Query 032107
Match_columns 147
No_of_seqs 117 out of 1646
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 15:36:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032107.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032107hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h2v_Z 20 kDa nuclear CAP bind 99.9 6.9E-25 2.4E-29 147.0 13.3 89 29-117 35-123 (156)
2 4fxv_A ELAV-like protein 1; RN 99.9 1.6E-22 5.3E-27 125.9 12.2 85 28-112 14-98 (99)
3 1u6f_A Tcubp1, RNA-binding pro 99.9 1.2E-21 4E-26 128.8 13.9 88 29-116 38-125 (139)
4 3ex7_B RNA-binding protein 8A; 99.9 2.4E-22 8E-27 130.0 9.5 88 29-116 18-105 (126)
5 2dnz_A Probable RNA-binding pr 99.9 1.4E-21 4.8E-26 120.4 12.5 86 31-116 3-88 (95)
6 3pgw_S U1-70K; protein-RNA com 99.9 3.8E-21 1.3E-25 147.5 14.8 84 32-115 101-184 (437)
7 3s8s_A Histone-lysine N-methyl 99.9 4.6E-21 1.6E-25 121.4 12.4 83 31-113 4-86 (110)
8 2dgo_A Cytotoxic granule-assoc 99.9 1.7E-20 5.8E-25 119.4 15.0 89 30-118 12-100 (115)
9 1x5t_A Splicing factor 3B subu 99.9 2.9E-21 9.8E-26 119.2 11.1 86 31-116 3-89 (96)
10 1x5s_A Cold-inducible RNA-bind 99.9 3.6E-21 1.2E-25 120.1 11.2 88 29-116 8-95 (102)
11 2cqb_A Peptidyl-prolyl CIS-tra 99.9 3.7E-21 1.3E-25 120.0 10.8 88 29-116 8-95 (102)
12 1whw_A Hypothetical protein ri 99.9 7.1E-21 2.4E-25 118.1 12.0 86 31-116 6-91 (99)
13 3bs9_A Nucleolysin TIA-1 isofo 99.9 8.1E-21 2.8E-25 115.1 11.7 83 31-113 4-86 (87)
14 2cpz_A CUG triplet repeat RNA- 99.9 9.7E-21 3.3E-25 120.6 12.5 87 30-116 22-108 (115)
15 2dgs_A DAZ-associated protein 99.9 9.6E-21 3.3E-25 117.6 12.1 85 31-116 8-92 (99)
16 1x5u_A Splicing factor 3B subu 99.9 6.8E-21 2.3E-25 119.4 11.4 87 30-116 12-98 (105)
17 2cq0_A Eukaryotic translation 99.9 1.1E-20 3.8E-25 118.1 11.9 87 30-116 12-98 (103)
18 3md1_A Nuclear and cytoplasmic 99.9 1.7E-20 6E-25 112.6 12.2 81 34-114 2-82 (83)
19 2cqd_A RNA-binding region cont 99.9 2E-20 6.7E-25 119.3 13.0 84 30-114 14-97 (116)
20 1wi8_A EIF-4B, eukaryotic tran 99.9 1.2E-20 4E-25 118.2 11.4 84 31-116 13-97 (104)
21 2fy1_A RNA-binding motif prote 99.9 1.9E-20 6.5E-25 119.6 12.6 84 31-115 5-88 (116)
22 2cpf_A RNA binding motif prote 99.9 1.7E-20 5.8E-25 116.2 11.9 86 31-116 3-91 (98)
23 2lxi_A RNA-binding protein 10; 99.9 1.6E-21 5.5E-26 119.5 7.2 82 34-115 2-85 (91)
24 1p27_B RNA-binding protein 8A; 99.9 8.3E-21 2.8E-25 119.2 10.6 86 30-115 20-105 (106)
25 2do4_A Squamous cell carcinoma 99.9 2.2E-20 7.7E-25 116.1 12.4 86 30-116 14-99 (100)
26 2dnm_A SRP46 splicing factor; 99.9 8.1E-21 2.8E-25 118.7 10.4 87 30-116 10-96 (103)
27 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.6E-20 5.5E-25 113.3 11.2 82 30-111 4-85 (85)
28 2dng_A Eukaryotic translation 99.8 2.5E-20 8.6E-25 116.5 12.4 85 30-116 12-96 (103)
29 3q2s_C Cleavage and polyadenyl 99.8 2E-21 7E-26 137.6 8.3 80 32-111 67-148 (229)
30 2d9p_A Polyadenylate-binding p 99.8 2.3E-20 7.9E-25 116.6 11.9 85 30-116 12-96 (103)
31 2lkz_A RNA-binding protein 5; 99.8 4.7E-21 1.6E-25 118.3 8.1 79 34-112 10-94 (95)
32 2dgp_A Bruno-like 4, RNA bindi 99.8 1.6E-20 5.5E-25 117.9 10.5 88 29-116 9-99 (106)
33 2cph_A RNA binding motif prote 99.8 2.9E-20 9.8E-25 116.9 11.6 87 30-116 12-100 (107)
34 2do0_A HnRNP M, heterogeneous 99.8 1.7E-19 5.7E-24 114.6 15.2 86 30-116 12-97 (114)
35 2cpe_A RNA-binding protein EWS 99.8 2.6E-20 8.9E-25 118.2 11.3 87 30-116 12-106 (113)
36 1x4h_A RNA-binding protein 28; 99.8 3.6E-20 1.2E-24 117.1 11.9 87 30-116 12-104 (111)
37 2dhg_A TRNA selenocysteine ass 99.8 2.5E-20 8.5E-25 116.6 11.0 86 30-116 6-93 (104)
38 2cqc_A Arginine/serine-rich sp 99.8 3.4E-20 1.2E-24 114.1 11.0 83 30-112 12-94 (95)
39 4a8x_A RNA-binding protein wit 99.8 3.5E-20 1.2E-24 112.4 10.8 84 32-115 3-87 (88)
40 2cqi_A Nucleolysin TIAR; RNA r 99.8 1E-19 3.4E-24 113.7 12.9 85 30-116 12-96 (103)
41 3p5t_L Cleavage and polyadenyl 99.8 5.5E-21 1.9E-25 116.8 6.9 82 34-115 2-85 (90)
42 1oo0_B CG8781-PA, drosophila Y 99.8 2.8E-20 9.4E-25 117.6 10.3 87 30-116 23-109 (110)
43 2e5h_A Zinc finger CCHC-type a 99.8 3.7E-20 1.3E-24 113.8 10.5 82 30-111 13-94 (94)
44 2dnh_A Bruno-like 5, RNA bindi 99.8 9E-20 3.1E-24 114.2 12.2 85 31-116 13-100 (105)
45 1x4a_A Splicing factor, argini 99.8 1.3E-19 4.6E-24 114.3 13.1 83 30-115 19-101 (109)
46 2x1f_A MRNA 3'-END-processing 99.8 5.9E-20 2E-24 113.4 11.1 82 33-114 2-83 (96)
47 2cq3_A RNA-binding protein 9; 99.8 2E-19 6.9E-24 112.3 13.5 85 30-116 12-96 (103)
48 4f25_A Polyadenylate-binding p 99.8 7.8E-20 2.7E-24 116.5 11.7 81 33-115 5-85 (115)
49 2jrs_A RNA-binding protein 39; 99.8 5E-20 1.7E-24 116.2 10.6 86 29-114 22-107 (108)
50 2dh8_A DAZ-associated protein 99.8 3.8E-20 1.3E-24 116.0 9.8 86 30-116 13-98 (105)
51 1rk8_A CG8781-PA, CG8781-PA pr 99.8 6.9E-20 2.4E-24 123.7 11.8 87 30-116 69-155 (165)
52 3ulh_A THO complex subunit 4; 99.8 1.3E-19 4.5E-24 113.9 12.1 83 29-112 25-107 (107)
53 2la6_A RNA-binding protein FUS 99.8 8.9E-20 3E-24 113.2 11.1 83 29-111 9-99 (99)
54 2ywk_A Putative RNA-binding pr 99.8 1E-19 3.5E-24 112.0 11.1 83 29-112 12-94 (95)
55 2div_A TRNA selenocysteine ass 99.8 8.7E-20 3E-24 113.2 10.8 84 30-113 6-94 (99)
56 1x4c_A Splicing factor, argini 99.8 2.2E-19 7.4E-24 113.2 12.7 79 31-116 13-96 (108)
57 3ucg_A Polyadenylate-binding p 99.8 1.2E-19 4.1E-24 110.3 11.2 80 33-113 6-85 (89)
58 2dgu_A Heterogeneous nuclear r 99.8 2.6E-19 9.1E-24 111.8 13.0 79 31-117 9-87 (103)
59 2fc8_A NCL protein; structure 99.8 1.2E-19 4.1E-24 113.1 11.4 85 29-116 11-95 (102)
60 1x4b_A Heterogeneous nuclear r 99.8 9.4E-20 3.2E-24 116.2 11.1 83 33-116 27-109 (116)
61 2khc_A Testis-specific RNP-typ 99.8 4.7E-20 1.6E-24 117.9 9.6 83 29-111 36-118 (118)
62 2kxn_B Transformer-2 protein h 99.8 3.5E-20 1.2E-24 120.5 9.1 87 29-115 42-128 (129)
63 2dgv_A HnRNP M, heterogeneous 99.8 1.4E-19 4.6E-24 110.8 11.1 84 30-115 5-88 (92)
64 2dgx_A KIAA0430 protein; RRM d 99.8 1.5E-19 5.1E-24 111.7 11.1 82 31-115 7-92 (96)
65 2dgw_A Probable RNA-binding pr 99.8 2.7E-19 9.2E-24 109.3 12.1 83 30-115 7-89 (91)
66 2cqg_A TDP-43, TAR DNA-binding 99.8 4.2E-19 1.4E-23 110.8 13.2 86 29-116 11-96 (103)
67 1wez_A HnRNP H', FTP-3, hetero 99.8 1.1E-19 3.9E-24 113.5 10.0 82 30-114 12-93 (102)
