHHHHHHHHHHHcccHHHHHHHHHhcC
Confidence 5677889999999999999988655222222222332222222 2667777888877777777777776665
No 270
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism]
Probab=74.15 E-value=33 Score=28.00 Aligned_cols=36 Identities=19% Similarity=0.296 Sum_probs=30.5
Q ss_pred HcCCCCCcEEEEeCCcc--cHHHHHHcCCeEEEECCCC
Q 032106 69 RTGVPFNSMLFFDDEDR--NIDAVSKMGVTGILVGNGV 104 (147)
Q Consensus 69 ~~~~~~~~~v~VgDs~~--Di~~a~~~Gi~~i~v~~~~ 104 (147)
+.|++|++++|=|.... ++..|.+.|+.++-+..-.
T Consensus 91 ~aG~~~~~I~f~g~~ks~~ei~~a~e~gi~~i~vdS~~ 128 (394)
T COG0019 91 AAGFPPERIVFSGPAKSEEEIAFALELGIKLINVDSEE 128 (394)
T ss_pred HcCCChhhEEECCCCCCHHHHHHHHHcCCcEEEeCCHH
Confidence 44899999999999977 7999999999988886633
No 271
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=73.73 E-value=14 Score=29.27 Aligned_cols=89 Identities=10% Similarity=0.063 Sum_probs=53.9
Q ss_pred hhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHH---------HhcC-----cccccccceecCCCCCcHHHHHHHHHHcC
Q 032106 6 PHAKGILHALKDKGIDVAVASRSPSPDIANTFL---------EKLN-----IKSMFVAKEIFSSWSHKTDHFQRIHSRTG 71 (147)
Q Consensus 6 pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l---------~~~g-----l~~~f~~~~~~~~~kp~~~~~~~~~~~~~ 71 (147)
|=+..+.+.|+++|++++|+|.++-... +... +..| +...+.. .+.-.+.-....+.++++++
T Consensus 52 P~v~~L~~~L~~~G~~~~IlSRGYg~~~-~~~~~~v~~~~~~~~~GDEp~lla~~~~~--~V~V~~dR~~~~~~~~~~~~ 128 (326)
T PF02606_consen 52 PLVIWLARLLQARGYRPAILSRGYGRKS-KGEPILVSDGSDAEEVGDEPLLLARKLPV--PVIVGPDRVAAARAALKEFP 128 (326)
T ss_pred HHHHHHHHHHHhcCCceEEEcCCCCCCC-CCCeEEEeCCCChhhhcCHHHHHHHhcCC--cEEEeCcHHHHHHHHHHHCC
Confidence 5577888999999999999997763211 1100 0000 0011110 01112344667777777776
Q ss_pred CCCCcEEEEeCCcccHHHHHHcCCeEEEE
Q 032106 72 VPFNSMLFFDDEDRNIDAVSKMGVTGILV 100 (147)
Q Consensus 72 ~~~~~~v~VgDs~~Di~~a~~~Gi~~i~v 100 (147)
.+++..+|+.-+..-.+...|-.+-.
T Consensus 129 ---~dviilDDGfQh~~L~rDl~Ivl~D~ 154 (326)
T PF02606_consen 129 ---ADVIILDDGFQHRRLKRDLDIVLVDA 154 (326)
T ss_pred ---CCEEEEcCCcccccccCCcEEEEEeC
Confidence 67999999999988777666655543
No 272
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=73.64 E-value=4.7 Score=32.25 Aligned_cols=43 Identities=9% Similarity=0.146 Sum_probs=32.6
Q ss_pred CCCCchhHHHHHHHHHHCCCeEEEEcCCCC--hHHHHHHHHhcCcc
Q 032106 1 MPSLYPHAKGILHALKDKGIDVAVASRSPS--PDIANTFLEKLNIK 44 (147)
Q Consensus 1 ~p~~~pgv~~~L~~L~~~g~~l~i~S~~~~--~~~~~~~l~~~gl~ 44 (147)
+|.+.|++.++++.+++.|+.+.+.||+.. .+.++ .+...|+.
T Consensus 72 EPll~~~~~~il~~~~~~g~~~~i~TNG~ll~~~~~~-~L~~~g~~ 116 (378)
T PRK05301 72 EPLLRKDLEELVAHARELGLYTNLITSGVGLTEARLA-ALKDAGLD 116 (378)
T ss_pred ccCCchhHHHHHHHHHHcCCcEEEECCCccCCHHHHH-HHHHcCCC
Confidence 488899999999999999999999998852 23333 34455654
No 273
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=73.64 E-value=6.5 Score=34.02 Aligned_cols=45 Identities=16% Similarity=0.208 Sum_probs=36.8
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCccc-cccc
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKS-MFVA 49 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~-~f~~ 49 (147)
++.|++.++|+.+.+. +.+.|+|=+. +..++.+++.++-.. ||..
T Consensus 201 KlRP~~~efL~~~skl-femhVyTmg~-R~YA~~i~~liDP~~~lF~d 246 (635)
T KOG0323|consen 201 KLRPFVHEFLKEANKL-FEMHVYTMGT-RDYALEIAKLIDPEGKYFGD 246 (635)
T ss_pred EeCccHHHHHHHHHhh-ceeEEEeccc-hHHHHHHHHHhCCCCccccc
Confidence 5779999999999987 9999999666 788888888877543 5654
No 274
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=73.06 E-value=40 Score=25.90 Aligned_cols=93 Identities=11% Similarity=0.166 Sum_probs=55.2
Q ss_pred chhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccc------------------eecCCCCCcHHHH-HH
Q 032106 5 YPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAK------------------EIFSSWSHKTDHF-QR 65 (147)
Q Consensus 5 ~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~------------------~~~~~~kp~~~~~-~~ 65 (147)
.+.+.++.+.+.+.|-++.+.+++.+ +..+........++-.+ .++..+=|-..-. ..
T Consensus 114 V~d~~ea~~~~~~~~~rVflt~G~~~---l~~f~~~~~~~~~~~Rvlp~~~~~~~~~~~~~p~~~Iia~~GPfs~~~n~a 190 (257)
T COG2099 114 VADIEEAAEAAKQLGRRVFLTTGRQN---LAHFVAADAHSHVLARVLPPPDVLAKCEDLGVPPARIIAMRGPFSEEDNKA 190 (257)
T ss_pred ecCHHHHHHHHhccCCcEEEecCccc---hHHHhcCcccceEEEEEcCchHHHHHHHhcCCChhhEEEecCCcChHHHHH
Confidence 45778888999888888888886653 33445544444444321 1111111222222 23
Q ss_pred HHHHcCCCCCcEEEEeCCcc------cHHHHHHcCCeEEEECCC
Q 032106 66 IHSRTGVPFNSMLFFDDEDR------NIDAVSKMGVTGILVGNG 103 (147)
Q Consensus 66 ~~~~~~~~~~~~v~VgDs~~------Di~~a~~~Gi~~i~v~~~ 103 (147)
+++++++ ++|.-=||-. =+.+|.++|+.+|++.++
T Consensus 191 ll~q~~i---d~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~Rp 231 (257)
T COG2099 191 LLEQYRI---DVVVTKNSGGAGGTYEKIEAARELGIPVIMIERP 231 (257)
T ss_pred HHHHhCC---CEEEEccCCcccCcHHHHHHHHHcCCcEEEEecC
Confidence 3445554 3455545443 399999999999999988
No 275
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=72.97 E-value=25 Score=23.45 Aligned_cols=83 Identities=19% Similarity=0.365 Sum_probs=47.1
Q ss_pred CCCCchhHHHHHHHHHHC---CCeEEEEcCCCCh--HHHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHHcCCCCC
Q 032106 1 MPSLYPHAKGILHALKDK---GIDVAVASRSPSP--DIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFN 75 (147)
Q Consensus 1 ~p~~~pgv~~~L~~L~~~---g~~l~i~S~~~~~--~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~ 75 (147)
+|.+.|+....+..+... ++++.+.||+... +.+ ..+..+++....-.++. .++..+....+ -+..+
T Consensus 55 ep~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~l-~~l~~~~~~~i~~~l~s-----~~~~~~~~~~~-~~~~~- 126 (166)
T PF04055_consen 55 EPTLHPDFIELLELLRKIKKRGIRISINTNGTLLDEELL-DELKKLGVDRIRISLES-----LDEESVLRIIN-RGKSF- 126 (166)
T ss_dssp TGGGSCHHHHHHHHHHHCTCTTEEEEEEEESTTHCHHHH-HHHHHTTCSEEEEEEBS-----SSHHHHHHHHS-STSHH-
T ss_pred CCCcchhHHHHHHHHHHhhccccceeeeccccchhHHHH-HHHHhcCccEEeccccc-----CCHHHhhhhhc-CCCCH-
Confidence 367788888888888876 9999999988753 333 34555664332211111 23332333322 11222
Q ss_pred cEEEEeCCcccHHHHHHcCCe
Q 032106 76 SMLFFDDEDRNIDAVSKMGVT 96 (147)
Q Consensus 76 ~~v~VgDs~~Di~~a~~~Gi~ 96 (147)
++...-++.++++|+.
T Consensus 127 -----~~~~~~l~~l~~~g~~ 142 (166)
T PF04055_consen 127 -----ERVLEALERLKEAGIP 142 (166)
T ss_dssp -----HHHHHHHHHHHHTTSE
T ss_pred -----HHHHHHHHHHHHcCCC
Confidence 2234567777788776
No 276
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=72.19 E-value=9.1 Score=31.32 Aligned_cols=45 Identities=22% Similarity=0.426 Sum_probs=33.0
Q ss_pred CCCCchhHHHHHHHHHHCCCeEEEE-cCCC---ChHHHHHHHHhcCcccc
Q 032106 1 MPSLYPHAKGILHALKDKGIDVAVA-SRSP---SPDIANTFLEKLNIKSM 46 (147)
Q Consensus 1 ~p~~~pgv~~~L~~L~~~g~~l~i~-S~~~---~~~~~~~~l~~~gl~~~ 46 (147)
+|-.+|.+.++|+.+++.|++++|. ||+. .++.++. +..++++..
T Consensus 84 epl~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~~-L~~~gld~v 132 (404)
T TIGR03278 84 DVSCYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEF-LIDNGVREV 132 (404)
T ss_pred ccccCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHHH-HHHcCCCEE
Confidence 3778999999999999999999995 9854 3444444 444566543
No 277
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=72.09 E-value=7.3 Score=28.78 Aligned_cols=35 Identities=17% Similarity=0.223 Sum_probs=28.2
Q ss_pred HHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcc
Q 032106 8 AKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIK 44 (147)
Q Consensus 8 v~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~ 44 (147)
..++++ ++++|++++++|++. ...++.++..+++.
T Consensus 20 ~~~~~~-~~~~gi~~viaTGR~-~~~v~~~~~~l~l~ 54 (236)
T TIGR02471 20 FVELLR-GSGDAVGFGIATGRS-VESAKSRYAKLNLP 54 (236)
T ss_pred HHHHHH-hcCCCceEEEEeCCC-HHHHHHHHHhCCCC
Confidence 346666 688899999999887 67778888888874
No 278
>PRK15108 biotin synthase; Provisional
Probab=71.63 E-value=12 Score=29.87 Aligned_cols=42 Identities=10% Similarity=0.183 Sum_probs=26.9
Q ss_pred chhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCccccc
Q 032106 5 YPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMF 47 (147)
Q Consensus 5 ~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f 47 (147)
++.+.++++.+++.|+.+. +|++......-..|+..|++.|-
T Consensus 110 ~e~i~~~i~~ik~~~i~v~-~s~G~ls~e~l~~LkeAGld~~n 151 (345)
T PRK15108 110 MPYLEQMVQGVKAMGLETC-MTLGTLSESQAQRLANAGLDYYN 151 (345)
T ss_pred HHHHHHHHHHHHhCCCEEE-EeCCcCCHHHHHHHHHcCCCEEe
Confidence 4667788888887777654 67655433334456677887553
No 279
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=71.21 E-value=8.2 Score=25.75 Aligned_cols=17 Identities=29% Similarity=0.292 Sum_probs=8.9
Q ss_pred HHHHHHHHCCCeEEEEc
Q 032106 10 GILHALKDKGIDVAVAS 26 (147)
Q Consensus 10 ~~L~~L~~~g~~l~i~S 26 (147)
++++...+.+..+.++|
T Consensus 41 ~~~~~a~~~~~d~V~iS 57 (122)
T cd02071 41 EIVEAAIQEDVDVIGLS 57 (122)
T ss_pred HHHHHHHHcCCCEEEEc
Confidence 44555555555555555
No 280
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=70.42 E-value=31 Score=27.47 Aligned_cols=62 Identities=18% Similarity=0.255 Sum_probs=38.6
Q ss_pred CCCCchhHHHHHHHHHHCCC-eEEEEcCCCChHHHHHHHHhcCcccccccceecCCCCCcHHHHHHHH
Q 032106 1 MPSLYPHAKGILHALKDKGI-DVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIH 67 (147)
Q Consensus 1 ~p~~~pgv~~~L~~L~~~g~-~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~ 67 (147)
+|.+-.++.++++.+++.++ .+++-||+..-.-....|+..|+...-...+. -+++.|..+-
T Consensus 69 EPllR~dl~eIi~~l~~~~~~~islTTNG~~L~~~a~~Lk~AGl~rVNVSLDs-----ld~e~f~~IT 131 (322)
T COG2896 69 EPLLRKDLDEIIARLARLGIRDLSLTTNGVLLARRAADLKEAGLDRVNVSLDS-----LDPEKFRKIT 131 (322)
T ss_pred CchhhcCHHHHHHHHhhcccceEEEecchhhHHHHHHHHHHcCCcEEEeeccc-----CCHHHHHHHh
Confidence 47888899999999988654 46777777533333345777787654221111 3556666554
No 281
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=69.60 E-value=30 Score=28.61 Aligned_cols=43 Identities=12% Similarity=0.188 Sum_probs=29.8
Q ss_pred CCCCchh-HHHHHHHHHHC--CCeEEEEcCCCC-hHHHHHHHHhcCcc
Q 032106 1 MPSLYPH-AKGILHALKDK--GIDVAVASRSPS-PDIANTFLEKLNIK 44 (147)
Q Consensus 1 ~p~~~pg-v~~~L~~L~~~--g~~l~i~S~~~~-~~~~~~~l~~~gl~ 44 (147)
+|-+.|+ +.++|..+++. |+.++|.||+.. +..++. +..+|++
T Consensus 89 EPLl~~e~~~~~l~~~~~~~~~i~i~lsTNG~~l~e~i~~-L~~~gvd 135 (442)
T TIGR01290 89 DPLANIGKTFQTLELVARQLPDVKLCLSTNGLMLPEHVDR-LVDLGVG 135 (442)
T ss_pred CcccCccccHHHHHHHHHhcCCCeEEEECCCCCCHHHHHH-HHHCCCC
Confidence 3666654 78899999887 899999999863 344444 3345665
No 282
>PLN03017 trehalose-phosphatase
Probab=69.36 E-value=33 Score=27.77 Aligned_cols=44 Identities=23% Similarity=0.301 Sum_probs=31.0
Q ss_pred CcHHHHHHHHHHcCCCC---CcEEEEeCCcccHHHHHHc---C-CeEEEEC
Q 032106 58 HKTDHFQRIHSRTGVPF---NSMLFFDDEDRNIDAVSKM---G-VTGILVG 101 (147)
Q Consensus 58 p~~~~~~~~~~~~~~~~---~~~v~VgDs~~Di~~a~~~---G-i~~i~v~ 101 (147)
.|....+.+++.++... .-.+||||...|-.+.+.+ | -..|.|+
T Consensus 283 dKG~Av~~LL~~l~~~~~~~~~pvyiGDD~TDEDaF~~L~~~~~G~gI~VG 333 (366)
T PLN03017 283 DKGKALEFLLESLGFGNTNNVFPVYIGDDRTDEDAFKMLRDRGEGFGILVS 333 (366)
T ss_pred CHHHHHHHHHHhcccccCCCceEEEeCCCCccHHHHHHHhhcCCceEEEEC
Confidence 56677777777777542 3589999999998777655 2 2456666
No 283
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=69.12 E-value=49 Score=25.22 Aligned_cols=95 Identities=11% Similarity=0.175 Sum_probs=53.1
Q ss_pred CchhHHHHHHHHHHCCCeEE-EEcCCCChHHHHHHHHhcC-cccccccceecCCCC-----CcHHHHHHHHHHcCCCCCc
Q 032106 4 LYPHAKGILHALKDKGIDVA-VASRSPSPDIANTFLEKLN-IKSMFVAKEIFSSWS-----HKTDHFQRIHSRTGVPFNS 76 (147)
Q Consensus 4 ~~pgv~~~L~~L~~~g~~l~-i~S~~~~~~~~~~~l~~~g-l~~~f~~~~~~~~~k-----p~~~~~~~~~~~~~~~~~~ 76 (147)
++....++++.+++.|+... +++-....+.++.+++... +.-+... ..++..+ +-.+.+..+.+..+.
T Consensus 125 p~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs~-~G~TG~~~~~~~~~~~~i~~lr~~~~~---- 199 (256)
T TIGR00262 125 PLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVSR-AGVTGARNRAASALNELVKRLKAYSAK---- 199 (256)
T ss_pred ChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEEC-CCCCCCcccCChhHHHHHHHHHhhcCC----
Confidence 44677788899999998755 5664432334445555432 3212121 2222211 222333333333332
Q ss_pred EEEEeCCcc---cHHHHHHcCCeEEEECCC
Q 032106 77 MLFFDDEDR---NIDAVSKMGVTGILVGNG 103 (147)
Q Consensus 77 ~v~VgDs~~---Di~~a~~~Gi~~i~v~~~ 103 (147)
-++||=+.+ ++..+.++|...+.++..
T Consensus 200 pi~vgfGI~~~e~~~~~~~~GADgvVvGSa 229 (256)
T TIGR00262 200 PVLVGFGISKPEQVKQAIDAGADGVIVGSA 229 (256)
T ss_pred CEEEeCCCCCHHHHHHHHHcCCCEEEECHH
Confidence 377887765 677778889999888764
No 284
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=68.65 E-value=14 Score=29.96 Aligned_cols=128 Identities=15% Similarity=0.098 Sum_probs=70.1
Q ss_pred chhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccceecCCCCC-cHHHHHHHHHHcCCCCCcEEEEeCC
Q 032106 5 YPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFSSWSH-KTDHFQRIHSRTGVPFNSMLFFDDE 83 (147)
Q Consensus 5 ~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~~~~~~kp-~~~~~~~~~~~~~~~~~~~v~VgDs 83 (147)
-||+--+|..+. ..+.++|+|+.. .-.+..+++.++-..|...--..++.+- ++..+ +=+.+++.+++.+|+|+=.
T Consensus 216 RPgvD~FL~~~a-~~yEIVi~sse~-gmt~~pl~d~lDP~g~IsYkLfr~~t~y~~G~Hv-Kdls~LNRdl~kVivVd~d 292 (393)
T KOG2832|consen 216 RPGVDYFLGHLA-KYYEIVVYSSEQ-GMTVFPLLDALDPKGYISYKLFRGATKYEEGHHV-KDLSKLNRDLQKVIVVDFD 292 (393)
T ss_pred CchHHHHHHhhc-ccceEEEEecCC-ccchhhhHhhcCCcceEEEEEecCcccccCccch-hhhhhhccccceeEEEEcc
Confidence 589999999997 459999999554 4555678888876665544211111111 12222 2257889999999999866
Q ss_pred cccHHHHHHcCCe-EEEEC-CCCChHH-HHHHHHHHHHhhccc-hhhHHHHHHhhcCCCC
Q 032106 84 DRNIDAVSKMGVT-GILVG-NGVNLGA-LRQGLTKFSQNWNTS-QKNKQKWISKFSQKPD 139 (147)
Q Consensus 84 ~~Di~~a~~~Gi~-~i~v~-~~~~~~~-~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~ 139 (147)
.+--. .+-. ++.+. |..+.+. ..--|..|.+..... .+|...-..+|+|..+
T Consensus 293 ~~~~~----l~P~N~l~l~~W~Gn~dDt~L~dL~~FL~~ia~~~~eDvR~vL~~y~~~~D 348 (393)
T KOG2832|consen 293 ANSYK----LQPENMLPLEPWSGNDDDTSLFDLLAFLEYIAQQQVEDVRPVLQSYSQEKD 348 (393)
T ss_pred ccccc----cCcccccccCcCCCCcccchhhhHHHHHHHHHHccHHHHHHHHHHhccccC
Confidence 55221 1221 33333 3222221 222234454444333 4445445666766443
No 285
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=68.05 E-value=6.5 Score=29.18 Aligned_cols=48 Identities=21% Similarity=0.262 Sum_probs=30.3
Q ss_pred CCCcHHHHHHHHHHcCCC---CCcEEEEeCCcccHHHHHHcCC-----eEEEECCC
Q 032106 56 WSHKTDHFQRIHSRTGVP---FNSMLFFDDEDRNIDAVSKMGV-----TGILVGNG 103 (147)
Q Consensus 56 ~kp~~~~~~~~~~~~~~~---~~~~v~VgDs~~Di~~a~~~Gi-----~~i~v~~~ 103 (147)
...|......+++.++.. ++-++|+||...|-.+-+.+.- ..+.|...
T Consensus 163 ~~~KG~av~~ll~~~~~~~~~~~~~l~~GDD~tDE~~f~~~~~~~~~~~~i~V~~~ 218 (235)
T PF02358_consen 163 GVNKGSAVRRLLEELPFAGPKPDFVLYIGDDRTDEDAFRALRELEEGGFGIKVGSV 218 (235)
T ss_dssp T--HHHHHHHHHTTS---------EEEEESSHHHHHHHHTTTTS----EEEEES--
T ss_pred CCChHHHHHHHHHhcCccccccceeEEecCCCCCHHHHHHHHhcccCCCCeEEEee
Confidence 445889999999998876 7889999999999887777543 24555543
No 286
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=67.62 E-value=49 Score=24.73 Aligned_cols=113 Identities=16% Similarity=0.292 Sum_probs=63.7
Q ss_pred hhHHHHHHHHHHCCCeEEEEcCCCCh-HHHHHHHHhcCcccccccceecCCCCCcHHHHHHHHH--Hc--CCCCCcEEEE
Q 032106 6 PHAKGILHALKDKGIDVAVASRSPSP-DIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHS--RT--GVPFNSMLFF 80 (147)
Q Consensus 6 pgv~~~L~~L~~~g~~l~i~S~~~~~-~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~--~~--~~~~~~~v~V 80 (147)
+...++|+.+++.|++.+|+=|...+ +.++.++...++--.+...-.++..+=-+..+.++.+ ++ ...++--+-|
T Consensus 97 ~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeV 176 (223)
T PRK08745 97 RHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEI 176 (223)
T ss_pred ccHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEE
Confidence 34678999999999999999976532 1233344433322122221223334444555554433 11 1122344777
Q ss_pred eCCcc--cHHHHHHcCCeEEEECCCC-ChHHHHHHHHHHHH
Q 032106 81 DDEDR--NIDAVSKMGVTGILVGNGV-NLGALRQGLTKFSQ 118 (147)
Q Consensus 81 gDs~~--Di~~a~~~Gi~~i~v~~~~-~~~~~~~~l~~~~~ 118 (147)
+=+.+ .+....++|...+-+++.. ..+...+.++.+++
T Consensus 177 DGGI~~eti~~l~~aGaDi~V~GSaiF~~~d~~~~~~~lr~ 217 (223)
T PRK08745 177 DGGVKADNIGAIAAAGADTFVAGSAIFNAPDYAQVIAQMRA 217 (223)
T ss_pred ECCCCHHHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHH
Confidence 77666 5778888999988887653 22345555555554
No 287
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=67.40 E-value=7.8 Score=28.74 Aligned_cols=30 Identities=27% Similarity=0.406 Sum_probs=25.0
Q ss_pred CCCCchhHHHHHHHHHHCCCeEEEEcCCCC
Q 032106 1 MPSLYPHAKGILHALKDKGIDVAVASRSPS 30 (147)
Q Consensus 1 ~p~~~pgv~~~L~~L~~~g~~l~i~S~~~~ 30 (147)
+|-..|++.++|+.|++.|+++.+=||+.-
T Consensus 81 EP~~~~~l~~Ll~~l~~~g~~~~lETngti 110 (212)
T COG0602 81 EPLLQPNLLELLELLKRLGFRIALETNGTI 110 (212)
T ss_pred cCCCcccHHHHHHHHHhCCceEEecCCCCc
Confidence 365667899999999999999999998763
No 288
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=66.98 E-value=15 Score=28.73 Aligned_cols=45 Identities=20% Similarity=0.221 Sum_probs=31.5
Q ss_pred CCCCchhHHHHHHHHHH-CCC-eEEEEcCCCChHHHHHHHHhcCccc
Q 032106 1 MPSLYPHAKGILHALKD-KGI-DVAVASRSPSPDIANTFLEKLNIKS 45 (147)
Q Consensus 1 ~p~~~pgv~~~L~~L~~-~g~-~l~i~S~~~~~~~~~~~l~~~gl~~ 45 (147)
+|.+.|++.++++.+++ .|+ .+.|.||+..-...-..+...|+..
T Consensus 69 EPll~~~l~~li~~i~~~~gi~~v~itTNG~ll~~~~~~L~~~gl~~ 115 (334)
T TIGR02666 69 EPLLRKDLVELVARLAALPGIEDIALTTNGLLLARHAKDLKEAGLKR 115 (334)
T ss_pred cccccCCHHHHHHHHHhcCCCCeEEEEeCchhHHHHHHHHHHcCCCe
Confidence 48888999999999987 578 8999998753221123355566643
No 289
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=65.80 E-value=13 Score=28.19 Aligned_cols=38 Identities=24% Similarity=0.297 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCccc
Q 032106 7 HAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKS 45 (147)
Q Consensus 7 gv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~ 45 (147)
.+...+..|++.|+++..||+.. ......+.+.+|+..
T Consensus 27 pA~pv~~el~d~G~~Vi~~SSKT-~aE~~~l~~~l~v~~ 64 (274)
T COG3769 27 PAAPVLLELKDAGVPVILCSSKT-RAEMLYLQKSLGVQG 64 (274)
T ss_pred ccchHHHHHHHcCCeEEEeccch-HHHHHHHHHhcCCCC
Confidence 36678999999999999999776 555567888888863
No 290
>PF05240 APOBEC_C: APOBEC-like C-terminal domain; InterPro: IPR007904 This domain is found at the C terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. C to U RNA editing of mammalian apolipoprotein B (apoB) RNA is a site-specific posttranscriptional modification in which a single cytidine is enzymatically deaminated to uridine, thereby generating a UAA stop codon in the edited mRNA. The function of this domain is currently unknown.; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 2NYT_D.
Probab=65.76 E-value=10 Score=22.05 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHCCCeEEEEc
Q 032106 6 PHAKGILHALKDKGIDVAVAS 26 (147)
Q Consensus 6 pgv~~~L~~L~~~g~~l~i~S 26 (147)
|+-.+.|..|.++|++|.|.|
T Consensus 2 ~~~qegLr~L~~aG~~v~iM~ 22 (55)
T PF05240_consen 2 PDYQEGLRRLCQAGAQVSIMT 22 (55)
T ss_dssp HHHHHHHHHHHHTT-EEEE--
T ss_pred cHHHHHHHHHHHCCCeEEecC
Confidence 567899999999999999999
No 291
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=65.60 E-value=65 Score=26.63 Aligned_cols=112 Identities=13% Similarity=0.190 Sum_probs=65.4
Q ss_pred HHHHHHHHHHC--CCeEEEEcCCCChHHHHHHHHhcCcc---cccccceecCCCCCcHHHHHHHHHHcCCCCCcEEEEeC
Q 032106 8 AKGILHALKDK--GIDVAVASRSPSPDIANTFLEKLNIK---SMFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLFFDD 82 (147)
Q Consensus 8 v~~~L~~L~~~--g~~l~i~S~~~~~~~~~~~l~~~gl~---~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgD 82 (147)
+..++++|++. +.++.+-|-++ .. .+.+-+.++-. .|+. -..+......+++ +.|+-+|+++-
T Consensus 65 ~~pLv~~l~~~~P~~~ilvTt~T~-Tg-~e~a~~~~~~~v~h~YlP--------~D~~~~v~rFl~~--~~P~l~Ii~Et 132 (419)
T COG1519 65 ALPLVRALRERFPDLRILVTTMTP-TG-AERAAALFGDSVIHQYLP--------LDLPIAVRRFLRK--WRPKLLIIMET 132 (419)
T ss_pred HHHHHHHHHHhCCCCCEEEEecCc-cH-HHHHHHHcCCCeEEEecC--------cCchHHHHHHHHh--cCCCEEEEEec
Confidence 34677888887 55665555333 22 34555555521 1222 2456667777664 56777888888
Q ss_pred Ccc--cHHHHHHcCCeEEEECCCCCh---HHH-------HHHHHHHHHhhccchhhHHHHH
Q 032106 83 EDR--NIDAVSKMGVTGILVGNGVNL---GAL-------RQGLTKFSQNWNTSQKNKQKWI 131 (147)
Q Consensus 83 s~~--Di~~a~~~Gi~~i~v~~~~~~---~~~-------~~~l~~~~~~~~~~~~~~~~~~ 131 (147)
-.| =|..+++.|++.+.++--... ..| ...++.+..-..-+..|++|+.
T Consensus 133 ElWPnli~e~~~~~~p~~LvNaRLS~rS~~~y~k~~~~~~~~~~~i~li~aQse~D~~Rf~ 193 (419)
T COG1519 133 ELWPNLINELKRRGIPLVLVNARLSDRSFARYAKLKFLARLLFKNIDLILAQSEEDAQRFR 193 (419)
T ss_pred cccHHHHHHHHHcCCCEEEEeeeechhhhHHHHHHHHHHHHHHHhcceeeecCHHHHHHHH
Confidence 777 489999999999999632211 112 2222222222355677777776
No 292
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=65.55 E-value=14 Score=25.23 Aligned_cols=21 Identities=14% Similarity=0.115 Sum_probs=13.3
Q ss_pred HHHHHHHHHHCCCeEEEEcCC
Q 032106 8 AKGILHALKDKGIDVAVASRS 28 (147)
Q Consensus 8 v~~~L~~L~~~g~~l~i~S~~ 28 (147)
..++++...+.+..+.++|+.
T Consensus 42 ~e~~v~aa~e~~adii~iSsl 62 (132)
T TIGR00640 42 PEEIARQAVEADVHVVGVSSL 62 (132)
T ss_pred HHHHHHHHHHcCCCEEEEcCc
Confidence 346666666777766666643
No 293
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=65.28 E-value=44 Score=27.13 Aligned_cols=82 Identities=20% Similarity=0.277 Sum_probs=51.7
Q ss_pred HHHHHHHHHHC--CCe--EEEEcCCCChHHHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHHcCCCCCcEEEEeCC
Q 032106 8 AKGILHALKDK--GID--VAVASRSPSPDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLFFDDE 83 (147)
Q Consensus 8 v~~~L~~L~~~--g~~--l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgDs 83 (147)
+.+-++.|++. +++ .++=+|.+ +.++ ..+...|.. ||. .. ..+ + ..+.+.|+++++++|-|-.
T Consensus 23 i~~~~~~l~~~lp~~~~~YAvKaN~~-~~il-~~l~~~G~g--~Dv---aS----~gE-l-~~al~~G~~~~~Iif~gp~ 89 (394)
T cd06831 23 IVKKHSQWQTVMAQIKPFYTVRCNST-PAVL-EILAALGTG--FAC---SS----KNE-M-ALVQELGVSPENIIYTNPC 89 (394)
T ss_pred HHHHHHHHHHHCCCCeEEeeeccCCC-HHHH-HHHHHcCCC--eEe---CC----HHH-H-HHHHhcCCCcCCEEEeCCC
Confidence 34445555442 333 46667666 6665 446677753 554 11 122 2 3334679999999999987
Q ss_pred cc--cHHHHHHcCCeEEEECC
Q 032106 84 DR--NIDAVSKMGVTGILVGN 102 (147)
Q Consensus 84 ~~--Di~~a~~~Gi~~i~v~~ 102 (147)
.. +++.|.+.|+..+-+..
T Consensus 90 K~~~~l~~a~~~Gv~~i~vDS 110 (394)
T cd06831 90 KQASQIKYAAKVGVNIMTCDN 110 (394)
T ss_pred CCHHHHHHHHHCCCCEEEECC
Confidence 55 79999999998776644
No 294
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=65.08 E-value=23 Score=24.41 Aligned_cols=48 Identities=29% Similarity=0.381 Sum_probs=39.3
Q ss_pred CCCCcEEEEeCCcccHHHHHHcCCeEEEECCCCChHHHHHHHHHHHHh
Q 032106 72 VPFNSMLFFDDEDRNIDAVSKMGVTGILVGNGVNLGALRQGLTKFSQN 119 (147)
Q Consensus 72 ~~~~~~v~VgDs~~Di~~a~~~Gi~~i~v~~~~~~~~~~~~l~~~~~~ 119 (147)
-...++.|..|-..-+...++.|+..+.+.++..++-..++|+.|...
T Consensus 38 ~~g~e~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~iA~q~L~~fkvk 85 (144)
T KOG4549|consen 38 SKGEEMIFYDDIRRILVDLKKLGVTLIHASRTMAPQIASQGLETFKVK 85 (144)
T ss_pred cCcceeeeccchhHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhccC
Confidence 455778899999999999999999999999988887777777766554
No 295
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=65.03 E-value=7.5 Score=28.13 Aligned_cols=72 Identities=15% Similarity=0.164 Sum_probs=26.3
Q ss_pred HHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcC-----cccccccceecCCCCCcHHHHHHHHHHcCCCCCcEEEEeCCc
Q 032106 10 GILHALKDKGIDVAVASRSPSPDIANTFLEKLN-----IKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLFFDDED 84 (147)
Q Consensus 10 ~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~g-----l~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgDs~ 84 (147)
.+|..++++|++++++...-..... .....+. +...|+. ++.. +.. -..-+.++|+.++++...||-.
T Consensus 109 nll~~a~~~~ip~~LvNarls~~s~-~~~~~~~~~~r~~l~~f~~--i~aq---s~~-da~r~~~lG~~~~~v~v~GnlK 181 (186)
T PF04413_consen 109 NLLREAKRRGIPVVLVNARLSERSF-RRYRRFPFLFRPLLSRFDR--ILAQ---SEA-DAERFRKLGAPPERVHVTGNLK 181 (186)
T ss_dssp HHHHH-----S-EEEEEE---------------HHHHHHGGG-SE--EEES---SHH-HHHHHHTTT-S--SEEE---GG
T ss_pred HHHHHHhhcCCCEEEEeeeeccccc-hhhhhhHHHHHHHHHhCCE--EEEC---CHH-HHHHHHHcCCCcceEEEeCcch
Confidence 5678888999999999855432221 1122121 1123333 2222 333 3344578899999999999988
Q ss_pred ccHH
Q 032106 85 RNID 88 (147)
Q Consensus 85 ~Di~ 88 (147)
.|..