68 2rs2_A Musashi-1, RNA-binding 99.8 1.4E-19 4.8E-24 114.3 10.5 88 28-116 20-107 (109)
69 2cqp_A RNA-binding protein 12; 99.8 8.3E-20 2.8E-24 113.0 9.3 84 31-114 13-96 (98)
70 3s7r_A Heterogeneous nuclear r 99.8 3.5E-19 1.2E-23 107.9 11.6 80 30-110 8-87 (87)
71 2jwn_A Embryonic polyadenylate 99.8 8.5E-20 2.9E-24 117.6 9.3 83 32-115 35-117 (124)
72 2ek1_A RNA-binding protein 12; 99.8 7E-20 2.4E-24 112.7 8.5 81 32-112 14-94 (95)
73 3ns6_A Eukaryotic translation 99.8 3E-20 1E-24 115.7 6.7 81 33-113 6-93 (100)
74 3n9u_C Cleavage and polyadenyl 99.8 2.5E-19 8.4E-24 120.0 11.4 81 32-112 54-136 (156)
75 2cpi_A CCR4-NOT transcription 99.8 1.9E-19 6.4E-24 114.1 9.9 83 32-114 14-102 (111)
76 2dnq_A RNA-binding protein 4B; 99.8 5.4E-19 1.9E-23 107.8 11.4 79 30-116 5-83 (90)
77 2cq4_A RNA binding motif prote 99.8 1.3E-20 4.5E-25 119.8 4.2 81 33-114 25-105 (114)
78 2fc9_A NCL protein; structure 99.8 4.3E-19 1.5E-23 110.4 10.8 82 30-115 12-93 (101)
79 1x4g_A Nucleolysin TIAR; struc 99.8 1.4E-18 4.7E-23 109.6 13.3 85 26-116 18-102 (109)
80 1p1t_A Cleavage stimulation fa 99.8 2.6E-19 8.8E-24 111.9 9.7 83 33-115 8-90 (104)
81 2m2b_A RNA-binding protein 10; 99.8 7.1E-20 2.4E-24 119.3 7.2 84 30-114 20-109 (131)
82 2kn4_A Immunoglobulin G-bindin 99.8 3.5E-19 1.2E-23 119.2 10.7 86 31-116 68-153 (158)
83 1x4e_A RNA binding motif, sing 99.8 3.2E-20 1.1E-24 112.0 5.0 81 31-111 3-83 (85)
84 2dis_A Unnamed protein product 99.8 5.9E-19 2E-23 111.2 10.9 85 31-115 6-94 (109)
85 1sjq_A Polypyrimidine tract-bi 99.8 3.8E-19 1.3E-23 111.2 9.8 82 29-116 12-95 (105)
86 2hvz_A Splicing factor, argini 99.8 4.3E-19 1.5E-23 110.4 10.0 78 34-116 1-78 (101)
87 2j76_E EIF-4B, EIF4B, eukaryot 99.8 9.3E-20 3.2E-24 113.4 6.8 84 29-114 15-99 (100)
88 2cpx_A Hypothetical protein FL 99.8 7.7E-20 2.6E-24 116.3 6.5 87 30-116 22-108 (115)
89 2lcw_A RNA-binding protein FUS 99.7 3.1E-21 1.1E-25 123.1 0.0 86 31-116 5-98 (116)
90 2dgt_A RNA-binding protein 30; 99.8 1.4E-18 4.9E-23 106.3 11.9 78 30-115 7-84 (92)
91 2err_A Ataxin-2-binding protei 99.8 5.4E-19 1.9E-23 111.6 9.8 83 29-113 25-107 (109)
92 1s79_A Lupus LA protein; RRM, 99.8 3.1E-19 1.1E-23 111.7 8.3 79 32-112 10-88 (103)
93 2lea_A Serine/arginine-rich sp 99.8 1.4E-19 5E-24 118.4 7.1 85 32-116 46-130 (135)
94 1why_A Hypothetical protein ri 99.8 1E-18 3.5E-23 108.0 10.4 80 30-115 14-95 (97)
95 2mss_A Protein (musashi1); RNA 99.8 1.9E-19 6.4E-24 106.2 6.7 75 35-110 1-75 (75)
96 2cpy_A RNA-binding protein 12; 99.8 3.3E-19 1.1E-23 113.5 8.3 83 30-114 12-95 (114)
97 2kt5_A RNA and export factor-b 99.8 1.2E-18 4.3E-23 112.2 11.0 85 29-114 31-115 (124)
98 2jvr_A Nucleolar protein 3; RN 99.8 4.9E-19 1.7E-23 112.1 8.8 83 29-115 24-107 (111)
99 2dnp_A RNA-binding protein 14; 99.8 2.4E-18 8.2E-23 104.9 11.4 78 30-115 6-83 (90)
100 2cq1_A PTB-like protein L; RRM 99.8 2.7E-18 9.4E-23 107.0 11.8 81 30-116 12-94 (101)
101 3r27_A HnRNP L, heterogeneous 99.8 1.7E-18 5.7E-23 107.4 10.7 79 30-114 18-98 (100)
102 1uaw_A Mouse-musashi-1; RNP-ty 99.8 2.4E-19 8.3E-24 106.1 6.6 76 34-110 1-76 (77)
103 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 1.1E-18 3.6E-23 114.5 10.1 82 29-110 59-140 (140)
104 1wg5_A Heterogeneous nuclear r 99.8 1.3E-18 4.5E-23 108.9 10.1 83 30-114 12-95 (104)
105 2jvo_A Nucleolar protein 3; nu 99.8 1.7E-18 5.7E-23 109.2 10.6 80 28-115 26-105 (108)
106 3beg_B Splicing factor, argini 99.8 8E-19 2.8E-23 111.8 8.9 76 32-114 15-95 (115)
107 2cqh_A IGF-II mRNA-binding pro 99.8 1.6E-18 5.4E-23 106.3 9.9 79 31-116 6-86 (93)
108 2hgn_A Heterogeneous nuclear r 99.8 9.1E-20 3.1E-24 119.8 4.5 83 29-114 42-124 (139)
109 1x5o_A RNA binding motif, sing 99.8 2.2E-18 7.6E-23 109.4 10.7 82 31-113 23-112 (114)
110 2db1_A Heterogeneous nuclear r 99.8 1.2E-18 4E-23 111.6 9.3 82 30-113 14-98 (118)
111 2ad9_A Polypyrimidine tract-bi 99.8 3.7E-18 1.3E-22 109.1 11.6 82 29-116 27-110 (119)
112 1wf1_A RNA-binding protein RAL 99.8 3.4E-18 1.2E-22 108.0 11.3 77 31-115 25-102 (110)
113 2wbr_A GW182, gawky, LD47780P; 99.8 2.2E-18 7.4E-23 103.8 9.8 73 33-111 7-79 (89)
114 2cpj_A Non-POU domain-containi 99.8 3.1E-18 1.1E-22 106.1 10.6 80 30-115 12-91 (99)
115 1x4d_A Matrin 3; structural ge 99.8 1.5E-18 5.1E-23 108.3 9.0 79 30-114 12-93 (102)
116 2ki2_A SS-DNA binding protein 99.8 1.6E-19 5.6E-24 110.0 4.4 80 34-114 2-81 (90)
117 1wel_A RNA-binding protein 12; 99.8 4E-19 1.4E-23 114.6 6.3 83 29-112 21-103 (124)
118 2hgl_A HNRPF protein, heteroge 99.8 1.2E-18 4E-23 114.1 8.6 81 30-112 41-124 (136)
119 2xnq_A Nuclear polyadenylated 99.8 6.6E-18 2.3E-22 104.5 11.4 78 28-113 17-95 (97)
120 2la4_A Nuclear and cytoplasmic 99.8 3.4E-18 1.2E-22 106.3 9.9 79 28-112 22-100 (101)
121 2cpd_A Apobec-1 stimulating pr 99.8 1.1E-17 3.7E-22 103.7 12.1 78 30-115 12-91 (99)
122 1wex_A Hypothetical protein (r 99.8 4.3E-18 1.5E-22 106.6 10.2 80 31-116 13-94 (104)
123 1fj7_A Nucleolin RBD1, protein 99.8 1.9E-19 6.5E-24 112.0 3.8 83 31-115 15-97 (101)
124 2nlw_A Eukaryotic translation 99.8 1.7E-18 5.8E-23 108.6 7.7 82 31-114 13-101 (105)
125 2kvi_A Nuclear polyadenylated 99.8 3.7E-18 1.3E-22 105.3 9.0 77 31-115 8-85 (96)
126 2e5j_A Methenyltetrahydrofolat 99.8 4.2E-18 1.4E-22 105.2 9.1 81 30-115 16-96 (97)
127 3lqv_A PRE-mRNA branch site pr 99.8 6.8E-18 2.3E-22 107.3 9.9 82 29-113 4-85 (115)
128 4f02_A Polyadenylate-binding p 99.8 1.4E-17 4.9E-22 116.4 12.3 83 31-113 13-95 (213)
129 2a3j_A U1 small nuclear ribonu 99.8 5.9E-18 2E-22 109.6 9.4 81 31-114 27-111 (127)
130 1iqt_A AUF1, heterogeneous nuc 99.8 1.1E-18 3.8E-23 102.8 5.4 75 35-110 1-75 (75)
131 1nu4_A U1A RNA binding domain; 99.8 4.8E-18 1.6E-22 104.8 8.3 81 31-114 6-90 (97)
132 1fjc_A Nucleolin RBD2, protein 99.7 4.2E-18 1.4E-22 104.9 8.0 80 31-115 14-93 (96)
133 2dnn_A RNA-binding protein 12; 99.7 9.4E-18 3.2E-22 105.9 9.7 77 33-112 16-92 (109)
134 1fxl_A Paraneoplastic encephal 99.7 2.5E-17 8.7E-22 110.1 12.3 82 33-114 2-83 (167)
135 2f3j_A RNA and export factor b 99.7 7.4E-18 2.5E-22 115.0 9.8 83 30-113 85-167 (177)
136 1l3k_A Heterogeneous nuclear r 99.7 1.6E-17 5.6E-22 114.0 11.4 86 31-117 102-187 (196)
137 1x4f_A Matrin 3; structural ge 99.7 5.7E-18 2E-22 107.1 8.1 81 29-115 21-104 (112)
138 2ytc_A PRE-mRNA-splicing facto 99.7 1.7E-17 6E-22 99.9 9.9 75 31-111 10-85 (85)
139 2e5g_A U6 snRNA-specific termi 99.7 2.7E-17 9.1E-22 101.0 10.8 78 32-115 7-84 (94)
140 2krb_A Eukaryotic translation 99.7 2.2E-18 7.4E-23 103.1 5.6 72 34-107 2-80 (81)
141 3md3_A Nuclear and cytoplasmic 99.7 3.5E-17 1.2E-21 109.4 12.1 82 30-111 84-165 (166)
142 2lmi_A GRSF-1, G-rich sequence 99.7 2.1E-18 7.2E-23 108.5 5.5 81 30-112 8-91 (107)
143 1b7f_A Protein (SXL-lethal pro 99.7 2.6E-17 8.8E-22 110.4 11.1 83 32-114 2-84 (168)
144 2qfj_A FBP-interacting repress 99.7 4.3E-17 1.5E-21 113.5 12.4 87 30-116 122-208 (216)
145 1x5p_A Negative elongation fac 99.7 5.1E-17 1.8E-21 100.3 11.4 79 30-116 12-90 (97)
146 3egn_A RNA-binding protein 40; 99.7 4.1E-18 1.4E-22 112.3 6.2 87 30-116 42-133 (143)
147 2i2y_A Fusion protein consists 99.7 1.9E-17 6.4E-22 110.0 9.3 81 29-114 69-149 (150)
148 2yh0_A Splicing factor U2AF 65 99.7 5.5E-17 1.9E-21 111.6 12.0 85 31-115 112-196 (198)
149 1wg1_A KIAA1579 protein, homol 99.7 3.2E-17 1.1E-21 99.5 9.4 75 32-113 4-78 (88)
150 2dha_A FLJ20171 protein; RRM d 99.7 1E-17 3.5E-22 107.9 7.6 81 30-112 20-104 (123)
151 2xs2_A Deleted in azoospermia- 99.7 2E-17 6.7E-22 103.0 8.1 80 32-114 8-87 (102)
152 1whx_A Hypothetical protein ri 99.7 2.4E-17 8.4E-22 104.3 8.5 76 32-113 9-84 (111)
153 2g4b_A Splicing factor U2AF 65 99.7 7.1E-17 2.4E-21 108.7 11.3 80 32-111 93-172 (172)
154 2hgm_A HNRPF protein, heteroge 99.7 1.4E-17 4.7E-22 107.6 7.0 80 30-112 39-120 (126)
155 2e44_A Insulin-like growth fac 99.7 4.3E-17 1.5E-21 100.3 8.8 79 32-114 14-93 (96)
156 1l3k_A Heterogeneous nuclear r 99.7 1.1E-16 3.9E-21 109.8 11.1 84 30-114 10-93 (196)
157 3zzy_A Polypyrimidine tract-bi 99.7 2.5E-16 8.5E-21 101.9 11.5 79 30-113 25-106 (130)
158 2cjk_A Nuclear polyadenylated 99.7 3.6E-17 1.2E-21 109.7 7.4 80 33-113 87-166 (167)
159 1sjr_A Polypyrimidine tract-bi 99.7 1.4E-16 4.7E-21 106.8 10.1 78 33-114 46-125 (164)
160 4f02_A Polyadenylate-binding p 99.7 2E-16 6.7E-21 110.6 10.8 80 33-114 103-182 (213)
161 2j8a_A Histone-lysine N-methyl 99.7 1.1E-16 3.9E-21 102.6 8.5 78 34-111 3-94 (136)
162 2cq2_A Hypothetical protein LO 99.7 1.5E-16 5E-21 100.8 9.0 80 29-114 21-107 (114)
163 1b7f_A Protein (SXL-lethal pro 99.7 3.2E-16 1.1E-20 105.0 11.1 80 31-110 87-168 (168)
164 1wf0_A TDP-43, TAR DNA-binding 99.7 6.4E-17 2.2E-21 98.1 6.9 77 32-115 4-80 (88)
165 3md3_A Nuclear and cytoplasmic 99.7 3E-16 1E-20 104.8 10.8 80 34-114 1-80 (166)
166 2qfj_A FBP-interacting repress 99.7 1.8E-16 6.2E-21 110.3 9.7 82 32-113 27-108 (216)
167 2hzc_A Splicing factor U2AF 65 99.7 1.9E-16 6.6E-21 95.6 8.4 71 32-109 5-86 (87)
168 3tyt_A Heterogeneous nuclear r 99.7 4E-16 1.4E-20 108.7 10.6 77 32-113 3-80 (205)
169 2dnl_A Cytoplasmic polyadenyla 99.7 1.5E-16 5E-21 101.1 7.7 77 31-110 6-85 (114)
170 3d2w_A TAR DNA-binding protein 99.7 3.8E-16 1.3E-20 95.0 9.2 78 29-115 7-86 (89)
171 1fxl_A Paraneoplastic encephal 99.7 7.3E-16 2.5E-20 103.0 10.8 79 32-110 87-167 (167)
172 3nmr_A Cugbp ELAV-like family 99.7 6.9E-16 2.4E-20 103.9 10.8 82 32-113 2-88 (175)
173 2e5i_A Heterogeneous nuclear r 99.7 8.8E-16 3E-20 98.8 10.7 75 34-114 26-103 (124)
174 3nmr_A Cugbp ELAV-like family 99.7 7E-16 2.4E-20 103.9 10.2 81 30-111 92-175 (175)
175 2pe8_A Splicing factor 45; RRM 99.7 2.1E-15 7.3E-20 94.4 11.4 83 30-112 5-93 (105)
176 2bz2_A Negative elongation fac 99.7 8.9E-16 3E-20 98.5 9.8 80 29-116 35-114 (121)
177 2diu_A KIAA0430 protein; struc 99.7 7E-16 2.4E-20 93.8 8.6 71 34-114 10-85 (96)
178 1fje_B Nucleolin RBD12, protei 99.6 8.6E-16 3E-20 103.8 9.1 78 32-114 98-175 (175)
179 2voo_A Lupus LA protein; RNA-b 99.6 2.2E-15 7.7E-20 104.0 11.0 79 33-113 109-187 (193)
180 2ghp_A U4/U6 snRNA-associated 99.6 1.3E-15 4.3E-20 110.9 9.6 84 30-114 207-292 (292)
181 2cjk_A Nuclear polyadenylated 99.6 1E-15 3.5E-20 102.5 8.3 79 32-112 2-80 (167)
182 3pgw_A U1-A; protein-RNA compl 99.6 3.3E-15 1.1E-19 108.2 11.3 81 31-114 7-91 (282)
183 3smz_A Protein raver-1, ribonu 99.6 6.7E-15 2.3E-19 106.6 12.5 85 30-114 92-176 (284)
184 3smz_A Protein raver-1, ribonu 99.6 4.2E-15 1.4E-19 107.7 11.2 84 31-115 182-266 (284)
185 2adc_A Polypyrimidine tract-bi 99.6 3.4E-15 1.2E-19 105.4 9.9 80 29-113 30-110 (229)
186 2dit_A HIV TAT specific factor 99.6 1.5E-14 5.3E-19 91.4 11.9 83 29-115 11-104 (112)
187 3u1l_A PRE-mRNA-splicing facto 99.6 4.4E-15 1.5E-19 105.4 8.4 79 30-114 131-230 (240)
188 3pgw_A U1-A; protein-RNA compl 99.6 1.2E-14 4.2E-19 105.2 11.0 76 31-111 205-281 (282)
189 1qm9_A Polypyrimidine tract-bi 99.6 4.8E-15 1.6E-19 102.1 7.5 76 33-113 3-79 (198)
190 1fje_B Nucleolin RBD12, protei 99.6 1.4E-15 4.9E-20 102.7 4.4 83 30-114 10-92 (175)
191 3tyt_A Heterogeneous nuclear r 99.6 1.2E-14 3.9E-19 101.3 8.7 78 31-110 121-204 (205)
192 1qm9_A Polypyrimidine tract-bi 99.6 1.7E-14 5.9E-19 99.3 8.7 78 31-113 118-197 (198)
193 2adc_A Polypyrimidine tract-bi 99.6 5.1E-14 1.8E-18 99.3 11.3 79 30-113 148-228 (229)
194 3sde_A Paraspeckle component 1 99.5 2.2E-14 7.5E-19 103.1 9.3 77 30-112 19-95 (261)
195 3sde_A Paraspeckle component 1 99.5 3.4E-14 1.2E-18 102.1 10.0 82 31-113 94-179 (261)
196 2ghp_A U4/U6 snRNA-associated 99.5 3.4E-14 1.2E-18 103.3 9.8 83 31-114 115-198 (292)
197 3v4m_A Splicing factor U2AF 65 99.5 6.1E-14 2.1E-18 87.8 8.9 80 32-111 4-95 (105)
198 2g4b_A Splicing factor U2AF 65 99.5 8.2E-14 2.8E-18 93.6 9.7 76 32-114 3-89 (172)
199 3ue2_A Poly(U)-binding-splicin 99.5 2E-13 6.7E-18 87.1 9.9 80 32-111 19-107 (118)
200 2yh0_A Splicing factor U2AF 65 99.5 1.2E-13 4.1E-18 94.7 9.6 76 32-114 3-89 (198)
201 1jmt_A Splicing factor U2AF 35 99.5 1.7E-14 5.9E-19 90.1 4.2 72 38-110 20-103 (104)
202 2d9o_A DNAJ (HSP40) homolog, s 99.4 9.5E-13 3.2E-17 81.6 9.8 66 43-115 27-92 (100)
203 3tht_A Alkylated DNA repair pr 99.4 7.9E-13 2.7E-17 98.3 8.8 77 28-110 13-96 (345)
204 3s6e_A RNA-binding protein 39; 99.4 9.6E-12 3.3E-16 78.8 10.2 77 31-111 5-91 (114)
205 1owx_A Lupus LA protein, SS-B, 99.2 5.6E-11 1.9E-15 75.7 8.5 77 29-111 14-94 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.2 1E-10 3.4E-15 70.4 8.5 76 31-115 5-88 (91)