T Consensus 182 fd~~ 185 (186)
T PF04413_consen 182 FDQA 185 (186)
T ss_dssp G---
T ss_pred hccc
Confidence 8764
No 296
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=64.78 E-value=14 Score=24.16 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHCCCeEEEEcCCCC
Q 032106 6 PHAKGILHALKDKGIDVAVASRSPS 30 (147)
Q Consensus 6 pgv~~~L~~L~~~g~~l~i~S~~~~ 30 (147)
+++.++++.++++|.++..+|+...
T Consensus 60 ~e~~~~~~~a~~~g~~vi~iT~~~~ 84 (126)
T cd05008 60 ADTLAALRLAKEKGAKTVAITNVVG 84 (126)
T ss_pred HHHHHHHHHHHHcCCeEEEEECCCC
Confidence 5788999999999999999997653
No 297
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=64.22 E-value=58 Score=24.28 Aligned_cols=109 Identities=15% Similarity=0.252 Sum_probs=59.5
Q ss_pred HHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhc--Cccccc---ccceecCCCCCcHHHHHHHHHHcCCCCCcEEEEeC
Q 032106 8 AKGILHALKDKGIDVAVASRSPSPDIANTFLEKL--NIKSMF---VAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLFFDD 82 (147)
Q Consensus 8 v~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~--gl~~~f---~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgD 82 (147)
+.++++.+++.|.+++|+-|... .. +.+...+ +..+++ ..--.+...+-.+..+.++.+--...+.-.+.|+=
T Consensus 103 ~~~~l~~ik~~G~~~gval~p~t-~~-e~l~~~l~~~~vD~Vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~I~VdG 180 (228)
T PTZ00170 103 PKAVARKIREAGMKVGVAIKPKT-PV-EVLFPLIDTDLVDMVLVMTVEPGFGGQSFMHDMMPKVRELRKRYPHLNIQVDG 180 (228)
T ss_pred HHHHHHHHHHCCCeEEEEECCCC-CH-HHHHHHHccchhhhHHhhhcccCCCCcEecHHHHHHHHHHHHhcccCeEEECC
Confidence 67889999999999998876542 22 3333333 322222 11011222333344444443321222233455655
Q ss_pred Ccc--cHHHHHHcCCeEEEECCCCC-hHHHHHHHHHHHH
Q 032106 83 EDR--NIDAVSKMGVTGILVGNGVN-LGALRQGLTKFSQ 118 (147)
Q Consensus 83 s~~--Di~~a~~~Gi~~i~v~~~~~-~~~~~~~l~~~~~ 118 (147)
+.+ .+..+.++|...+-+++... .+...+.++.+.+
T Consensus 181 GI~~~ti~~~~~aGad~iVvGsaI~~a~d~~~~~~~i~~ 219 (228)
T PTZ00170 181 GINLETIDIAADAGANVIVAGSSIFKAKDRKQAIELLRE 219 (228)
T ss_pred CCCHHHHHHHHHcCCCEEEEchHHhCCCCHHHHHHHHHH
Confidence 555 68888999999998887642 2345555555554
No 298
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=64.16 E-value=57 Score=24.25 Aligned_cols=113 Identities=13% Similarity=0.252 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHHCCCeEEEEcCCCCh-HHHHHHHHhcCcccccccceecCCCCCcHHHHHHHHH---HcCC-CCCcEEEE
Q 032106 6 PHAKGILHALKDKGIDVAVASRSPSP-DIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHS---RTGV-PFNSMLFF 80 (147)
Q Consensus 6 pgv~~~L~~L~~~g~~l~i~S~~~~~-~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~---~~~~-~~~~~v~V 80 (147)
+...++|+.+++.|.+.+++-|...+ +.++.++...++--++...-.++..+--+..++.+.+ ...- ..+--+.|
T Consensus 93 ~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~v 172 (220)
T PRK08883 93 EHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEI 172 (220)
T ss_pred ccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEE
Confidence 45678999999999999999866532 2233344443332222221122233334444433332 2110 11122334
Q ss_pred eCCcc--cHHHHHHcCCeEEEECCCC-ChHHHHHHHHHHHH
Q 032106 81 DDEDR--NIDAVSKMGVTGILVGNGV-NLGALRQGLTKFSQ 118 (147)
Q Consensus 81 gDs~~--Di~~a~~~Gi~~i~v~~~~-~~~~~~~~l~~~~~ 118 (147)
+=+.+ ++....++|...+.++... ..+...+.++++++
T Consensus 173 dGGI~~eni~~l~~aGAd~vVvGSaIf~~~d~~~~i~~l~~ 213 (220)
T PRK08883 173 DGGVKVDNIREIAEAGADMFVAGSAIFGQPDYKAVIDEMRA 213 (220)
T ss_pred ECCCCHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHH
Confidence 33333 7888889999988887652 23344455555544
No 299
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=63.75 E-value=13 Score=24.46 Aligned_cols=26 Identities=19% Similarity=0.335 Sum_probs=22.5
Q ss_pred chhHHHHHHHHHHCCCeEEEEcCCCC
Q 032106 5 YPHAKGILHALKDKGIDVAVASRSPS 30 (147)
Q Consensus 5 ~pgv~~~L~~L~~~g~~l~i~S~~~~ 30 (147)
-+++.++++.++++|.++..+|+...
T Consensus 60 t~~~~~~~~~a~~~g~~vi~iT~~~~ 85 (128)
T cd05014 60 TDELLNLLPHLKRRGAPIIAITGNPN 85 (128)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 46788999999999999999997664
No 300
>PLN03017 trehalose-phosphatase
Probab=63.60 E-value=14 Score=29.91 Aligned_cols=33 Identities=15% Similarity=0.160 Sum_probs=26.1
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHH
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTF 37 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~ 37 (147)
.+-|++.++|+.|. ++++++|+|++. ...+..+
T Consensus 133 ~i~~~~~~aL~~La-~~~~vaIvSGR~-~~~l~~~ 165 (366)
T PLN03017 133 FMSSKMRRTVKKLA-KCFPTAIVTGRC-IDKVYNF 165 (366)
T ss_pred cCCHHHHHHHHHHh-cCCcEEEEeCCC-HHHHHHh
Confidence 46789999999999 779999999777 4444444
No 301
>PLN02151 trehalose-phosphatase
Probab=63.54 E-value=35 Score=27.51 Aligned_cols=36 Identities=14% Similarity=0.200 Sum_probs=24.9
Q ss_pred CcHHHHHHHHHHcCCCCC---cEEEEeCCcccHHHHHHc
Q 032106 58 HKTDHFQRIHSRTGVPFN---SMLFFDDEDRNIDAVSKM 93 (147)
Q Consensus 58 p~~~~~~~~~~~~~~~~~---~~v~VgDs~~Di~~a~~~ 93 (147)
.|....+.+++.++..-. -.+||||...|-.+.+.+
T Consensus 269 dKG~Av~~Ll~~~~~~~~~~~~pvyiGDD~TDEDaF~~L 307 (354)
T PLN02151 269 DKGKALEFLLESLGYANCTDVFPIYIGDDRTDEDAFKIL 307 (354)
T ss_pred CHHHHHHHHHHhcccccCCCCeEEEEcCCCcHHHHHHHH
Confidence 456666777776664322 289999999997776654
No 302
>COG4483 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.94 E-value=6.8 Score=23.54 Aligned_cols=26 Identities=15% Similarity=0.450 Sum_probs=21.5
Q ss_pred HHHHHHHcCCCCCcEEEEeCCcccHHHHHH
Q 032106 63 FQRIHSRTGVPFNSMLFFDDEDRNIDAVSK 92 (147)
Q Consensus 63 ~~~~~~~~~~~~~~~v~VgDs~~Di~~a~~ 92 (147)
.++.++++|+ ++++||...||++.+-
T Consensus 7 VqQlLK~~G~----ivyfg~r~~~iemm~~ 32 (68)
T COG4483 7 VQQLLKKFGI----IVYFGKRLYDIEMMQI 32 (68)
T ss_pred HHHHHHHCCe----eeecCCHHHHHHHHHH
Confidence 3677888887 8999999999998764
No 303
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=62.94 E-value=6.6 Score=31.32 Aligned_cols=50 Identities=16% Similarity=0.294 Sum_probs=36.5
Q ss_pred CCCCCcHHHHHHHHHH--------cCC-CCCcEEEEeCCcc-cHHHHH---------------HcCCeEEEECCC
Q 032106 54 SSWSHKTDHFQRIHSR--------TGV-PFNSMLFFDDEDR-NIDAVS---------------KMGVTGILVGNG 103 (147)
Q Consensus 54 ~~~kp~~~~~~~~~~~--------~~~-~~~~~v~VgDs~~-Di~~a~---------------~~Gi~~i~v~~~ 103 (147)
...||..-.|.++... .+. .+..+.||||.+- |+..|. .-||.+|+|..|
T Consensus 268 t~GKPt~ltY~~A~~vl~~~ak~~~~~~~~k~lymvGDNP~sDv~GA~lf~~yap~~~~g~~~~~~w~SILV~TG 342 (389)
T KOG1618|consen 268 TLGKPTKLTYDYAEDVLRRQAKRRGGAAPIKKLYMVGDNPMSDVRGANLFHQYAPELGAGGSANYGWISILVRTG 342 (389)
T ss_pred ccCCCceehHHhHHHHHHHHHHhhcccCCcceeeeecCCCcccccccccccccccccccccccCCCceEEEEeee
Confidence 3478888777555432 222 4588999999977 999996 678999988765
No 304
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=62.42 E-value=23 Score=28.34 Aligned_cols=87 Identities=14% Similarity=0.191 Sum_probs=52.7
Q ss_pred CCchhHHHHHHHHHHC----CCeEEEEcCCCChH---HHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHHcCCCCC
Q 032106 3 SLYPHAKGILHALKDK----GIDVAVASRSPSPD---IANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFN 75 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~----g~~l~i~S~~~~~~---~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~ 75 (147)
.+.||+.++|+.|.++ .+++..+||+.... -+..+-+.+|+. .+....+- ....|+... + ...+
T Consensus 51 ~~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg~~E~~rA~~lS~~Lgv~--Vs~dqviq----SHsP~r~l~-~--~~~k 121 (389)
T KOG1618|consen 51 RPIPGALKALRRLVDNQGQLKIPFVFLTNGGGILESSRAQELSALLGVE--VSADQVIQ----SHSPFRLLV-E--YHYK 121 (389)
T ss_pred CCCcchHHHHHHHHhcCCCeeccEEEEeCCCCcchhhHHHHHHHhhCCc--cCHHHHHh----hcChHHHHh-h--hhhc
Confidence 5789999999999988 89999999876322 222333445543 22211111 122333333 2 2347
Q ss_pred cEEEEeCCcccHHHHHHcCCeEEE
Q 032106 76 SMLFFDDEDRNIDAVSKMGVTGIL 99 (147)
Q Consensus 76 ~~v~VgDs~~Di~~a~~~Gi~~i~ 99 (147)
+++.+|+. +-.+.|+..|.+-+-
T Consensus 122 ~vLv~G~~-~vr~vAegyGFk~Vv 144 (389)
T KOG1618|consen 122 RVLVVGQG-SVREVAEGYGFKNVV 144 (389)
T ss_pred eEEEecCC-cHHHHhhccCcccee
Confidence 89999954 446668888886543
No 305
>PLN02151 trehalose-phosphatase
Probab=61.60 E-value=14 Score=29.80 Aligned_cols=35 Identities=11% Similarity=0.192 Sum_probs=26.5
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHH
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLE 39 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~ 39 (147)
.+-|++.++|+.|.+ +++++|+|+.. ...+..++.
T Consensus 120 ~~~~~~~~aL~~La~-~~~vaIvSGR~-~~~l~~~~~ 154 (354)
T PLN02151 120 FMSKKMRNTVRKLAK-CFPTAIVSGRC-REKVSSFVK 154 (354)
T ss_pred cCCHHHHHHHHHHhc-CCCEEEEECCC-HHHHHHHcC
Confidence 467899999999984 58999999887 444444443
No 306
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=61.06 E-value=27 Score=22.20 Aligned_cols=37 Identities=19% Similarity=0.328 Sum_probs=27.9
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccc
Q 032106 9 KGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFV 48 (147)
Q Consensus 9 ~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~ 48 (147)
..+++.++++|..+.++. .+ +. ++.+++..|+.++|.
T Consensus 61 ~~~~~~~~~~g~~l~l~~-~~-~~-v~~~l~~~gl~~~~~ 97 (106)
T TIGR02886 61 LGRYKKIKNEGGEVIVCN-VS-PA-VKRLFELSGLFKIIR 97 (106)
T ss_pred HHHHHHHHHcCCEEEEEe-CC-HH-HHHHHHHhCCceEEE
Confidence 356777888999999887 43 33 478899999987764
No 307
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=60.64 E-value=42 Score=21.52 Aligned_cols=38 Identities=29% Similarity=0.508 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcc
Q 032106 6 PHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIK 44 (147)
Q Consensus 6 pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~ 44 (147)
+...++...++..|+.+..+|... ...++..++..++.
T Consensus 46 ~~l~~~~~~~~~~~~~vi~is~d~-~~~~~~~~~~~~~~ 83 (124)
T PF00578_consen 46 PELNELYKKYKDKGVQVIGISTDD-PEEIKQFLEEYGLP 83 (124)
T ss_dssp HHHHHHHHHHHTTTEEEEEEESSS-HHHHHHHHHHHTCS
T ss_pred hHHHHHhhhhccceEEeeeccccc-ccchhhhhhhhccc
Confidence 455666777777788888888655 66667777777754
No 308
>PLN02580 trehalose-phosphatase
Probab=60.23 E-value=16 Score=29.67 Aligned_cols=35 Identities=9% Similarity=0.102 Sum_probs=27.3
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHH
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLE 39 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~ 39 (147)
.+-|++.++|+.|.+. .+++|+|++. ...++.++.
T Consensus 141 ~~s~~~~~aL~~La~~-~~VAIVSGR~-~~~L~~~l~ 175 (384)
T PLN02580 141 LMSDAMRSAVKNVAKY-FPTAIISGRS-RDKVYELVG 175 (384)
T ss_pred cCCHHHHHHHHHHhhC-CCEEEEeCCC-HHHHHHHhC
Confidence 4578999999999988 6899999887 454455544
No 309
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=59.52 E-value=65 Score=25.67 Aligned_cols=90 Identities=16% Similarity=0.210 Sum_probs=50.9
Q ss_pred HHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHHc-------CCCCCcEEEE
Q 032106 8 AKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRT-------GVPFNSMLFF 80 (147)
Q Consensus 8 v~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~-------~~~~~~~v~V 80 (147)
.+.+++.|.+.|+.+.|.+.. ...+..+++.+|++.. ..+..... ........+.+.+ ...|+ +++-
T Consensus 16 Fk~~I~eL~~~GheV~it~R~--~~~~~~LL~~yg~~y~-~iG~~g~~--~~~Kl~~~~~R~~~l~~~~~~~~pD-v~is 89 (335)
T PF04007_consen 16 FKNIIRELEKRGHEVLITARD--KDETEELLDLYGIDYI-VIGKHGDS--LYGKLLESIERQYKLLKLIKKFKPD-VAIS 89 (335)
T ss_pred HHHHHHHHHhCCCEEEEEEec--cchHHHHHHHcCCCeE-EEcCCCCC--HHHHHHHHHHHHHHHHHHHHhhCCC-EEEe
Confidence 456789999999999999944 4556789999998532 21111111 1111111111111 12343 2322
Q ss_pred eCCcccHHHHHHcCCeEEEECCC
Q 032106 81 DDEDRNIDAVSKMGVTGILVGNG 103 (147)
Q Consensus 81 gDs~~Di~~a~~~Gi~~i~v~~~ 103 (147)
.-+..-...|.-+|+.+|.+.+.
T Consensus 90 ~~s~~a~~va~~lgiP~I~f~D~ 112 (335)
T PF04007_consen 90 FGSPEAARVAFGLGIPSIVFNDT 112 (335)
T ss_pred cCcHHHHHHHHHhCCCeEEEecC
Confidence 33344455788889999988764
No 310
>PF10307 DUF2410: Hypothetical protein (DUF2410); InterPro: IPR018812 This entry represents a family of proteins conserved in fungi whose function is not known. There are two characteristic sequence motifs, GGWW and TGR.
Probab=59.42 E-value=69 Score=23.61 Aligned_cols=75 Identities=9% Similarity=0.196 Sum_probs=51.7
Q ss_pred HHHCCCeEEEEcCCCCh---HHHHHHHHhcCcccccccceec-------CCCCCcHHHHHHHHHHcCCCCCcEEEEeCCc
Q 032106 15 LKDKGIDVAVASRSPSP---DIANTFLEKLNIKSMFVAKEIF-------SSWSHKTDHFQRIHSRTGVPFNSMLFFDDED 84 (147)
Q Consensus 15 L~~~g~~l~i~S~~~~~---~~~~~~l~~~gl~~~f~~~~~~-------~~~kp~~~~~~~~~~~~~~~~~~~v~VgDs~ 84 (147)
+++.+...+++|+..+. ..++.++..-+|. |+.+..- +.-+=|...+..+++.|. ..+++-+-+|+.
T Consensus 67 ~~~~dtltVLLTGR~e~~F~~lI~~ml~s~~L~--Fd~v~LKp~~~~~~sTm~fK~~~l~~ll~~Y~-~~~eI~IYeDR~ 143 (197)
T PF10307_consen 67 MQDPDTLTVLLTGRRESKFSSLIERMLASKGLE--FDAVCLKPENQRFSSTMDFKQAFLEDLLHTYK-NAEEIRIYEDRP 143 (197)
T ss_pred hcCCCeeEEEEeCCCchhHHHHHHHHHhcCCCC--ccEEEeCcccccCccccHHHHHHHHHHHHhcC-CCCEEEEEcCCH
Confidence 34557788899977642 3445566667776 7764221 112234567788888888 779999999999
Q ss_pred ccHHHHHH
Q 032106 85 RNIDAVSK 92 (147)
Q Consensus 85 ~Di~~a~~ 92 (147)
..+...+.
T Consensus 144 ~hvk~Fr~ 151 (197)
T PF10307_consen 144 KHVKGFRD 151 (197)
T ss_pred HHHHHHHH
Confidence 99887765
No 311
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=58.93 E-value=76 Score=23.91 Aligned_cols=98 Identities=6% Similarity=0.116 Sum_probs=58.0
Q ss_pred hhHHHHHHHHHHCCC--eEEEEcCCCCh-HHHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHHcC----CCCCcEE
Q 032106 6 PHAKGILHALKDKGI--DVAVASRSPSP-DIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTG----VPFNSML 78 (147)
Q Consensus 6 pgv~~~L~~L~~~g~--~l~i~S~~~~~-~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~----~~~~~~v 78 (147)
+...++|+.+++.|. +.+++=|...+ +.++.++...+.--.+...-.++..+--+..+.++.+--. -..+-.+
T Consensus 103 ~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~vD~VLiMtV~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~I 182 (228)
T PRK08091 103 HDLALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQIDLIQILTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLI 182 (228)
T ss_pred ccHHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhhcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCceE
Confidence 456789999999999 99998865422 2223333333322122221234445566666666554211 1223457
Q ss_pred EEeCCcc--cHHHHHHcCCeEEEECCC
Q 032106 79 FFDDEDR--NIDAVSKMGVTGILVGNG 103 (147)
Q Consensus 79 ~VgDs~~--Di~~a~~~Gi~~i~v~~~ 103 (147)
.|+=+.+ .+..+.++|...+-++..
T Consensus 183 eVDGGI~~~ti~~l~~aGaD~~V~GSa 209 (228)
T PRK08091 183 SIDGSMTLELASYLKQHQIDWVVSGSA 209 (228)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEEChh
Confidence 7777766 577788899998877654
No 312
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=58.38 E-value=48 Score=25.28 Aligned_cols=91 Identities=12% Similarity=0.107 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHHCCCeEEEEcCCCChH--HHHHHHHhcCcccccccc---eecCCCCCcHHHHHHHHHHcCC-CCCc-EE
Q 032106 6 PHAKGILHALKDKGIDVAVASRSPSPD--IANTFLEKLNIKSMFVAK---EIFSSWSHKTDHFQRIHSRTGV-PFNS-ML 78 (147)
Q Consensus 6 pgv~~~L~~L~~~g~~l~i~S~~~~~~--~~~~~l~~~gl~~~f~~~---~~~~~~kp~~~~~~~~~~~~~~-~~~~-~v 78 (147)
|--..+|..+++ +..+|.+.+.+.. .....|...|+. +.... -..+.+..|......+++.+.. .+.+ ++
T Consensus 137 pre~aaLa~~rE--yseti~~rs~d~~~~~~~~~L~e~glt-~v~garf~~v~~as~gKg~Aa~~ll~~y~rl~~~r~t~ 213 (274)
T COG3769 137 PREQAALAMLRE--YSETIIWRSSDERMAQFTARLNERGLT-FVHGARFWHVLDASAGKGQAANWLLETYRRLGGARTTL 213 (274)
T ss_pred ChHHhHHHHHHH--hhhheeecccchHHHHHHHHHHhcCce-EEeccceEEEeccccCccHHHHHHHHHHHhcCceeEEE
Confidence 444556666665 4455555333221 123455556653 11111 1223333455555555655432 3344 89
Q ss_pred EEeCCcccHHHHHHcCCeEEEE
Q 032106 79 FFDDEDRNIDAVSKMGVTGILV 100 (147)
Q Consensus 79 ~VgDs~~Di~~a~~~Gi~~i~v 100 (147)
-+||+.+|....... ..++.|
T Consensus 214 ~~GDg~nD~Pl~ev~-d~AfiV 234 (274)
T COG3769 214 GLGDGPNDAPLLEVM-DYAFIV 234 (274)
T ss_pred ecCCCCCcccHHHhh-hhheee
Confidence 999999998866553 333433
No 313
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=58.00 E-value=63 Score=26.17 Aligned_cols=79 Identities=13% Similarity=0.149 Sum_probs=51.2
Q ss_pred chhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccc------eecCCCCCcHHHHHHHHHHcCCCCCcEE
Q 032106 5 YPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAK------EIFSSWSHKTDHFQRIHSRTGVPFNSML 78 (147)
Q Consensus 5 ~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~------~~~~~~kp~~~~~~~~~~~~~~~~~~~v 78 (147)
+....+.+..|++.|+.+.|||++. +-.-+..+|+...-..+ ..++ .--=-..|..++..+|....+++
T Consensus 30 l~~l~~~ia~L~~~G~eVilVSSGA----iaaG~~~Lg~~~rp~~l~~kQA~AAVG-Q~~Lm~~y~~~f~~~g~~v~QiL 104 (369)
T COG0263 30 LEELVRQVAALHKAGHEVVLVSSGA----IAAGRTRLGLPKRPKTLAEKQAAAAVG-QVRLMQLYEELFARYGIKVGQIL 104 (369)
T ss_pred HHHHHHHHHHHHhCCCEEEEEccch----hhhChhhcCCCCCCcchHHHHHHHHhC-HHHHHHHHHHHHHhcCCeeeEEE
Confidence 3456778899999999999999665 23456777776432211 0000 00123467778888888888888
Q ss_pred EEeCCcccHH
Q 032106 79 FFDDEDRNID 88 (147)
Q Consensus 79 ~VgDs~~Di~ 88 (147)
.--|...|-.
T Consensus 105 LTr~D~~~r~ 114 (369)
T COG0263 105 LTRDDFSDRR 114 (369)
T ss_pred eehhhhhhHH
Confidence 8777766543
No 314
>cd00636 TroA-like Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site is formed in the interface between two globular domains linked by a single helix. Many of these proteins also possess a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence). The TroA-like proteins differ in their fold and ligand-binding mechanism from the PBPI and PBPII proteins, but are structurally similar, however, to the beta-subunit of the nitrogenase molybdenum-iron protein MoFe. Most TroA-like proteins are encoded by ABC-type operons and appear to function as periplasmic components of ABC transporters in metal ion uptake.
Probab=57.27 E-value=49 Score=21.26 Aligned_cols=60 Identities=12% Similarity=0.350 Sum_probs=39.0
Q ss_pred CcEEEEeCCccc--HHHHHHcCCeEEEECCCC--ChHHHHHHHHHHHHhhccchhhHHHHHHhhc
Q 032106 75 NSMLFFDDEDRN--IDAVSKMGVTGILVGNGV--NLGALRQGLTKFSQNWNTSQKNKQKWISKFS 135 (147)
Q Consensus 75 ~~~v~VgDs~~D--i~~a~~~Gi~~i~v~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 135 (147)
-+++++.++..+ .+...++|+..+.+.... ....+...+....+.+. ..+....+.+.+.
T Consensus 62 pDlvi~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~i~~lg~~~~-~~~~a~~~~~~~~ 125 (148)
T cd00636 62 PDLIIANGSGLEAWLDKLSKIAIPVVVVDEASELSLENIKESIRLIGKALG-KEENAEELIAELD 125 (148)
T ss_pred CCEEEEecccchhHHHHHHHhCCCEEEECCCCcCCHHHHHHHHHHHHHHHC-ChHHHHHHHHHHH
Confidence 346777766554 677788898888887653 56666666666666665 4555555555444
No 315
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=55.97 E-value=21 Score=31.34 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=30.8
Q ss_pred CchhHHHHHHHHHH-CCCeEEEEcCCCChHHHHHHHHhcCc
Q 032106 4 LYPHAKGILHALKD-KGIDVAVASRSPSPDIANTFLEKLNI 43 (147)
Q Consensus 4 ~~pgv~~~L~~L~~-~g~~l~i~S~~~~~~~~~~~l~~~gl 43 (147)
+-+.+.++|+.|.+ .|+.++|+|+.. ...++..+..+++
T Consensus 515 ~~~~~~~~L~~L~~d~g~~V~ivSGR~-~~~l~~~~~~~~l 554 (726)
T PRK14501 515 PDKELRDLLRRLAADPNTDVAIISGRD-RDTLERWFGDLPI 554 (726)
T ss_pred CCHHHHHHHHHHHcCCCCeEEEEeCCC-HHHHHHHhCCCCe
Confidence 45799999999999 499999999877 5666666665554
No 316
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=55.95 E-value=24 Score=23.25 Aligned_cols=25 Identities=16% Similarity=0.122 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHHCCCeEEEEcCCCC
Q 032106 6 PHAKGILHALKDKGIDVAVASRSPS 30 (147)
Q Consensus 6 pgv~~~L~~L~~~g~~l~i~S~~~~ 30 (147)
+++.++++.++++|.++..+|+...
T Consensus 61 ~~~~~~~~~a~~~g~~vi~iT~~~~ 85 (120)
T cd05710 61 KETVAAAKFAKEKGATVIGLTDDED 85 (120)
T ss_pred hHHHHHHHHHHHcCCeEEEEECCCC
Confidence 5788899999999999999997653
No 317
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=55.52 E-value=58 Score=21.49 Aligned_cols=67 Identities=10% Similarity=0.071 Sum_probs=31.8
Q ss_pred HHHHHHHHHCCCeEEEEcCCCCh-------HHHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHHcCCCCCcEE
Q 032106 9 KGILHALKDKGIDVAVASRSPSP-------DIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSML 78 (147)
Q Consensus 9 ~~~L~~L~~~g~~l~i~S~~~~~-------~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v 78 (147)
.+-|+.|++.|++..|+-..+.. ...+...+.+||. |+.. .+....+..+.+....+.+.-.+..++
T Consensus 17 ~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~-y~~i--Pv~~~~~~~~~v~~f~~~l~~~~~Pvl 90 (110)
T PF04273_consen 17 PEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQ-YVHI--PVDGGAITEEDVEAFADALESLPKPVL 90 (110)
T ss_dssp HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-E-EEE------TTT--HHHHHHHHHHHHTTTTSEE
T ss_pred HHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCe-EEEe--ecCCCCCCHHHHHHHHHHHHhCCCCEE
Confidence 35677888899998888743311 1234577888885 3332 222234556665555554443344444
No 318
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=55.47 E-value=26 Score=21.53 Aligned_cols=38 Identities=16% Similarity=0.287 Sum_probs=26.4
Q ss_pred HHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccc
Q 032106 8 AKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFV 48 (147)
Q Consensus 8 v~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~ 48 (147)
...+.+.++.+|..+.++. .+ +. +..+++.+|+.++|.
T Consensus 59 L~~l~~~~~~~g~~v~i~~-~~-~~-~~~~l~~~gl~~~~~ 96 (99)
T cd07043 59 LLGAYKRARAAGGRLVLVN-VS-PA-VRRVLELTGLDRLFP 96 (99)
T ss_pred HHHHHHHHHHcCCeEEEEc-CC-HH-HHHHHHHhCcceeee
Confidence 3456677778888877766 43 33 478899999887665
No 319
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=55.35 E-value=30 Score=21.38 Aligned_cols=46 Identities=11% Similarity=0.083 Sum_probs=38.8
Q ss_pred cCCCCCcHHHHHHHHHHcCCCCCcEEEEeCCcccHHHHHHcCCeEE
Q 032106 53 FSSWSHKTDHFQRIHSRTGVPFNSMLFFDDEDRNIDAVSKMGVTGI 98 (147)
Q Consensus 53 ~~~~kp~~~~~~~~~~~~~~~~~~~v~VgDs~~Di~~a~~~Gi~~i 98 (147)
++..-|-...++.+++++++++.....|-+.-.+|..++.+|--+.
T Consensus 22 VpE~aPftAvlkfaAEeFkv~~~TsAiiTndGvGINP~qtAGnvfl 67 (82)
T cd01766 22 VPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFL 67 (82)
T ss_pred ccccCchHHHHHHHHHhcCCCccceeEEecCccccChhhcccceee
Confidence 3445688999999999999999999999888889999998886544
No 320
>PLN02423 phosphomannomutase
Probab=55.19 E-value=29 Score=26.04 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=22.2
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCC
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSP 29 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~ 29 (147)
++-|.+.++|++|+++ ++++++|++.
T Consensus 24 ~i~~~~~~ai~~l~~~-i~fviaTGR~ 49 (245)
T PLN02423 24 EATPEMLEFMKELRKV-VTVGVVGGSD 49 (245)
T ss_pred cCCHHHHHHHHHHHhC-CEEEEECCcC
Confidence 3557889999999987 9999999775
No 321
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=54.66 E-value=1.2e+02 Score=24.85 Aligned_cols=106 Identities=14% Similarity=0.250 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHCCCeEEE-EcCCCCh-HHHHHHHHhcCccccccc---ceecCCCCCcHHHHHHHHHHcCCCCCcEEEEe
Q 032106 7 HAKGILHALKDKGIDVAV-ASRSPSP-DIANTFLEKLNIKSMFVA---KEIFSSWSHKTDHFQRIHSRTGVPFNSMLFFD 81 (147)
Q Consensus 7 gv~~~L~~L~~~g~~l~i-~S~~~~~-~~~~~~l~~~gl~~~f~~---~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~Vg 81 (147)
.+..+++..++.|.++.+ +.|...+ +.++.+ ..++ +++.. ++. +...|...-+..+ ++++ .+--+.|+
T Consensus 264 ti~~ai~~akk~GikvgVD~lnp~tp~e~i~~l--~~~v-D~Vllht~vdp-~~~~~~~~kI~~i-kk~~--~~~~I~Vd 336 (391)
T PRK13307 264 TIEKAIHEAQKTGIYSILDMLNVEDPVKLLESL--KVKP-DVVELHRGIDE-EGTEHAWGNIKEI-KKAG--GKILVAVA 336 (391)
T ss_pred HHHHHHHHHHHcCCEEEEEEcCCCCHHHHHHHh--hCCC-CEEEEccccCC-CcccchHHHHHHH-HHhC--CCCcEEEE
Confidence 467789999999999999 7764322 222222 2222 22111 111 1222333333333 3332 23234443
Q ss_pred CC--cccHHHHHHcCCeEEEECCCC-ChHHHHHHHHHHHHh
Q 032106 82 DE--DRNIDAVSKMGVTGILVGNGV-NLGALRQGLTKFSQN 119 (147)
Q Consensus 82 Ds--~~Di~~a~~~Gi~~i~v~~~~-~~~~~~~~l~~~~~~ 119 (147)
=+ ..++..+.++|...+.+++.. ..+.....++++.+.
T Consensus 337 GGI~~eti~~l~~aGADivVVGsaIf~a~Dp~~aak~l~~~ 377 (391)
T PRK13307 337 GGVRVENVEEALKAGADILVVGRAITKSKDVRRAAEDFLNK 377 (391)
T ss_pred CCcCHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHh
Confidence 33 347888899999988888763 233455556666544
No 322
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=54.47 E-value=24 Score=24.86 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=22.3
Q ss_pred chhHHHHHHHHHHCCCeEEEEcCCCC
Q 032106 5 YPHAKGILHALKDKGIDVAVASRSPS 30 (147)
Q Consensus 5 ~pgv~~~L~~L~~~g~~l~i~S~~~~ 30 (147)
-+++.++++.++++|.++..+|+...
T Consensus 85 t~~~i~~~~~ak~~g~~ii~IT~~~~ 110 (179)
T TIGR03127 85 TESLVTVAKKAKEIGATVAAITTNPE 110 (179)
T ss_pred cHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 46788999999999999999997664
No 323
>PF10113 Fibrillarin_2: Fibrillarin-like archaeal protein; InterPro: IPR016760 Members of this protein family are HmdC, whose gene regularly occurs in the context of genes for HmdA (5,10-methenyltetrahydromethanopterin hydrogenase) and the radical SAM protein HmdB involved in biosynthesis of the HmdA cofactor. Bioinformatics suggests this protein, a homologue of eukaryotic fibrillarin, may be involved in biosynthesis of the guanylyl pyridinol cofactor in HmdA.
Probab=54.19 E-value=33 Score=28.41 Aligned_cols=58 Identities=19% Similarity=0.354 Sum_probs=38.2
Q ss_pred HHHHHHHHHcCCCCCcEEEEeCCcccH----HHHHHcCCeEEEECCC-CChHHHHHHHHHHHHhh
Q 032106 61 DHFQRIHSRTGVPFNSMLFFDDEDRNI----DAVSKMGVTGILVGNG-VNLGALRQGLTKFSQNW 120 (147)
Q Consensus 61 ~~~~~~~~~~~~~~~~~v~VgDs~~Di----~~a~~~Gi~~i~v~~~-~~~~~~~~~l~~~~~~~ 120 (147)
.-...+.+++|---+-+++|||+..|+ .++..+|+..+.+.-| ++. ....+..|.+..