207 1ufw_A Synaptojanin 2; RNP dom 99.0 5.9E-10 2E-14 67.4 6.0 74 29-111 11-93 (95)
208 3dxb_A Thioredoxin N-terminall 98.9 4E-09 1.4E-13 73.8 8.3 67 45-111 141-211 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.8 5E-08 1.7E-12 60.3 9.4 72 32-109 20-96 (117)
210 2dhx_A Poly (ADP-ribose) polym 98.2 3.8E-05 1.3E-09 46.9 10.3 76 31-115 6-86 (104)
211 1wey_A Calcipressin 1; structu 97.9 9.2E-05 3.2E-09 45.4 8.2 77 32-114 4-85 (104)
212 1whv_A Poly(A)-specific ribonu 97.8 9.4E-05 3.2E-09 44.7 7.0 56 33-96 15-70 (100)
213 1uw4_A UPF3X; nonsense mediate 97.7 0.00038 1.3E-08 41.8 8.6 69 34-102 2-72 (91)
214 3ctr_A Poly(A)-specific ribonu 97.5 0.00017 5.8E-09 43.7 4.9 55 34-96 6-60 (101)
215 1wwh_A Nucleoporin 35, nucleop 97.3 0.0022 7.4E-08 40.3 8.1 72 32-111 23-95 (119)
216 2l08_A Regulator of nonsense t 96.7 0.0022 7.4E-08 38.8 4.1 68 34-101 10-79 (97)
217 3pq1_A Poly(A) RNA polymerase; 96.5 0.0016 5.4E-08 50.2 3.4 55 33-93 53-107 (464)
218 3p3d_A Nucleoporin 53; structu 95.9 0.012 4E-07 37.5 4.5 76 34-111 8-97 (132)
219 2kn4_A Immunoglobulin G-bindin 95.7 0.016 5.3E-07 37.7 4.6 33 63-97 3-35 (158)
220 2i2y_A Fusion protein consists 95.2 0.0079 2.7E-07 38.9 1.8 41 71-112 9-50 (150)
221 3d45_A Poly(A)-specific ribonu 92.0 0.57 2E-05 36.5 7.3 55 34-96 440-494 (507)
222 2g0c_A ATP-dependent RNA helic 83.4 3.5 0.00012 23.0 5.2 60 43-111 11-75 (76)
223 1h2v_Z 20 kDa nuclear CAP bind 76.5 0.77 2.6E-05 29.4 0.9 15 133-147 135-149 (156)
224 4eyt_A Telomerase associated p 66.5 17 0.00059 21.4 8.2 59 32-98 11-69 (129)
225 4e8u_A Putative uncharacterize 51.6 49 0.0017 21.8 7.9 57 34-93 13-81 (172)
226 2cu1_A Mitogen-activated prote 48.7 41 0.0014 20.1 6.1 64 40-112 23-87 (103)
227 3fut_A Dimethyladenosine trans 29.3 60 0.0021 22.8 3.8 32 34-66 111-142 (271)
228 3pgw_S U1-70K; protein-RNA com 27.8 1.4E+02 0.0046 22.6 5.7 10 85-94 151-160 (437)
229 3uzu_A Ribosomal RNA small sub 26.9 23 0.00079 25.1 1.2 34 34-67 115-148 (279)
230 1qyr_A KSGA, high level kasuga 22.9 69 0.0024 22.1 3.1 30 34-63 91-120 (252)
231 2lfv_A Protein DAMX; cell divi 26.8 20 0.00068 21.6 0.0 60 34-97 26-86 (106)
232 2dzr_A General transcription f 20.9 66 0.0023 19.1 2.2 35 29-63 37-79 (99)
233 3ftd_A Dimethyladenosine trans 20.8 79 0.0027 21.7 3.0 32 34-65 96-127 (249)
234 2q2k_A Hypothetical protein; p 20.6 20 0.0007 18.8 -0.1 21 37-57 42-62 (70)
No 1
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.93 E-value=6.9e-25 Score=146.96 Aligned_cols=89 Identities=28% Similarity=0.425 Sum_probs=82.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 032107 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVS 108 (147)
Q Consensus 29 ~~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 108 (147)
...+.++|||.|||+.+++++|+++|.+||.|..|.++.++.++.+++||||+|.+.++|++||..|++..|.++.|.|+
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eecCCCCCC
Q 032107 109 FANDRPPRS 117 (147)
Q Consensus 109 ~~~~~~~~~ 117 (147)
++++..+..
T Consensus 115 ~a~~~~~~~ 123 (156)
T 1h2v_Z 115 WDAGFKEGR 123 (156)
T ss_dssp EESCCCTTC
T ss_pred ECCCCCCcC
Confidence 998765543
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.89 E-value=1.6e-22 Score=125.94 Aligned_cols=85 Identities=31% Similarity=0.540 Sum_probs=79.1
Q ss_pred hCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 032107 28 FMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRV 107 (147)
Q Consensus 28 ~~~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v 107 (147)
.....+++|||+|||+++++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|++|++.||+..+.|++|.|
T Consensus 14 n~~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V 93 (99)
T 4fxv_A 14 NLYFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKV 93 (99)
T ss_dssp --CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecC
Q 032107 108 SFAND 112 (147)
Q Consensus 108 ~~~~~ 112 (147)
+++++
T Consensus 94 ~~AkP 98 (99)
T 4fxv_A 94 SYARP 98 (99)
T ss_dssp EECCB
T ss_pred EEeeC
Confidence 99864
No 3
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.88 E-value=1.2e-21 Score=128.79 Aligned_cols=88 Identities=27% Similarity=0.536 Sum_probs=81.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 032107 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVS 108 (147)
Q Consensus 29 ~~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 108 (147)
.....++|||+|||.++++++|+++|..||.|..|.++.++.++++++||||+|.+.++|++|++.|++..+.++.|.|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34556899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eecCCCCC
Q 032107 109 FANDRPPR 116 (147)
Q Consensus 109 ~~~~~~~~ 116 (147)
++++...+
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99876544
No 4
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.88 E-value=2.4e-22 Score=130.05 Aligned_cols=88 Identities=26% Similarity=0.510 Sum_probs=81.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 032107 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVS 108 (147)
Q Consensus 29 ~~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 108 (147)
...+.++|||.|||+.+++++|+++|.+||.|..|.++.++.++++++||||+|.+.++|++|++.|++..|.++.|.|+
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34456899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eecCCCCC
Q 032107 109 FANDRPPR 116 (147)
Q Consensus 109 ~~~~~~~~ 116 (147)
++.++.+.
T Consensus 98 ~a~~~~~~ 105 (126)
T 3ex7_B 98 WCFVRGPP 105 (126)
T ss_dssp ESEESSSC
T ss_pred EecCCCCC
Confidence 99876554
No 5
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=1.4e-21 Score=120.37 Aligned_cols=86 Identities=30% Similarity=0.655 Sum_probs=80.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEee
Q 032107 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 110 (147)
Q Consensus 31 ~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 110 (147)
.+.++|||.|||..+++++|+++|.+||.|..+.++.++.++++++||||+|.+.++|++|++.|++..+.++.|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 45689999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 032107 111 NDRPPR 116 (147)
Q Consensus 111 ~~~~~~ 116 (147)
.++...
T Consensus 83 ~~~~~~ 88 (95)
T 2dnz_A 83 TERLDG 88 (95)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 876553
No 6
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.87 E-value=3.8e-21 Score=147.50 Aligned_cols=84 Identities=29% Similarity=0.601 Sum_probs=79.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeec
Q 032107 32 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAN 111 (147)
Q Consensus 32 ~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 111 (147)
+.++|||.|||+.+++++|+++|.+||.|..|.|+.++.+++++|||||+|.+.++|++||..||+..|.|+.|.|.++.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 34799999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred CCCC
Q 032107 112 DRPP 115 (147)
Q Consensus 112 ~~~~ 115 (147)
+...
T Consensus 181 ~~~~ 184 (437)
T 3pgw_S 181 GRTV 184 (437)
T ss_pred CCCC
Confidence 7644
No 7
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.87 E-value=4.6e-21 Score=121.43 Aligned_cols=83 Identities=14% Similarity=0.242 Sum_probs=78.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEee
Q 032107 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 110 (147)
Q Consensus 31 ~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 110 (147)
.+.++|||+|||+.+++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++.||+..+.|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCC
Q 032107 111 NDR 113 (147)
Q Consensus 111 ~~~ 113 (147)
...
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 654
No 8
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.86 E-value=1.7e-20 Score=119.44 Aligned_cols=89 Identities=37% Similarity=0.675 Sum_probs=82.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032107 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
..+.++|||.|||+.+++++|+++|.+||.|..|.++.++.++.+++||||+|.+.++|++||+.|++..+.++.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 032107 110 ANDRPPRSD 118 (147)
Q Consensus 110 ~~~~~~~~~ 118 (147)
+.++.....
T Consensus 92 a~~~~~~~~ 100 (115)
T 2dgo_A 92 ATRKPPAPK 100 (115)
T ss_dssp SSCCCCCSC
T ss_pred ccCCCCCCc
Confidence 987765443
No 9
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.9e-21 Score=119.21 Aligned_cols=86 Identities=31% Similarity=0.607 Sum_probs=80.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEE-EEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032107 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEA-KVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 31 ~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
.+.++|||.|||+.+++++|+++|.+||.|..+ .++.++.++.+++||||+|.+.++|++|+..|++..+.++.|.|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 356899999999999999999999999999999 9999888899999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 032107 110 ANDRPPR 116 (147)
Q Consensus 110 ~~~~~~~ 116 (147)
+.++..+
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9876543
No 10
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=3.6e-21 Score=120.09 Aligned_cols=88 Identities=44% Similarity=0.809 Sum_probs=81.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 032107 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVS 108 (147)
Q Consensus 29 ~~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 108 (147)
...+.++|||.|||+.+++++|+++|.+||.|..+.++.++.++.+++||||+|.+.++|++|++.|++..+.++.|.|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34566899999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred eecCCCCC
Q 032107 109 FANDRPPR 116 (147)
Q Consensus 109 ~~~~~~~~ 116 (147)
++++....
T Consensus 88 ~a~~~~~~ 95 (102)
T 1x5s_A 88 QAGKSSDN 95 (102)
T ss_dssp EEECCCCC
T ss_pred ECCCCCCC
Confidence 99876543
No 11
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=3.7e-21 Score=120.03 Aligned_cols=88 Identities=40% Similarity=0.639 Sum_probs=81.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 032107 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVS 108 (147)
Q Consensus 29 ~~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 108 (147)
...+.++|||.|||+.+++++|+++|.+||.|..+.++.++.++++++||||+|.+.++|++|++.|++..+.++.|.|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred eecCCCCC
Q 032107 109 FANDRPPR 116 (147)
Q Consensus 109 ~~~~~~~~ 116 (147)
++.++..+
T Consensus 88 ~a~~~~~~ 95 (102)
T 2cqb_A 88 LAKPMRIK 95 (102)
T ss_dssp ECCCCCCC
T ss_pred eCCCCCCC
Confidence 99876554
No 12
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=7.1e-21 Score=118.10 Aligned_cols=86 Identities=29% Similarity=0.476 Sum_probs=80.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEee
Q 032107 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 110 (147)
Q Consensus 31 ~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 110 (147)
.+.++|||.|||+.+++++|+++|.+||.|..+.++.++.++.+++||||+|.+.++|++|+..|++..+.++.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45689999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 032107 111 NDRPPR 116 (147)
Q Consensus 111 ~~~~~~ 116 (147)
.++...
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 887554
No 13
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.86 E-value=8.1e-21 Score=115.08 Aligned_cols=83 Identities=37% Similarity=0.647 Sum_probs=76.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEee
Q 032107 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 110 (147)
Q Consensus 31 ~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 110 (147)
.+.++|||+|||..+++++|+++|.+||.|..+.++.++.++.+++||||+|.+.++|++|++.|++..+.|+.|.|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 35579999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred cCC
Q 032107 111 NDR 113 (147)
Q Consensus 111 ~~~ 113 (147)
+++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 865
No 14
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.86 E-value=9.7e-21 Score=120.61 Aligned_cols=87 Identities=28% Similarity=0.502 Sum_probs=81.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032107 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
..+.++|||.|||+++++++|+++|.+||.|..+.++.++.++++++||||+|.+.++|++|++.|++..|.++.|.|++
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 032107 110 ANDRPPR 116 (147)
Q Consensus 110 ~~~~~~~ 116 (147)
++++..+
T Consensus 102 a~~~~~~ 108 (115)
T 2cpz_A 102 KRSKNDS 108 (115)
T ss_dssp CCCSCCC
T ss_pred cCCCCcC
Confidence 9876543
No 15
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=9.6e-21 Score=117.56 Aligned_cols=85 Identities=32% Similarity=0.644 Sum_probs=79.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEee
Q 032107 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 110 (147)
Q Consensus 31 ~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 110 (147)
.+.++|||.|||+.+++++|+++|.+||.|..+.++.++.++++++||||+|.+.++|++|++ |++..+.++.|.|.++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 455899999999999999999999999999999999998889999999999999999999999 9999999999999999
Q ss_pred cCCCCC
Q 032107 111 NDRPPR 116 (147)
Q Consensus 111 ~~~~~~ 116 (147)
.++...
T Consensus 87 ~~~~~~ 92 (99)
T 2dgs_A 87 EPRDSK 92 (99)
T ss_dssp CCCCCC
T ss_pred CCCccc
Confidence 876554
No 16
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=6.8e-21 Score=119.40 Aligned_cols=87 Identities=30% Similarity=0.479 Sum_probs=81.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032107 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
....++|||.|||+.+++++|+++|.+||.|..+.++.++.++.+++||||+|.+.++|++|++.|++..+.++.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 34568999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 032107 110 ANDRPPR 116 (147)
Q Consensus 110 ~~~~~~~ 116 (147)
+.+....
T Consensus 92 a~~~~~~ 98 (105)
T 1x5u_A 92 ASAHNKN 98 (105)
T ss_dssp TTTTSCC
T ss_pred CCCCCcC
Confidence 9876543
No 17
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.1e-20 Score=118.08 Aligned_cols=87 Identities=24% Similarity=0.462 Sum_probs=81.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032107 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
..+.++|||.|||+.+++++|+++|.+||.|..|.++.++.++.+++||||+|.+.++|++|+..|++..+.++.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 34568999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 032107 110 ANDRPPR 116 (147)
Q Consensus 110 ~~~~~~~ 116 (147)
+.++..+
T Consensus 92 a~~~~~~ 98 (103)
T 2cq0_A 92 AKPSTNS 98 (103)
T ss_dssp SSCCCCS
T ss_pred CCCCCCC
Confidence 9876543
No 18
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.85 E-value=1.7e-20 Score=112.65 Aligned_cols=81 Identities=38% Similarity=0.726 Sum_probs=77.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeecCC
Q 032107 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 113 (147)
Q Consensus 34 ~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~~ 113 (147)
.+|||+|||+++++++|+++|.+||.|..+.++.++.++.+++||||+|.+.++|++|+..|++..+.|+.|.|+++.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 68999999999999999999999999999999999889999999999999999999999999999999999999999876
Q ss_pred C
Q 032107 114 P 114 (147)
Q Consensus 114 ~ 114 (147)
+
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 19
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2e-20 Score=119.35 Aligned_cols=84 Identities=44% Similarity=0.697 Sum_probs=78.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032107 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
..+.++|||.|||+.+++++|+++|.+||.|..|.++.++.++++++||||+|.+.++|++||+.+++ .+.++.|.|++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 34568999999999999999999999999999999999988899999999999999999999999998 89999999999
Q ss_pred ecCCC
Q 032107 110 ANDRP 114 (147)
Q Consensus 110 ~~~~~ 114 (147)
+....