T Consensus 209 ~~Va~~Akk~gkGveaI~~vGDGyddLI~G~~a~id~~vDvfVvEGgPFN~--a~dRl~aFakaV 271 (505)
T PF10113_consen 209 EEVAELAKKYGKGVEAIMHVGDGYDDLITGLKACIDMGVDVFVVEGGPFNR--AKDRLKAFAKAV 271 (505)
T ss_pred HHHHHHHHHhCCCceEEEEecCChHHHHHHHHHHHhcCCcEEEEeCCCccc--chhHHHHHHHHH
Confidence 345667788998889999999998875 5566678887766433 332 223344555443
No 324
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=53.88 E-value=76 Score=22.42 Aligned_cols=29 Identities=17% Similarity=0.324 Sum_probs=18.5
Q ss_pred HHHHHHHHHHCCCeEEEEcCCCChHHHHHHH
Q 032106 8 AKGILHALKDKGIDVAVASRSPSPDIANTFL 38 (147)
Q Consensus 8 v~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l 38 (147)
+.++++.+.+++.+++++-++ ++.+..+.
T Consensus 35 ~~~ll~~~~~~~~~v~llG~~--~~~~~~~~ 63 (171)
T cd06533 35 MPALLELAAQKGLRVFLLGAK--PEVLEKAA 63 (171)
T ss_pred HHHHHHHHHHcCCeEEEECCC--HHHHHHHH
Confidence 346677777778888888633 44445543
No 325
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=53.83 E-value=47 Score=27.32 Aligned_cols=82 Identities=17% Similarity=0.230 Sum_probs=49.2
Q ss_pred HHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCccc-ccccceecCCCCCcHHHHHHHHHHcCCCCCcEEEEeCCcc-
Q 032106 8 AKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKS-MFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLFFDDEDR- 85 (147)
Q Consensus 8 v~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~-~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgDs~~- 85 (147)
.++.++.|++.|-.+.|||.+. .-. -..+...+-.+ +|. .-+.+..++++|.+ ++=.||++.
T Consensus 164 ~~~~~~~~~~~~R~~giVSRGG-s~~-~~WM~~~~~ENPlye----------~fD~lLeI~~~yDV----tlSLGDglRP 227 (423)
T TIGR00190 164 LLEYVERLKRSGRITGIVSRGG-AIL-AAWMLHHHKENPLYK----------NFDYILEIAKEYDV----TLSLGDGLRP 227 (423)
T ss_pred hHHHHHHHHhCCCccCeecCcH-HHH-HHHHHHcCCcCchHH----------HHHHHHHHHHHhCe----eeeccCCcCC
Confidence 4677888888888888888665 232 23333333222 211 23344566677776 677788764
Q ss_pred -------c-------------HHHHHHcCCeEEEECCCCC
Q 032106 86 -------N-------------IDAVSKMGVTGILVGNGVN 105 (147)
Q Consensus 86 -------D-------------i~~a~~~Gi~~i~v~~~~~ 105 (147)
| .+-|+++|++++-=+.|+-
T Consensus 228 G~i~DA~D~aQi~El~~lgeL~~rA~e~gVQvMVEGPGHv 267 (423)
T TIGR00190 228 GCIADATDRAQISELITLGELVERAREADVQCMVEGPGHV 267 (423)
T ss_pred CccccCCcHHHHHHHHHHHHHHHHHHHcCCeEEEECCCCC
Confidence 1 2457788999776666653
No 326
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=53.10 E-value=17 Score=24.16 Aligned_cols=30 Identities=23% Similarity=0.298 Sum_probs=23.1
Q ss_pred CCCC---chhHHHHHHHHHHCCC-eEEEEcCCCC
Q 032106 1 MPSL---YPHAKGILHALKDKGI-DVAVASRSPS 30 (147)
Q Consensus 1 ~p~~---~pgv~~~L~~L~~~g~-~l~i~S~~~~ 30 (147)
+|.+ +|.+.++++.+++.+. ++.++||+..
T Consensus 62 EPll~~~~~~l~~i~~~~k~~~~~~~~~~tng~~ 95 (139)
T PF13353_consen 62 EPLLHENYDELLEILKYIKEKFPKKIIILTNGYT 95 (139)
T ss_dssp TGGGHHSHHHHHHHHHHHHHTT-SEEEEEETT--
T ss_pred CeeeeccHhHHHHHHHHHHHhCCCCeEEEECCCc
Confidence 3666 7899999999999988 7899998764
No 327
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=53.04 E-value=13 Score=25.88 Aligned_cols=42 Identities=31% Similarity=0.375 Sum_probs=30.4
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCccccc
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMF 47 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f 47 (147)
|-..|-+.-+...|++.|+.+.|+.|. . +..+++-.+-..|+
T Consensus 10 Pvq~p~alYl~~~Lk~~G~~v~Va~np---A-A~kLl~vaDPe~~Y 51 (139)
T PF09001_consen 10 PVQTPSALYLSYKLKKKGFEVVVAGNP---A-ALKLLEVADPEKHY 51 (139)
T ss_dssp TTHHHHHHHHHHHHHCTTEEEEEEE-H---H-HHHHHHHHSTT-SS
T ss_pred cchhHHHHHHHHHHHhcCCeEEEecCH---H-HHhHhhhcCCccch
Confidence 455677778889999999999999843 2 46778877665543
No 328
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=52.42 E-value=18 Score=25.24 Aligned_cols=43 Identities=12% Similarity=0.305 Sum_probs=31.3
Q ss_pred chhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccc
Q 032106 5 YPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFV 48 (147)
Q Consensus 5 ~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~ 48 (147)
+.++.++=+.|++.|+.+.++.+.. ...+..+++.+++...|-
T Consensus 52 ~~sL~~L~~~L~~~g~~L~v~~g~~-~~~l~~l~~~~~~~~V~~ 94 (165)
T PF00875_consen 52 LESLADLQESLRKLGIPLLVLRGDP-EEVLPELAKEYGATAVYF 94 (165)
T ss_dssp HHHHHHHHHHHHHTTS-EEEEESSH-HHHHHHHHHHHTESEEEE
T ss_pred HHHHHHHHHHHHhcCcceEEEecch-HHHHHHHHHhcCcCeeEe
Confidence 3455666678888999999999665 677777888888776543
No 329
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=51.93 E-value=87 Score=22.48 Aligned_cols=73 Identities=8% Similarity=0.094 Sum_probs=36.4
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccceecCC-CCCcHHHHHHHHHHcCCCCCcEEEEeCCcc
Q 032106 9 KGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFSS-WSHKTDHFQRIHSRTGVPFNSMLFFDDEDR 85 (147)
Q Consensus 9 ~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~~~~~-~kp~~~~~~~~~~~~~~~~~~~v~VgDs~~ 85 (147)
.++++...++|.+++++-+. +.+++...+.+.-. |......+. ..-+++--..+++...-...++++||=+..
T Consensus 38 ~~l~~~~~~~~~~vfllG~~--~~v~~~~~~~l~~~--yP~l~i~g~~g~f~~~~~~~i~~~I~~s~~dil~VglG~P 111 (177)
T TIGR00696 38 EELCQRAGKEKLPIFLYGGK--PDVLQQLKVKLIKE--YPKLKIVGAFGPLEPEERKAALAKIARSGAGIVFVGLGCP 111 (177)
T ss_pred HHHHHHHHHcCCeEEEECCC--HHHHHHHHHHHHHH--CCCCEEEEECCCCChHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 46667777788899999744 55555555544211 121111110 001122223344444445566777776644
No 330
>PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families. In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A ....
Probab=51.89 E-value=41 Score=24.70 Aligned_cols=41 Identities=24% Similarity=0.344 Sum_probs=31.8
Q ss_pred chhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCccccc
Q 032106 5 YPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMF 47 (147)
Q Consensus 5 ~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f 47 (147)
+..+.+.|..|.+.|.++.|++++ ...++.+++.+++...+
T Consensus 19 ~~~~~~~i~~l~~~g~~vvvV~g~--g~~~~~~~~~~~~~~~~ 59 (242)
T PF00696_consen 19 LRELADDIALLSQLGIKVVVVHGG--GSFTDELLEKYGIEPKF 59 (242)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEESS--HHHHHHHHHHCTHTTSE
T ss_pred HHHHHHHHHHHHhCCCeEEEEECC--hhhcCchHHhccCCccc
Confidence 456677777788899999999965 46678999998876544
No 331
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=51.87 E-value=39 Score=21.97 Aligned_cols=26 Identities=15% Similarity=0.226 Sum_probs=21.8
Q ss_pred chhHHHHHHHHHHCCCeEEEEcCCCC
Q 032106 5 YPHAKGILHALKDKGIDVAVASRSPS 30 (147)
Q Consensus 5 ~pgv~~~L~~L~~~g~~l~i~S~~~~ 30 (147)
-.+..+.++.++++|.++..+|+...
T Consensus 66 ~~~~~~~~~~ak~~g~~vi~iT~~~~ 91 (131)
T PF01380_consen 66 TRELIELLRFAKERGAPVILITSNSE 91 (131)
T ss_dssp THHHHHHHHHHHHTTSEEEEEESSTT
T ss_pred chhhhhhhHHHHhcCCeEEEEeCCCC
Confidence 45778899999999999999996653
No 332
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=51.78 E-value=53 Score=27.12 Aligned_cols=82 Identities=21% Similarity=0.290 Sum_probs=48.9
Q ss_pred HHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCccc-ccccceecCCCCCcHHHHHHHHHHcCCCCCcEEEEeCCcc-
Q 032106 8 AKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKS-MFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLFFDDEDR- 85 (147)
Q Consensus 8 v~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~-~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgDs~~- 85 (147)
..++|+.|++.+-.+.|||.+. .-. -..+...+-.+ +|. .-+.+..++++|.+ ++=.||++.
T Consensus 167 ~~~~~~~~~~~~R~~giVSRGG-s~~-~~WM~~n~~ENPlye----------~fD~lLeI~~~yDV----tlSLGDglRP 230 (431)
T PRK13352 167 TRETLERLKKSGRIMGIVSRGG-SFL-AAWMLHNNKENPLYE----------HFDYLLEILKEYDV----TLSLGDGLRP 230 (431)
T ss_pred hHHHHHHHHhcCCccCeecCCH-HHH-HHHHHHcCCcCchHH----------HHHHHHHHHHHhCe----eeeccCCcCC
Confidence 4677888888888888888665 233 23333333222 211 23344566677776 677777754
Q ss_pred -------c-------------HHHHHHcCCeEEEECCCCC
Q 032106 86 -------N-------------IDAVSKMGVTGILVGNGVN 105 (147)
Q Consensus 86 -------D-------------i~~a~~~Gi~~i~v~~~~~ 105 (147)
| .+-|++.|+++.-=+.|+-
T Consensus 231 G~i~Da~D~aQi~El~~lgeL~~RA~e~gVQvMVEGPGHv 270 (431)
T PRK13352 231 GCIADATDRAQIQELITLGELVKRAREAGVQVMVEGPGHV 270 (431)
T ss_pred CccccCCcHHHHHHHHHHHHHHHHHHHcCCeEEEECCCCC
Confidence 1 2346778998766666543
No 333
>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]
Probab=51.49 E-value=48 Score=26.47 Aligned_cols=95 Identities=15% Similarity=0.176 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHHcCCC------CCcEEEE
Q 032106 7 HAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVP------FNSMLFF 80 (147)
Q Consensus 7 gv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~------~~~~v~V 80 (147)
|-..++..|+++ -+-++.||+--+.++-...+.+++. +..-..+...+....-|+...+..|+. |---+|+
T Consensus 275 gp~~li~llrqr-~RpylFSnslppavV~~a~ka~dll--m~s~~~i~~~~a~~qrfr~~me~aGftIsg~~hPI~pv~l 351 (417)
T KOG1359|consen 275 GPKPLISLLRQR-SRPYLFSNSLPPAVVGMAAKAYDLL--MVSSKEIQSRQANTQRFREFMEAAGFTISGASHPICPVML 351 (417)
T ss_pred CChhHHHHHHhc-CCceeecCCCChhhhhhhHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhcCceecCCCCCccceec
Confidence 344566777776 4457788776344443444444332 222233444556777788887777764 3447999
Q ss_pred eCCcccHHHHHH---cCCeEEEECCCC
Q 032106 81 DDEDRNIDAVSK---MGVTGILVGNGV 104 (147)
Q Consensus 81 gDs~~Di~~a~~---~Gi~~i~v~~~~ 104 (147)
||..--..+|.. .|+-++++..+.
T Consensus 352 Gda~lA~~~ad~lLk~Gi~Vigfs~Pv 378 (417)
T KOG1359|consen 352 GDARLASKMADELLKRGIYVIGFSYPV 378 (417)
T ss_pred ccHHHHHHHHHHHHhcCceEEeecCCc
Confidence 999888777766 499999887654
No 334
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=51.35 E-value=31 Score=26.17 Aligned_cols=28 Identities=18% Similarity=0.450 Sum_probs=24.5
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCC
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVASRSP 29 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S~~~ 29 (147)
++-||+..++++.|++.|+++.+..+..
T Consensus 62 ~~~Fpdp~~~i~~l~~~g~~~~~~~~P~ 89 (265)
T cd06589 62 AGKFPNPKSMIDELHDNGVKLVLWIDPY 89 (265)
T ss_pred hhhCCCHHHHHHHHHHCCCEEEEEeChh
Confidence 4578999999999999999999988554
No 335
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=51.33 E-value=42 Score=21.15 Aligned_cols=38 Identities=13% Similarity=0.242 Sum_probs=27.4
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCccccccc
Q 032106 9 KGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVA 49 (147)
Q Consensus 9 ~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~ 49 (147)
..+.+.++++|..+.++. .+ +. ...+++..|+...|..
T Consensus 65 ~~~~~~~~~~~~~~~l~~-~~-~~-~~~~l~~~~l~~~~~i 102 (108)
T TIGR00377 65 LGRYKQVRRVGGQLVLVS-VS-PR-VARLLDITGLLRIIPI 102 (108)
T ss_pred HHHHHHHHhcCCEEEEEe-CC-HH-HHHHHHHhChhheecc
Confidence 455667788888888877 33 34 4688999999887664
No 336
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=51.29 E-value=40 Score=26.34 Aligned_cols=44 Identities=18% Similarity=0.132 Sum_probs=29.7
Q ss_pred CCCCchhHHHHHHHHHHC--CCeEEEEcCCCChHHHHHHHHhcCcc
Q 032106 1 MPSLYPHAKGILHALKDK--GIDVAVASRSPSPDIANTFLEKLNIK 44 (147)
Q Consensus 1 ~p~~~pgv~~~L~~L~~~--g~~l~i~S~~~~~~~~~~~l~~~gl~ 44 (147)
+|.+.+++.++++.+++. ...+.+.||+......-..+...|+.
T Consensus 75 EPll~~~l~~li~~i~~~~~~~~i~itTNG~ll~~~~~~L~~agl~ 120 (331)
T PRK00164 75 EPLLRKDLEDIIAALAALPGIRDLALTTNGYLLARRAAALKDAGLD 120 (331)
T ss_pred CCcCccCHHHHHHHHHhcCCCceEEEEcCchhHHHHHHHHHHcCCC
Confidence 488889999999999886 36889999875211111234445664
No 337
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=51.20 E-value=1.1e+02 Score=23.30 Aligned_cols=72 Identities=11% Similarity=0.129 Sum_probs=38.9
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccceecC--CCCCcHHHHHHHHHHcCCCCCcEEEEeCCcc
Q 032106 9 KGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFS--SWSHKTDHFQRIHSRTGVPFNSMLFFDDEDR 85 (147)
Q Consensus 9 ~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~~~~--~~kp~~~~~~~~~~~~~~~~~~~v~VgDs~~ 85 (147)
.++++.....|++++++- +. +.+++...+.+.-. | ...+++ .+.-+++-...+++...-...++++||=+..
T Consensus 95 ~~ll~~~~~~~~~v~llG-~~-~~v~~~a~~~l~~~-y--~l~i~g~~~Gyf~~~e~~~i~~~I~~s~~dil~VglG~P 168 (243)
T PRK03692 95 EALMARAGKEGTPVFLVG-GK-PEVLAQTEAKLRTQ-W--NVNIVGSQDGYFTPEQRQALFERIHASGAKIVTVAMGSP 168 (243)
T ss_pred HHHHHHHHhcCCeEEEEC-CC-HHHHHHHHHHHHHH-h--CCEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 455666667789999997 44 55555544443221 1 111111 1111233345566666666678888887643
No 338
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=51.13 E-value=1.1e+02 Score=25.64 Aligned_cols=51 Identities=12% Similarity=0.221 Sum_probs=33.2
Q ss_pred eecCCCCCcHHHHHHHHHHc-CCCCCcEEEEeCCcccHH---HHHH----cCCeEEEEC
Q 032106 51 EIFSSWSHKTDHFQRIHSRT-GVPFNSMLFFDDEDRNID---AVSK----MGVTGILVG 101 (147)
Q Consensus 51 ~~~~~~kp~~~~~~~~~~~~-~~~~~~~v~VgDs~~Di~---~a~~----~Gi~~i~v~ 101 (147)
+..+.-.-+.+++.++.+-. -+.|++++||=|+..+=. .|+. .|+..+-++
T Consensus 189 DTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~itGvIlT 247 (451)
T COG0541 189 DTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGITGVILT 247 (451)
T ss_pred eCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCCceEEEE
Confidence 44455556777777776644 368999999999988533 3333 466655554
No 339
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=50.11 E-value=60 Score=20.09 Aligned_cols=99 Identities=17% Similarity=0.290 Sum_probs=54.1
Q ss_pred hHHHHH-HHHHHCCC-eEEEEcCCCChHHHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHHcCCCCCcEEEEeCCc
Q 032106 7 HAKGIL-HALKDKGI-DVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLFFDDED 84 (147)
Q Consensus 7 gv~~~L-~~L~~~g~-~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgDs~ 84 (147)
...+.+ +.|+..|+ .+..+++. ... ...++....+-.+- +.--......+.++.+ +..+ ..-.++++++..
T Consensus 9 ~~~~~l~~~l~~~~~~~v~~~~~~--~~~-~~~~~~~~~d~iii--d~~~~~~~~~~~~~~i-~~~~-~~~~ii~~t~~~ 81 (112)
T PF00072_consen 9 EIRELLEKLLERAGYEEVTTASSG--EEA-LELLKKHPPDLIII--DLELPDGDGLELLEQI-RQIN-PSIPIIVVTDED 81 (112)
T ss_dssp HHHHHHHHHHHHTTEEEEEEESSH--HHH-HHHHHHSTESEEEE--ESSSSSSBHHHHHHHH-HHHT-TTSEEEEEESST
T ss_pred HHHHHHHHHHHhCCCCEEEEECCH--HHH-HHHhcccCceEEEE--Eeeecccccccccccc-cccc-ccccEEEecCCC
Confidence 344445 44557888 77766643 233 35555555322221 1111112334444555 4444 446688888665
Q ss_pred c--cHHHHHHcCCeEEEECCCCChHHHHHHH
Q 032106 85 R--NIDAVSKMGVTGILVGNGVNLGALRQGL 113 (147)
Q Consensus 85 ~--Di~~a~~~Gi~~i~v~~~~~~~~~~~~l 113 (147)
. .+..+.++|+..+.. .+...+++...+
T Consensus 82 ~~~~~~~~~~~g~~~~l~-kp~~~~~l~~~i 111 (112)
T PF00072_consen 82 DSDEVQEALRAGADDYLS-KPFSPEELRAAI 111 (112)
T ss_dssp SHHHHHHHHHTTESEEEE-SSSSHHHHHHHH
T ss_pred CHHHHHHHHHCCCCEEEE-CCCCHHHHHHhh
Confidence 5 678888889876655 556666666554
No 340
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=50.03 E-value=35 Score=22.26 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHHCCCeEEEEcCCC
Q 032106 6 PHAKGILHALKDKGIDVAVASRSP 29 (147)
Q Consensus 6 pgv~~~L~~L~~~g~~l~i~S~~~ 29 (147)
+.+.++++.++++|.++.++|+..
T Consensus 74 ~~~~~~~~~a~~~g~~iv~iT~~~ 97 (139)
T cd05013 74 KETVEAAEIAKERGAKVIAITDSA 97 (139)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCC
Confidence 467788899999999999999665
No 341
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=49.28 E-value=67 Score=20.41 Aligned_cols=68 Identities=13% Similarity=0.111 Sum_probs=41.3
Q ss_pred HHHHHHHHCCCeEEEEcC-------CCChHHHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHHcCCCCCcEEEEeC
Q 032106 10 GILHALKDKGIDVAVASR-------SPSPDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLFFDD 82 (147)
Q Consensus 10 ~~L~~L~~~g~~l~i~S~-------~~~~~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgD 82 (147)
+.++.+-+. .++.|.|- ++.-..++.+|..+|+. |..++.. .++.....+.+..|..---.||||+
T Consensus 3 ~~v~~~i~~-~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~--~~~~di~----~~~~~~~~l~~~tg~~tvP~vfi~g 75 (97)
T TIGR00365 3 ERIKEQIKE-NPVVLYMKGTPQFPQCGFSARAVQILKACGVP--FAYVNVL----EDPEIRQGIKEYSNWPTIPQLYVKG 75 (97)
T ss_pred HHHHHHhcc-CCEEEEEccCCCCCCCchHHHHHHHHHHcCCC--EEEEECC----CCHHHHHHHHHHhCCCCCCEEEECC
Confidence 456666555 56777753 33234567889999986 4443332 1356666655556655455789998
Q ss_pred Cc
Q 032106 83 ED 84 (147)
Q Consensus 83 s~ 84 (147)
..
T Consensus 76 ~~ 77 (97)
T TIGR00365 76 EF 77 (97)
T ss_pred EE
Confidence 74
No 342
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=48.75 E-value=22 Score=27.56 Aligned_cols=26 Identities=27% Similarity=0.645 Sum_probs=23.3
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEcC
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVASR 27 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S~ 27 (147)
|+-||+..++++.|++.|+++.+...
T Consensus 70 ~~~FPdp~~mi~~Lh~~G~k~v~~v~ 95 (292)
T cd06595 70 RKLFPDPEKLLQDLHDRGLKVTLNLH 95 (292)
T ss_pred hhcCCCHHHHHHHHHHCCCEEEEEeC
Confidence 67899999999999999999998763
No 343
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=47.87 E-value=1.4e+02 Score=24.82 Aligned_cols=66 Identities=21% Similarity=0.315 Sum_probs=44.2
Q ss_pred EEEcCCCChHHHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHHcCCCCCcEEEEeCCcc--cHHHHHHcCCeEEEE
Q 032106 23 AVASRSPSPDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLFFDDEDR--NIDAVSKMGVTGILV 100 (147)
Q Consensus 23 ~i~S~~~~~~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgDs~~--Di~~a~~~Gi~~i~v 100 (147)
+|--|.+ +.+ -++|..+|.. |+. -.+.++ .++..+|++|+++||.+-... .|.-|...|+...-+
T Consensus 85 AVKCN~d-p~v-l~~La~lG~g--fdc-------aSk~E~--~lvl~~gv~P~riIyanpcK~~s~IkyAa~~gV~~~tf 151 (448)
T KOG0622|consen 85 AVKCNSD-PKV-LRLLASLGCG--FDC-------ASKNEL--DLVLSLGVSPERIIYANPCKQVSQIKYAAKHGVSVMTF 151 (448)
T ss_pred eEEeCCC-HHH-HHHHHHcCcc--cee-------cChHHH--HHHHhcCCChHHeEecCCCccHHHHHHHHHcCCeEEee
Confidence 4444444 555 4667777764 332 112332 445578999999999998865 899999999987665
Q ss_pred C
Q 032106 101 G 101 (147)
Q Consensus 101 ~ 101 (147)
.
T Consensus 152 D 152 (448)
T KOG0622|consen 152 D 152 (448)
T ss_pred c
Confidence 3
No 344
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=47.83 E-value=22 Score=27.93 Aligned_cols=25 Identities=32% Similarity=0.563 Sum_probs=22.4
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEc
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVAS 26 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S 26 (147)
|.-||+..++++.|++.|+++.+.-
T Consensus 67 ~~~FPdp~~mi~~Lh~~G~~~~~~i 91 (317)
T cd06594 67 PERYPGLDELIEELKARGIRVLTYI 91 (317)
T ss_pred hhhCCCHHHHHHHHHHCCCEEEEEe
Confidence 6678999999999999999998765
No 345
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=47.80 E-value=6.8 Score=25.56 Aligned_cols=24 Identities=17% Similarity=0.434 Sum_probs=10.9
Q ss_pred hhHHHHHHHHHHCC--CeEEEEcCCC
Q 032106 6 PHAKGILHALKDKG--IDVAVASRSP 29 (147)
Q Consensus 6 pgv~~~L~~L~~~g--~~l~i~S~~~ 29 (147)
+.+.++++.+++.+ +.+.+.||+.
T Consensus 65 ~~l~~~i~~~~~~~~~~~i~i~TNg~ 90 (119)
T PF13394_consen 65 EDLIELIEYLKERGPEIKIRIETNGT 90 (119)
T ss_dssp HHHHHHHCTSTT-----EEEEEE-ST
T ss_pred HHHHHHHHHHHhhCCCceEEEEeCCe
Confidence 34555555555555 5566666554
No 346
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=47.77 E-value=17 Score=27.56 Aligned_cols=38 Identities=13% Similarity=0.346 Sum_probs=29.8
Q ss_pred CCCCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHh
Q 032106 1 MPSLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEK 40 (147)
Q Consensus 1 ~p~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~ 40 (147)
+|.+.-++.++++.|.+.|..+.|+|.- -..++.+..+
T Consensus 168 DPElv~EVL~vm~~LA~eGmTMivVTHE--M~FAr~Vadr 205 (240)
T COG1126 168 DPELVGEVLDVMKDLAEEGMTMIIVTHE--MGFAREVADR 205 (240)
T ss_pred CHHHHHHHHHHHHHHHHcCCeEEEEech--hHHHHHhhhe
Confidence 4788889999999999999999999932 4455555543
No 347
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=47.76 E-value=54 Score=22.39 Aligned_cols=42 Identities=24% Similarity=0.596 Sum_probs=30.3
Q ss_pred CCCchhHHHHHHHHHHC--CCeEEEEcCCCC--hHHHHHHHHhcCcc
Q 032106 2 PSLYPHAKGILHALKDK--GIDVAVASRSPS--PDIANTFLEKLNIK 44 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~--g~~l~i~S~~~~--~~~~~~~l~~~gl~ 44 (147)
|...+...++++.+++. ++.+.+.||... ...++. +...|+.
T Consensus 55 p~~~~~~~~~i~~~~~~~~~~~~~i~T~~~~~~~~~~~~-l~~~g~~ 100 (204)
T cd01335 55 PLLYPELAELLRRLKKELPGFEISIETNGTLLTEELLKE-LKELGLD 100 (204)
T ss_pred CCccHhHHHHHHHHHhhCCCceEEEEcCcccCCHHHHHH-HHhCCCc
Confidence 55667889999999998 899999998864 444433 4444543
No 348
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=47.75 E-value=44 Score=25.52 Aligned_cols=30 Identities=27% Similarity=0.344 Sum_probs=25.4
Q ss_pred CchhHHHHHHHHHHCCCeEEEEcCCCChHH
Q 032106 4 LYPHAKGILHALKDKGIDVAVASRSPSPDI 33 (147)
Q Consensus 4 ~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~ 33 (147)
.++.+.++++.+++.|+.+++.||+.....
T Consensus 97 q~e~~~~~~~~ake~Gl~~~l~TnG~~~~~ 126 (260)
T COG1180 97 QAEFALDLLRAAKERGLHVALDTNGFLPPE 126 (260)
T ss_pred hHHHHHHHHHHHHHCCCcEEEEcCCCCCHH
Confidence 356788999999999999999999986544
No 349
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=47.67 E-value=94 Score=21.66 Aligned_cols=63 Identities=5% Similarity=0.187 Sum_probs=38.4
Q ss_pred CCCCCcEEEEeCCc-c-cHHHHHHcCCeEEEECCCCChHHHHHHHHHHHHhhccchhhHHHHHHhhc
Q 032106 71 GVPFNSMLFFDDED-R-NIDAVSKMGVTGILVGNGVNLGALRQGLTKFSQNWNTSQKNKQKWISKFS 135 (147)
Q Consensus 71 ~~~~~~~v~VgDs~-~-Di~~a~~~Gi~~i~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 135 (147)
.+.|+= ++..... . .++...+.|+.++.+......+.+.+.+..+.+-.. ..+...++++.|.
T Consensus 58 ~l~PDl-ii~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~lg~~~g-~~~~a~~~~~~~~ 122 (195)
T cd01143 58 ALKPDL-VIVSSSSLAELLEKLKDAGIPVVVLPAASSLDEIYDQIELIGKITG-AEEEAEKLVKEMK 122 (195)
T ss_pred ccCCCE-EEEcCCcCHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHHHHHhC-ChHHHHHHHHHHH
Confidence 446663 3333322 2 356678899998888765445666666666666665 4566666665554
No 350
>PF02784 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, pyridoxal binding domain; InterPro: IPR022644 These enzymes are collectively known as group IV decarboxylases []. Pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates can be classified into two different families on the basis of sequence similarities [, ]. Members of this family while most probably evolutionary related, do not share extensive regions of sequence similarities. The proteins contain a conserved lysine residue which is known, in mouse ODC [], to be the site of attachment of the pyridoxal-phosphate group. The proteins also contain a stretch of three consecutive glycine residues and has been proposed to be part of a substrate- binding region [].; GO: 0003824 catalytic activity; PDB: 2OO0_A 2ON3_A 1D7K_B 3VAB_A 2J66_A 3C5Q_A 2QGH_A 1TWI_B 1TUF_A 3N2O_A ....
Probab=47.46 E-value=1.2e+02 Score=22.67 Aligned_cols=80 Identities=15% Similarity=0.265 Sum_probs=45.7
Q ss_pred HHHHHHHHCCCeEEEEc--CCCChHHHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHHcCCCCCcEEEEeCCcc--
Q 032106 10 GILHALKDKGIDVAVAS--RSPSPDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLFFDDEDR-- 85 (147)
Q Consensus 10 ~~L~~L~~~g~~l~i~S--~~~~~~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgDs~~-- 85 (147)
++.+.....+++++-+- |.+ +.++ ..+...|.. |+. . .+.=+ ..+.+.|++|++++|-|-...
T Consensus 11 ~~~~~~~~~~~~i~yA~KaN~~-~~vl-~~l~~~g~g--~dv---~-----S~~El-~~a~~~g~~~~~Ii~~gp~k~~~ 77 (251)
T PF02784_consen 11 AAWKAFLPYNVKIFYAVKANPN-PAVL-KILAEEGCG--FDV---A-----SPGEL-ELALKAGFPPDRIIFTGPGKSDE 77 (251)
T ss_dssp HHHHHHTTT-EEEEEEGGGS---HHHH-HHHHHTTCE--EEE---S-----SHHHH-HHHHHTTTTGGGEEEECSS--HH
T ss_pred HHHHhcCCCCcEEEEEECcCCC-HHHH-HHHHHcCCc--eEE---e-----cccch-HHHHhhhccccceeEecCcccHH
Confidence 34444433335555554 443 4554 446666642 443 1 12222 233458999999999998765
Q ss_pred cHHHHHHcCCeEEEECC
Q 032106 86 NIDAVSKMGVTGILVGN 102 (147)
Q Consensus 86 Di~~a~~~Gi~~i~v~~ 102 (147)
+++.|...|+..+-+..
T Consensus 78 ~l~~a~~~~~~~i~vDs 94 (251)
T PF02784_consen 78 ELEEAIENGVATINVDS 94 (251)
T ss_dssp HHHHHHHHTESEEEESS
T ss_pred HHHHHHhCCceEEEeCC
Confidence 78888888888888855
No 351
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=47.43 E-value=1.2e+02 Score=22.75 Aligned_cols=98 Identities=10% Similarity=0.071 Sum_probs=52.2
Q ss_pred chhHHHHHHHHHHCCCeEEEEcCCCC-hHHHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHHcCCCCCcEEEEeCC
Q 032106 5 YPHAKGILHALKDKGIDVAVASRSPS-PDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLFFDDE 83 (147)
Q Consensus 5 ~pgv~~~L~~L~~~g~~l~i~S~~~~-~~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgDs 83 (147)
.....++++.+++.|.+..++-|... .+.++.+++...---|+ .+......+=.+.....+.+--.+.++..+.+|=+
T Consensus 115 ~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~m-sv~~~~g~~~~~~~~~~i~~lr~~~~~~~i~v~gG 193 (244)
T PRK13125 115 PDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYY-GLRPATGVPLPVSVERNIKRVRNLVGNKYLVVGFG 193 (244)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEE-EeCCCCCCCchHHHHHHHHHHHHhcCCCCEEEeCC
Confidence 35777899999999999888886643 22334444433211122 21111111111222222211111222334778887
Q ss_pred c---ccHHHHHHcCCeEEEECCC
Q 032106 84 D---RNIDAVSKMGVTGILVGNG 103 (147)
Q Consensus 84 ~---~Di~~a~~~Gi~~i~v~~~ 103 (147)
. .++..+.++|...+.++..
T Consensus 194 I~~~e~i~~~~~~gaD~vvvGSa 216 (244)
T PRK13125 194 LDSPEDARDALSAGADGVVVGTA 216 (244)
T ss_pred cCCHHHHHHHHHcCCCEEEECHH
Confidence 7 3677777889999988764
No 352
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=47.10 E-value=1.2e+02 Score=23.87 Aligned_cols=32 Identities=22% Similarity=0.333 Sum_probs=23.8
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcc
Q 032106 9 KGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIK 44 (147)
Q Consensus 9 ~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~ 44 (147)
..+.+.|+++|+.+.++|... .+...+..|+.
T Consensus 18 l~la~~L~~rGh~V~~~t~~~----~~~~v~~~G~~ 49 (401)
T cd03784 18 VALAWALRAAGHEVRVATPPE----FADLVEAAGLE 49 (401)
T ss_pred HHHHHHHHHCCCeEEEeeCHh----HHHHHHHcCCc
Confidence 356788999999999999443 34566777774
No 353
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=46.76 E-value=1.4e+02 Score=23.54 Aligned_cols=31 Identities=19% Similarity=0.278 Sum_probs=23.3
Q ss_pred HHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcc
Q 032106 10 GILHALKDKGIDVAVASRSPSPDIANTFLEKLNIK 44 (147)
Q Consensus 10 ~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~ 44 (147)
.+-+.|+++|+.+.++|+.. ....++..|+.