T Consensus 93 a~~~~ 97 (116)
T 2cqd_A 93 AYLGA 97 (116)
T ss_dssp STTTC
T ss_pred cccCC
Confidence 97643
No 20
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.2e-20 Score=118.20 Aligned_cols=84 Identities=24% Similarity=0.505 Sum_probs=78.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCC-CccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032107 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERES-GKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 31 ~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~-~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
.+.++|||.|||+.+++++|+++|.+|| |..|.++.++.+ +.+++||||+|.+.++|++|| .|++..+.++.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4558999999999999999999999999 999999998877 899999999999999999999 8999999999999999
Q ss_pred ecCCCCC
Q 032107 110 ANDRPPR 116 (147)
Q Consensus 110 ~~~~~~~ 116 (147)
+.++..+
T Consensus 91 a~~~~~~ 97 (104)
T 1wi8_A 91 ADQAQDK 97 (104)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9887654
No 21
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.85 E-value=1.9e-20 Score=119.62 Aligned_cols=84 Identities=37% Similarity=0.670 Sum_probs=78.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEee
Q 032107 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 110 (147)
Q Consensus 31 ~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 110 (147)
.+.++|||+|||+++++++|+++|.+||.|..|.++.+. ++++++||||+|.+.++|++|++.|++..+.|+.|.|+++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 455899999999999999999999999999999999987 8899999999999999999999999999999999999999
Q ss_pred cCCCC
Q 032107 111 NDRPP 115 (147)
Q Consensus 111 ~~~~~ 115 (147)
+++..
T Consensus 84 ~~~~~ 88 (116)
T 2fy1_A 84 KKPSF 88 (116)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 87643
No 22
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1.7e-20 Score=116.18 Aligned_cols=86 Identities=27% Similarity=0.517 Sum_probs=78.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCC---CCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 032107 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERE---SGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRV 107 (147)
Q Consensus 31 ~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v 107 (147)
.+.++|||.|||+++++++|+++|.+||.|..+.++.++. ++.+++||||+|.+.++|++|+..|++..+.++.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4568999999999999999999999999999999988765 5588999999999999999999999999999999999
Q ss_pred EeecCCCCC
Q 032107 108 SFANDRPPR 116 (147)
Q Consensus 108 ~~~~~~~~~ 116 (147)
+++++....
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999876543
No 23
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.85 E-value=1.6e-21 Score=119.54 Aligned_cols=82 Identities=18% Similarity=0.451 Sum_probs=75.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccC-CeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhc-CCeeCCeEEEEEeec
Q 032107 34 TKLFVGGLSWGTDDSSLKEAFSNFG-DITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMD-GQELNGRNIRVSFAN 111 (147)
Q Consensus 34 ~~i~v~nlp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~-~~~~~g~~l~v~~~~ 111 (147)
++|||+|||+++++++|+++|++|| .|..|++++++.++.++|||||+|.+.++|++||+.++ +..+.|++|.|+++.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 6899999999999999999999999 79999999999999999999999999999999999774 567999999999998
Q ss_pred CCCC
Q 032107 112 DRPP 115 (147)
Q Consensus 112 ~~~~ 115 (147)
+++.
T Consensus 82 ~~~~ 85 (91)
T 2lxi_A 82 PKPK 85 (91)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7654
No 24
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=8.3e-21 Score=119.19 Aligned_cols=86 Identities=27% Similarity=0.531 Sum_probs=80.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032107 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
..+.++|||+|||+.+++++|+++|.+||.|..+.++.++.++.+++||||+|.+.++|++|+..|++..+.|+.|.|++
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 34567899999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 032107 110 ANDRPP 115 (147)
Q Consensus 110 ~~~~~~ 115 (147)
+.++++
T Consensus 100 a~~~~~ 105 (106)
T 1p27_B 100 CFVRGP 105 (106)
T ss_dssp SEESSC
T ss_pred ecCCCC
Confidence 987654
No 25
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=2.2e-20 Score=116.07 Aligned_cols=86 Identities=30% Similarity=0.606 Sum_probs=79.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032107 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
..+.++|||.|||+.+++++|+++|.+||.|..+.++.++ ++++++||||+|.+.++|++|++.|++..+.++.|.|.+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999987 899999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 032107 110 ANDRPPR 116 (147)
Q Consensus 110 ~~~~~~~ 116 (147)
+++++.+
T Consensus 93 a~~~~~~ 99 (100)
T 2do4_A 93 SNSGPSS 99 (100)
T ss_dssp CCCCSCC
T ss_pred CCCCCCC
Confidence 9876543
No 26
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=8.1e-21 Score=118.71 Aligned_cols=87 Identities=31% Similarity=0.546 Sum_probs=80.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032107 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
..+.++|||.|||+.+++++|+++|.+||.|..+.++.++.++.+++||||+|.+.++|++|+..|++..+.++.|.|++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34568999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 032107 110 ANDRPPR 116 (147)
Q Consensus 110 ~~~~~~~ 116 (147)
++...+.
T Consensus 90 a~~~~~~ 96 (103)
T 2dnm_A 90 ARYGRRD 96 (103)
T ss_dssp CSSCCSC
T ss_pred CCcCCCC
Confidence 9875443
No 27
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.85 E-value=1.6e-20 Score=113.27 Aligned_cols=82 Identities=41% Similarity=0.682 Sum_probs=77.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032107 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
..+.++|||+|||+.+++++|+++|.+||.|..+.++.++.++.+++||||+|.+.++|++|++.|++..+.|+.|.|++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred ec
Q 032107 110 AN 111 (147)
Q Consensus 110 ~~ 111 (147)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 28
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.85 E-value=2.5e-20 Score=116.48 Aligned_cols=85 Identities=25% Similarity=0.530 Sum_probs=78.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032107 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
..+.++|||.|||+.+++++|+++|.+|+ |..|.++.++.++++++||||+|.+.++|++|+ .|++..+.++.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 34568999999999999999999999996 999999999889999999999999999999999 7999999999999999
Q ss_pred ecCCCCC
Q 032107 110 ANDRPPR 116 (147)
Q Consensus 110 ~~~~~~~ 116 (147)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2dng_A 90 AEGRKQD 96 (103)
T ss_dssp CCCCCCC
T ss_pred ecCCCCC
Confidence 9876543
No 29
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.85 E-value=2e-21 Score=137.65 Aligned_cols=80 Identities=35% Similarity=0.590 Sum_probs=75.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccC--CeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032107 32 SQTKLFVGGLSWGTDDSSLKEAFSNFG--DITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 32 ~~~~i~v~nlp~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
..++|||+|||+.+++++|+++|.+|| .|..|.|+.++.+++++|||||+|.+.++|++||+.|++..|.++.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 557899999999999999999999999 999999999999999999999999999999999999999999999999998
Q ss_pred ec
Q 032107 110 AN 111 (147)
Q Consensus 110 ~~ 111 (147)
++
T Consensus 147 a~ 148 (229)
T 3q2s_C 147 VN 148 (229)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 30
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=2.3e-20 Score=116.60 Aligned_cols=85 Identities=40% Similarity=0.667 Sum_probs=79.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032107 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
..+.++|||.|||+.+++++|+++|.+||.|..+.++.+ ++.+++||||+|.+.++|++|+..|++..+.++.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 345689999999999999999999999999999999887 788999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 032107 110 ANDRPPR 116 (147)
Q Consensus 110 ~~~~~~~ 116 (147)
+.++..+
T Consensus 90 a~~~~~~ 96 (103)
T 2d9p_A 90 AQRKEER 96 (103)
T ss_dssp CSSCCCC
T ss_pred ecccccC
Confidence 9887654
No 31
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.84 E-value=4.7e-21 Score=118.29 Aligned_cols=79 Identities=23% Similarity=0.444 Sum_probs=74.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCC--eeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCC----eeCCeEEEE
Q 032107 34 TKLFVGGLSWGTDDSSLKEAFSNFGD--ITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQ----ELNGRNIRV 107 (147)
Q Consensus 34 ~~i~v~nlp~~~~~~~l~~~f~~~g~--i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~----~~~g~~l~v 107 (147)
.+|||+|||+.+|+++|+++|++||. +..|++++++.+++++|||||+|.+.++|++|++.|++. .+.|++|.|
T Consensus 10 ~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V 89 (95)
T 2lkz_A 10 DTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGV 89 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEE
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEE
Confidence 68999999999999999999999995 678999999999999999999999999999999999987 589999999
Q ss_pred EeecC
Q 032107 108 SFAND 112 (147)
Q Consensus 108 ~~~~~ 112 (147)
+++++
T Consensus 90 ~~Aks 94 (95)
T 2lkz_A 90 DFAKS 94 (95)
T ss_dssp EECCC
T ss_pred EEccC
Confidence 99875
No 32
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.84 E-value=1.6e-20 Score=117.87 Aligned_cols=88 Identities=35% Similarity=0.522 Sum_probs=80.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCee---CCeEE
Q 032107 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQEL---NGRNI 105 (147)
Q Consensus 29 ~~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~---~g~~l 105 (147)
...+.++|||.|||..+++++|+++|.+||.|..|.++.++.++++++||||+|.+.++|++|++.|++..+ .++.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 344568999999999999999999999999999999999988899999999999999999999999999988 89999
Q ss_pred EEEeecCCCCC
Q 032107 106 RVSFANDRPPR 116 (147)
Q Consensus 106 ~v~~~~~~~~~ 116 (147)
.|.++.+...+
T Consensus 89 ~v~~a~~~~~~ 99 (106)
T 2dgp_A 89 QVKPADSESRG 99 (106)
T ss_dssp EEEECCCCSCC
T ss_pred EEEECCccccc
Confidence 99999876543
No 33
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=2.9e-20 Score=116.85 Aligned_cols=87 Identities=25% Similarity=0.559 Sum_probs=80.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEec-CCCCccceEEEEEeCCHHHHHHHHHHh-cCCeeCCeEEEE
Q 032107 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITE-RESGKSRGFGFVTYDSNESASSAQSAM-DGQELNGRNIRV 107 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~g~afv~f~~~~~a~~ai~~l-~~~~~~g~~l~v 107 (147)
....++|||.|||+.+++++|+++|.+||.|..|.++.+ +.++.+++||||+|.+.++|++|+..| ++..+.++.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 345689999999999999999999999999999999988 678999999999999999999999999 999999999999
Q ss_pred EeecCCCCC
Q 032107 108 SFANDRPPR 116 (147)
Q Consensus 108 ~~~~~~~~~ 116 (147)
.++.+....
T Consensus 92 ~~a~~~~~~ 100 (107)
T 2cph_A 92 EWADSEVTV 100 (107)
T ss_dssp EECCCCCCC
T ss_pred EeCCCCCCC
Confidence 999876554
No 34
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.7e-19 Score=114.58 Aligned_cols=86 Identities=31% Similarity=0.501 Sum_probs=78.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032107 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
....++|||.|||+.+++++|+++|.+||.|..+.++.++ ++++++||||+|.+.++|++|+..|++..+.++.|.|++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 3456899999999999999999999999999999999886 588999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 032107 110 ANDRPPR 116 (147)
Q Consensus 110 ~~~~~~~ 116 (147)
++...++
T Consensus 91 a~~~~~~ 97 (114)
T 2do0_A 91 DERALPK 97 (114)
T ss_dssp CSCCCCC
T ss_pred cccCCCC
Confidence 9865444
No 35
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.6e-20 Score=118.23 Aligned_cols=87 Identities=25% Similarity=0.515 Sum_probs=80.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCee--------EEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeC
Q 032107 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDIT--------EAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELN 101 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~--------~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~ 101 (147)
..+.++|||.|||+.+++++|+++|.+||.|. .+.++.++.++++++||||+|.+.++|++||+.|++..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 34568999999999999999999999999998 6999998888999999999999999999999999999999
Q ss_pred CeEEEEEeecCCCCC
Q 032107 102 GRNIRVSFANDRPPR 116 (147)
Q Consensus 102 g~~l~v~~~~~~~~~ 116 (147)
++.|.|.+++++...
T Consensus 92 g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 92 GSKLKVSLARKKPPM 106 (113)
T ss_dssp TEECEEECSSCCCCS
T ss_pred CCEEEEEECCCCCCC
Confidence 999999999876554
No 36
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=3.6e-20 Score=117.10 Aligned_cols=87 Identities=25% Similarity=0.531 Sum_probs=80.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhc------CCeeCCe
Q 032107 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMD------GQELNGR 103 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~------~~~~~g~ 103 (147)
..+.++|||.|||+.+++++|+++|.+||.|..|.++.++.++.+++||||+|.+.++|++||..|+ +..+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 3456899999999999999999999999999999999998889999999999999999999999999 9999999
Q ss_pred EEEEEeecCCCCC
Q 032107 104 NIRVSFANDRPPR 116 (147)
Q Consensus 104 ~l~v~~~~~~~~~ 116 (147)
.|.|.++.++...
T Consensus 92 ~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 92 QLKVDLAVTRDEA 104 (111)
T ss_dssp EEEEECCCCCCCC
T ss_pred EEEEEECCCCccC
Confidence 9999999876543
No 37
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=2.5e-20 Score=116.62 Aligned_cols=86 Identities=30% Similarity=0.515 Sum_probs=79.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhc-cCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCe-eCCeEEEE
Q 032107 30 SQSQTKLFVGGLSWGTDDSSLKEAFSN-FGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQE-LNGRNIRV 107 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~-~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~-~~g~~l~v 107 (147)
..+.++|||+|||+.+++++|+++|.+ ||.|..+.++.+. ++.+++||||+|.+.++|++|++.|++.. +.|+.|.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 345689999999999999999999999 9999999999997 89999999999999999999999999999 99999999
Q ss_pred EeecCCCCC
Q 032107 108 SFANDRPPR 116 (147)
Q Consensus 108 ~~~~~~~~~ 116 (147)
.++.++..+
T Consensus 85 ~~a~~~~~~ 93 (104)
T 2dhg_A 85 SVAIPKASR 93 (104)
T ss_dssp CBCCCCCSC
T ss_pred EEccCCCcC
Confidence 999876544
No 38
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=3.4e-20 Score=114.06 Aligned_cols=83 Identities=36% Similarity=0.593 Sum_probs=78.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032107 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
+.+.++|||.|||+.+++++|+++|.+||.|..+.++.++.++.+++||||+|.+.++|++|+..|++..+.+++|.|++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 44568999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ecC
Q 032107 110 AND 112 (147)
Q Consensus 110 ~~~ 112 (147)
+++
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 864
No 39
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.84 E-value=3.5e-20 Score=112.41 Aligned_cols=84 Identities=26% Similarity=0.493 Sum_probs=77.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCc-cceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEee
Q 032107 32 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGK-SRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 110 (147)
Q Consensus 32 ~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~-~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 110 (147)
..++|||+|||+++++++|+++|.+||.|..+.++.+..++. +++||||+|.+.++|++|+..|++..+.|+.|.|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 457999999999999999999999999999999988876655 8899999999999999999999999999999999999
Q ss_pred cCCCC
Q 032107 111 NDRPP 115 (147)
Q Consensus 111 ~~~~~ 115 (147)
.++.+
T Consensus 83 ~~~~~ 87 (88)
T 4a8x_A 83 LAPWP 87 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87554
No 40
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1e-19 Score=113.68 Aligned_cols=85 Identities=27% Similarity=0.504 Sum_probs=77.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032107 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
....++|||.|||+.+++++|+++|.+||.|..|.++.+..+ +++||||+|.+.++|++|+..|++..+.++.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 345689999999999999999999999999999999887443 688999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 032107 110 ANDRPPR 116 (147)
Q Consensus 110 ~~~~~~~ 116 (147)
+.++..+
T Consensus 90 a~~~~~~ 96 (103)
T 2cqi_A 90 ATTPSSQ 96 (103)
T ss_dssp CCCTTCC
T ss_pred CCCCccc
Confidence 9876554
No 41
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.84 E-value=5.5e-21 Score=116.78 Aligned_cols=82 Identities=34% Similarity=0.560 Sum_probs=72.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccC--CeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeec
Q 032107 34 TKLFVGGLSWGTDDSSLKEAFSNFG--DITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAN 111 (147)
Q Consensus 34 ~~i~v~nlp~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 111 (147)
.+|||+|||+++++++|+++|.+|| .|..+.++.++.+++++|||||+|.+.++|++|++.|++..+.|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999998899999999999999999999999999999999999999998
Q ss_pred CCCC
Q 032107 112 DRPP 115 (147)
Q Consensus 112 ~~~~ 115 (147)
+.++
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7654
No 42
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.84 E-value=2.8e-20 Score=117.57 Aligned_cols=87 Identities=26% Similarity=0.555 Sum_probs=81.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032107 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
..+.++|||+|||+.+++++|+++|.+||.|..+.++.++.++.+++||||+|.+.++|++|+..|++..+.|+.|.|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34568999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 032107 110 ANDRPPR 116 (147)
Q Consensus 110 ~~~~~~~ 116 (147)
+.+++++
T Consensus 103 a~~~~~~ 109 (110)
T 1oo0_B 103 CFVKGPK 109 (110)
T ss_dssp SEESSCC
T ss_pred cccCCCC
Confidence 9876543
No 43
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=3.7e-20 Score=113.76 Aligned_cols=82 Identities=24% Similarity=0.554 Sum_probs=77.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032107 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
..+.++|||.|||+.+++++|+++|.+||.|..+.++.++.++.+++||||+|.+.++|++|++.|++..+.++.|.|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 44568999999999999999999999999999999999988899999999999999999999999999999999999998
Q ss_pred ec
Q 032107 110 AN 111 (147)
Q Consensus 110 ~~ 111 (147)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 44
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.83 E-value=9e-20 Score=114.23 Aligned_cols=85 Identities=29% Similarity=0.467 Sum_probs=78.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCC---eEEEE
Q 032107 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNG---RNIRV 107 (147)
Q Consensus 31 ~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g---~~l~v 107 (147)
...++|||+|||+.+++++|+++|.+||.|..+.++.++ ++++++||||+|.+.++|++|++.|++..+.+ +.|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 456899999999999999999999999999999999986 78999999999999999999999999999988 99999
Q ss_pred EeecCCCCC
Q 032107 108 SFANDRPPR 116 (147)
Q Consensus 108 ~~~~~~~~~ 116 (147)
.++.+...+
T Consensus 92 ~~a~~~~~~ 100 (105)
T 2dnh_A 92 KFADTDKES 100 (105)
T ss_dssp EESCSSCCC
T ss_pred EECccCccc
Confidence 999876654
No 45
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.3e-19 Score=114.26 Aligned_cols=83 Identities=20% Similarity=0.449 Sum_probs=74.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032107 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
..+.++|||.|||+.+++++|+++|.+||.|..+.+..+ +.+++||||+|.+.++|++|++.|++..+.++.|.|++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 445689999999999999999999999999999988543 45789999999999999999999999999999999999
Q ss_pred ecCCCC
Q 032107 110 ANDRPP 115 (147)
Q Consensus 110 ~~~~~~ 115 (147)
+++...