T Consensus 14 ~lA~~L~~~Gh~V~~~~~~~----~~~~v~~~G~~ 44 (392)
T TIGR01426 14 GVVEELVARGHRVTYATTEE----FAERVEAAGAE 44 (392)
T ss_pred HHHHHHHhCCCeEEEEeCHH----HHHHHHHcCCE
Confidence 44578999999999999433 35667778874
No 354
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=46.36 E-value=35 Score=24.02 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHCCCeEEEEcCCC
Q 032106 6 PHAKGILHALKDKGIDVAVASRSP 29 (147)
Q Consensus 6 pgv~~~L~~L~~~g~~l~i~S~~~ 29 (147)
+++.++++.++++|.++..+|+..
T Consensus 115 ~~~i~~~~~ak~~Ga~vI~IT~~~ 138 (177)
T cd05006 115 PNVLKALEAAKERGMKTIALTGRD 138 (177)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCC
Confidence 678888888888898888888665
No 355
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=46.28 E-value=33 Score=27.93 Aligned_cols=41 Identities=24% Similarity=0.507 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCccccc
Q 032106 6 PHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMF 47 (147)
Q Consensus 6 pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f 47 (147)
.++.++=+.|++.|+++.+..+.. ..++..+++.+++...|
T Consensus 61 esL~~L~~~L~~~g~~L~v~~G~~-~~vl~~L~~~~~~~~V~ 101 (429)
T TIGR02765 61 ESLKDLRTSLRKLGSDLLVRSGKP-EDVLPELIKELGVRTVF 101 (429)
T ss_pred HHHHHHHHHHHHcCCCeEEEeCCH-HHHHHHHHHHhCCCEEE
Confidence 345555567888899999999655 67778888888886644
No 356
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=46.24 E-value=26 Score=25.96 Aligned_cols=34 Identities=26% Similarity=0.286 Sum_probs=20.4
Q ss_pred CCchhHHHHHHHHHHC-CCeEEEEcCCCChHHHHHH
Q 032106 3 SLYPHAKGILHALKDK-GIDVAVASRSPSPDIANTF 37 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~-g~~l~i~S~~~~~~~~~~~ 37 (147)
.+.|++.++|+.|.+. +..|+|+|+.. ....+.+
T Consensus 19 ~~~~~~~~~L~~La~~~~~~v~IvSGR~-~~~~~~~ 53 (235)
T PF02358_consen 19 VPPPELRELLRALAADPNNTVAIVSGRS-LDDLERF 53 (235)
T ss_dssp ---HHHHHHHHHHHHHSE--EEEE-SS--HHHHHHH
T ss_pred CCCHHHHHHHHHHhccCCCEEEEEEeCC-HHHhHHh
Confidence 5678999999999876 34699999776 4443333
No 357
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=46.11 E-value=21 Score=21.48 Aligned_cols=24 Identities=8% Similarity=0.105 Sum_probs=15.7
Q ss_pred HHHHHHHHHcCCCCCcEEEEeCCc
Q 032106 61 DHFQRIHSRTGVPFNSMLFFDDED 84 (147)
Q Consensus 61 ~~~~~~~~~~~~~~~~~v~VgDs~ 84 (147)
.....+|++.|+...++|.|||-.
T Consensus 43 ~Gv~~~L~~~G~~~GD~V~Ig~~e 66 (69)
T PF09269_consen 43 MGVEKALRKAGAKEGDTVRIGDYE 66 (69)
T ss_dssp TTHHHHHHTTT--TT-EEEETTEE
T ss_pred CCHHHHHHHcCCCCCCEEEEcCEE
Confidence 344566777888999999999854
No 358
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=45.72 E-value=39 Score=26.03 Aligned_cols=41 Identities=12% Similarity=0.093 Sum_probs=33.5
Q ss_pred cHHHHHHHHHHcCCCC--CcEEEEeCCcc-cHHHHHHcCCeEEE
Q 032106 59 KTDHFQRIHSRTGVPF--NSMLFFDDEDR-NIDAVSKMGVTGIL 99 (147)
Q Consensus 59 ~~~~~~~~~~~~~~~~--~~~v~VgDs~~-Di~~a~~~Gi~~i~ 99 (147)
--+.|..-++.+|++| .++-||.|..- .-.+|.-+|+.+.+
T Consensus 87 iQelYL~SL~~lGid~~~hDIRFVEDnWEsPTLGAwGLGWEVWl 130 (279)
T cd00733 87 IQELYLESLEALGINPKEHDIRFVEDNWESPTLGAWGLGWEVWL 130 (279)
T ss_pred HHHHHHHHHHHhCCCccccCeeEeecCCCCCcccccccccEEEE
Confidence 3457788889999988 77999999966 78889999988553
No 359
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=45.71 E-value=40 Score=22.01 Aligned_cols=36 Identities=17% Similarity=0.429 Sum_probs=27.7
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCccccc
Q 032106 9 KGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMF 47 (147)
Q Consensus 9 ~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f 47 (147)
..+++.++..|..+.+++.. +.+ ...+...|++..|
T Consensus 66 ~~~~~~~~~~g~~~~l~~i~--p~v-~~~~~~~gl~~~~ 101 (117)
T COG1366 66 VALLKSARLRGVELVLVGIQ--PEV-ARTLELTGLDKSF 101 (117)
T ss_pred HHHHHHHHhcCCeEEEEeCC--HHH-HHHHHHhCchhhc
Confidence 35668888999988888844 444 6789999998877
No 360
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=45.49 E-value=1.5e+02 Score=23.24 Aligned_cols=86 Identities=10% Similarity=0.150 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHHcCCCCCcEEEEeCCccc
Q 032106 7 HAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLFFDDEDRN 86 (147)
Q Consensus 7 gv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgDs~~D 86 (147)
...++++.|.+.|+.+++..+..+...++.+.+.++-...-..++.. .+.+-.-.-.+++. . -+|||....-
T Consensus 201 ~~a~l~~~l~~~~~~vvl~Gg~~e~~~~~~i~~~~~~~~~~~~~~l~--g~~sL~el~ali~~-----a-~l~I~nDTGp 272 (348)
T PRK10916 201 HYAELAQQLIDEGYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLA--GETQLEQAVILIAA-----C-KAIVTNDSGL 272 (348)
T ss_pred HHHHHHHHHHHCCCeEEEEeCHHhHHHHHHHHHhcccccccceeecc--CCCCHHHHHHHHHh-----C-CEEEecCChH
Confidence 34566667766677766665444333344444433211000000111 12222222333332 2 3778877788
Q ss_pred HHHHHHcCCeEEEE
Q 032106 87 IDAVSKMGVTGILV 100 (147)
Q Consensus 87 i~~a~~~Gi~~i~v 100 (147)
++.|.++|+.++.+
T Consensus 273 ~HlAaA~g~P~val 286 (348)
T PRK10916 273 MHVAAALNRPLVAL 286 (348)
T ss_pred HHHHHHhCCCEEEE
Confidence 88999999998877
No 361
>COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=45.28 E-value=25 Score=26.99 Aligned_cols=44 Identities=14% Similarity=0.089 Sum_probs=33.5
Q ss_pred CCCcHH----HHHHHHHHcCCCC--CcEEEEeCCcc-cHHHHHHcCCeEEE
Q 032106 56 WSHKTD----HFQRIHSRTGVPF--NSMLFFDDEDR-NIDAVSKMGVTGIL 99 (147)
Q Consensus 56 ~kp~~~----~~~~~~~~~~~~~--~~~v~VgDs~~-Di~~a~~~Gi~~i~ 99 (147)
-||.|+ .|..-++.+|++| .++=||.|..- --.+|.-.|+.+.+
T Consensus 85 lKPsP~NiQeLYL~SL~~lGid~~~HDIRFVEDnWE~PTlGawGlGWEVWl 135 (298)
T COG0752 85 IKPSPDNIQELYLGSLEALGIDPLEHDIRFVEDNWENPTLGAWGLGWEVWL 135 (298)
T ss_pred ecCCCccHHHHHHHHHHHcCCChhhcceeeeccCCCCCcccccccceeEEE
Confidence 466665 5667788999998 77999999966 56778888887543
No 362
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=44.99 E-value=40 Score=23.77 Aligned_cols=26 Identities=15% Similarity=0.236 Sum_probs=22.4
Q ss_pred chhHHHHHHHHHHCCCeEEEEcCCCC
Q 032106 5 YPHAKGILHALKDKGIDVAVASRSPS 30 (147)
Q Consensus 5 ~pgv~~~L~~L~~~g~~l~i~S~~~~ 30 (147)
-+++.++++.++++|.++..+|+...
T Consensus 88 t~~~i~~~~~ak~~g~~iI~IT~~~~ 113 (179)
T cd05005 88 TSSVVNAAEKAKKAGAKVVLITSNPD 113 (179)
T ss_pred cHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 46788999999999999999997663
No 363
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=44.97 E-value=1.6e+02 Score=23.42 Aligned_cols=84 Identities=14% Similarity=0.235 Sum_probs=44.2
Q ss_pred CchhHHHHHHHHHHC-CCeEEEEcCCCChHHHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHHcCCCCCcEEEEeC
Q 032106 4 LYPHAKGILHALKDK-GIDVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLFFDD 82 (147)
Q Consensus 4 ~~pgv~~~L~~L~~~-g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgD 82 (147)
.+-.+.++|+.|.+. ++++.+.-.++ +.....+.+.+. .+ +.+..+.. -...-|..+++.. .++|||
T Consensus 198 ~~~~i~~~l~~L~~~~~~~vi~~~hn~-p~~~~~i~~~l~--~~-~~v~~~~~--l~~~~~l~ll~~a------~~vvgd 265 (346)
T PF02350_consen 198 RLEQILEALKALAERQNVPVIFPLHNN-PRGSDIIIEKLK--KY-DNVRLIEP--LGYEEYLSLLKNA------DLVVGD 265 (346)
T ss_dssp -HHHHHHHHHHHHHHTTEEEEEE--S--HHHHHHHHHHHT--T--TTEEEE------HHHHHHHHHHE------SEEEES
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEecCC-chHHHHHHHHhc--cc-CCEEEECC--CCHHHHHHHHhcc------eEEEEc
Confidence 345677888888776 56554444332 333334333332 11 22212111 2344555555542 377999
Q ss_pred CcccHH-HHHHcCCeEEEE
Q 032106 83 EDRNID-AVSKMGVTGILV 100 (147)
Q Consensus 83 s~~Di~-~a~~~Gi~~i~v 100 (147)
|- .|. .|-.+|..++-+
T Consensus 266 Ss-GI~eEa~~lg~P~v~i 283 (346)
T PF02350_consen 266 SS-GIQEEAPSLGKPVVNI 283 (346)
T ss_dssp SH-HHHHHGGGGT--EEEC
T ss_pred Cc-cHHHHHHHhCCeEEEe
Confidence 99 888 999999999998
No 364
>PRK09534 btuF corrinoid ABC transporter substrate-binding protein; Reviewed
Probab=44.86 E-value=1e+02 Score=24.56 Aligned_cols=64 Identities=6% Similarity=0.074 Sum_probs=40.0
Q ss_pred CCCCCcEEEEeCCccc-HHHHHHcCCeEEEECCCCChHHHHHHHHHHHHhhccchhhHHHHHHhhc
Q 032106 71 GVPFNSMLFFDDEDRN-IDAVSKMGVTGILVGNGVNLGALRQGLTKFSQNWNTSQKNKQKWISKFS 135 (147)
Q Consensus 71 ~~~~~~~v~VgDs~~D-i~~a~~~Gi~~i~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 135 (147)
.++|+=++.-+....+ ++..+++|+.++.+......+++.+.++.+.+-++ ..+...+.++.|.
T Consensus 117 ~l~PDLVi~~~~~~~~~~~~L~~~gi~V~~~~~~~~l~~i~~~i~~lG~i~G-~e~~A~~li~~~~ 181 (359)
T PRK09534 117 GLDPDLVLAPNAVAGDTVTRLREAGITVFHFPAATSIEDVAEKTATIGRLTG-NCEAAAETNAEMR 181 (359)
T ss_pred cCCCCEEEEcCCCchHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHHHHHhC-CHHHHHHHHHHHH
Confidence 4566654443333333 77788899998888665566677666666666655 4555556655554
No 365
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=44.83 E-value=1.4e+02 Score=22.90 Aligned_cols=28 Identities=18% Similarity=0.426 Sum_probs=22.4
Q ss_pred CcEEEEeCCccc---HHHHHHcCCeEEEECC
Q 032106 75 NSMLFFDDEDRN---IDAVSKMGVTGILVGN 102 (147)
Q Consensus 75 ~~~v~VgDs~~D---i~~a~~~Gi~~i~v~~ 102 (147)
-+++||-|...| +..|+++||++|++.+
T Consensus 157 Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvD 187 (252)
T COG0052 157 PDVLFVIDPRKEKIAVKEANKLGIPVVALVD 187 (252)
T ss_pred CCEEEEeCCcHhHHHHHHHHHcCCCEEEEec
Confidence 357888888776 7778889999998864
No 366
>PLN02591 tryptophan synthase
Probab=44.83 E-value=1.4e+02 Score=22.78 Aligned_cols=100 Identities=7% Similarity=0.143 Sum_probs=51.9
Q ss_pred CchhHHHHHHHHHHCCCeEE-EEcCCCChHHHHHHHHhc-CcccccccceecCCCCCcHHHHHHHHHHcCCCCCcEEEEe
Q 032106 4 LYPHAKGILHALKDKGIDVA-VASRSPSPDIANTFLEKL-NIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLFFD 81 (147)
Q Consensus 4 ~~pgv~~~L~~L~~~g~~l~-i~S~~~~~~~~~~~l~~~-gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~Vg 81 (147)
++.+..++.+.+++.|+... ++|.+...+.++.+.+.. |+-.+.......+.....+..+...+++..-..+--++||
T Consensus 116 P~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~vG 195 (250)
T PLN02591 116 PLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVTDKPVAVG 195 (250)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcCCCceEEe
Confidence 34567788888888885544 444333223333434332 3321212111112111223334443333322235568888
Q ss_pred CCcc---cHHHHHHcCCeEEEECCC
Q 032106 82 DEDR---NIDAVSKMGVTGILVGNG 103 (147)
Q Consensus 82 Ds~~---Di~~a~~~Gi~~i~v~~~ 103 (147)
=+.+ |+..+...|...+.|+..
T Consensus 196 FGI~~~e~v~~~~~~GADGvIVGSa 220 (250)
T PLN02591 196 FGISKPEHAKQIAGWGADGVIVGSA 220 (250)
T ss_pred CCCCCHHHHHHHHhcCCCEEEECHH
Confidence 8777 677777788988888764
No 367
>cd01149 HutB Hemin binding protein HutB. These proteins have been shown to function as initial receptors in ABC transport of hemin and hemoproteins in many eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=44.55 E-value=1.2e+02 Score=22.10 Aligned_cols=64 Identities=13% Similarity=0.169 Sum_probs=39.3
Q ss_pred CCCCCcEEEEeCCcc--cHHHHHHcCCeEEEECCCCChHHHHHHHHHHHHhhccchhhHHHHHHhhc
Q 032106 71 GVPFNSMLFFDDEDR--NIDAVSKMGVTGILVGNGVNLGALRQGLTKFSQNWNTSQKNKQKWISKFS 135 (147)
Q Consensus 71 ~~~~~~~v~VgDs~~--Di~~a~~~Gi~~i~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 135 (147)
.+.|+=++..+.... .++.-.++|+.++.+........+.+.+..+...++ ..+.+..+++.|.
T Consensus 56 ~l~PDlIi~~~~~~~~~~~~~l~~~gipvv~~~~~~~~~~~~~~~~~lg~i~g-~e~~A~~l~~~~~ 121 (235)
T cd01149 56 SLKPTLVIASDEAGPPEALDQLRAAGVPVVTVPSTPTLDGLLTKIRQVAQALG-VPEKGEALAQEVR 121 (235)
T ss_pred ccCCCEEEEcCCCCCHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHHHHHhC-CHHHHHHHHHHHH
Confidence 346665554443322 466667899999888765556667776666666655 4455555555444
No 368
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=44.37 E-value=1.3e+02 Score=22.32 Aligned_cols=71 Identities=18% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHh-cCcccccccceecCCCCCcHHHHHHHHHHcCCCCC--cEEEEe
Q 032106 8 AKGILHALKDKGIDVAVASRSPSPDIANTFLEK-LNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFN--SMLFFD 81 (147)
Q Consensus 8 v~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~-~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~--~~v~Vg 81 (147)
+..+++.|++. +++++++|--....-...+.+ .|.. .-.++.-..+--+..+...+++++..... +.+||+
T Consensus 30 ie~~~~~L~~~-~~~aVI~~Di~t~~Da~~l~~~~g~~--i~~v~TG~~CH~da~m~~~ai~~l~~~~~~~Dll~iE 103 (202)
T COG0378 30 IEKTLRALKDE-YKIAVITGDIYTKEDADRLRKLPGEP--IIGVETGKGCHLDASMNLEAIEELVLDFPDLDLLFIE 103 (202)
T ss_pred HHHHHHHHHhh-CCeEEEeceeechhhHHHHHhCCCCe--eEEeccCCccCCcHHHHHHHHHHHhhcCCcCCEEEEe
No 369
>PRK13937 phosphoheptose isomerase; Provisional
Probab=44.35 E-value=43 Score=24.02 Aligned_cols=25 Identities=12% Similarity=0.197 Sum_probs=20.0
Q ss_pred chhHHHHHHHHHHCCCeEEEEcCCC
Q 032106 5 YPHAKGILHALKDKGIDVAVASRSP 29 (147)
Q Consensus 5 ~pgv~~~L~~L~~~g~~l~i~S~~~ 29 (147)
-+.+.++++.++++|.++..+|+..
T Consensus 119 t~~~~~~~~~ak~~g~~~I~iT~~~ 143 (188)
T PRK13937 119 SPNVLAALEKARELGMKTIGLTGRD 143 (188)
T ss_pred cHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4677888888888888888888655
No 370
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=44.10 E-value=1.2e+02 Score=21.67 Aligned_cols=14 Identities=14% Similarity=0.043 Sum_probs=9.4
Q ss_pred cHHHHHHHHHHcCC
Q 032106 59 KTDHFQRIHSRTGV 72 (147)
Q Consensus 59 ~~~~~~~~~~~~~~ 72 (147)
....++.+++..|-
T Consensus 147 ~~~~L~~ia~~tgG 160 (183)
T cd01453 147 EMHICKEICKATNG 160 (183)
T ss_pred HHHHHHHHHHHhCC
Confidence 45677777777763
No 371
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=43.73 E-value=72 Score=19.16 Aligned_cols=38 Identities=21% Similarity=0.316 Sum_probs=24.5
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHh
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEK 40 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~ 40 (147)
|.-|.++.+....|++...-+.-+++-. ...+++++..
T Consensus 6 p~~~~D~~~i~~~l~~g~~Vivnl~~l~-~~~~~Ri~Df 43 (73)
T PF04472_consen 6 PKSFEDAREIVDALREGKIVIVNLENLD-DEEAQRILDF 43 (73)
T ss_dssp -SSGGGHHHHHHHHHTT--EEEE-TTS--HHHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHcCCEEEEECCCCC-HHHHHHHHHH
Confidence 7889999999999998867666666555 4555555543
No 372
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=43.72 E-value=33 Score=20.64 Aligned_cols=57 Identities=14% Similarity=0.088 Sum_probs=33.5
Q ss_pred EEEEcCCCChHHHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHHcCCCCCcEEEEeCCc
Q 032106 22 VAVASRSPSPDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLFFDDED 84 (147)
Q Consensus 22 l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgDs~ 84 (147)
++++++.. ++.++.+.++... +...-+ ...=+......+|++.|+.+.++|.|||-.
T Consensus 10 ~~~V~g~~----ier~~~~~~~~~~-e~~~~f-~~~L~~~Gv~~~L~~~G~~~GD~V~Ig~~e 66 (69)
T TIGR03595 10 VFVVSGKK----IERWVAKTPFNND-ENLRRF-ARKLKKLGVEDALRKAGAKDGDTVRIGDFE 66 (69)
T ss_pred eEEEechH----HHHHHHHcCCCCH-HHHHHH-HHHHHHCCHHHHHHHcCCCCCCEEEEccEE
Confidence 57777322 5777888777532 111000 001123345677788889999999999854
No 373
>PF03332 PMM: Eukaryotic phosphomannomutase; InterPro: IPR005002 This enzyme (5.4.2.8 from EC) is involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.; GO: 0004615 phosphomannomutase activity, 0019307 mannose biosynthetic process, 0005737 cytoplasm; PDB: 2I55_B 2I54_C 3F9R_A 2FUE_A 2FUC_A 2AMY_A 2Q4R_A.
Probab=43.70 E-value=36 Score=25.54 Aligned_cols=25 Identities=32% Similarity=0.492 Sum_probs=19.0
Q ss_pred HHHHHHHHHHCCCeEEEEcCCCChHH
Q 032106 8 AKGILHALKDKGIDVAVASRSPSPDI 33 (147)
Q Consensus 8 v~~~L~~L~~~g~~l~i~S~~~~~~~ 33 (147)
+.++|..|++. +.++|+|+++.+.+
T Consensus 1 M~~~L~~L~~~-~~vgvVgGsd~~k~ 25 (220)
T PF03332_consen 1 MAELLQKLRKK-VPVGVVGGSDLPKI 25 (220)
T ss_dssp HHHHHHHHHTT-SEEEEEESS-HHHH
T ss_pred CHHHHHHHHhc-CeEEEEcchhHHHH
Confidence 46889999876 99999998874333
No 374
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=43.53 E-value=42 Score=25.90 Aligned_cols=48 Identities=19% Similarity=0.158 Sum_probs=32.9
Q ss_pred CCcHHHHHHHHHHcCCCCCcEEEEeCCcccHHHHHHcC---CeEEEECCCC
Q 032106 57 SHKTDHFQRIHSRTGVPFNSMLFFDDEDRNIDAVSKMG---VTGILVGNGV 104 (147)
Q Consensus 57 kp~~~~~~~~~~~~~~~~~~~v~VgDs~~Di~~a~~~G---i~~i~v~~~~ 104 (147)
..|...+.++..+.+....-+++.||...|-.+...+. -.++-+..+.
T Consensus 181 ~~KG~a~~~i~~~~~~~~~~~~~aGDD~TDE~~F~~v~~~~~~~v~v~~~~ 231 (266)
T COG1877 181 VSKGAAIKYIMDELPFDGRFPIFAGDDLTDEDAFAAVNKLDSITVKVGVGS 231 (266)
T ss_pred cchHHHHHHHHhcCCCCCCcceecCCCCccHHHHHhhccCCCceEEecCCc
Confidence 33677777888877776667999999999866655543 4455555443
No 375
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.51 E-value=1.9e+02 Score=24.06 Aligned_cols=43 Identities=12% Similarity=0.225 Sum_probs=32.4
Q ss_pred cccc--eecCCCCCcHHHHHHHHHHc-CCCCCcEEEEeCCcccHHH
Q 032106 47 FVAK--EIFSSWSHKTDHFQRIHSRT-GVPFNSMLFFDDEDRNIDA 89 (147)
Q Consensus 47 f~~~--~~~~~~kp~~~~~~~~~~~~-~~~~~~~v~VgDs~~Di~~ 89 (147)
||.+ +..+.-+...++|++..+-- -+.|++++||=|+..+-.+
T Consensus 184 fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaa 229 (483)
T KOG0780|consen 184 FDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAA 229 (483)
T ss_pred CcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhH
Confidence 4543 55666788889998887754 4789999999999876544
No 376
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=43.50 E-value=25 Score=22.09 Aligned_cols=19 Identities=11% Similarity=0.195 Sum_probs=17.0
Q ss_pred HHHHHcCCCCCcEEEEeCC
Q 032106 65 RIHSRTGVPFNSMLFFDDE 83 (147)
Q Consensus 65 ~~~~~~~~~~~~~v~VgDs 83 (147)
.-++.+|+.|++++||-|.
T Consensus 63 ~TL~e~GL~P~~~LfVq~r 81 (82)
T cd01773 63 ITLQEAGLCPQETVFVQER 81 (82)
T ss_pred CCHHHcCCCCCcEEEEecC
Confidence 4788999999999999986
No 377
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=43.48 E-value=37 Score=20.35 Aligned_cols=22 Identities=23% Similarity=0.212 Sum_probs=19.3
Q ss_pred chhHHHHHHHHHHCCCeEEEEc
Q 032106 5 YPHAKGILHALKDKGIDVAVAS 26 (147)
Q Consensus 5 ~pgv~~~L~~L~~~g~~l~i~S 26 (147)
-+++.++++.++++|.++..+|
T Consensus 60 t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 60 TEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CHHHHHHHHHHHHcCCeEEEEe
Confidence 3678899999999999998887
No 378
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=43.44 E-value=1.6e+02 Score=23.08 Aligned_cols=84 Identities=12% Similarity=0.161 Sum_probs=49.0
Q ss_pred chhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHHcCCCCCcEEEEeCCc
Q 032106 5 YPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLFFDDED 84 (147)
Q Consensus 5 ~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgDs~ 84 (147)
.....++++.|.+.|+.+.++.+..+.+.++.+.+.++-... -.++..-.-+..++.. .+ ++||-..
T Consensus 194 ~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~~~~~~~~-------l~~k~sL~e~~~li~~-----a~-l~I~~DS 260 (334)
T COG0859 194 LEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAKGLPNAVI-------LAGKTSLEELAALIAG-----AD-LVIGNDS 260 (334)
T ss_pred HHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHHhcCCccc-------cCCCCCHHHHHHHHhc-----CC-EEEccCC
Confidence 346778999999999888887766544454455544432110 1122222223333322 22 4666666
Q ss_pred ccHHHHHHcCCeEEEEC
Q 032106 85 RNIDAVSKMGVTGILVG 101 (147)
Q Consensus 85 ~Di~~a~~~Gi~~i~v~ 101 (147)
.=++.|.+.|..+|++-
T Consensus 261 g~~HlAaA~~~P~I~iy 277 (334)
T COG0859 261 GPMHLAAALGTPTIALY 277 (334)
T ss_pred hHHHHHHHcCCCEEEEE
Confidence 66777788888888874
No 379
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=43.41 E-value=43 Score=25.84 Aligned_cols=40 Identities=13% Similarity=0.102 Sum_probs=32.9
Q ss_pred HHHHHHHHHHcCCCC--CcEEEEeCCcc-cHHHHHHcCCeEEE
Q 032106 60 TDHFQRIHSRTGVPF--NSMLFFDDEDR-NIDAVSKMGVTGIL 99 (147)
Q Consensus 60 ~~~~~~~~~~~~~~~--~~~v~VgDs~~-Di~~a~~~Gi~~i~ 99 (147)
-+.|..-++.+|++| .++-||.|..- .-.+|.-+|+.+.+
T Consensus 92 QelYL~SL~~lGid~~~hDIRFVEDnWEsPTLGAwGlGWEVWl 134 (283)
T PRK09348 92 QELYLGSLEALGIDPLEHDIRFVEDNWESPTLGAWGLGWEVWL 134 (283)
T ss_pred HHHHHHHHHHhCCCccccceeEeecCCCCCcccccccceEEEE
Confidence 357788889999988 77999999966 68889999988553
No 380
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=43.35 E-value=1.5e+02 Score=22.61 Aligned_cols=89 Identities=11% Similarity=0.103 Sum_probs=54.1
Q ss_pred HHHHHHHHCCCeEEEEcCC------CChHHHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHHcCCCCCcEEEEeCC
Q 032106 10 GILHALKDKGIDVAVASRS------PSPDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLFFDDE 83 (147)
Q Consensus 10 ~~L~~L~~~g~~l~i~S~~------~~~~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgDs 83 (147)
.+++..++......|+|++ ++....+..+-.+|+..---..+. .+...-+....+.+-++. .+++.|-+.
T Consensus 72 ~A~~LYk~gk~~~ilvSGg~~~~~~~Ea~~M~~yLi~~GVp~e~Ii~e~--~s~nT~en~~~a~~i~~~--~~~iIVTq~ 147 (239)
T PRK10834 72 GAINAYNSGKVNYLLLSGDNALQSYNEPMTMRKDLIAAGVDPSDIVLDY--AGFRTLDSIVRTRKVFDT--NDFIIITQR 147 (239)
T ss_pred HHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHHHHHHcCCCHHHEEecC--CCCCHHHHHHHHHHHhCC--CCEEEECCH
Confidence 4445455555778899975 334455666777787642111112 222344555555555554 468899888
Q ss_pred cc---cHHHHHHcCCeEEEECC
Q 032106 84 DR---NIDAVSKMGVTGILVGN 102 (147)
Q Consensus 84 ~~---Di~~a~~~Gi~~i~v~~ 102 (147)
.+ -+..|++.|+.+++++.
T Consensus 148 fHm~RA~~ia~~~Gi~~~~~~a 169 (239)
T PRK10834 148 FHCERALFIALHMGIQAQCYAV 169 (239)
T ss_pred HHHHHHHHHHHHcCCceEEEeC
Confidence 66 46778999999888864
No 381
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=43.23 E-value=45 Score=27.72 Aligned_cols=42 Identities=10% Similarity=0.271 Sum_probs=31.4
Q ss_pred chhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCccccc
Q 032106 5 YPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMF 47 (147)
Q Consensus 5 ~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f 47 (147)
+.++.++=+.|++.|+++.+..+.. ..++..+++..++...|
T Consensus 54 ~esL~~L~~~L~~~G~~L~v~~G~p-~~vl~~l~~~~~~~~V~ 95 (471)
T TIGR03556 54 IGCLQELQQRYQQAGSQLLILQGDP-VQLIPQLAQQLGAKAVY 95 (471)
T ss_pred HHHHHHHHHHHHHCCCCeEEEECCH-HHHHHHHHHHcCCCEEE
Confidence 3455666678888899999999665 67777888888877654
No 382
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=43.21 E-value=1.7e+02 Score=23.25 Aligned_cols=109 Identities=13% Similarity=0.125 Sum_probs=52.7
Q ss_pred HHHHC-CCeE-EEEcCCC-ChHHHHHHHHhcCcccccccceecCCCCCcHHHHHHHHH----Hc-CCCCCcEEEEeCCcc
Q 032106 14 ALKDK-GIDV-AVASRSP-SPDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHS----RT-GVPFNSMLFFDDEDR 85 (147)
Q Consensus 14 ~L~~~-g~~l-~i~S~~~-~~~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~----~~-~~~~~~~v~VgDs~~ 85 (147)
+|++. ++.+ .|+|+.+ .......+.+.+++ ...+..-... .......+-.++. .+ ...|+=+++.||+..
T Consensus 2 ~l~~~~~~~~~li~tG~H~~~~~g~~~~~~f~i-~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~Pd~Vlv~GD~~~ 79 (346)
T PF02350_consen 2 ALQKDPGFELILIVTGQHLDPEMGDTFFEGFGI-PKPDYLLDSD-SQSMAKSTGLAIIELADVLEREKPDAVLVLGDRNE 79 (346)
T ss_dssp HHHCSTTEEEEEEEECSS--CHHHHHHHHHTT---SEEEE--ST-TS-HHHHHHHHHHHHHHHHHHHT-SEEEEETTSHH
T ss_pred hhhhCCCCCEEEEEeCCCCCHHHHHHHHhhCCC-CCCCcccccc-cchHHHHHHHHHHHHHHHHHhcCCCEEEEEcCCch
Confidence 44444 5444 4555444 14555566677777 3332210111 1112222222222 11 247899999999987
Q ss_pred cH---HHHHHcCCeEEEECCC---------CChHHHHHHHHHHHHhhccch
Q 032106 86 NI---DAVSKMGVTGILVGNG---------VNLGALRQGLTKFSQNWNTSQ 124 (147)
Q Consensus 86 Di---~~a~~~Gi~~i~v~~~---------~~~~~~~~~l~~~~~~~~~~~ 124 (147)
=+ .+|..++++.+.+.-| ...+..+..+.++...+...-
T Consensus 80 ~la~alaA~~~~ipv~HieaGlRs~d~~~g~~de~~R~~i~~la~lhf~~t 130 (346)
T PF02350_consen 80 ALAAALAAFYLNIPVAHIEAGLRSGDRTEGMPDEINRHAIDKLAHLHFAPT 130 (346)
T ss_dssp HHHHHHHHHHTT-EEEEES-----S-TTSSTTHHHHHHHHHHH-SEEEESS
T ss_pred HHHHHHHHHHhCCCEEEecCCCCccccCCCCchhhhhhhhhhhhhhhccCC
Confidence 44 4566679999999766 333455566666665554443
No 383
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=43.14 E-value=71 Score=26.01 Aligned_cols=20 Identities=20% Similarity=0.469 Sum_probs=17.3
Q ss_pred cccHHHHHHcCCeEEEECCC
Q 032106 84 DRNIDAVSKMGVTGILVGNG 103 (147)
Q Consensus 84 ~~Di~~a~~~Gi~~i~v~~~ 103 (147)
..||+.|+++||..+.+..+
T Consensus 20 ~~di~~A~~~GIDgFaLNig 39 (386)
T PF03659_consen 20 EADIRLAQAAGIDGFALNIG 39 (386)
T ss_pred HHHHHHHHHcCCCEEEEecc
Confidence 45899999999999988876
No 384
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=43.13 E-value=1.3e+02 Score=23.47 Aligned_cols=40 Identities=15% Similarity=0.293 Sum_probs=31.7
Q ss_pred chhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcc
Q 032106 5 YPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIK 44 (147)
Q Consensus 5 ~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~ 44 (147)
.||+..+-+.|+..|..+.|+|.......++..++.+++.
T Consensus 62 P~GA~aLa~aL~~lG~~~~ivtd~~~~~~~~~~~~~~~~~ 101 (291)
T PF14336_consen 62 PPGAAALARALQALGKEVVIVTDERCAPVVKAAVRAAGLQ 101 (291)
T ss_pred hHHHHHHHHHHHHcCCeEEEEECHHHHHHHHHHHHHHhhC
Confidence 5889999999999999999999666556666666666653
No 385
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=43.13 E-value=43 Score=23.14 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=20.1
Q ss_pred chhHHHHHHHHHHCCCeEEEEcCCC
Q 032106 5 YPHAKGILHALKDKGIDVAVASRSP 29 (147)
Q Consensus 5 ~pgv~~~L~~L~~~g~~l~i~S~~~ 29 (147)
-+.+.++++.++++|.++..+|+..
T Consensus 92 t~~~~~~~~~a~~~g~~ii~iT~~~ 116 (154)
T TIGR00441 92 SKNVLKAIEAAKDKGMKTITLAGKD 116 (154)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 3567888888889999888888655
No 386
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=43.01 E-value=45 Score=27.25 Aligned_cols=44 Identities=11% Similarity=0.098 Sum_probs=32.4
Q ss_pred cHHHHHHHHHHc----CCCCCcEEEEeCCc-----ccHHHHHHcCCeEEEECCCC
Q 032106 59 KTDHFQRIHSRT----GVPFNSMLFFDDED-----RNIDAVSKMGVTGILVGNGV 104 (147)
Q Consensus 59 ~~~~~~~~~~~~----~~~~~~~v~VgDs~-----~Di~~a~~~Gi~~i~v~~~~ 104 (147)
|.....-+++.+ ++.+++++.|||.. ||.. |+.++ .++||..+.
T Consensus 350 Ks~GV~~lQ~y~~~~~~i~~~~tLHVGDQF~s~GaNDfk-aR~a~-~t~WIasP~ 402 (408)
T PF06437_consen 350 KSLGVRALQKYFDPEGGIKPSETLHVGDQFLSAGANDFK-ARLAC-TTAWIASPQ 402 (408)
T ss_pred cHHhHHHHHHHHHhccCCCccceeeehhhhhccCCcchh-hhhhc-eeeEecCHH
Confidence 677777777777 89999999999974 4554 55544 567886643
No 387
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=42.98 E-value=80 Score=20.00 Aligned_cols=34 Identities=21% Similarity=0.275 Sum_probs=23.6
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCccc
Q 032106 9 KGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKS 45 (147)
Q Consensus 9 ~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~ 45 (147)
.++.+.++..|..+.++. -+ +.+ ...++..|+..
T Consensus 63 ~~~~~~~~~~g~~l~l~g-~~-~~v-~~~l~~~gl~~ 96 (109)
T cd07041 63 LRLARALRLLGARTILTG-IR-PEV-AQTLVELGIDL 96 (109)
T ss_pred HHHHHHHHHcCCeEEEEe-CC-HHH-HHHHHHhCCCh
Confidence 455677777888888877 33 343 57788888765
No 388
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=42.74 E-value=1.2e+02 Score=21.85 Aligned_cols=63 Identities=5% Similarity=0.184 Sum_probs=42.9
Q ss_pred CCCCcEEEEeCC--cccHHHHHHcCCeEEEECCCCChHHHHHHHHHHHHhhccchhhHHHHHHhhc
Q 032106 72 VPFNSMLFFDDE--DRNIDAVSKMGVTGILVGNGVNLGALRQGLTKFSQNWNTSQKNKQKWISKFS 135 (147)
Q Consensus 72 ~~~~~~v~VgDs--~~Di~~a~~~Gi~~i~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 135 (147)
+.|+=++..+.. ..........|+.++.+......+.+.+.+..+.+... ..+....+++.|.
T Consensus 59 l~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~i~~lg~~~g-~~~~a~~~~~~~~ 123 (238)
T PF01497_consen 59 LKPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSSPFDDWKEQIRQLGKALG-KEDQAEALIAEYD 123 (238)
T ss_dssp T--SEEEEETTSSCHHHHHHHHHTTSEEEEESSTTCSHHHHHHHHHHHHHHT-SHHHHHHHHHHHH
T ss_pred CCCCEEEEeccccchHHHHHHhcccceEEEeecccchHHHHHHHHHHHHhcc-cHHHHHHHHHHHH
Confidence 356655555544 24677788899999999876654777777777777776 5566777776665
No 389
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=42.55 E-value=43 Score=21.92 Aligned_cols=35 Identities=6% Similarity=0.193 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCc
Q 032106 6 PHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNI 43 (147)
Q Consensus 6 pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl 43 (147)
+++.++++.++++|.++..+|+.. .. .......+.
T Consensus 57 ~e~i~~~~~a~~~g~~iI~IT~~~--~l-~~~~~~~~~ 91 (119)
T cd05017 57 EETLSAVEQAKERGAKIVAITSGG--KL-LEMAREHGV 91 (119)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCc--hH-HHHHHHcCC
Confidence 578899999999999999999543 33 344554443
No 390
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=42.46 E-value=75 Score=26.01 Aligned_cols=80 Identities=16% Similarity=0.165 Sum_probs=54.9
Q ss_pred chhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccc-eecCCCCCcHHHHHHHHHHcCCCCCcEEEEeCC
Q 032106 5 YPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAK-EIFSSWSHKTDHFQRIHSRTGVPFNSMLFFDDE 83 (147)
Q Consensus 5 ~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~-~~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgDs 83 (147)
-|++..++..+.+- +++++.|... ...++.++..++=...|... .-..+.-+... |..-+..++...+.+++|+.+
T Consensus 254 Rp~l~~fl~~ls~~-~~l~~ft~s~-~~y~~~v~d~l~~~k~~~~~lfr~sc~~~~G~-~ikDis~i~r~l~~viiId~~ 330 (390)
T COG5190 254 RPELDYFLGKLSKI-HELVYFTASV-KRYADPVLDILDSDKVFSHRLFRESCVSYLGV-YIKDISKIGRSLDKVIIIDNS 330 (390)
T ss_pred ChHHHHHHhhhhhh-EEEEEEecch-hhhcchHHHhccccceeehhhhcccceeccCc-hhhhHHhhccCCCceEEeeCC
Confidence 47788888888777 9999999654 56667777777655544432 11122334444 545567778888999999999
Q ss_pred cccH
Q 032106 84 DRNI 87 (147)
Q Consensus 84 ~~Di 87 (147)
+.=.
T Consensus 331 p~SY 334 (390)
T COG5190 331 PASY 334 (390)
T ss_pred hhhh
Confidence 8855
No 391
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=42.14 E-value=29 Score=27.19 Aligned_cols=25 Identities=16% Similarity=0.420 Sum_probs=22.3
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEc
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVAS 26 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S 26 (147)
+.-||+..++++.|++.|+++.+..
T Consensus 69 ~~~FPdp~~mi~~L~~~g~k~~~~i 93 (317)
T cd06599 69 KDRFPDPAAFVAKFHERGIRLAPNI 93 (317)
T ss_pred cccCCCHHHHHHHHHHCCCEEEEEe
Confidence 5679999999999999999998744
No 392
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=42.02 E-value=45 Score=21.95 Aligned_cols=31 Identities=19% Similarity=0.340 Sum_probs=22.5
Q ss_pred HHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcc
Q 032106 10 GILHALKDKGIDVAVASRSPSPDIANTFLEKLNIK 44 (147)
Q Consensus 10 ~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~ 44 (147)
.+-+.|+++|+.+.++|+.. .+...+..|+.
T Consensus 17 ala~~L~~rGh~V~~~~~~~----~~~~v~~~Gl~ 47 (139)
T PF03033_consen 17 ALARALRRRGHEVRLATPPD----FRERVEAAGLE 47 (139)
T ss_dssp HHHHHHHHTT-EEEEEETGG----GHHHHHHTT-E
T ss_pred HHHHHHhccCCeEEEeeccc----ceecccccCce
Confidence 56789999999999999544 34556889986
No 393
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=41.95 E-value=4.8 Score=31.00 Aligned_cols=111 Identities=14% Similarity=0.206 Sum_probs=67.7
Q ss_pred CchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCc-ccccccc---eecCCCCCcHHHHHHHHHHcCCCCCcEEE
Q 032106 4 LYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNI-KSMFVAK---EIFSSWSHKTDHFQRIHSRTGVPFNSMLF 79 (147)
Q Consensus 4 ~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl-~~~f~~~---~~~~~~kp~~~~~~~~~~~~~~~~~~~v~ 79 (147)
-.|++-++|..+.+. +.+.+.|.+. ...+..++..++- ...|... +.+. -....|-+-+...|.+..++++
T Consensus 132 kRP~vdeFL~~~s~~-~e~v~FTAs~-~~Ya~~v~D~LD~~~~i~~~RlyR~~C~---~~~g~yvKdls~~~~dL~~viI 206 (262)
T KOG1605|consen 132 KRPHVDEFLSRVSKW-YELVLFTASL-EVYADPLLDILDPDRKIISHRLYRDSCT---LKDGNYVKDLSVLGRDLSKVII 206 (262)
T ss_pred cCCCHHHHHHHhHHH-HHHHHHHhhh-HHHHHHHHHHccCCCCeeeeeecccceE---eECCcEEEEcceeccCcccEEE
Confidence 368999999999877 8888888665 6667778877764 2222221 0110 1111222222556778899999
Q ss_pred EeCCcccHHHHHHcCCeEE-EECCCCChHHHHHHHHHHHHhhc
Q 032106 80 FDDEDRNIDAVSKMGVTGI-LVGNGVNLGALRQGLTKFSQNWN 121 (147)
Q Consensus 80 VgDs~~Di~~a~~~Gi~~i-~v~~~~~~~~~~~~l~~~~~~~~ 121 (147)
|+|++.-...=-..||..- |+..... .++. .+-.|.+...
T Consensus 207 iDNsP~sy~~~p~NgIpI~sw~~d~~D-~eLL-~LlpfLe~L~ 247 (262)
T KOG1605|consen 207 VDNSPQSYRLQPENGIPIKSWFDDPTD-TELL-KLLPFLEALA 247 (262)
T ss_pred EcCChHHhccCccCCCcccccccCCCh-HHHH-HHHHHHHHhc
Confidence 9999998777677788644 3333332 2333 3456666654
No 394
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit. This tetrameric form of glycyl-tRNA synthetase (2 alpha, 2 beta) is found in the majority of completed eubacterial genomes, with the two genes fused in a few species. A substantially different homodimeric form (not recognized by this model) replaces this form in the Archaea, animals, yeasts, and some eubacteria.
Probab=41.48 E-value=50 Score=25.63 Aligned_cols=40 Identities=13% Similarity=0.105 Sum_probs=32.8
Q ss_pred HHHHHHHHHHcCCCC--CcEEEEeCCcc-cHHHHHHcCCeEEE
Q 032106 60 TDHFQRIHSRTGVPF--NSMLFFDDEDR-NIDAVSKMGVTGIL 99 (147)
Q Consensus 60 ~~~~~~~~~~~~~~~--~~~v~VgDs~~-Di~~a~~~Gi~~i~ 99 (147)
-+.|..-++.+|++| .++-||.|..- .-..|.-+|+.+.+
T Consensus 89 QelYL~SL~~lGid~~~hDIRFVEDnWEsPTLGAwGlGWEVWl 131 (293)
T TIGR00388 89 QELYLDSLRALGIDPTEHDIRFVEDNWENPTLGAWGLGWEVWL 131 (293)
T ss_pred HHHHHHHHHHhCCCccccCeeEeecCCCCCcccccccccEEEE
Confidence 357778889999988 77999999966 68889999988553
No 395
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=41.22 E-value=1.1e+02 Score=23.66 Aligned_cols=39 Identities=13% Similarity=0.150 Sum_probs=27.2
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCccccccc
Q 032106 9 KGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVA 49 (147)
Q Consensus 9 ~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~ 49 (147)
.++++.+++.|+++.+-|=+. +...+. +..+|++..+..
T Consensus 251 ~~~v~~~~~~G~~v~vWTVNd-~~~~~~-l~~~GVdgIiTD 289 (300)
T cd08612 251 PSLFRHLQKRGIQVYGWVLND-EEEFER-AFELGADGVMTD 289 (300)
T ss_pred HHHHHHHHHCCCEEEEeecCC-HHHHHH-HHhcCCCEEEeC
Confidence 577888899999999999333 555555 445788766543
No 396
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=41.00 E-value=68 Score=23.33 Aligned_cols=104 Identities=17% Similarity=0.265 Sum_probs=52.0
Q ss_pred HHHHHHHHHHCCCeEEEEcCCCChH-------HHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHHcCCCCCcEEEE
Q 032106 8 AKGILHALKDKGIDVAVASRSPSPD-------IANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLFF 80 (147)
Q Consensus 8 v~~~L~~L~~~g~~l~i~S~~~~~~-------~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~V 80 (147)
+..+++.+++.|.++.++.+..... .+..++. +....=|+. ..+.. ...+-+..+.+..+ .++..|
T Consensus 95 l~~~i~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~v~~-m~~e~G~~g-~~~~~--~~~~~i~~l~~~~~---~~~~iv 167 (215)
T PRK13813 95 LKAVVEAAAESGGKVFVVVEMSHPGALEFIQPHADKLAK-LAQEAGAFG-VVAPA--TRPERVRYIRSRLG---DELKII 167 (215)
T ss_pred HHHHHHHHHhcCCeEEEEEeCCCCCCCCCHHHHHHHHHH-HHHHhCCCe-EEECC--CcchhHHHHHHhcC---CCcEEE
Confidence 5577888888999998865333211 1111111 011111222 11211 22333334433333 233335
Q ss_pred eCCcc----cHHHHHHcCCeEEEECCCC-ChHHHHHHHHHHHH
Q 032106 81 DDEDR----NIDAVSKMGVTGILVGNGV-NLGALRQGLTKFSQ 118 (147)
Q Consensus 81 gDs~~----Di~~a~~~Gi~~i~v~~~~-~~~~~~~~l~~~~~ 118 (147)
+.+.+ ++..+.++|...+-+++.. ......+.++.+++
T Consensus 168 dgGI~~~g~~~~~~~~aGad~iV~Gr~I~~~~d~~~~~~~l~~ 210 (215)
T PRK13813 168 SPGIGAQGGKAADAIKAGADYVIVGRSIYNAADPREAAKAINE 210 (215)
T ss_pred eCCcCCCCCCHHHHHHcCCCEEEECcccCCCCCHHHHHHHHHH
Confidence 44544 3888999999999888763 23344555555554
No 397
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=40.79 E-value=33 Score=26.84 Aligned_cols=26 Identities=23% Similarity=0.552 Sum_probs=23.1
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEcC
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVASR 27 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S~ 27 (147)
|+-||+..++++.|++.|+++.+..+
T Consensus 66 ~~~FPdp~~mi~~L~~~G~k~~~~v~ 91 (317)
T cd06598 66 RKAFPDPAGMIADLAKKGVKTIVITE 91 (317)
T ss_pred cccCCCHHHHHHHHHHcCCcEEEEEc
Confidence 67899999999999999999988763
No 398
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=40.39 E-value=35 Score=26.76 Aligned_cols=25 Identities=16% Similarity=0.525 Sum_probs=21.8
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEc
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVAS 26 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S 26 (147)
++-||+..++++.|+++|+++.+..
T Consensus 62 ~~~FPdp~~mi~~L~~~G~kv~~~i 86 (319)
T cd06591 62 PERFPDPKAMVRELHEMNAELMISI 86 (319)
T ss_pred hhhCCCHHHHHHHHHHCCCEEEEEe
Confidence 5678999999999999999987754
No 399
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=40.21 E-value=1.4e+02 Score=25.49 Aligned_cols=67 Identities=10% Similarity=0.226 Sum_probs=41.6
Q ss_pred chhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccc-------cccceecCC--------------CCCcHHHH
Q 032106 5 YPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSM-------FVAKEIFSS--------------WSHKTDHF 63 (147)
Q Consensus 5 ~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~-------f~~~~~~~~--------------~kp~~~~~ 63 (147)
-+++.++.+.|.+.|+.+ +.|.+. ...|+..|+.-- |. +..+. ...+.+.
T Consensus 10 K~~iv~lAk~L~~lGfeI-iATgGT-----ak~L~e~GI~v~~Vsk~TgfP--Eil~GRVKTLHP~IhgGiLarr~~~~- 80 (511)
T TIGR00355 10 KTGIVEFAQGLVERGVEL-LSTGGT-----AKLLAEAGVPVTEVSDYTGFP--EMMDGRVKTLHPKVHGGILARRGDDD- 80 (511)
T ss_pred cccHHHHHHHHHHCCCEE-EEechH-----HHHHHHCCCeEEEeecccCCc--hhhCCccccCCchhhhhhhcCCCchH-
Confidence 367889999999999988 466443 356787887421 11 11110 1222233
Q ss_pred HHHHHHcCCCCCcEEEE
Q 032106 64 QRIHSRTGVPFNSMLFF 80 (147)
Q Consensus 64 ~~~~~~~~~~~~~~v~V 80 (147)
...++++|+.|=++|+|
T Consensus 81 ~~~l~~~~I~~IDlVvv 97 (511)
T TIGR00355 81 DADLEEHGIEPIDLVVV 97 (511)
T ss_pred HHHHHHcCCCceeEEEE
Confidence 66678889888777765
No 400
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=39.97 E-value=1.6e+02 Score=22.09 Aligned_cols=88 Identities=9% Similarity=0.158 Sum_probs=49.5
Q ss_pred chhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHHcCCCCCcEEEEeCCc
Q 032106 5 YPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLFFDDED 84 (147)
Q Consensus 5 ~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgDs~ 84 (147)
.+...++++.|.+.|+++.++.+..+...++.+.+.++-.... ... .+.+..-+..+++. .+.++-.||
T Consensus 139 ~~~~~~l~~~l~~~~~~ivl~g~~~e~~~~~~i~~~~~~~~~~---~~~--~~~~l~e~~~li~~-----~~l~I~~Ds- 207 (279)
T cd03789 139 AERFAALADRLLARGARVVLTGGPAERELAEEIAAALGGPRVV---NLA--GKTSLRELAALLAR-----ADLVVTNDS- 207 (279)
T ss_pred HHHHHHHHHHHHHCCCEEEEEechhhHHHHHHHHHhcCCCccc---cCc--CCCCHHHHHHHHHh-----CCEEEeeCC-
Confidence 4567788899988899988887655444544544443211111 111 12233334444443 333444444
Q ss_pred ccHHHHHHcCCeEEEECCC
Q 032106 85 RNIDAVSKMGVTGILVGNG 103 (147)
Q Consensus 85 ~Di~~a~~~Gi~~i~v~~~ 103 (147)
.-+..|..+|..++.+-..
T Consensus 208 g~~HlA~a~~~p~i~l~g~ 226 (279)
T cd03789 208 GPMHLAAALGTPTVALFGP 226 (279)
T ss_pred HHHHHHHHcCCCEEEEECC
Confidence 5566677889988877543
No 401
>COG1911 RPL30 Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]
Probab=39.96 E-value=74 Score=20.75 Aligned_cols=36 Identities=14% Similarity=0.097 Sum_probs=24.4
Q ss_pred chhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhc
Q 032106 5 YPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKL 41 (147)
Q Consensus 5 ~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~ 41 (147)
.=|..++|+.|+....++.|+.++. +...+.-++.+
T Consensus 21 ilG~k~tiK~lk~gkaKliiiAsN~-P~~~k~~ieyY 56 (100)
T COG1911 21 ILGSKRTIKSLKLGKAKLIIIASNC-PKELKEDIEYY 56 (100)
T ss_pred EEehHHHHHHHHcCCCcEEEEecCC-CHHHHHHHHHH
Confidence 4578899999988776666665333 55556666655
No 402
>COG0614 FepB ABC-type Fe3+-hydroxamate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=39.95 E-value=1.1e+02 Score=23.11 Aligned_cols=65 Identities=12% Similarity=0.311 Sum_probs=46.5
Q ss_pred CCCCCcEEEEeC-CcccHHHHHHcCCeEEEECCCCChHHHHHHHHHHHHhhccchhhHHHHHHhhcCC
Q 032106 71 GVPFNSMLFFDD-EDRNIDAVSKMGVTGILVGNGVNLGALRQGLTKFSQNWNTSQKNKQKWISKFSQK 137 (147)
Q Consensus 71 ~~~~~~~v~VgD-s~~Di~~a~~~Gi~~i~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 137 (147)
.+.|+=++...- ....+..-...|+.++.+... ....+.+.++...+-++ ..+.+.++++.|.++
T Consensus 113 ~lkPDlIi~~~~~~~~~~~~~~~~~~pvv~~~~~-~~~~~~~~i~~lg~~~g-~e~~A~~li~~~~~~ 178 (319)
T COG0614 113 ALKPDLIIASSSSQDDLIYKLLSLGAPVVVVDYG-SLDDIKEQIRLLGKALG-KEEKAEELIAEYDQR 178 (319)
T ss_pred hcCCCEEEEecccchhHHHHHHhcCCCEEEECCc-chhhHHHHHHHHHHHhC-cHHHHHHHHHHHHHH
Confidence 456665554443 233577788889999999887 66677777777777665 678888888877643
No 403
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=39.92 E-value=82 Score=24.60 Aligned_cols=50 Identities=12% Similarity=0.258 Sum_probs=41.4
Q ss_pred CCCCCcHHHHHHHHHHcCCCCCcEEEEeCCcccHHHHHH------cCCeEEEECCC
Q 032106 54 SSWSHKTDHFQRIHSRTGVPFNSMLFFDDEDRNIDAVSK------MGVTGILVGNG 103 (147)
Q Consensus 54 ~~~kp~~~~~~~~~~~~~~~~~~~v~VgDs~~Di~~a~~------~Gi~~i~v~~~ 103 (147)
...-|.++.|..++.++|+..+++|+|=|.....-+++. +|..-+.+..|
T Consensus 69 ~~~lp~~e~fa~~~~~~GI~~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdG 124 (285)
T COG2897 69 PHMLPSPEQFAKLLGELGIRNDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDG 124 (285)
T ss_pred CCCCCCHHHHHHHHHHcCCCCCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecC
Confidence 457789999999999999999999998888888777765 68877776554
No 404
>COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism]
Probab=39.80 E-value=77 Score=24.51 Aligned_cols=45 Identities=29% Similarity=0.376 Sum_probs=36.2
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCccccccc
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVA 49 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~ 49 (147)
.+++.+.+-+..|+..|.+.+|+=++. +. +...++++|+...|..
T Consensus 18 ~l~~~~~~di~lL~~~G~~~VvVHGgg-p~-I~~~l~~~gie~~f~~ 62 (265)
T COG0548 18 NLLEAFASDIALLKSVGIRPVVVHGGG-PQ-IDEMLAKLGIEPEFVK 62 (265)
T ss_pred hHHHHHHHHHHHHHHCCCcEEEEeCCc-hH-HHHHHHHcCCCCeeeC
Confidence 456777888899999999888887554 44 5889999999988765
No 405
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=39.68 E-value=1.3e+02 Score=20.88 Aligned_cols=114 Identities=20% Similarity=0.246 Sum_probs=65.3
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCccccccc-c--------------eecCCCCCcHHHHHHH
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVA-K--------------EIFSSWSHKTDHFQRI 66 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~-~--------------~~~~~~kp~~~~~~~~ 66 (147)
|...|-+.-+-.+|+++|+.+.|++|- .+-.+++-.+-+.|+-. . +.+..-.++-....++
T Consensus 15 P~qissaiYls~klkkkgf~v~Vaate----Aa~kLlevaD~ek~Y~de~vdlek~~ed~ie~~~~la~FvhNDag~~ya 90 (148)
T COG4081 15 PPQISSAIYLSHKLKKKGFDVTVAATE----AALKLLEVADPEKYYVDETVDLEKYLEDPIEGGILLAAFVHNDAGLQYA 90 (148)
T ss_pred CccchHHHHHHHHhhccCccEEEecCH----hhheeeeeeCcccchhhhhccHHHhhhhhHhhhheEEEEecCCcchhhh
Confidence 556677777779999999999999832 23345554444433311 0 0000011111111121
Q ss_pred --HHHcCCCCCcEEEEeCCc-ccHHHHHHcCCeEEEECCCCChHHHHHHHHHHHHh
Q 032106 67 --HSRTGVPFNSMLFFDDED-RNIDAVSKMGVTGILVGNGVNLGALRQGLTKFSQN 119 (147)
Q Consensus 67 --~~~~~~~~~~~v~VgDs~-~Di~~a~~~Gi~~i~v~~~~~~~~~~~~l~~~~~~ 119 (147)
++...-.+.-.+++|-.. .+++..-......+...+-+++..|...+.++.+.
T Consensus 91 vT~ka~sn~~~~aiVfgr~~~d~leet~~lda~v~~ar~~HnP~rlvnrid~il~~ 146 (148)
T COG4081 91 VTLKAVSNPDTYAIVFGREAEDRLEETGFLDAEVIGARAKHNPKRLVNRIDDILEA 146 (148)
T ss_pred hhhhhhcCCcceeeeecchhHHHHHHHhcCccceeeehhccCcHHHHHHHHHHHhc
Confidence 222222333355566555 46777777888888888888888888888877664
No 406
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=39.61 E-value=72 Score=22.83 Aligned_cols=46 Identities=17% Similarity=0.213 Sum_probs=34.7
Q ss_pred CchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCccccccc
Q 032106 4 LYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVA 49 (147)
Q Consensus 4 ~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~ 49 (147)
=.||-++-..+|+.+|+...||=+-+.+-+.....+.++.......
T Consensus 63 HvPGyi~~a~elksKGVd~iicvSVnDpFv~~aW~k~~g~~~~V~f 108 (171)
T KOG0541|consen 63 HVPGYIEKADELKSKGVDEIICVSVNDPFVMKAWAKSLGANDHVKF 108 (171)
T ss_pred cCchHHHHHHHHHhcCCcEEEEEecCcHHHHHHHHhhcCccceEEE
Confidence 3689999999999999887776656667777777777877655433
No 407
>COG2044 Predicted peroxiredoxins [General function prediction only]
Probab=39.50 E-value=49 Score=22.43 Aligned_cols=26 Identities=15% Similarity=0.413 Sum_probs=22.6
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCC
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRS 28 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~ 28 (147)
..+|-..++++.+++.|+++++|.-+
T Consensus 59 ~~~~~l~~~~~~a~e~GVk~yvCe~s 84 (120)
T COG2044 59 PNFPPLEELIKQAIEAGVKIYVCEQS 84 (120)
T ss_pred CCCCCHHHHHHHHHHcCCEEEEEcch
Confidence 35688999999999999999999933
No 408
>PRK14057 epimerase; Provisional
Probab=39.45 E-value=1.7e+02 Score=22.41 Aligned_cols=112 Identities=12% Similarity=0.196 Sum_probs=61.2
Q ss_pred hhHHHHHHHHHHCCC---------eEEEEcCCCC-hHHHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHH--c-C-
Q 032106 6 PHAKGILHALKDKGI---------DVAVASRSPS-PDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSR--T-G- 71 (147)
Q Consensus 6 pgv~~~L~~L~~~g~---------~l~i~S~~~~-~~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~--~-~- 71 (147)
+....+|+.+++.|. +.+|+=|... .+.++.++...++--.+...-.++..+=-+..+.++.+- + .
T Consensus 110 ~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~~vD~VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~ 189 (254)
T PRK14057 110 IHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGD 189 (254)
T ss_pred cCHHHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHHHhCCEEEEEEECCCCCchhccHHHHHHHHHHHHHHHh
Confidence 346788999999997 4666664432 333344444443322222212233344455555555431 1 1
Q ss_pred CCCCcEEEEeCCcc--cHHHHHHcCCeEEEECCCC-ChHHHHHHHHHHH
Q 032106 72 VPFNSMLFFDDEDR--NIDAVSKMGVTGILVGNGV-NLGALRQGLTKFS 117 (147)
Q Consensus 72 ~~~~~~v~VgDs~~--Di~~a~~~Gi~~i~v~~~~-~~~~~~~~l~~~~ 117 (147)
...+-.+.|+=+.+ .+..+.++|...+.++... ..+...+.++.++
T Consensus 190 ~~~~~~IeVDGGI~~~ti~~l~~aGad~~V~GSalF~~~d~~~~i~~l~ 238 (254)
T PRK14057 190 KREGKIIVIDGSLTQDQLPSLIAQGIDRVVSGSALFRDDRLVENTRSWR 238 (254)
T ss_pred cCCCceEEEECCCCHHHHHHHHHCCCCEEEEChHhhCCCCHHHHHHHHH
Confidence 12234577777776 5778888999988777542 2234455555554
No 409
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=39.44 E-value=55 Score=29.60 Aligned_cols=37 Identities=22% Similarity=0.235 Sum_probs=28.7
Q ss_pred CCchhHHHHHHHH-HHCCCeEEEEcCCCChHHHHHHHHh
Q 032106 3 SLYPHAKGILHAL-KDKGIDVAVASRSPSPDIANTFLEK 40 (147)
Q Consensus 3 ~~~pgv~~~L~~L-~~~g~~l~i~S~~~~~~~~~~~l~~ 40 (147)
.+-|++.++|+.| .+.|..++|+|+.. ...++.++..
T Consensus 616 ~p~~~~~~~L~~L~~d~g~~VaIvSGR~-~~~L~~~f~~ 653 (854)
T PLN02205 616 SPSSKSIDILNTLCRDKNNMVFIVSARS-RKTLADWFSP 653 (854)
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEeCCC-HHHHHHHhCC
Confidence 3557899999998 67799999999777 5555666643
No 410
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=39.40 E-value=29 Score=29.04 Aligned_cols=44 Identities=16% Similarity=0.227 Sum_probs=34.9
Q ss_pred CCCCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcc
Q 032106 1 MPSLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIK 44 (147)
Q Consensus 1 ~p~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~ 44 (147)
+|..+|.+-.+++.|+++.+.-.++||..-++.++.+-....+.
T Consensus 364 epi~yp~in~f~k~lH~k~issflvtnaq~pe~~rnvk~vtqly 407 (601)
T KOG1160|consen 364 EPIMYPEINPFAKLLHQKLISSFLVTNAQFPEDIRNVKPVTQLY 407 (601)
T ss_pred ccccchhhhHHHHHHHhccchHHhcccccChHHHhchhhhheeE
Confidence 48899999999999999999999999887666655544444443
No 411
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=39.00 E-value=58 Score=23.53 Aligned_cols=25 Identities=16% Similarity=0.186 Sum_probs=20.1
Q ss_pred chhHHHHHHHHHHCCCeEEEEcCCC
Q 032106 5 YPHAKGILHALKDKGIDVAVASRSP 29 (147)
Q Consensus 5 ~pgv~~~L~~L~~~g~~l~i~S~~~ 29 (147)
-+.+.++++.++++|.++..+|+..
T Consensus 124 t~~~i~~~~~ak~~g~~iI~iT~~~ 148 (192)
T PRK00414 124 SGNIIKAIEAARAKGMKVITLTGKD 148 (192)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3667888888888898888888655
No 412
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=38.81 E-value=44 Score=21.50 Aligned_cols=39 Identities=18% Similarity=0.418 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccc
Q 032106 7 HAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFV 48 (147)
Q Consensus 7 gv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~ 48 (147)
-..++.+.++.+|..+.++. .. +. +...+...|+...|.
T Consensus 68 ~L~~~~~~~~~~g~~~~l~~-~~-~~-v~~~l~~~~~~~~~~ 106 (117)
T PF01740_consen 68 ALVDIIKELRRRGVQLVLVG-LN-PD-VRRILERSGLIDFIP 106 (117)
T ss_dssp HHHHHHHHHHHTTCEEEEES-HH-HH-HHHHHHHTTGHHHSC
T ss_pred HHHHHHHHHHHCCCEEEEEE-CC-HH-HHHHHHHcCCChhcC
Confidence 34567788899999999988 43 34 467899999987773
No 413
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=38.71 E-value=1.7e+02 Score=23.22 Aligned_cols=44 Identities=18% Similarity=0.289 Sum_probs=30.3
Q ss_pred HHHHHHHcC-CCCCcEEEEeCCcc--c--HHHHHHcCCeEEEE-CCCCCh
Q 032106 63 FQRIHSRTG-VPFNSMLFFDDEDR--N--IDAVSKMGVTGILV-GNGVNL 106 (147)
Q Consensus 63 ~~~~~~~~~-~~~~~~v~VgDs~~--D--i~~a~~~Gi~~i~v-~~~~~~ 106 (147)
+..+.+++| +..-.++||||..+ + +.+|..+|+....+ +.++.+
T Consensus 141 l~Ti~E~~g~l~g~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p 190 (310)
T COG0078 141 LMTIKEHFGSLKGLKLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEP 190 (310)
T ss_pred HHHHHHhcCcccCcEEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCc
Confidence 345556676 67788999999944 1 56788899975544 455544
No 414
>COG4558 ChuT ABC-type hemin transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=38.70 E-value=1.5e+02 Score=23.33 Aligned_cols=100 Identities=13% Similarity=0.176 Sum_probs=60.7
Q ss_pred HHHHhcCcccccccceecCC------CCCcHHHHHHHHHH---cCCCCCcEEEEeCCcc--cHHHHHHcCCeEEEECCCC
Q 032106 36 TFLEKLNIKSMFVAKEIFSS------WSHKTDHFQRIHSR---TGVPFNSMLFFDDEDR--NIDAVSKMGVTGILVGNGV 104 (147)
Q Consensus 36 ~~l~~~gl~~~f~~~~~~~~------~kp~~~~~~~~~~~---~~~~~~~~v~VgDs~~--Di~~a~~~Gi~~i~v~~~~ 104 (147)
++.-.+|..+-.-..+..+. ..|+-. |.+.+.. +.+.|+-++--.+.-. =+.--+.+|+.++-+....
T Consensus 54 EiiyALGa~~~iVgrD~TS~~P~a~~klP~VG-y~r~LaaEGILslkPdlvi~~~~aGP~~vl~qLraagV~vv~v~~~~ 132 (300)
T COG4558 54 EIIYALGAEDRIVGRDSTSSYPAAALKLPDVG-YMRQLAAEGILSLKPDLVIGSEGAGPATVLDQLRAAGVPVVTVPEQP 132 (300)
T ss_pred HHHHHhCCCceeEEeecCCcCchHHhcCCccc-hhhhcCcccceecCCCEEEeecccCcHHHHHHHHHcCCcEEEcCCCC
Confidence 44555776655443222111 223333 3333333 3355654444444322 2777888999999999888
Q ss_pred ChHHHHHHHHHHHHhhccchhhHHHHHHhhcCC
Q 032106 105 NLGALRQGLTKFSQNWNTSQKNKQKWISKFSQK 137 (147)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 137 (147)
..+.+...+++...... .++..+...++|.|+
T Consensus 133 ~~~~i~~~Ir~vg~~lg-v~ekae~La~~~~~~ 164 (300)
T COG4558 133 TLDGIGTKIRQVGQALG-VPEKAEKLAEQYEQR 164 (300)
T ss_pred CHHHHHHHHHHHHHHhC-CcHHHHHHHHHHHHH
Confidence 88888888888777766 666677777777654
No 415
>PF01990 ATP-synt_F: ATP synthase (F/14-kDa) subunit; InterPro: IPR008218 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit F found in the V1 complex of V-ATPases (both eukaryotic and bacterial), as well as in the A1 complex of A-ATPases. Subunit F is a 16 kDa protein that is required for the assembly and activity of V-ATPase, and has a potential role in the differential targeting and regulation of the enzyme for specific organelles. This subunit is not necessary for the rotation of the ATPase V1 rotor, but it does promote catalysis []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 2D00_E 3A5C_P 3J0J_H 3A5D_H 2OV6_A 2QAI_B 3AON_B 2I4R_A.
Probab=38.44 E-value=92 Score=19.62 Aligned_cols=40 Identities=15% Similarity=0.312 Sum_probs=29.6
Q ss_pred EEEEeCCcccHHHHHHcCCeEEEECCCCChHHHHHHHHHHHHh
Q 032106 77 MLFFDDEDRNIDAVSKMGVTGILVGNGVNLGALRQGLTKFSQN 119 (147)
Q Consensus 77 ~v~VgDs~~Di~~a~~~Gi~~i~v~~~~~~~~~~~~l~~~~~~ 119 (147)
+.+|||. .-+.+.+-+|+..+.+. .+.++....+.++.+.
T Consensus 1 IavIGd~-~~v~gFrLaGv~~~~~~--~~~ee~~~~l~~l~~~ 40 (95)
T PF01990_consen 1 IAVIGDR-DTVLGFRLAGVEGVYVN--TDPEEAEEALKELLKD 40 (95)
T ss_dssp EEEEE-H-HHHHHHHHTTSEEEEES--HSHHHHHHHHHHHHHH
T ss_pred CEEEeCH-HHHHHHHHcCCCCccCC--CCHHHHHHHHHHHhcC
Confidence 4688998 55777888999999986 3456777778887754
No 416
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=38.41 E-value=18 Score=22.20 Aligned_cols=42 Identities=10% Similarity=0.029 Sum_probs=29.9
Q ss_pred ecCCCCCcHHHHHHHHHHcCCCCCcEEEEeCCcccHHHHHHc
Q 032106 52 IFSSWSHKTDHFQRIHSRTGVPFNSMLFFDDEDRNIDAVSKM 93 (147)
Q Consensus 52 ~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgDs~~Di~~a~~~ 93 (147)
.++..-|-...++.+++++.+++.++..|-+.-.+|..++.+
T Consensus 21 sVPE~apftaVlkfaAeeF~vp~~tsaiItndG~GInP~QTa 62 (76)
T PF03671_consen 21 SVPEEAPFTAVLKFAAEEFKVPPATSAIITNDGVGINPQQTA 62 (76)
T ss_dssp EEETTSBHHHHHHHHHHHTTS-SSSEEEEESSS-EE-TTSBH
T ss_pred ecCCCCchHHHHHHHHHHcCCCCceEEEEecCCcccccchhh
Confidence 344456889999999999999999999887766555544443
No 417
>cd06836 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases. This subfamily contains uncharacterized proteins with similarity to ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarbo
Probab=38.38 E-value=2.1e+02 Score=22.94 Aligned_cols=67 Identities=16% Similarity=0.231 Sum_probs=44.6
Q ss_pred EEEEcCCCChHHHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHHcCCCCCcEEEEeCCcc--cHHHHHHcCCeEEE
Q 032106 22 VAVASRSPSPDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLFFDDEDR--NIDAVSKMGVTGIL 99 (147)
Q Consensus 22 l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgDs~~--Di~~a~~~Gi~~i~ 99 (147)
.++=+|.+ +.++ .++...|.. ||. .+ ..+ ++. +...|+++++++|-|-... +++.|.+.|+ .+-
T Consensus 32 yAvKaN~~-~~il-~~l~~~G~g--~Dv---aS----~~E-l~~-al~~G~~~~~Ii~~gp~K~~~~L~~ai~~gv-~i~ 97 (379)
T cd06836 32 FAVKANPL-VPVL-RLLAEAGAG--AEV---AS----PGE-LEL-ALAAGFPPERIVFDSPAKTRAELREALELGV-AIN 97 (379)
T ss_pred EEEecCCC-HHHH-HHHHHcCCc--EEE---cC----HHH-HHH-HHHcCCChhhEEEeCCCCCHHHHHHHHHCCC-EEE
Confidence 46666665 6665 456677753 543 11 122 333 3467999999999999876 7999999999 465
Q ss_pred ECC
Q 032106 100 VGN 102 (147)
Q Consensus 100 v~~ 102 (147)
+..
T Consensus 98 iDS 100 (379)
T cd06836 98 IDN 100 (379)
T ss_pred ECC
Confidence 544
No 418
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=38.33 E-value=61 Score=24.27 Aligned_cols=83 Identities=14% Similarity=0.222 Sum_probs=50.9
Q ss_pred CchhHH-HHHHHHHHCCCeEEEEcCCCChH-----HHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHHcCCCCCcE
Q 032106 4 LYPHAK-GILHALKDKGIDVAVASRSPSPD-----IANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSM 77 (147)
Q Consensus 4 ~~pgv~-~~L~~L~~~g~~l~i~S~~~~~~-----~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 77 (147)
+.|++. ++.+.+++.|++..|+.... +. .++..++.+|+.-.|+.. .+.-.+.....+...++.+|.+-=++
T Consensus 60 lHPDl~~~l~~~~~e~g~kavIvp~~~-~~~g~~~~lk~~~e~~gi~~~~P~~-~CsL~~~~~p~i~~F~~~fGkP~~ei 137 (217)
T PF02593_consen 60 LHPDLTYELPEIAKEAGVKAVIVPSES-PKPGLRRQLKKQLEEFGIEVEFPKP-FCSLEENGNPQIDEFAEYFGKPKVEI 137 (217)
T ss_pred cCchhHHHHHHHHHHcCCCEEEEecCC-CccchHHHHHHHHHhcCceeecCcc-ccccCCCCChhHHHHHHHhCCceEEE
Confidence 455555 55566777999999888554 55 567889999987666653 11112245566677777799765554
Q ss_pred EEEeCCcccHH
Q 032106 78 LFFDDEDRNID 88 (147)
Q Consensus 78 v~VgDs~~Di~ 88 (147)
.+=+|...|++
T Consensus 138 ~v~~~~I~~V~ 148 (217)
T PF02593_consen 138 EVENGKIKDVK 148 (217)
T ss_pred EecCCcEEEEE
Confidence 43333333443
No 419
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=38.19 E-value=2.2e+02 Score=23.09 Aligned_cols=92 Identities=16% Similarity=0.233 Sum_probs=52.7
Q ss_pred HHHHHHHHHHCCCeEEEEcCC-CChHHHHHHHHhcCcccccccc----eecCCCCCcHHHHHHHHHHcCCCCCcEEEEeC
Q 032106 8 AKGILHALKDKGIDVAVASRS-PSPDIANTFLEKLNIKSMFVAK----EIFSSWSHKTDHFQRIHSRTGVPFNSMLFFDD 82 (147)
Q Consensus 8 v~~~L~~L~~~g~~l~i~S~~-~~~~~~~~~l~~~gl~~~f~~~----~~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgD 82 (147)
+.+.++.+++.+..+.+-.+. +..+.+ ..+...|.+-..-.. ........++..+...+++.+++ |+.|+
T Consensus 120 ~~~iv~~~~~~~V~v~vr~~~~~~~e~a-~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~ip----VIaG~ 194 (368)
T PRK08649 120 ITERIAEIRDAGVIVAVSLSPQRAQELA-PTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYELDVP----VIVGG 194 (368)
T ss_pred HHHHHHHHHhCeEEEEEecCCcCHHHHH-HHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHCCCC----EEEeC
Confidence 456677788777666664422 223333 345566765332211 11112233567788888877653 44577
Q ss_pred Ccc--cHHHHHHcCCeEEEECCCC
Q 032106 83 EDR--NIDAVSKMGVTGILVGNGV 104 (147)
Q Consensus 83 s~~--Di~~a~~~Gi~~i~v~~~~ 104 (147)
-.. +...+.++|...+.+..+.
T Consensus 195 V~t~e~A~~l~~aGAD~V~VG~G~ 218 (368)
T PRK08649 195 CVTYTTALHLMRTGAAGVLVGIGP 218 (368)
T ss_pred CCCHHHHHHHHHcCCCEEEECCCC
Confidence 444 5666667899999887654
No 420
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=38.11 E-value=1.4e+02 Score=20.79 Aligned_cols=40 Identities=20% Similarity=0.321 Sum_probs=29.6
Q ss_pred HHHHHHHHHHCCCeEEEEcC-CCChHHHHHHHHhcCccccc
Q 032106 8 AKGILHALKDKGIDVAVASR-SPSPDIANTFLEKLNIKSMF 47 (147)
Q Consensus 8 v~~~L~~L~~~g~~l~i~S~-~~~~~~~~~~l~~~gl~~~f 47 (147)
..++++.+.+.|.++.|+|. ++.+..++.+...++-.-|-
T Consensus 65 ~~evi~~I~~~G~PviVAtDV~p~P~~V~Kia~~f~A~ly~ 105 (138)
T PF04312_consen 65 RSEVIEWISEYGKPVIVATDVSPPPETVKKIARSFNAVLYT 105 (138)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCCcHHHHHHHHHhCCcccC
Confidence 45788899999999999992 23367777877777765443
No 421
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=37.90 E-value=1.7e+02 Score=22.50 Aligned_cols=47 Identities=11% Similarity=0.160 Sum_probs=32.7
Q ss_pred CcHHHHHHHHHHcCCCCCcEEEEeCCcccHHHHHHc---CCeEEEECCCC
Q 032106 58 HKTDHFQRIHSRTGVPFNSMLFFDDEDRNIDAVSKM---GVTGILVGNGV 104 (147)
Q Consensus 58 p~~~~~~~~~~~~~~~~~~~v~VgDs~~Di~~a~~~---Gi~~i~v~~~~ 104 (147)
.+...+-.-+..+|++-.+...|||...+|..+-+. ....+.++-|.
T Consensus 21 tNa~~la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r~D~vI~tGGL 70 (255)
T COG1058 21 TNAAFLADELTELGVDLARITTVGDNPDRIVEALREASERADVVITTGGL 70 (255)
T ss_pred chHHHHHHHHHhcCceEEEEEecCCCHHHHHHHHHHHHhCCCEEEECCCc
Confidence 356677777888888888888889988876655442 25566665543
No 422
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=37.77 E-value=34 Score=26.62 Aligned_cols=25 Identities=32% Similarity=0.686 Sum_probs=22.2
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEc
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVAS 26 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S 26 (147)
+.-||+..++++.|++.|+++.+..
T Consensus 66 ~~~FPdp~~mi~~l~~~G~k~~l~i 90 (303)
T cd06592 66 PTKFPDPKGMIDQLHDLGFRVTLWV 90 (303)
T ss_pred hhhCCCHHHHHHHHHHCCCeEEEEE
Confidence 4678999999999999999998865
No 423
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=37.77 E-value=42 Score=26.53 Aligned_cols=26 Identities=15% Similarity=0.304 Sum_probs=22.9
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEcC
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVASR 27 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S~ 27 (147)
++-||+...+++.|++.|+++.+..+
T Consensus 60 ~~~FPdp~~mi~~L~~~G~k~~~~~~ 85 (339)
T cd06603 60 KKKFPDPEKMQEKLASKGRKLVTIVD 85 (339)
T ss_pred cccCCCHHHHHHHHHHCCCEEEEEec
Confidence 56799999999999999999988664
No 424
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=37.73 E-value=64 Score=22.52 Aligned_cols=23 Identities=9% Similarity=0.177 Sum_probs=16.6
Q ss_pred CcHHHHHHHHHHcCCCCCcEEEEe
Q 032106 58 HKTDHFQRIHSRTGVPFNSMLFFD 81 (147)
Q Consensus 58 p~~~~~~~~~~~~~~~~~~~v~Vg 81 (147)
+..+.-..+++ .|++++++...|
T Consensus 144 ase~~~~~l~~-~Gi~~~~I~vtG 166 (169)
T PF06925_consen 144 ASEEVKEELIE-RGIPPERIHVTG 166 (169)
T ss_pred CCHHHHHHHHH-cCCChhHEEEeC
Confidence 45666666655 899999887765
No 425
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=37.47 E-value=1.6e+02 Score=21.23 Aligned_cols=72 Identities=15% Similarity=0.173 Sum_probs=36.7
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccc-----cccc-------------------eecCCCCCcHHHHH
Q 032106 9 KGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSM-----FVAK-------------------EIFSSWSHKTDHFQ 64 (147)
Q Consensus 9 ~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~-----f~~~-------------------~~~~~~kp~~~~~~ 64 (147)
..+.+.+...|.++.+++.++ ..+..+.+..++... +... ++ .+.-+...+.
T Consensus 36 ~~~~~~~~~~g~~v~~~apT~--~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDE--asmv~~~~~~ 111 (196)
T PF13604_consen 36 KALAEALEAAGKRVIGLAPTN--KAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLIVDE--ASMVDSRQLA 111 (196)
T ss_dssp HHHHHHHHHTT--EEEEESSH--HHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEEESS--GGG-BHHHHH
T ss_pred HHHHHHHHhCCCeEEEECCcH--HHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEEEec--ccccCHHHHH
Confidence 345667778899999998554 344566666554321 0000 11 1334555666
Q ss_pred HHHHHcCCCCCcEEEEeCCc
Q 032106 65 RIHSRTGVPFNSMLFFDDED 84 (147)
Q Consensus 65 ~~~~~~~~~~~~~v~VgDs~ 84 (147)
.+++...-....+++|||..
T Consensus 112 ~ll~~~~~~~~klilvGD~~ 131 (196)
T PF13604_consen 112 RLLRLAKKSGAKLILVGDPN 131 (196)
T ss_dssp HHHHHS-T-T-EEEEEE-TT
T ss_pred HHHHHHHhcCCEEEEECCcc
Confidence 66666655556788888854
No 426
>PF13034 DUF3895: Protein of unknown function (DUF3895)
Probab=37.40 E-value=51 Score=20.57 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=23.9
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCC
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVASRSP 29 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S~~~ 29 (147)
|.+||.|--.|+.|...|+...+-+...
T Consensus 44 pkiY~~Vc~yLe~L~~eg~l~~i~~~~~ 71 (78)
T PF13034_consen 44 PKIYPYVCNYLEYLVKEGKLSFIENDGT 71 (78)
T ss_pred ceeHHHHHHHHHHHHHCCeEEEEecCcc
Confidence 8899999999999999999777777443
No 427
>PRK09482 flap endonuclease-like protein; Provisional
Probab=37.32 E-value=4.8 Score=30.84 Aligned_cols=32 Identities=19% Similarity=0.131 Sum_probs=22.8
Q ss_pred HHHHHHcCCCCCc----EEEEeCCcccHHHHHHcCC
Q 032106 64 QRIHSRTGVPFNS----MLFFDDEDRNIDAVSKMGV 95 (147)
Q Consensus 64 ~~~~~~~~~~~~~----~v~VgDs~~Di~~a~~~Gi 95 (147)
..+.+++|+.|.+ ..++||+-.+|.+....|-
T Consensus 157 ~~v~~~~Gv~P~q~~D~~aL~GD~sDnIpGVpGIG~ 192 (256)
T PRK09482 157 PFIEQEFGVEPQQLPDYWGLAGISSSKIPGVAGIGP 192 (256)
T ss_pred HHHHHHhCCCHHHHHHHHHHhCCCccCCCCCCCcCh
Confidence 4456789998866 4589999999885544443
No 428
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=37.13 E-value=43 Score=25.93 Aligned_cols=26 Identities=35% Similarity=0.700 Sum_probs=22.9
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEcC
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVASR 27 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S~ 27 (147)
+.-||+..++++.|++.|+++.+..+
T Consensus 62 ~~~FPd~~~~i~~l~~~G~~~~~~~~ 87 (308)
T cd06593 62 PDRFPDPEGMLSRLKEKGFKVCLWIN 87 (308)
T ss_pred cccCCCHHHHHHHHHHCCCeEEEEec
Confidence 56789999999999999999988653
No 429
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=37.12 E-value=58 Score=24.23 Aligned_cols=26 Identities=15% Similarity=0.103 Sum_probs=21.6
Q ss_pred CchhHHHHHHHHHHC-CCeEEEEcCCC
Q 032106 4 LYPHAKGILHALKDK-GIDVAVASRSP 29 (147)
Q Consensus 4 ~~pgv~~~L~~L~~~-g~~l~i~S~~~ 29 (147)
+.|++.++|+.|.+. +..++|+|+..
T Consensus 26 ~~~~~~~~L~~L~~~~~~~v~ivSGR~ 52 (244)
T TIGR00685 26 VSDRLLTILQKLAARPHNAIWIISGRK 52 (244)
T ss_pred CCHHHHHHHHHHHhCCCCeEEEEECCC
Confidence 568999999999776 56789999775
No 430
>PRK13938 phosphoheptose isomerase; Provisional
Probab=36.82 E-value=66 Score=23.50 Aligned_cols=25 Identities=8% Similarity=0.102 Sum_probs=20.7
Q ss_pred chhHHHHHHHHHHCCCeEEEEcCCC
Q 032106 5 YPHAKGILHALKDKGIDVAVASRSP 29 (147)
Q Consensus 5 ~pgv~~~L~~L~~~g~~l~i~S~~~ 29 (147)
-+++.++++.++++|.++..+|+..
T Consensus 126 t~~vi~a~~~Ak~~G~~vI~iT~~~ 150 (196)
T PRK13938 126 SMSVLRAAKTARELGVTVVAMTGES 150 (196)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 3577888999999999999999655
No 431
>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis. G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.
Probab=36.81 E-value=57 Score=25.28 Aligned_cols=76 Identities=11% Similarity=0.150 Sum_probs=44.0
Q ss_pred hhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCc-cccc----ccceecCC--------------CCCcHHHHHHH
Q 032106 6 PHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNI-KSMF----VAKEIFSS--------------WSHKTDHFQRI 66 (147)
Q Consensus 6 pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl-~~~f----~~~~~~~~--------------~kp~~~~~~~~ 66 (147)
..+.+.|..|++.|+++.+||++. ...-...+...+. ..=| ..+..... .---...|+..
T Consensus 34 ~~l~~~i~~l~~~g~~vilVssGA-v~~G~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~qa~aa~gq~~L~~~y~~~ 112 (284)
T cd04256 34 ASIVEQVSELQSQGREVILVTSGA-VAFGKQRLRHEILLSSSMRQTLKSGQLKDMPQMELDGRACAAVGQSGLMALYEAM 112 (284)
T ss_pred HHHHHHHHHHHHCCCEEEEEeeCc-HHhChHHhhhccccccchhhhcccccccCCcchhHHHHHHHHcccHHHHHHHHHH
Confidence 346667788889999999888776 5555555543321 0000 00000000 11124467888
Q ss_pred HHHcCCCCCcEEEEeC
Q 032106 67 HSRTGVPFNSMLFFDD 82 (147)
Q Consensus 67 ~~~~~~~~~~~v~VgD 82 (147)
+..+++.+.+++.-.+
T Consensus 113 f~~~~~~~~q~llt~~ 128 (284)
T cd04256 113 FTQYGITVAQVLVTKP 128 (284)
T ss_pred HHHcCCcHHHeeeecc
Confidence 8889999999865544
No 432
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=36.76 E-value=1.6e+02 Score=23.82 Aligned_cols=107 Identities=13% Similarity=0.239 Sum_probs=60.8
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCCChH----HHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHH-c---CCC
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVASRSPSPD----IANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSR-T---GVP 73 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~----~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~-~---~~~ 73 (147)
|.+......+|..++++|+++.+-+++.++. .++.+.+..|+. |....+.+. .. ...+...+.+ . .+.
T Consensus 54 ~~~~~~L~~~L~~~~~~gIkvI~NaGg~np~~~a~~v~eia~e~Gl~--lkvA~V~gD-d~-~~~v~~~~~~g~~~~~l~ 129 (362)
T PF07287_consen 54 PDFVRDLRPLLPAAAEKGIKVITNAGGLNPAGCADIVREIARELGLS--LKVAVVYGD-DL-KDEVKELLAEGETIRPLD 129 (362)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHHHHHhcCCC--eeEEEEECc-cc-hHhHHHHHhCCCCCccCC
Confidence 3455677888899999999999988766554 345566778886 443211111 12 2222222221 1 111
Q ss_pred C--------CcEEEEeCC--cccHHHHHHcCCeEEEECCCCChHHHHHH
Q 032106 74 F--------NSMLFFDDE--DRNIDAVSKMGVTGILVGNGVNLGALRQG 112 (147)
Q Consensus 74 ~--------~~~v~VgDs--~~Di~~a~~~Gi~~i~v~~~~~~~~~~~~ 112 (147)
. .+++.+==. ...|..|.+.|...|..++-.+.......
T Consensus 130 ~~~~l~~~~~~~~~a~aylGa~pI~~AL~~GADIVI~GR~~D~Al~~a~ 178 (362)
T PF07287_consen 130 TGPPLSEWDDRIVSANAYLGAEPIVEALEAGADIVITGRVADPALFAAP 178 (362)
T ss_pred CCCCcchhccccceEEEecChHHHHHHHHcCCCEEEeCcccchHHHHhH
Confidence 1 112211111 22577888889999999888877655543
No 433
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=36.27 E-value=1.8e+02 Score=21.69 Aligned_cols=101 Identities=12% Similarity=0.022 Sum_probs=53.3
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEc------CCCChHHHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHHcCCCC-
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVAS------RSPSPDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPF- 74 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S------~~~~~~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~- 74 (147)
.++-+...++.+.|++.|+.+..+- ... .......+..++ -|+.+ +-.++..-+.+...+...+.++
T Consensus 9 TRp~~~~~~l~~~l~~~G~~~~~~P~i~i~p~~~-~~~~~~~l~~l~---~~d~i--ifTS~naV~~~~~~l~~~~~~~~ 82 (255)
T PRK05752 9 TRPAEECAALAASLAEAGIFSSSLPLLAIEPLPE-TPEQRALLLELD---RYCAV--IVVSKPAARLGLELLDRYWPQPP 82 (255)
T ss_pred CCcHHHHHHHHHHHHHcCCCEEEcCcEEEeeCCC-CHHHHHHHhcCC---CCCEE--EEECHHHHHHHHHHHHhhCCCCc
Confidence 3566788888899999998877752 111 111233344332 23432 2222223334444444444332
Q ss_pred -CcEEEEeCCcccHHHHHHcCCeEEEECCCCChHHHH
Q 032106 75 -NSMLFFDDEDRNIDAVSKMGVTGILVGNGVNLGALR 110 (147)
Q Consensus 75 -~~~v~VgDs~~Di~~a~~~Gi~~i~v~~~~~~~~~~ 110 (147)
-.++.||+...+.. ++.|+....+...++.+.+.
T Consensus 83 ~~~~~aVG~~Ta~al--~~~G~~~~~~p~~~~se~Ll 117 (255)
T PRK05752 83 QQPWFSVGAATAAIL--QDYGLDVSYPEQGDDSEALL 117 (255)
T ss_pred CCEEEEECHHHHHHH--HHcCCCcccCCCCCCcHHHH
Confidence 36778888776543 34577766655555555444
No 434
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=35.96 E-value=2.9e+02 Score=23.89 Aligned_cols=96 Identities=13% Similarity=0.199 Sum_probs=58.3
Q ss_pred CCCchhHHHHHHHH---HHCCCeEEEEcCCCCh-----HHHHHHHHhcCccc--ccccceecCCCCCcHHHHHHHHHHcC
Q 032106 2 PSLYPHAKGILHAL---KDKGIDVAVASRSPSP-----DIANTFLEKLNIKS--MFVAKEIFSSWSHKTDHFQRIHSRTG 71 (147)
Q Consensus 2 p~~~pgv~~~L~~L---~~~g~~l~i~S~~~~~-----~~~~~~l~~~gl~~--~f~~~~~~~~~kp~~~~~~~~~~~~~ 71 (147)
|..++++.++.+.+ ..++-++.|++..+-- .+....++++|... ||-.-......-.+...++.+.+. |
T Consensus 49 P~~l~~m~~a~~ri~~ai~~~e~I~I~gDyD~DGitstail~~~L~~~g~~~~~~~IP~R~~eGYGl~~~~i~~~~~~-~ 127 (575)
T PRK11070 49 WQQLSGIEKAVELLYNALREGTRIIVVGDFDADGATSTALSVLALRSLGCSNVDYLVPNRFEDGYGLSPEVVDQAHAR-G 127 (575)
T ss_pred hHHhhCHHHHHHHHHHHHHCCCEEEEEEecCccHHHHHHHHHHHHHHcCCCceEEEeCCCCcCCCCCCHHHHHHHHhc-C
Confidence 56678888888777 4467899999855421 23345667777631 221101111123466777777653 3
Q ss_pred CCCCcEEEEeCCcccHHHH---HHcCCeEEEE
Q 032106 72 VPFNSMLFFDDEDRNIDAV---SKMGVTGILV 100 (147)
Q Consensus 72 ~~~~~~v~VgDs~~Di~~a---~~~Gi~~i~v 100 (147)
. +=+|.||-+..++++. ++.|+.+|-.
T Consensus 128 ~--~LiItvD~Gi~~~e~i~~a~~~gidvIVt 157 (575)
T PRK11070 128 A--QLIVTVDNGISSHAGVAHAHALGIPVLVT 157 (575)
T ss_pred C--CEEEEEcCCcCCHHHHHHHHHCCCCEEEE
Confidence 3 4578888888765554 8899987754
No 435
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=35.53 E-value=45 Score=26.16 Aligned_cols=25 Identities=16% Similarity=0.493 Sum_probs=22.1
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEc
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVAS 26 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S 26 (147)
+..||+..++++.|++.|+++.+..
T Consensus 60 ~~~FPdp~~~i~~l~~~g~k~~~~~ 84 (317)
T cd06600 60 PYRFPEPKKLIDELHKRNVKLVTIV 84 (317)
T ss_pred hhcCCCHHHHHHHHHHCCCEEEEEe
Confidence 5679999999999999999988765
No 436
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=35.34 E-value=1.8e+02 Score=21.30 Aligned_cols=34 Identities=15% Similarity=0.280 Sum_probs=25.0
Q ss_pred chhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcc
Q 032106 5 YPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIK 44 (147)
Q Consensus 5 ~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~ 44 (147)
-+++.++.+.|.+.|+.+. +|.+. ...|+..|+.
T Consensus 10 K~~l~~lAk~L~~lGf~I~-AT~GT-----Ak~L~e~GI~ 43 (187)
T cd01421 10 KTGLVEFAKELVELGVEIL-STGGT-----AKFLKEAGIP 43 (187)
T ss_pred cccHHHHHHHHHHCCCEEE-EccHH-----HHHHHHcCCe
Confidence 3678899999999999884 66342 3557777764
No 437
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=35.22 E-value=53 Score=22.58 Aligned_cols=11 Identities=18% Similarity=0.362 Sum_probs=8.7
Q ss_pred cEEEEeCCccc
Q 032106 76 SMLFFDDEDRN 86 (147)
Q Consensus 76 ~~v~VgDs~~D 86 (147)
+++|||||...
T Consensus 2 ~iv~~GdS~t~ 12 (174)
T cd01841 2 NIVFIGDSLFE 12 (174)
T ss_pred CEEEEcchhhh
Confidence 57899999773
No 438
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=35.16 E-value=1.2e+02 Score=19.44 Aligned_cols=41 Identities=5% Similarity=0.083 Sum_probs=28.2
Q ss_pred cEEEEeCCcccHHHHHHcCCeEEEECCCCChHHHHHHHHHHHHh
Q 032106 76 SMLFFDDEDRNIDAVSKMGVTGILVGNGVNLGALRQGLTKFSQN 119 (147)
Q Consensus 76 ~~v~VgDs~~Di~~a~~~Gi~~i~v~~~~~~~~~~~~l~~~~~~ 119 (147)
.+.+||| ..-+.+.+-+|+..+.+.. +.++..+.++++..+
T Consensus 2 kIaVIGD-~dtv~GFrLaGi~~~~~~~--~~ee~~~~l~~l~~~ 42 (100)
T PRK02228 2 EIAVIGS-PEFTTGFRLAGIRKVYEVP--DDEKLDEAVEEVLED 42 (100)
T ss_pred EEEEEeC-HHHHHHHHHcCCceEEeeC--CHHHHHHHHHHHhhC
Confidence 4688999 6668888999998665332 235677777776433
No 439
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=35.05 E-value=2.4e+02 Score=22.66 Aligned_cols=103 Identities=12% Similarity=0.112 Sum_probs=64.2
Q ss_pred chhHHHHHHHHHHCCCeEEEEcCCCChHHH-H------HHHHhcCcccccccceecCCCCCcHHHHHHHHHHc-CCCC-C
Q 032106 5 YPHAKGILHALKDKGIDVAVASRSPSPDIA-N------TFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRT-GVPF-N 75 (147)
Q Consensus 5 ~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~-~------~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~-~~~~-~ 75 (147)
.+++.+.++.++++|.++++++|.....-- + ..+..+|.+...- -++.++..+.+.. +++. -
T Consensus 48 ~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~GvDaviv---------~Dpg~i~l~~e~~p~l~ih~ 118 (347)
T COG0826 48 VEDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVELGVDAVIV---------ADPGLIMLARERGPDLPIHV 118 (347)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHHcCCCEEEE---------cCHHHHHHHHHhCCCCcEEE
Confidence 456889999999999999999987632110 0 1122333332211 3677777776654 2322 1
Q ss_pred cEEEEeCCcccHHHHHHcCCeEEEECCCCChHHHHHHHHHH
Q 032106 76 SMLFFDDEDRNIDAVSKMGVTGILVGNGVNLGALRQGLTKF 116 (147)
Q Consensus 76 ~~v~VgDs~~Di~~a~~~Gi~~i~v~~~~~~~~~~~~l~~~ 116 (147)
.+-+-=.+...+...++.|+.-+.+++....+++.+..+.-
T Consensus 119 S~q~~v~N~~~~~f~~~~G~~rvVl~rEls~~ei~~i~~~~ 159 (347)
T COG0826 119 STQANVTNAETAKFWKELGAKRVVLPRELSLEEIKEIKEQT 159 (347)
T ss_pred eeeEecCCHHHHHHHHHcCCEEEEeCccCCHHHHHHHHHhC
Confidence 12222345557888889998888888888777776655543
No 440
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=34.92 E-value=67 Score=25.38 Aligned_cols=27 Identities=11% Similarity=0.014 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHHCCCeEEEEcCCCChH
Q 032106 6 PHAKGILHALKDKGIDVAVASRSPSPD 32 (147)
Q Consensus 6 pgv~~~L~~L~~~g~~l~i~S~~~~~~ 32 (147)
+++.++++.++++|.++..+||.....
T Consensus 106 ~e~i~al~~ak~~Ga~~I~IT~~~~S~ 132 (340)
T PRK11382 106 EEVIKALELGRACGALTAAFTKRADSP 132 (340)
T ss_pred HHHHHHHHHHHHcCCeEEEEECCCCCh
Confidence 578899999999999999999776433
No 441
>PRK10060 RNase II stability modulator; Provisional
Probab=34.83 E-value=3e+02 Score=23.82 Aligned_cols=109 Identities=9% Similarity=0.085 Sum_probs=55.8
Q ss_pred chhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccc-ccc--ceecCCCCCcHHHH---HHHHHHcCCCCCcEE
Q 032106 5 YPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSM-FVA--KEIFSSWSHKTDHF---QRIHSRTGVPFNSML 78 (147)
Q Consensus 5 ~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~-f~~--~~~~~~~kp~~~~~---~~~~~~~~~~~~~~v 78 (147)
.+.+.+.|..|++.|++++|=-=+..... -..+..+.++.. +|. +..+.....+.... -.+++.+|+. +|
T Consensus 540 ~~~~~~~l~~L~~~G~~ialDdfGtg~ss-l~~L~~l~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~---vi 615 (663)
T PRK10060 540 EELALSVIQQFSQLGAQVHLDDFGTGYSS-LSQLARFPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQ---VI 615 (663)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCchhh-HHHHHhCCCCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCCc---EE
Confidence 35577889999999999999652221222 245666665321 121 11222222233333 3444556653 22
Q ss_pred EEe-CCcccHHHHHHcCCeEE---EECCCCChHHHHHHHHHHH
Q 032106 79 FFD-DEDRNIDAVSKMGVTGI---LVGNGVNLGALRQGLTKFS 117 (147)
Q Consensus 79 ~Vg-Ds~~Di~~a~~~Gi~~i---~v~~~~~~~~~~~~l~~~~ 117 (147)
.=| .+...+..++.+|+..+ ++..+.+..++...+..+.
T Consensus 616 AeGVEt~~q~~~l~~~G~d~~QGy~~~~P~~~~~~~~~l~~~~ 658 (663)
T PRK10060 616 AEGVETAKEDAFLTKNGVNERQGFLFAKPMPAVAFERWYKRYL 658 (663)
T ss_pred EecCCCHHHHHHHHHcCCCEEecCccCCCCCHHHHHHHHHhhh
Confidence 222 23336777888888533 4555555555555444443
No 442
>PRK05429 gamma-glutamyl kinase; Provisional
Probab=34.80 E-value=38 Score=27.33 Aligned_cols=82 Identities=15% Similarity=0.169 Sum_probs=0.0
Q ss_pred CCCCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccceecCCC-----CCcHHHHHHHHHHcCCCCC
Q 032106 1 MPSLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFSSW-----SHKTDHFQRIHSRTGVPFN 75 (147)
Q Consensus 1 ~p~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~~~~~~-----kp~~~~~~~~~~~~~~~~~ 75 (147)
.+..+..+.+.|..|++.|+++.|++++. +...+..+++...+......... .--...|..++.++|+...
T Consensus 28 ~~~~i~~la~~I~~l~~~g~~vViV~sGa----i~~g~~~l~l~~~~~~~~~~qa~aavGq~~L~~~~~~~l~~~gi~~~ 103 (372)
T PRK05429 28 DRARIAELARQIAALRAAGHEVVLVSSGA----VAAGRERLGLPERPKTLAEKQAAAAVGQSRLMQAYEELFARYGITVA 103 (372)
T ss_pred CHHHHHHHHHHHHHHHHCCCeEEEEcccH----hhhhHhhcCCCCCCCchHHHHHHHHHhHHHHHHHHHHHHHHCCCCEE
Q ss_pred cEEEEeCCccc
Q 032106 76 SMLFFDDEDRN 86 (147)
Q Consensus 76 ~~v~VgDs~~D 86 (147)
+++.-.+...+
T Consensus 104 qil~t~~d~~~ 114 (372)
T PRK05429 104 QILLTRDDLED 114 (372)
T ss_pred EEEeehhHhhh
No 443
>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex. This domain is often found associated with the C2H2 type Zn-finger (IPR007087 from INTERPRO).; GO: 0008270 zinc ion binding, 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent
Probab=34.64 E-value=1.8e+02 Score=21.27 Aligned_cols=59 Identities=20% Similarity=0.231 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHHcCCCC
Q 032106 7 HAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPF 74 (147)
Q Consensus 7 gv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~ 74 (147)
++.++++.|++.++++-|++=+.+..+++.+.+..| ..|.-. -+...|..++...=.+|
T Consensus 118 di~~ti~~l~~~~IrvsvI~laaEv~I~k~i~~~T~-G~y~V~--------lde~H~~~lL~~~~~PP 176 (193)
T PF04056_consen 118 DIHETIESLKKENIRVSVISLAAEVYICKKICKETG-GTYGVI--------LDEDHFKELLMEHVPPP 176 (193)
T ss_pred hHHHHHHHHHHcCCEEEEEEEhHHHHHHHHHHHhhC-CEEEEe--------cCHHHHHHHHHhhCCCC
Confidence 456889999999999999996666777777777776 333211 24577777777765554
No 444
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=34.61 E-value=74 Score=28.51 Aligned_cols=39 Identities=36% Similarity=0.376 Sum_probs=30.2
Q ss_pred CCchhHHHHHHHHHHC-CCeEEEEcCCCChHHHHHHHHhcC
Q 032106 3 SLYPHAKGILHALKDK-GIDVAVASRSPSPDIANTFLEKLN 42 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~-g~~l~i~S~~~~~~~~~~~l~~~g 42 (147)
.+.|++.++|+.|.+. +..|+|+|+.. ...++.++...+
T Consensus 532 ~p~~~l~~~L~~L~~d~~~~V~IvSGR~-~~~L~~~~~~~~ 571 (797)
T PLN03063 532 GLHPELKETLKALCSDPKTTVVVLSRSG-KDILDKNFGEYN 571 (797)
T ss_pred CCCHHHHHHHHHHHcCCCCEEEEEeCCC-HHHHHHHhCCCC
Confidence 3678999999999765 68899999887 666677666433
No 445
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=34.52 E-value=56 Score=25.72 Aligned_cols=88 Identities=15% Similarity=0.211 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHHCCCeEEEEcCCCChHHHHH---------HHHhcCcccccc----cceecCCCCCcHHHHHHHHHHcCC
Q 032106 6 PHAKGILHALKDKGIDVAVASRSPSPDIANT---------FLEKLNIKSMFV----AKEIFSSWSHKTDHFQRIHSRTGV 72 (147)
Q Consensus 6 pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~---------~l~~~gl~~~f~----~~~~~~~~kp~~~~~~~~~~~~~~ 72 (147)
|=+..+.+.|+++|++++|+|.++-... +. -.+..|=..+.- .. .+.-.+......+.++++++
T Consensus 45 P~v~~La~~l~~~G~~~~IlSRGYg~~~-~~~~~~v~~~~~~~~~GDEp~lla~~~~~-~V~V~~dR~~a~~~~~~~~~- 121 (311)
T TIGR00682 45 PVVVWLAELLKDRGLRVGVLSRGYGSKT-KKYTLVGSKKHTASEVGDEPVLLAKYLHA-TVVASKDRKDAILLILEQLD- 121 (311)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCC-CCCeeeeCCCCChHHcCcHHHHhhhhcCC-cEEEeChHHHHHHHHHhcCC-
Confidence 4567788899999999999997652210 00 000111000000 00 00011223344555555443
Q ss_pred CCCcEEEEeCCcccHHHHHHcCCeEE
Q 032106 73 PFNSMLFFDDEDRNIDAVSKMGVTGI 98 (147)
Q Consensus 73 ~~~~~v~VgDs~~Di~~a~~~Gi~~i 98 (147)
.+++..+|+.-+...++...+-.+
T Consensus 122 --~dviilDDGfQh~~l~rD~~Ivlv 145 (311)
T TIGR00682 122 --PDVIILDDGLQHRKLHRDVEIVVV 145 (311)
T ss_pred --CCEEEECCCCcCccccCCeEEEEE
Confidence 568999999988777666555444
No 446
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=34.36 E-value=43 Score=27.38 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=24.1
Q ss_pred HHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCccccc
Q 032106 8 AKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMF 47 (147)
Q Consensus 8 v~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f 47 (147)
+..-|-.|-++|+.|+|||....+...+---+..||.+.|
T Consensus 171 vi~~ii~LL~~gv~VgIVTAAGY~~a~kY~~RL~GLL~a~ 210 (408)
T PF06437_consen 171 VIPRIIKLLRRGVKVGIVTAAGYPGAEKYEERLHGLLDAF 210 (408)
T ss_pred HHHHHHHHHhcCCeEEEEeCCCCCChHHHHHHHHHHHHHH
Confidence 3444445557889999999777666433333334555444
No 447
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=34.29 E-value=2.1e+02 Score=21.86 Aligned_cols=83 Identities=6% Similarity=0.023 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHHCCCeEEEEcCCC-ChHHHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHHcCCCCCcEEEEeCCc
Q 032106 6 PHAKGILHALKDKGIDVAVASRSP-SPDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLFFDDED 84 (147)
Q Consensus 6 pgv~~~L~~L~~~g~~l~i~S~~~-~~~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgDs~ 84 (147)
+...++++.|.+.|+.+.++.++. +...++.+.+.++-. ... .+-+-.-+-.+++. . -+|||-..
T Consensus 198 e~~~~l~~~l~~~~~~~vl~~g~~~e~~~~~~i~~~~~~~------~l~--g~~sL~el~ali~~-----a-~l~I~~DS 263 (319)
T TIGR02193 198 ERWRELARLLLARGLQIVLPWGNDAEKQRAERIAEALPGA------VVL--PKMSLAEVAALLAG-----A-DAVVGVDT 263 (319)
T ss_pred HHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHhhCCCC------eec--CCCCHHHHHHHHHc-----C-CEEEeCCC
Confidence 356678888877788877764333 223334444332211 111 12222223333332 2 36777777
Q ss_pred ccHHHHHHcCCeEEEECC
Q 032106 85 RNIDAVSKMGVTGILVGN 102 (147)
Q Consensus 85 ~Di~~a~~~Gi~~i~v~~ 102 (147)
.-++.|..+|+.++.+-.
T Consensus 264 gp~HlAaa~g~P~i~lfg 281 (319)
T TIGR02193 264 GLTHLAAALDKPTVTLYG 281 (319)
T ss_pred hHHHHHHHcCCCEEEEEC
Confidence 778888899999988743
No 448
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=34.02 E-value=1.1e+02 Score=23.65 Aligned_cols=44 Identities=23% Similarity=0.211 Sum_probs=34.1
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccc
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFV 48 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~ 48 (147)
.+.+...+-|..|+..|.++.++-++. ......++++|+...|.
T Consensus 39 ~l~~~~~~di~~l~~~g~~~VlVHGgg--~~i~~~~~~~g~~~~~~ 82 (284)
T CHL00202 39 ILKADIIKDILFLSCIGLKIVVVHGGG--PEINFWLKQLNISPKFW 82 (284)
T ss_pred chHHHHHHHHHHHHHCCCcEEEEeCCc--HHHHHHHHHCCCCCEeE
Confidence 345567788888999999999999664 44578899999887663
No 449
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=33.97 E-value=69 Score=16.14 Aligned_cols=22 Identities=18% Similarity=0.395 Sum_probs=15.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHH
Q 032106 18 KGIDVAVASRSPSPDIANTFLE 39 (147)
Q Consensus 18 ~g~~l~i~S~~~~~~~~~~~l~ 39 (147)
....++|-||+..+..+..+.+
T Consensus 3 g~LqI~ISTnG~sP~la~~iR~ 24 (30)
T PF14824_consen 3 GPLQIAISTNGKSPRLARLIRK 24 (30)
T ss_dssp TTEEEEEEESSS-HHHHHHHHH
T ss_pred CCeEEEEECCCCChHHHHHHHH
Confidence 3577899999987777655443
No 450
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=33.93 E-value=47 Score=30.64 Aligned_cols=92 Identities=11% Similarity=0.143 Sum_probs=54.2
Q ss_pred HHHHHHHHCCC---eEEEEcCCCChHHHHHHHHhcCcccccccceecCCCCCcHHHHHHH-H----HHcC-CCCCcEEEE
Q 032106 10 GILHALKDKGI---DVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRI-H----SRTG-VPFNSMLFF 80 (147)
Q Consensus 10 ~~L~~L~~~g~---~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~-~----~~~~-~~~~~~v~V 80 (147)
+.|+.+|..|+ .++-+++.. ...++.+.+.+++...|..++.+..--|....|.+. . .... -+...++++
T Consensus 482 ~~~~~~k~~g~~d~~~a~~~~~~-~~~~~~~~~~~~~~~~~k~vd~~a~e~~~~~~~~y~~~~~~~~~~~~~~~~kvlvl 560 (1050)
T TIGR01369 482 ELLRRAKKLGFSDAQIARLIGVT-EAEVRKLRKELGIMPVYKRVDTCAAEFEAQTPYLYSTYEGERDDVPFTDKKKVLVL 560 (1050)
T ss_pred HHHHHHHHcCCCHHHHHHHhCcC-HHHHHHHHHHCCCeeEEEeecCCCCcccCCCCeeEecCCCCCCcccCCCCceEEEe
Confidence 56677776664 344455555 455677788888877666554443321211111111 0 0000 123579999
Q ss_pred eCCccc--------------HHHHHHcCCeEEEECC
Q 032106 81 DDEDRN--------------IDAVSKMGVTGILVGN 102 (147)
Q Consensus 81 gDs~~D--------------i~~a~~~Gi~~i~v~~ 102 (147)
|-+.+. +.+++++|+.++.+..
T Consensus 561 G~G~~rig~~~efd~~~v~~i~al~~~G~~vI~v~~ 596 (1050)
T TIGR01369 561 GSGPNRIGQGVEFDYCCVHAVLALRELGYETIMINY 596 (1050)
T ss_pred cCcccccccccccchHHHHHHHHHHhCCCEEEEEec
Confidence 998764 6888999999999965
No 451
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=33.69 E-value=1e+02 Score=23.50 Aligned_cols=37 Identities=22% Similarity=0.406 Sum_probs=29.4
Q ss_pred HHHHHHHHHCCC-eEEEEcCCCChHHHHHHHHhcCccc
Q 032106 9 KGILHALKDKGI-DVAVASRSPSPDIANTFLEKLNIKS 45 (147)
Q Consensus 9 ~~~L~~L~~~g~-~l~i~S~~~~~~~~~~~l~~~gl~~ 45 (147)
-..|+.|.+.|+ .++||+|+.....++..+.++++..
T Consensus 35 ~~~i~~L~~~gi~e~vvV~~g~~~~lve~~l~~~~~~~ 72 (239)
T COG1213 35 YRTIENLAKAGITEFVVVTNGYRADLVEEFLKKYPFNA 72 (239)
T ss_pred HHHHHHHHHcCCceEEEEeccchHHHHHHHHhcCCcce
Confidence 456788888886 6788887877888899999888643
No 452
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=33.64 E-value=1.4e+02 Score=19.84 Aligned_cols=38 Identities=16% Similarity=0.157 Sum_probs=21.1
Q ss_pred chhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCc
Q 032106 5 YPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNI 43 (147)
Q Consensus 5 ~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl 43 (147)
+|...++.+.+++.|+.+..+|... ...++..++..++
T Consensus 48 ~~~l~~~~~~~~~~~v~vi~vs~d~-~~~~~~~~~~~~~ 85 (149)
T cd03018 48 LCALRDSLELFEAAGAEVLGISVDS-PFSLRAWAEENGL 85 (149)
T ss_pred HHHHHHHHHHHHhCCCEEEEecCCC-HHHHHHHHHhcCC
Confidence 3445555566666666666666333 4445555555554
No 453
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=33.48 E-value=1.6e+02 Score=20.20 Aligned_cols=17 Identities=18% Similarity=0.231 Sum_probs=7.9
Q ss_pred HHHHHHHHCCCeEEEEc
Q 032106 10 GILHALKDKGIDVAVAS 26 (147)
Q Consensus 10 ~~L~~L~~~g~~l~i~S 26 (147)
++++..++.+..+..+|
T Consensus 43 ~~v~aa~~~~adiVglS 59 (134)
T TIGR01501 43 EFIKAAIETKADAILVS 59 (134)
T ss_pred HHHHHHHHcCCCEEEEe
Confidence 44444444444444444
No 454
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=33.46 E-value=43 Score=25.61 Aligned_cols=78 Identities=14% Similarity=0.132 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCccccc---ccceecCCCCCcHHHHHHHHHHcCCCCCcEEEEeC
Q 032106 6 PHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMF---VAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLFFDD 82 (147)
Q Consensus 6 pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f---~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgD 82 (147)
..+.+.+..++..|+++.+||++. .......+.......-+ +..-.++ .---...|..+++.+|+...+++.-.|
T Consensus 34 ~~~~~~I~~~~~~g~~vvlV~Sga-~~~g~~~l~~~~~~~~~~~~~a~aa~G-q~~l~~~~~~~~~~~g~~~~q~llT~~ 111 (266)
T PRK12314 34 EQLVFVISDLMNKGKEVILVSSGA-IGAGLTKLKLDKRPTSLAEKQALAAVG-QPELMSLYSKFFAEYGIVVAQILLTRD 111 (266)
T ss_pred HHHHHHHHHHHHCCCeEEEEeeCc-ccccceeeccccCCCCHHHHHHHHHHh-HHHHHHHHHHHHHHcCCeEEEEEEecc
Confidence 455667777888999999987553 22222222222111001 0000000 012355788888999999888877666
Q ss_pred Ccc
Q 032106 83 EDR 85 (147)
Q Consensus 83 s~~ 85 (147)
...
T Consensus 112 ~~~ 114 (266)
T PRK12314 112 DFD 114 (266)
T ss_pred ccc
Confidence 543
No 455
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=33.45 E-value=1.9e+02 Score=21.16 Aligned_cols=61 Identities=13% Similarity=0.200 Sum_probs=33.3
Q ss_pred CCCCcEEEEeCCcc---cHHHHHH-cCCeEEEECCCCChHHHHHHHHHHHHhhccchhhHHHHHHhh
Q 032106 72 VPFNSMLFFDDEDR---NIDAVSK-MGVTGILVGNGVNLGALRQGLTKFSQNWNTSQKNKQKWISKF 134 (147)
Q Consensus 72 ~~~~~~v~VgDs~~---Di~~a~~-~Gi~~i~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 134 (147)
+.|+=++ ..+... +++...+ +|+.++.+......+.+.+.+..+.+.+. ..+.+.+.++.|
T Consensus 73 l~PDLIi-~~~~~~~~~~~~~l~~~~gipvv~~~~~~~~~~~~~~i~~lg~~~g-~~~~a~~~~~~~ 137 (262)
T cd01147 73 LKPDVVI-DVGSDDPTSIADDLQKKTGIPVVVLDGGDSLEDTPEQIRLLGKVLG-KEERAEELISFI 137 (262)
T ss_pred cCCCEEE-EecCCccchhHHHHHHhhCCCEEEEecCCchHhHHHHHHHHHHHhC-CHHHHHHHHHHH
Confidence 4565444 333322 3565655 89998888654335566666665555554 344444444444
No 456
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=33.39 E-value=1.1e+02 Score=23.50 Aligned_cols=44 Identities=20% Similarity=0.333 Sum_probs=32.0
Q ss_pred CCCCchhHHHHHHHHHHC-CCeEEEEcCC--CChHHHHHHHHhcCccc
Q 032106 1 MPSLYPHAKGILHALKDK-GIDVAVASRS--PSPDIANTFLEKLNIKS 45 (147)
Q Consensus 1 ~p~~~pgv~~~L~~L~~~-g~~l~i~S~~--~~~~~~~~~l~~~gl~~ 45 (147)
+|.+.+...++++..++. ++++.+.||+ ..... ...+...|+..
T Consensus 75 EPll~~d~~ei~~~~~~~~~~~~~~~TnG~~~~~~~-~~~l~~~g~~~ 121 (347)
T COG0535 75 EPLLRPDLLEIVEYARKKGGIRVSLSTNGTLLTEEV-LEKLKEAGLDY 121 (347)
T ss_pred CccccccHHHHHHHHhhcCCeEEEEeCCCccCCHHH-HHHHHhcCCcE
Confidence 477889999999999966 8999999987 32233 34455566643
No 457
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=33.33 E-value=2.3e+02 Score=22.47 Aligned_cols=57 Identities=18% Similarity=0.296 Sum_probs=31.0
Q ss_pred HHHHHHHCCCeEEEEcCCCChH--HHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHHcC
Q 032106 11 ILHALKDKGIDVAVASRSPSPD--IANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTG 71 (147)
Q Consensus 11 ~L~~L~~~g~~l~i~S~~~~~~--~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~ 71 (147)
.-++|.++|+.++++|.+.++. ..+++.+..++.-.+-. .++ .+++. .|+.+.+.+.
T Consensus 65 yA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~~~~vev~~i~-~Df--t~~~~-~ye~i~~~l~ 123 (312)
T KOG1014|consen 65 YARELAKRGFNVVLISRTQEKLEAVAKEIEEKYKVEVRIIA-IDF--TKGDE-VYEKLLEKLA 123 (312)
T ss_pred HHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHHhCcEEEEEE-Eec--CCCch-hHHHHHHHhc
Confidence 3477888999999999554211 23334555553222211 233 33554 6666666553
No 458
>TIGR00623 sula cell division inhibitor SulA. All proteins in this family for which the functions are known are cell division inhibitors. In E. coli, SulA is one of the SOS regulated genes.
Probab=33.31 E-value=93 Score=22.36 Aligned_cols=41 Identities=10% Similarity=0.241 Sum_probs=33.3
Q ss_pred HHHHHHHHcCCCCCcEEEEe-----CCcccHHHHHHcCCeEEEECC
Q 032106 62 HFQRIHSRTGVPFNSMLFFD-----DEDRNIDAVSKMGVTGILVGN 102 (147)
Q Consensus 62 ~~~~~~~~~~~~~~~~v~Vg-----Ds~~Di~~a~~~Gi~~i~v~~ 102 (147)
.+...+...|++.++++.|- |+.+-++-|-+.|-....+.|
T Consensus 72 ~~~~~L~~~Gl~l~rvlli~~~~~~d~lwa~EQaLrSG~c~aVL~W 117 (168)
T TIGR00623 72 LSKEWVQSSGLPLTKVMQISQLSPCNTVESMIRALRTGNYSVVIGW 117 (168)
T ss_pred cCHHHHHHcCCChhHEEEEecCCchhHHHHHHHHHHhCCCcEEEec
Confidence 66677888999999999983 566667778888998888888
No 459
>KOG0205 consensus Plasma membrane H+-transporting ATPase [Inorganic ion transport and metabolism]
Probab=33.30 E-value=1.4e+02 Score=26.54 Aligned_cols=90 Identities=13% Similarity=0.113 Sum_probs=60.6
Q ss_pred chhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCccc-ccccc-----------------------eecCCCCCcH
Q 032106 5 YPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKS-MFVAK-----------------------EIFSSWSHKT 60 (147)
Q Consensus 5 ~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~-~f~~~-----------------------~~~~~~kp~~ 60 (147)
....-+.+......|..+-++| ++...+.+..-+++|+.- .+... +.+. --.|
T Consensus 494 rhdsa~tirral~lGv~Vkmit-gdqlaI~keTgrrlgmgtnmypss~llG~~~~~~~~~~~v~elie~adgfA--gVfp 570 (942)
T KOG0205|consen 494 RHDSAETIRRALNLGVNVKMIT-GDQLAIAKETGRRLGMGTNMYPSSALLGLGKDGSMPGSPVDELIEKADGFA--GVFP 570 (942)
T ss_pred ccchHHHHHHHHhccceeeeec-chHHHHHHhhhhhhccccCcCCchhhccCCCCCCCCCCcHHHHhhhccCcc--ccCH
Confidence 4456677877778999999999 554777777777777632 22110 1111 1233
Q ss_pred HHHHHHHHHcCCCCCcEEEEeCCcccHHHHHHcCCeE
Q 032106 61 DHFQRIHSRTGVPFNSMLFFDDEDRNIDAVSKMGVTG 97 (147)
Q Consensus 61 ~~~~~~~~~~~~~~~~~v~VgDs~~Di~~a~~~Gi~~ 97 (147)
+.-..+.+.+.-...-|-|.||..+|..+.+++.+..
T Consensus 571 ehKy~iV~~Lq~r~hi~gmtgdgvndapaLKkAdigi 607 (942)
T KOG0205|consen 571 EHKYEIVKILQERKHIVGMTGDGVNDAPALKKADIGI 607 (942)
T ss_pred HHHHHHHHHHhhcCceecccCCCcccchhhcccccce
Confidence 4444556666666677999999999999999987653
No 460
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=33.28 E-value=45 Score=18.39 Aligned_cols=14 Identities=29% Similarity=0.532 Sum_probs=6.7
Q ss_pred hHHHHHHHHHHCCC
Q 032106 7 HAKGILHALKDKGI 20 (147)
Q Consensus 7 gv~~~L~~L~~~g~ 20 (147)
.+..+|+.|++.|+
T Consensus 20 ~~~~~l~~l~~~g~ 33 (48)
T PF11848_consen 20 EVKPLLDRLQQAGF 33 (48)
T ss_pred hHHHHHHHHHHcCc
Confidence 44444555544444
No 461
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=33.26 E-value=1.2e+02 Score=22.65 Aligned_cols=38 Identities=11% Similarity=0.256 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcc
Q 032106 7 HAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIK 44 (147)
Q Consensus 7 gv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~ 44 (147)
.+.++.+.+++.++++.+.........++.+.+..|+.
T Consensus 187 ~l~~l~~~ik~~~v~~i~~e~~~~~~~~~~la~~~g~~ 224 (256)
T PF01297_consen 187 DLAELIKLIKENKVKCIFTEPQFSSKLAEALAKETGVK 224 (256)
T ss_dssp HHHHHHHHHHHTT-SEEEEETTS-THHHHHHHHCCT-E
T ss_pred HHHHHHHHhhhcCCcEEEecCCCChHHHHHHHHHcCCc
Confidence 45667788899999888887666567777777888865
No 462
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=33.26 E-value=2.4e+02 Score=22.09 Aligned_cols=87 Identities=14% Similarity=0.203 Sum_probs=50.3
Q ss_pred HHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccc-eecCC--CCCcHHHHHHHHHHcCCCCCcEEEEeCCcc-
Q 032106 10 GILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAK-EIFSS--WSHKTDHFQRIHSRTGVPFNSMLFFDDEDR- 85 (147)
Q Consensus 10 ~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~-~~~~~--~kp~~~~~~~~~~~~~~~~~~~v~VgDs~~- 85 (147)
+.++.+++.|+++.... .+ ...+ ..+...|.+...-.. +.-+. ..+....+..+.+..+++ ++.-|+=.+
T Consensus 100 ~~i~~lk~~g~~v~~~v-~s-~~~a-~~a~~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iP---viaaGGI~~~ 173 (307)
T TIGR03151 100 KYIPRLKENGVKVIPVV-AS-VALA-KRMEKAGADAVIAEGMESGGHIGELTTMALVPQVVDAVSIP---VIAAGGIADG 173 (307)
T ss_pred HHHHHHHHcCCEEEEEc-CC-HHHH-HHHHHcCCCEEEEECcccCCCCCCCcHHHHHHHHHHHhCCC---EEEECCCCCH
Confidence 46677777776654332 22 3333 335556655432111 11111 234566777777766643 677776543
Q ss_pred -cHHHHHHcCCeEEEECC
Q 032106 86 -NIDAVSKMGVTGILVGN 102 (147)
Q Consensus 86 -Di~~a~~~Gi~~i~v~~ 102 (147)
|+.+|..+|...++++.
T Consensus 174 ~~~~~al~~GA~gV~iGt 191 (307)
T TIGR03151 174 RGMAAAFALGAEAVQMGT 191 (307)
T ss_pred HHHHHHHHcCCCEeecch
Confidence 78888889999998875
No 463
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=33.03 E-value=1.4e+02 Score=19.22 Aligned_cols=34 Identities=18% Similarity=0.238 Sum_probs=24.0
Q ss_pred HHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcc
Q 032106 10 GILHALKDKGIDVAVASRSPSPDIANTFLEKLNIK 44 (147)
Q Consensus 10 ~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~ 44 (147)
.....|.+.|+++++++-++ ...++..++..++.
T Consensus 4 ~~~~~l~~~gv~lv~I~~g~-~~~~~~f~~~~~~p 37 (115)
T PF13911_consen 4 RRKPELEAAGVKLVVIGCGS-PEGIEKFCELTGFP 37 (115)
T ss_pred HhHHHHHHcCCeEEEEEcCC-HHHHHHHHhccCCC
Confidence 44677888999999999666 53367777655443
No 464
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=32.80 E-value=1.8e+02 Score=20.61 Aligned_cols=92 Identities=17% Similarity=0.231 Sum_probs=50.2
Q ss_pred HHHHHHHHHHCCCeEEE--EcCCCChHHHHHHHHhcCccc--ccccceecCC-CCCcHHHHHHHHHHcCCCCCcEEEE-e
Q 032106 8 AKGILHALKDKGIDVAV--ASRSPSPDIANTFLEKLNIKS--MFVAKEIFSS-WSHKTDHFQRIHSRTGVPFNSMLFF-D 81 (147)
Q Consensus 8 v~~~L~~L~~~g~~l~i--~S~~~~~~~~~~~l~~~gl~~--~f~~~~~~~~-~kp~~~~~~~~~~~~~~~~~~~v~V-g 81 (147)
..++++.+++.|.++.+ ++..+ +..... ....+.+- ++........ .....+.+..+.+..+ -.++.. |
T Consensus 92 ~~~~i~~~~~~g~~~~v~~~~~~t-~~e~~~-~~~~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~i~~~GG 166 (202)
T cd04726 92 IKKAVKAAKKYGKEVQVDLIGVED-PEKRAK-LLKLGVDIVILHRGIDAQAAGGWWPEDDLKKVKKLLG---VKVAVAGG 166 (202)
T ss_pred HHHHHHHHHHcCCeEEEEEeCCCC-HHHHHH-HHHCCCCEEEEcCcccccccCCCCCHHHHHHHHhhcC---CCEEEECC
Confidence 56788999999999987 45333 443333 33344432 1111100011 2334555555554322 223333 3
Q ss_pred CCcccHHHHHHcCCeEEEECCCC
Q 032106 82 DEDRNIDAVSKMGVTGILVGNGV 104 (147)
Q Consensus 82 Ds~~Di~~a~~~Gi~~i~v~~~~ 104 (147)
=+..++..+.++|...+.+++..
T Consensus 167 I~~~~i~~~~~~Gad~vvvGsai 189 (202)
T cd04726 167 ITPDTLPEFKKAGADIVIVGRAI 189 (202)
T ss_pred cCHHHHHHHHhcCCCEEEEeehh
Confidence 34458999999999999988754
No 465
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=32.77 E-value=71 Score=24.15 Aligned_cols=27 Identities=7% Similarity=-0.107 Sum_probs=21.9
Q ss_pred chhHHHHHHHHHHCCCeEEEEcCCCCh
Q 032106 5 YPHAKGILHALKDKGIDVAVASRSPSP 31 (147)
Q Consensus 5 ~pgv~~~L~~L~~~g~~l~i~S~~~~~ 31 (147)
.+.+.++++.++++|.++..+|+....
T Consensus 188 ~~~~~~~~~~ak~~ga~iI~IT~~~~s 214 (278)
T PRK11557 188 RRELNLAADEALRVGAKVLAITGFTPN 214 (278)
T ss_pred CHHHHHHHHHHHHcCCCEEEEcCCCCC
Confidence 467788899999999999999976533
No 466
>PHA03050 glutaredoxin; Provisional
Probab=32.57 E-value=1.4e+02 Score=19.39 Aligned_cols=84 Identities=13% Similarity=0.152 Sum_probs=47.1
Q ss_pred HHHHHHHHHCCCeEEEEc--CCCChHHHHHHHHhcCccc-ccccceecCCCCCcHHHHHHHHHHcCCCCCcEEEEeCCcc
Q 032106 9 KGILHALKDKGIDVAVAS--RSPSPDIANTFLEKLNIKS-MFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLFFDDEDR 85 (147)
Q Consensus 9 ~~~L~~L~~~g~~l~i~S--~~~~~~~~~~~l~~~gl~~-~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgDs~~ 85 (147)
.+.++.+.+. .++.|.| .++.=..++.+|+.+++.. -|..+ .+....+.......+.+..|..-=-.||||+...
T Consensus 3 ~~~v~~~i~~-~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i-~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~~i 80 (108)
T PHA03050 3 EEFVQQRLAN-NKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIV-DIKEFKPENELRDYFEQITGGRTVPRIFFGKTSI 80 (108)
T ss_pred HHHHHHHhcc-CCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEE-ECCCCCCCHHHHHHHHHHcCCCCcCEEEECCEEE
Confidence 4566666544 4455555 4443334567888888742 13332 2222334566666666666765455889998643
Q ss_pred ----cHHHHHHcC
Q 032106 86 ----NIDAVSKMG 94 (147)
Q Consensus 86 ----Di~~a~~~G 94 (147)
|+.+.++.|
T Consensus 81 GG~ddl~~l~~~g 93 (108)
T PHA03050 81 GGYSDLLEIDNMD 93 (108)
T ss_pred eChHHHHHHHHcC
Confidence 455555443
No 467
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=32.56 E-value=2.5e+02 Score=22.11 Aligned_cols=28 Identities=4% Similarity=0.051 Sum_probs=15.4
Q ss_pred CcHHHHHHHHHHcCCCCCcEEEEeCCcc
Q 032106 58 HKTDHFQRIHSRTGVPFNSMLFFDDEDR 85 (147)
Q Consensus 58 p~~~~~~~~~~~~~~~~~~~v~VgDs~~ 85 (147)
|.-.-.+...+++.-.--.+++|||...
T Consensus 97 P~V~k~~~~v~~~~~~Gy~vvi~G~~~H 124 (298)
T PRK01045 97 PLVTKVHKEVARMSREGYEIILIGHKGH 124 (298)
T ss_pred ccchHHHHHHHHHHhCCCEEEEEeCCCC
Confidence 3344444444544445556788887544
No 468
>PLN02389 biotin synthase
Probab=32.34 E-value=1.7e+02 Score=23.72 Aligned_cols=44 Identities=7% Similarity=0.143 Sum_probs=28.2
Q ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCccccc
Q 032106 3 SLYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMF 47 (147)
Q Consensus 3 ~~~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f 47 (147)
..++.+.++++.+++.+..+. +|++......-..|+..|++.|-
T Consensus 150 ~~~e~i~eiir~ik~~~l~i~-~s~G~l~~E~l~~LkeAGld~~~ 193 (379)
T PLN02389 150 TNFNQILEYVKEIRGMGMEVC-CTLGMLEKEQAAQLKEAGLTAYN 193 (379)
T ss_pred hHHHHHHHHHHHHhcCCcEEE-ECCCCCCHHHHHHHHHcCCCEEE
Confidence 346778888888887777654 45444333334557777887653
No 469
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=32.25 E-value=48 Score=18.25 Aligned_cols=31 Identities=16% Similarity=0.192 Sum_probs=21.4
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChHHHHHHHHh
Q 032106 9 KGILHALKDKGIDVAVASRSPSPDIANTFLEK 40 (147)
Q Consensus 9 ~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~ 40 (147)
.++.+.|++.|++.+-+|.+. +.+....|..
T Consensus 9 ~eL~~~L~~~G~~~gPIt~sT-R~vy~kkL~~ 39 (44)
T smart00540 9 AELRAELKQYGLPPGPITDTT-RKLYEKKLRK 39 (44)
T ss_pred HHHHHHHHHcCCCCCCcCcch-HHHHHHHHHH
Confidence 356788888899888888666 5554444443
No 470
>TIGR01027 proB glutamate 5-kinase. Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family.
Probab=31.74 E-value=46 Score=26.73 Aligned_cols=74 Identities=14% Similarity=0.165 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccc------eecCCCCCcHHHHHHHHHHcCCCCCcEEE
Q 032106 6 PHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAK------EIFSSWSHKTDHFQRIHSRTGVPFNSMLF 79 (147)
Q Consensus 6 pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~------~~~~~~kp~~~~~~~~~~~~~~~~~~~v~ 79 (147)
..+.+.|..|++.|+++.||+++. .. ..+..+++...+... ..++. .--...|...+..+|+...+++.
T Consensus 25 ~~la~~I~~l~~~g~~vvlV~sG~-~~---~g~~~lg~~~~~~~l~~~qa~aa~Gq-~~l~~~~~~~l~~~Gi~~aqill 99 (363)
T TIGR01027 25 AELVEQVAALHAAGHEVVIVSSGA-IA---AGFEALGLPERPKTLAEKQALAAVGQ-VRLMQLYEQLFSQYGIKVAQILL 99 (363)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCcH-Hh---cCccccCCCCCccchHHHHHHHHhCh-HHHHHHHHHHHHHcCCeEEEEEE
Confidence 345577788889999999999764 21 224445554322210 00000 01233556677777777666665
Q ss_pred EeCCc
Q 032106 80 FDDED 84 (147)
Q Consensus 80 VgDs~ 84 (147)
..+..
T Consensus 100 t~~d~ 104 (363)
T TIGR01027 100 TRADF 104 (363)
T ss_pred eccch
Confidence 55533
No 471
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=31.64 E-value=98 Score=28.41 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=30.0
Q ss_pred CchhHHHHHHHHHHC-CCeEEEEcCCCChHHHHHHHHhcC
Q 032106 4 LYPHAKGILHALKDK-GIDVAVASRSPSPDIANTFLEKLN 42 (147)
Q Consensus 4 ~~pgv~~~L~~L~~~-g~~l~i~S~~~~~~~~~~~l~~~g 42 (147)
+.|++.++|+.|.+. +..|+|+|+.. ...++.++...+
T Consensus 623 p~p~l~~~L~~L~~dp~n~VaIVSGR~-~~~Le~~fg~~~ 661 (934)
T PLN03064 623 LHPELKEPLRALCSDPKTTIVVLSGSD-RSVLDENFGEFD 661 (934)
T ss_pred CCHHHHHHHHHHHhCCCCeEEEEeCCC-HHHHHHHhCCCC
Confidence 568899999999875 68899999887 666677776544
No 472
>PRK15482 transcriptional regulator MurR; Provisional
Probab=31.58 E-value=82 Score=24.02 Aligned_cols=27 Identities=11% Similarity=0.007 Sum_probs=22.4
Q ss_pred CchhHHHHHHHHHHCCCeEEEEcCCCC
Q 032106 4 LYPHAKGILHALKDKGIDVAVASRSPS 30 (147)
Q Consensus 4 ~~pgv~~~L~~L~~~g~~l~i~S~~~~ 30 (147)
-.+.+.++++.++++|.++..+|+...
T Consensus 194 ~t~~~~~~~~~a~~~g~~iI~IT~~~~ 220 (285)
T PRK15482 194 SKKEIVLCAEAARKQGATVIAITSLAD 220 (285)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 346788999999999999999997663
No 473
>PF13686 DrsE_2: DsrE/DsrF/DrsH-like family; PDB: 2QS7_C 3PNX_C.
Probab=31.56 E-value=54 Score=22.86 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=18.0
Q ss_pred chhHHHHHHHHHHCCCeEEEEc
Q 032106 5 YPHAKGILHALKDKGIDVAVAS 26 (147)
Q Consensus 5 ~pgv~~~L~~L~~~g~~l~i~S 26 (147)
.|.+.++|+..++.|++++.|+
T Consensus 90 v~sl~eLl~~a~e~GVk~~AC~ 111 (148)
T PF13686_consen 90 VPSLEELLEMAKELGVKFYACS 111 (148)
T ss_dssp ---HHHHHHHHHHCCEEEEEEH
T ss_pred CCCHHHHHHHHHHCCCEEEEeh
Confidence 4678899999999999999999
No 474
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=31.41 E-value=25 Score=24.97 Aligned_cols=27 Identities=7% Similarity=0.265 Sum_probs=21.0
Q ss_pred HHHHHHHHHH---cCCCCCcEEEEeCCccc
Q 032106 60 TDHFQRIHSR---TGVPFNSMLFFDDEDRN 86 (147)
Q Consensus 60 ~~~~~~~~~~---~~~~~~~~v~VgDs~~D 86 (147)
...|+.+++. ++.++++++++|||...
T Consensus 53 ~~a~~~l~~~~~~~~~d~~~i~l~G~SAGg 82 (211)
T PF07859_consen 53 KAAYRWLLKNADKLGIDPERIVLIGDSAGG 82 (211)
T ss_dssp HHHHHHHHHTHHHHTEEEEEEEEEEETHHH
T ss_pred ccceeeeccccccccccccceEEeeccccc
Confidence 3455666555 78999999999999884
No 475
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=31.35 E-value=1.1e+02 Score=19.81 Aligned_cols=30 Identities=20% Similarity=0.380 Sum_probs=22.6
Q ss_pred CcHHHHHHHHHHcCCCCCcEEEEeCCcc-cHHH
Q 032106 58 HKTDHFQRIHSRTGVPFNSMLFFDDEDR-NIDA 89 (147)
Q Consensus 58 p~~~~~~~~~~~~~~~~~~~v~VgDs~~-Di~~ 89 (147)
.|...+..+++.+.- ...|+|||+-. |.+.
T Consensus 50 ~K~~~i~~i~~~fP~--~kfiLIGDsgq~Dpei 80 (100)
T PF09949_consen 50 HKRDNIERILRDFPE--RKFILIGDSGQHDPEI 80 (100)
T ss_pred HHHHHHHHHHHHCCC--CcEEEEeeCCCcCHHH
Confidence 577788888877653 56999999966 7654
No 476
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=31.31 E-value=2.9e+02 Score=22.45 Aligned_cols=94 Identities=13% Similarity=0.173 Sum_probs=53.8
Q ss_pred CCCchhHHHHHHH-HHHCCCeEEEEcCCCChHHHHHHHHhcCcc-cccccceecCCCCCcHHHHHHHHHHcCCCCCcEEE
Q 032106 2 PSLYPHAKGILHA-LKDKGIDVAVASRSPSPDIANTFLEKLNIK-SMFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLF 79 (147)
Q Consensus 2 p~~~pgv~~~L~~-L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~-~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~ 79 (147)
+.+|.++..+++. +...|+.+..+...+ .+.++..++. ... -|++....-.-.-++-..+..++++.| +-.++
T Consensus 101 ~~~Y~~t~~~~~~~l~~~gv~v~~~d~~d-~~~l~~~l~~-~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g---~~~~v 175 (386)
T PF01053_consen 101 DDLYGGTYRLLEELLPRFGVEVTFVDPTD-LEALEAALRP-NTKLVFLESPSNPTLEVPDLEAIAKLAKEHG---DILVV 175 (386)
T ss_dssp SSSSHHHHHHHHHCHHHTTSEEEEESTTS-HHHHHHHHCT-TEEEEEEESSBTTTTB---HHHHHHHHHHTT---T-EEE
T ss_pred CCccCcchhhhhhhhcccCcEEEEeCchh-HHHHHhhccc-cceEEEEEcCCCcccccccHHHHHHHHHHhC---CceEE
Confidence 3578888888875 777889888887554 4444444443 111 122221111124577788888889888 33889
Q ss_pred EeCCcc-c-HHHHHHcCCeEEEE
Q 032106 80 FDDEDR-N-IDAVSKMGVTGILV 100 (147)
Q Consensus 80 VgDs~~-D-i~~a~~~Gi~~i~v 100 (147)
||++.. - ..-....|...+..
T Consensus 176 VDnT~atp~~~~pL~~GaDivv~ 198 (386)
T PF01053_consen 176 VDNTFATPYNQNPLELGADIVVH 198 (386)
T ss_dssp EECTTTHTTTC-GGGGT-SEEEE
T ss_pred eeccccceeeeccCcCCceEEEe
Confidence 999864 2 22345667765544
No 477
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=31.20 E-value=54 Score=19.00 Aligned_cols=42 Identities=17% Similarity=0.125 Sum_probs=21.7
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCC-CChHHHHHHHHhcCcc
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVASRS-PSPDIANTFLEKLNIK 44 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S~~-~~~~~~~~~l~~~gl~ 44 (147)
|.++-.+...|+.+.. |-.+.|.++. .....+...++..|..
T Consensus 10 P~Pl~~~~~~l~~l~~-g~~l~v~~d~~~~~~~i~~~~~~~g~~ 52 (69)
T cd00291 10 PLPVLKTKKALEKLKS-GEVLEVLLDDPGAVEDIPAWAKETGHE 52 (69)
T ss_pred CHHHHHHHHHHhcCCC-CCEEEEEecCCcHHHHHHHHHHHcCCE
Confidence 3444456666666654 4445555533 3234445566666653
No 478
>PF01976 DUF116: Protein of unknown function DUF116; InterPro: IPR002829 These archaeal and bacterial proteins have no known function. Members of this family contain seven conserved cysteines and may also be an integral membrane protein.
Probab=31.19 E-value=80 Score=22.29 Aligned_cols=34 Identities=15% Similarity=0.232 Sum_probs=24.1
Q ss_pred HHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcc
Q 032106 8 AKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIK 44 (147)
Q Consensus 8 v~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~ 44 (147)
+-++++...+.|++++|+|++. .++..++.....
T Consensus 75 Ig~l~~lae~~g~~v~i~~Ggt---~ar~~ik~~~p~ 108 (158)
T PF01976_consen 75 IGDLKKLAEKYGYKVYIATGGT---LARKIIKEYRPK 108 (158)
T ss_pred hhHHHHHHHHcCCEEEEEcChH---HHHHHHHHhCCC
Confidence 4567777788899999999553 356666666544
No 479
>PRK13936 phosphoheptose isomerase; Provisional
Probab=31.18 E-value=90 Score=22.59 Aligned_cols=24 Identities=8% Similarity=0.183 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHCCCeEEEEcCCC
Q 032106 6 PHAKGILHALKDKGIDVAVASRSP 29 (147)
Q Consensus 6 pgv~~~L~~L~~~g~~l~i~S~~~ 29 (147)
+.+.++++.++++|.++..+|+..
T Consensus 125 ~~~~~~~~~ak~~g~~iI~IT~~~ 148 (197)
T PRK13936 125 ANVIQAIQAAHEREMHVVALTGRD 148 (197)
T ss_pred HHHHHHHHHHHHCCCeEEEEECCC
Confidence 567888888888998888888654
No 480
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=31.05 E-value=48 Score=27.26 Aligned_cols=62 Identities=27% Similarity=0.359 Sum_probs=33.5
Q ss_pred EeCCcccHHHHHHcCCeEEEECCCCChHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCCCcc
Q 032106 80 FDDEDRNIDAVSKMGVTGILVGNGVNLGALRQGLTKFSQNWNTSQKNKQKWISKFSQKPDSSE 142 (147)
Q Consensus 80 VgDs~~Di~~a~~~Gi~~i~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (147)
+||...+...+.+.|+....-....+.+.+..++.+..++.. =.+++.+..+.|..+|.+..
T Consensus 370 ~~DQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~vl~~~~-y~~~a~~ls~~~~~~p~~p~ 431 (500)
T PF00201_consen 370 FGDQPRNAARVEEKGVGVVLDKNDLTEEELRAAIREVLENPS-YKENAKRLSSLFRDRPISPL 431 (500)
T ss_dssp STTHHHHHHHHHHTTSEEEEGGGC-SHHHHHHHHHHHHHSHH-HHHHHHHHHHTTT-------
T ss_pred cccCCccceEEEEEeeEEEEEecCCcHHHHHHHHHHHHhhhH-HHHHHHHHHHHHhcCCCCHH
Confidence 355555555555666553333334456677777777665532 46778888888888876643
No 481
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=30.96 E-value=2.3e+02 Score=21.22 Aligned_cols=96 Identities=14% Similarity=0.112 Sum_probs=47.3
Q ss_pred chhHHHHHHHHHHCCCeEEE-EcCCCChHHHHHHHH-hcCcccccccceecCCCCC-cHHHHHHHHHHcCCCCCcEEEEe
Q 032106 5 YPHAKGILHALKDKGIDVAV-ASRSPSPDIANTFLE-KLNIKSMFVAKEIFSSWSH-KTDHFQRIHSRTGVPFNSMLFFD 81 (147)
Q Consensus 5 ~pgv~~~L~~L~~~g~~l~i-~S~~~~~~~~~~~l~-~~gl~~~f~~~~~~~~~kp-~~~~~~~~~~~~~~~~~~~v~Vg 81 (147)
+....++++.+++.|....+ ++.....+.++.+++ ..|+.-+....-.++.... .+..... ++++.-..+--++||
T Consensus 115 ~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~~g~tG~~~~~~~~~~~~-i~~lr~~~~~pI~vg 193 (242)
T cd04724 115 PEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSRTGVTGARTELPDDLKEL-IKRIRKYTDLPIAVG 193 (242)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeCCCCCCCccCCChhHHHH-HHHHHhcCCCcEEEE
Confidence 34566788888999986665 443332344455555 3443322221112222221 1222222 222111124567888
Q ss_pred CCcc---cHHHHHHcCCeEEEECC
Q 032106 82 DEDR---NIDAVSKMGVTGILVGN 102 (147)
Q Consensus 82 Ds~~---Di~~a~~~Gi~~i~v~~ 102 (147)
=+.+ ++..+.++ ...+.++.
T Consensus 194 gGI~~~e~~~~~~~~-ADgvVvGS 216 (242)
T cd04724 194 FGISTPEQAAEVAKY-ADGVIVGS 216 (242)
T ss_pred ccCCCHHHHHHHHcc-CCEEEECH
Confidence 7777 46566666 66677754
No 482
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=30.92 E-value=88 Score=20.35 Aligned_cols=16 Identities=13% Similarity=0.524 Sum_probs=7.7
Q ss_pred CcHHHHHHHHHHcCCC
Q 032106 58 HKTDHFQRIHSRTGVP 73 (147)
Q Consensus 58 p~~~~~~~~~~~~~~~ 73 (147)
+...-+..++.++|++
T Consensus 36 ~~~~el~~~~~~~~~~ 51 (111)
T cd03036 36 PSKEELKKWLEKSGLP 51 (111)
T ss_pred ccHHHHHHHHHHcCCC
Confidence 3444455555555543
No 483
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=30.80 E-value=58 Score=23.01 Aligned_cols=78 Identities=17% Similarity=0.192 Sum_probs=44.7
Q ss_pred CchhHHHHHHHHHHCCCeEEEEcCCC-ChHHHHHHHHhcCcccccccc---eecCCCCCcHHHHHHHHHHcCCCCCcEEE
Q 032106 4 LYPHAKGILHALKDKGIDVAVASRSP-SPDIANTFLEKLNIKSMFVAK---EIFSSWSHKTDHFQRIHSRTGVPFNSMLF 79 (147)
Q Consensus 4 ~~pgv~~~L~~L~~~g~~l~i~S~~~-~~~~~~~~l~~~gl~~~f~~~---~~~~~~kp~~~~~~~~~~~~~~~~~~~v~ 79 (147)
..|++..+++.|.+. +.++|+|.+- .+..++...+= |.++|..+ ..+-+ ..-++-.. =++
T Consensus 69 V~p~aq~v~keLt~~-y~vYivtaamdhp~s~~dK~eW--l~E~FPFi~~qn~vfC------------gnKnivka-Dil 132 (180)
T COG4502 69 VQPFAQTVLKELTSI-YNVYIVTAAMDHPKSCEDKGEW--LKEKFPFISYQNIVFC------------GNKNIVKA-DIL 132 (180)
T ss_pred ccccHHHHHHHHHhh-heEEEEEeccCCchhHHHHHHH--HHHHCCCCChhhEEEe------------cCCCeEEe-eEE
Confidence 579999999999887 9999999551 13333322221 13445442 11111 11122222 378
Q ss_pred EeCCcccHHHHHHcCCeE
Q 032106 80 FDDEDRNIDAVSKMGVTG 97 (147)
Q Consensus 80 VgDs~~Di~~a~~~Gi~~ 97 (147)
|+|++.+++.-+...|-+
T Consensus 133 IDDnp~nLE~F~G~kIlF 150 (180)
T COG4502 133 IDDNPLNLENFKGNKILF 150 (180)
T ss_pred ecCCchhhhhccCceEEE
Confidence 999999998766544443
No 484
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=30.78 E-value=95 Score=23.60 Aligned_cols=26 Identities=19% Similarity=0.236 Sum_probs=22.0
Q ss_pred chhHHHHHHHHHHCCCeEEEEcCCCC
Q 032106 5 YPHAKGILHALKDKGIDVAVASRSPS 30 (147)
Q Consensus 5 ~pgv~~~L~~L~~~g~~l~i~S~~~~ 30 (147)
-|.+.++++.+++.|.++..+|++..
T Consensus 131 T~~vi~al~~Ak~~Ga~~I~It~~~~ 156 (257)
T cd05007 131 TPYVLGALRYARARGALTIGIACNPG 156 (257)
T ss_pred CHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 46788999999999999999996663
No 485
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=30.76 E-value=1.6e+02 Score=19.27 Aligned_cols=37 Identities=19% Similarity=0.202 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCc
Q 032106 6 PHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNI 43 (147)
Q Consensus 6 pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl 43 (147)
+...+..+.+++.|+.+..+|... ...+...++..++
T Consensus 44 ~~l~~~~~~~~~~~~~vv~is~d~-~~~~~~~~~~~~~ 80 (140)
T cd03017 44 CDFRDLYEEFKALGAVVIGVSPDS-VESHAKFAEKYGL 80 (140)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCC-HHHHHHHHHHhCC
Confidence 334444455555566666655333 4444555555554
No 486
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=30.65 E-value=62 Score=26.36 Aligned_cols=25 Identities=32% Similarity=0.660 Sum_probs=21.3
Q ss_pred CCCchhHHHHHHHHHHCCCeEEEEc
Q 032106 2 PSLYPHAKGILHALKDKGIDVAVAS 26 (147)
Q Consensus 2 p~~~pgv~~~L~~L~~~g~~l~i~S 26 (147)
+.-||+..++++.|+++|+++.+-.
T Consensus 79 ~~~FPd~~~~~~~l~~~G~~~~~~~ 103 (441)
T PF01055_consen 79 PERFPDPKQMIDELHDQGIKVVLWV 103 (441)
T ss_dssp TTTTTTHHHHHHHHHHTT-EEEEEE
T ss_pred cccccchHHHHHhHhhCCcEEEEEe
Confidence 5789999999999999999988754
No 487
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=30.63 E-value=65 Score=25.74 Aligned_cols=88 Identities=16% Similarity=0.196 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHHCCCeEEEEcCCCChHHHHH--H------HHhcC-----cccccccceecCCCCCcHHHHHHHHHHcCC
Q 032106 6 PHAKGILHALKDKGIDVAVASRSPSPDIANT--F------LEKLN-----IKSMFVAKEIFSSWSHKTDHFQRIHSRTGV 72 (147)
Q Consensus 6 pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~--~------l~~~g-----l~~~f~~~~~~~~~kp~~~~~~~~~~~~~~ 72 (147)
|=+.-+.+.|+++|++++|+|.++-... +. . ....| +...+.. -.+- .+.-.+....++.+.
T Consensus 73 P~v~~La~~l~~~G~~~~IlSRGYg~~~-~~~~~v~~~~~~~~~GDEpllla~~~~~-~V~V-~~dR~~aa~~l~~~~-- 147 (338)
T PRK01906 73 PTVIALVDALRAAGFTPGVVSRGYGAKI-KHPTAVTPASRASDAGDEPLLIARRTDA-PVWV-CPDRVAAAQALLAAH-- 147 (338)
T ss_pred HHHHHHHHHHHHcCCceEEEecCCCCCC-CCCeEEcCCCChhhhCcHHHHhhhcCCC-eEEE-eCcHHHHHHHHHHhC--
Confidence 4567778889999999999997652110 00 0 00000 0000100 0111 111223334443321
Q ss_pred CCCcEEEEeCCcccHHHHHHcCCeEE
Q 032106 73 PFNSMLFFDDEDRNIDAVSKMGVTGI 98 (147)
Q Consensus 73 ~~~~~v~VgDs~~Di~~a~~~Gi~~i 98 (147)
...+++..||+.-+...++...|-.+
T Consensus 148 ~~~dviIlDDGfQH~~L~RDleIvl~ 173 (338)
T PRK01906 148 PGVDVIVSDDGLQHYRLARDVEIVVF 173 (338)
T ss_pred CCCCEEEECCCCccchhcCCcEEEEE
Confidence 12579999999999888887666544
No 488
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=30.56 E-value=2.7e+02 Score=22.96 Aligned_cols=82 Identities=18% Similarity=0.188 Sum_probs=47.9
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccceecCCCCCcHHHHHHHHHHcCCCCCcEEEEeCCcc---
Q 032106 9 KGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLFFDDEDR--- 85 (147)
Q Consensus 9 ~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgDs~~--- 85 (147)
.+.+..++++|-.+.|||.+. .-.+ ..+-..+-.+.|= .+-+.+..+++++.+ ++-.||++.
T Consensus 166 ~~~~~~~~~~~R~~giVSRGG-si~a-~Wml~~~~ENply---------~~fd~lleI~k~yDv----tlSLGDglRPG~ 230 (432)
T COG0422 166 LEYVPRTKRSGRVTGIVSRGG-SIMA-AWMLHNHKENPLY---------EHFDELLEIFKEYDV----TLSLGDGLRPGC 230 (432)
T ss_pred HHHHHHHHhcCceeeeeccch-HHHH-HHHHHcCCcCchh---------hhHHHHHHHHHHhCe----eeeccCCCCCCc
Confidence 467788888888899999665 3332 3333333322211 123444556666665 566666653
Q ss_pred -----c-------------HHHHHHcCCeEEEECCCCC
Q 032106 86 -----N-------------IDAVSKMGVTGILVGNGVN 105 (147)
Q Consensus 86 -----D-------------i~~a~~~Gi~~i~v~~~~~ 105 (147)
| .+-|+++|+++..=+.|+-
T Consensus 231 i~DA~D~aQ~~EL~tlgeL~krA~~~gVQvmvEGPGHv 268 (432)
T COG0422 231 IADANDEAQFAELITLGELTKRAWEAGVQVMVEGPGHV 268 (432)
T ss_pred ccCCccHHHHHHHHHHHHHHHHHHHcCCEEEEECCCcC
Confidence 1 2457778999776666653
No 489
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=30.54 E-value=2.5e+02 Score=23.99 Aligned_cols=34 Identities=15% Similarity=0.247 Sum_probs=25.5
Q ss_pred chhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcc
Q 032106 5 YPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIK 44 (147)
Q Consensus 5 ~pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~ 44 (147)
-+++.++.+.|.+.|+.+. .|.+. ...|+..|+.
T Consensus 14 K~~iv~lAk~L~~lGfeI~-AT~GT-----ak~L~e~GI~ 47 (513)
T PRK00881 14 KTGIVEFAKALVELGVEIL-STGGT-----AKLLAEAGIP 47 (513)
T ss_pred cccHHHHHHHHHHCCCEEE-EcchH-----HHHHHHCCCe
Confidence 3678899999999999884 66343 3567888874
No 490
>PLN02382 probable sucrose-phosphatase
Probab=30.39 E-value=1.1e+02 Score=25.06 Aligned_cols=34 Identities=6% Similarity=0.078 Sum_probs=26.6
Q ss_pred HHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcc
Q 032106 10 GILHALKDKGIDVAVASRSPSPDIANTFLEKLNIK 44 (147)
Q Consensus 10 ~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~ 44 (147)
.+++.+.++|+.++++|++. ......+++.+++.
T Consensus 36 ~l~~~~~~~gi~fv~aTGR~-~~~~~~l~~~~~l~ 69 (413)
T PLN02382 36 ALWEAEYRHDSLLVFSTGRS-PTLYKELRKEKPLL 69 (413)
T ss_pred HHHHHhhcCCeeEEEEcCCC-HHHHHHHHHhCCCC
Confidence 34477889999999999777 66677888777754
No 491
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=30.31 E-value=1.4e+02 Score=20.33 Aligned_cols=18 Identities=17% Similarity=0.259 Sum_probs=9.8
Q ss_pred HHHHHHHHHCCCeEEEEc
Q 032106 9 KGILHALKDKGIDVAVAS 26 (147)
Q Consensus 9 ~~~L~~L~~~g~~l~i~S 26 (147)
.++++...+.+..+..+|
T Consensus 40 e~~v~aa~~~~adiVglS 57 (128)
T cd02072 40 EEFIDAAIETDADAILVS 57 (128)
T ss_pred HHHHHHHHHcCCCEEEEe
Confidence 345555555555555555
No 492
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=30.15 E-value=1.4e+02 Score=22.14 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCc
Q 032106 6 PHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNI 43 (147)
Q Consensus 6 pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl 43 (147)
..+.++|+.|.+.|++++++.++........+++..|+
T Consensus 57 ~~~~~~l~~l~~~g~~v~~v~GNHD~~~~~~~~~~~g~ 94 (241)
T PRK05340 57 REIAAALKALSDSGVPCYFMHGNRDFLLGKRFAKAAGM 94 (241)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCCchhhhHHHHHhCCC
Confidence 35677888888899999999966644333445555664
No 493
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=30.03 E-value=1.4e+02 Score=22.56 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=20.2
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcc
Q 032106 9 KGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIK 44 (147)
Q Consensus 9 ~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~ 44 (147)
.++++.+++.|+++.+-|=+. +..++.+++.+|++
T Consensus 218 ~~~v~~~~~~G~~v~vWTVn~-~~~~~~l~~~~GVd 252 (258)
T cd08573 218 SAYVRYWRARGIRVIAWTVNT-PTEKQYFAKTLNVP 252 (258)
T ss_pred HHHHHHHHHCCCEEEEEecCC-HHHHHHHHHHhCCC
Confidence 456677777777777777322 44444433326665
No 494
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=29.91 E-value=2.5e+02 Score=21.41 Aligned_cols=88 Identities=14% Similarity=0.098 Sum_probs=51.5
Q ss_pred HHHHHHHH-HCCCeEEEEcCCCChHHHHHHHHhcCcccccccc---------eecCC------CCCcHHHHHHHHHHcCC
Q 032106 9 KGILHALK-DKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAK---------EIFSS------WSHKTDHFQRIHSRTGV 72 (147)
Q Consensus 9 ~~~L~~L~-~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~---------~~~~~------~kp~~~~~~~~~~~~~~ 72 (147)
..+...+. ..|+.++|-||......++...++.+=..++..- +..+. ++|+...|..-+.
T Consensus 98 ~~fVa~vA~r~GiILFv~tn~~~~~~ve~aA~r~~gy~~~~~w~~G~lTN~~~l~g~~~~~~~~~pd~~~f~~t~~---- 173 (251)
T KOG0832|consen 98 LNFVAHVAHRGGIILFVGTNNGFKDLVERAARRAGGYSHNRKWLGGLLTNARELFGALVRKFLSLPDALCFLPTLT---- 173 (251)
T ss_pred HHHHHHHHhcCCeEEEEecCcchHHHHHHHHHHhcCceeeeeeccceeecchhhcccccccccCCCcceeecccCC----
Confidence 34444444 4478888888887677777777766644333220 11111 2444444332222
Q ss_pred CCCcEEEEeCCcc---cHHHHHHcCCeEEEECC
Q 032106 73 PFNSMLFFDDEDR---NIDAVSKMGVTGILVGN 102 (147)
Q Consensus 73 ~~~~~v~VgDs~~---Di~~a~~~Gi~~i~v~~ 102 (147)
.++++|=|... -+..|.+++|.+|++-+
T Consensus 174 --~D~vvvln~~e~~sAilEA~K~~IPTIgIVD 204 (251)
T KOG0832|consen 174 --PDLVVVLNPEENHSAILEAAKMAIPTIGIVD 204 (251)
T ss_pred --cceeEecCcccccHHHHHHHHhCCCeEEEec
Confidence 26677766644 47788889999999854
No 495
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=29.89 E-value=2.4e+02 Score=21.04 Aligned_cols=87 Identities=18% Similarity=0.210 Sum_probs=50.7
Q ss_pred CCeEEEEcCCCChHHHHH--HHH-hcCcccccccceecCCCCCcHHHHHHHHHHcCCCCCcEEEEeCC---cccHHHHHH
Q 032106 19 GIDVAVASRSPSPDIANT--FLE-KLNIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLFFDDE---DRNIDAVSK 92 (147)
Q Consensus 19 g~~l~i~S~~~~~~~~~~--~l~-~~gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgDs---~~Di~~a~~ 92 (147)
|.+++|++.++ +....- .+. .+.. +.+..+ |..+.++.++.++|++.+++.+|.=. ...+.....
T Consensus 68 g~~v~VLasGD-P~f~G~g~~l~~~~~~----~~v~iI----PgiSS~q~a~ARlg~~~~~~~~islHgr~~~~l~~~~~ 138 (210)
T COG2241 68 GRDVVVLASGD-PLFSGVGRLLRRKFSC----EEVEII----PGISSVQLAAARLGWPLQDTEVISLHGRPVELLRPLLE 138 (210)
T ss_pred CCCeEEEecCC-cchhhhHHHHHHhcCc----cceEEe----cChhHHHHHHHHhCCChHHeEEEEecCCCHHHHHHHHh
Confidence 77788887666 544211 111 1111 112333 77999999999999999887777544 345665555
Q ss_pred cCCeEEEECCC-CChHHHHHHHH
Q 032106 93 MGVTGILVGNG-VNLGALRQGLT 114 (147)
Q Consensus 93 ~Gi~~i~v~~~-~~~~~~~~~l~ 114 (147)
-|-..+.+... ..+......+.
T Consensus 139 ~~~~~vil~~~~~~P~~IA~~L~ 161 (210)
T COG2241 139 NGRRLVILTPDDFGPAEIAKLLT 161 (210)
T ss_pred CCceEEEeCCCCCCHHHHHHHHH
Confidence 56565555433 33545444443
No 496
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.80 E-value=3e+02 Score=22.16 Aligned_cols=108 Identities=11% Similarity=0.115 Sum_probs=56.4
Q ss_pred HHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCcccccccceecCCCCCcHHHHHHH-----HHHcCCCCCcEEEEeC
Q 032106 8 AKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRI-----HSRTGVPFNSMLFFDD 82 (147)
Q Consensus 8 v~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~~~~~~~~kp~~~~~~~~-----~~~~~~~~~~~v~VgD 82 (147)
...++..|+++|+.+.|.+ .. ...+-.+++.+|+.. ..+.-.+...=+......+ +.++....+-.+-++=
T Consensus 16 Fk~lI~elekkG~ev~iT~-rd-~~~v~~LLd~ygf~~--~~Igk~g~~tl~~Kl~~~~eR~~~L~ki~~~~kpdv~i~~ 91 (346)
T COG1817 16 FKNLIWELEKKGHEVLITC-RD-FGVVTELLDLYGFPY--KSIGKHGGVTLKEKLLESAERVYKLSKIIAEFKPDVAIGK 91 (346)
T ss_pred HHHHHHHHHhCCeEEEEEE-ee-cCcHHHHHHHhCCCe--EeecccCCccHHHHHHHHHHHHHHHHHHHhhcCCceEeec
Confidence 4678899999999888888 44 455678899999863 2221111111111222222 2233333333455551
Q ss_pred -CcccHHHHHHcCCeEEEECCCCChHHHHHHHHHHHHh
Q 032106 83 -EDRNIDAVSKMGVTGILVGNGVNLGALRQGLTKFSQN 119 (147)
Q Consensus 83 -s~~Di~~a~~~Gi~~i~v~~~~~~~~~~~~l~~~~~~ 119 (147)
|+.=-+-|...|+..+.+.+..........+-.|.+.
T Consensus 92 ~s~~l~rvafgLg~psIi~~D~ehA~~qnkl~~Pla~~ 129 (346)
T COG1817 92 HSPELPRVAFGLGIPSIIFVDNEHAEAQNKLTLPLADV 129 (346)
T ss_pred CCcchhhHHhhcCCceEEecCChhHHHHhhcchhhhhh
Confidence 2222334555788888887655443333333344433
No 497
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=29.76 E-value=1.3e+02 Score=22.52 Aligned_cols=41 Identities=27% Similarity=0.430 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCccccccc
Q 032106 6 PHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVA 49 (147)
Q Consensus 6 pgv~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~~f~~ 49 (147)
+++-..+.+|.+++..++++|.++ ...+....+++|.. |..
T Consensus 93 D~~~g~l~hL~~rd~tfa~vSraP-~~~i~afk~rmGW~--~pw 133 (211)
T PF05988_consen 93 DHIDGALRHLHARDTTFAVVSRAP-LEKIEAFKRRMGWT--FPW 133 (211)
T ss_pred hhhhhhHHHHHhCCceEEEEeCCC-HHHHHHHHHhcCCC--ceE
Confidence 344577899999999999999888 56667888899986 554
No 498
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=29.71 E-value=2.6e+02 Score=21.52 Aligned_cols=82 Identities=21% Similarity=0.274 Sum_probs=51.8
Q ss_pred CCCeEEEEcCCCC--hHHHHHHHHhc--CcccccccceecCCCCCcHHHHHHHHHHcCCCCCcEEEEeCCcc--cHHHHH
Q 032106 18 KGIDVAVASRSPS--PDIANTFLEKL--NIKSMFVAKEIFSSWSHKTDHFQRIHSRTGVPFNSMLFFDDEDR--NIDAVS 91 (147)
Q Consensus 18 ~g~~l~i~S~~~~--~~~~~~~l~~~--gl~~~f~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~VgDs~~--Di~~a~ 91 (147)
.++.+.+++++.- ++.+..+...+ .+..-|-.+-.-...-|-|..-+++++..|+ .|+.|||.+. +.++.+
T Consensus 30 edI~vrv~gsGaKm~pe~~~~~~~~~~~~~~pDf~i~isPN~a~PGP~~ARE~l~~~~i---P~IvI~D~p~~K~~d~l~ 106 (277)
T PRK00994 30 EDIDVRVVGSGAKMGPEEVEEVVKKMLEEWKPDFVIVISPNPAAPGPKKAREILKAAGI---PCIVIGDAPGKKVKDAME 106 (277)
T ss_pred cCceEEEeccCCCCCHHHHHHHHHHHHHhhCCCEEEEECCCCCCCCchHHHHHHHhcCC---CEEEEcCCCccchHHHHH
Confidence 3788999985541 22233222222 2232233211111245778888899998887 3999999977 678888
Q ss_pred HcCCeEEEECC
Q 032106 92 KMGVTGILVGN 102 (147)
Q Consensus 92 ~~Gi~~i~v~~ 102 (147)
..|+.-|.+..
T Consensus 107 ~~g~GYIivk~ 117 (277)
T PRK00994 107 EQGLGYIIVKA 117 (277)
T ss_pred hcCCcEEEEec
Confidence 88999888764
No 499
>COG4018 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.71 E-value=1.5e+02 Score=24.10 Aligned_cols=56 Identities=16% Similarity=0.225 Sum_probs=34.3
Q ss_pred HHHHHHHcCCCCCcEEEEeCCcccHH----HHHHcCCeEEEECCCCChHHHHHHHHHHHHh
Q 032106 63 FQRIHSRTGVPFNSMLFFDDEDRNID----AVSKMGVTGILVGNGVNLGALRQGLTKFSQN 119 (147)
Q Consensus 63 ~~~~~~~~~~~~~~~v~VgDs~~Di~----~a~~~Gi~~i~v~~~~~~~~~~~~l~~~~~~ 119 (147)
.....+++|---+-+++|||+..|+. ++-..++..+.+. |.+--.....+.-|...
T Consensus 211 VaEtArk~GkGveaI~hvgDGyDdli~G~kA~ve~~vDvfvvE-GgPFNrA~dRL~AFa~A 270 (505)
T COG4018 211 VAETARKSGKGVEAILHVGDGYDDLIDGLKAAVEEVVDVFVVE-GGPFNRAEDRLSAFARA 270 (505)
T ss_pred HHHHHHHhCCCceeEEEecCCcHHHHHHHHHHHHhcCcEEEEc-CCCcchhhHHHHHHHHH
Confidence 34556788877889999999988754 4555566655553 33322333344555544
No 500
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=29.70 E-value=1.5e+02 Score=18.55 Aligned_cols=35 Identities=9% Similarity=0.051 Sum_probs=24.9
Q ss_pred HHHHHHHHHHCCCeEEEEcCCCChHHHHHHHHhcCccc
Q 032106 8 AKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKS 45 (147)
Q Consensus 8 v~~~L~~L~~~g~~l~i~S~~~~~~~~~~~l~~~gl~~ 45 (147)
...+.+.++++|..+.++. .+ +. +...++..|+..
T Consensus 60 L~~l~~~~~~~g~~l~l~~-~~-~~-v~~~l~~~gl~~ 94 (100)
T cd06844 60 LLERSRLAEAVGGQFVLTG-IS-PA-VRITLTESGLDK 94 (100)
T ss_pred HHHHHHHHHHcCCEEEEEC-CC-HH-HHHHHHHhCchh
Confidence 3456678888899888887 33 33 467788888765
Done!