T Consensus 96 a~~~~~ 101 (109)
T 1x4a_A 96 PRSGRG 101 (109)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 987543
No 46
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.83 E-value=5.9e-20 Score=113.40 Aligned_cols=82 Identities=20% Similarity=0.537 Sum_probs=78.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 032107 33 QTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAND 112 (147)
Q Consensus 33 ~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~ 112 (147)
.++|||+|||..+++++|+++|.+||.|..+.++.++.++.+++||||+|.+.++|++|++.|++..+.|+.|.|.++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 47999999999999999999999999999999999988899999999999999999999999999999999999999986
Q ss_pred CC
Q 032107 113 RP 114 (147)
Q Consensus 113 ~~ 114 (147)
+.
T Consensus 82 ~~ 83 (96)
T 2x1f_A 82 SD 83 (96)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 47
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2e-19 Score=112.30 Aligned_cols=85 Identities=29% Similarity=0.586 Sum_probs=77.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032107 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
..+.++|||.|||+.+++++|+++|.+||.|..|.++.+.. .+++||||+|.+.++|++|+..|++..+.++.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 44568999999999999999999999999999999988753 3789999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 032107 110 ANDRPPR 116 (147)
Q Consensus 110 ~~~~~~~ 116 (147)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cq3_A 90 ATARVMT 96 (103)
T ss_dssp CCSSCCC
T ss_pred cccCCCC
Confidence 9877554
No 48
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.83 E-value=7.8e-20 Score=116.55 Aligned_cols=81 Identities=32% Similarity=0.587 Sum_probs=74.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 032107 33 QTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAND 112 (147)
Q Consensus 33 ~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~ 112 (147)
..+|||+|||+.+++++|+++|.+||.|..+.++.+. +.++|||||+|.+.++|++||+.|++..+.|+.|.|.++.+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4689999999999999999999999999999999885 45789999999999999999999999999999999999887
Q ss_pred CCC
Q 032107 113 RPP 115 (147)
Q Consensus 113 ~~~ 115 (147)
+..
T Consensus 83 ~~~ 85 (115)
T 4f25_A 83 RKE 85 (115)
T ss_dssp CCC
T ss_pred ccc
Confidence 554
No 49
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.83 E-value=5e-20 Score=116.24 Aligned_cols=86 Identities=31% Similarity=0.671 Sum_probs=80.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 032107 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVS 108 (147)
Q Consensus 29 ~~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 108 (147)
...+.++|||+|||+.+++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|++|++.|++..+.|+.|.|+
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34456899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eecCCC
Q 032107 109 FANDRP 114 (147)
Q Consensus 109 ~~~~~~ 114 (147)
+++++.
T Consensus 102 ~a~~k~ 107 (108)
T 2jrs_A 102 HVTERT 107 (108)
T ss_dssp CSCSSC
T ss_pred EcccCC
Confidence 998653
No 50
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=3.8e-20 Score=116.00 Aligned_cols=86 Identities=30% Similarity=0.659 Sum_probs=79.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032107 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
..+.++|||.|||+.+++++|+++|.+||.|..|.++.++.++.+++||||+|.+.++|++||.. ++..|.++.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 44568999999999999999999999999999999999988999999999999999999999998 99999999999999
Q ss_pred ecCCCCC
Q 032107 110 ANDRPPR 116 (147)
Q Consensus 110 ~~~~~~~ 116 (147)
+.++...
T Consensus 92 a~~~~~~ 98 (105)
T 2dh8_A 92 CTPRGMQ 98 (105)
T ss_dssp SCCSSCC
T ss_pred ccCCCCC
Confidence 9876543
No 51
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.83 E-value=6.9e-20 Score=123.69 Aligned_cols=87 Identities=26% Similarity=0.555 Sum_probs=79.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032107 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
..+.++|||.|||+.+++++|+++|.+||.|..|.++.++.++.+++||||+|.+.++|++||..|++..|.|+.|.|.+
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34557899999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 032107 110 ANDRPPR 116 (147)
Q Consensus 110 ~~~~~~~ 116 (147)
+.+..++
T Consensus 149 a~~~~~~ 155 (165)
T 1rk8_A 149 CFVKGPK 155 (165)
T ss_dssp SEECC--
T ss_pred ecCCCCC
Confidence 9876554
No 52
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.83 E-value=1.3e-19 Score=113.85 Aligned_cols=83 Identities=29% Similarity=0.529 Sum_probs=77.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 032107 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVS 108 (147)
Q Consensus 29 ~~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 108 (147)
...+.++|||.|||+.+++++|+++|.+||.|..+.++.++ ++++++||||+|.+.++|++|++.|++..+.|+.|.|+
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34566899999999999999999999999999999999987 89999999999999999999999999999999999999
Q ss_pred eecC
Q 032107 109 FAND 112 (147)
Q Consensus 109 ~~~~ 112 (147)
++++
T Consensus 104 ~a~s 107 (107)
T 3ulh_A 104 LVTS 107 (107)
T ss_dssp EECC
T ss_pred EeCC
Confidence 9863
No 53
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.83 E-value=8.9e-20 Score=113.19 Aligned_cols=83 Identities=34% Similarity=0.521 Sum_probs=78.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeE--------EEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCee
Q 032107 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITE--------AKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQEL 100 (147)
Q Consensus 29 ~~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~--------~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~ 100 (147)
.+...++|||+|||+.+++++|+++|.+||.|.. +.++.++.++.++|||||+|.+.++|++|++.|++..+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 4456689999999999999999999999999999 99999988999999999999999999999999999999
Q ss_pred CCeEEEEEeec
Q 032107 101 NGRNIRVSFAN 111 (147)
Q Consensus 101 ~g~~l~v~~~~ 111 (147)
.|+.|+|++++
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999999874
No 54
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.83 E-value=1e-19 Score=111.96 Aligned_cols=83 Identities=34% Similarity=0.535 Sum_probs=76.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 032107 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVS 108 (147)
Q Consensus 29 ~~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 108 (147)
...+.++|||.|||+.+++++|+++|.+||.|..+.++.++. +++++||||+|.+.++|++|++.|++..+.++.|.|+
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 344568999999999999999999999999999999999865 8899999999999999999999999999999999999
Q ss_pred eecC
Q 032107 109 FAND 112 (147)
Q Consensus 109 ~~~~ 112 (147)
++++
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9864
No 55
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=8.7e-20 Score=113.15 Aligned_cols=84 Identities=24% Similarity=0.469 Sum_probs=78.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCee-EEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeE----
Q 032107 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDIT-EAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRN---- 104 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~-~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~---- 104 (147)
....++|||+|||+.+++++|+++|.+||.|. .+.++.++.++.+++||||+|.+.++|++|++.|++..+.++.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34568999999999999999999999999999 9999999889999999999999999999999999999999999
Q ss_pred EEEEeecCC
Q 032107 105 IRVSFANDR 113 (147)
Q Consensus 105 l~v~~~~~~ 113 (147)
|+|.++++.
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 999998764
No 56
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=2.2e-19 Score=113.22 Aligned_cols=79 Identities=27% Similarity=0.417 Sum_probs=72.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCC-----eEE
Q 032107 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNG-----RNI 105 (147)
Q Consensus 31 ~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g-----~~l 105 (147)
...++|||.|||+.+++++|+++|.+||.|..+.++.+ +||||+|.+.++|++||+.||+..|.+ +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 45689999999999999999999999999999988775 699999999999999999999999999 999
Q ss_pred EEEeecCCCCC
Q 032107 106 RVSFANDRPPR 116 (147)
Q Consensus 106 ~v~~~~~~~~~ 116 (147)
.|+++.++.+.
T Consensus 86 ~V~~a~~~~~~ 96 (108)
T 1x4c_A 86 RVKVDGPRSPS 96 (108)
T ss_dssp EEEESSCCSCC
T ss_pred EEEeCCCCCCC
Confidence 99999986543
No 57
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.83 E-value=1.2e-19 Score=110.30 Aligned_cols=80 Identities=23% Similarity=0.561 Sum_probs=76.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 032107 33 QTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAND 112 (147)
Q Consensus 33 ~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~ 112 (147)
.++|||+|||+.+++++|+++|.+||.|..+.++.++.++++++||||+|.+.++|++|+ .|++..+.|+.|.|.++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 479999999999999999999999999999999999889999999999999999999999 8999999999999999876
Q ss_pred C
Q 032107 113 R 113 (147)
Q Consensus 113 ~ 113 (147)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 58
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.83 E-value=2.6e-19 Score=111.83 Aligned_cols=79 Identities=29% Similarity=0.567 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEee
Q 032107 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 110 (147)
Q Consensus 31 ~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 110 (147)
.+.++|||.|||+.+++++|+++|.+||.|..+.+++ +||||+|.+.++|++|+..|++..+.++.|.|.++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 4558999999999999999999999999999998763 49999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 032107 111 NDRPPRS 117 (147)
Q Consensus 111 ~~~~~~~ 117 (147)
+++....
T Consensus 81 ~~~~~~~ 87 (103)
T 2dgu_A 81 KPPDQKR 87 (103)
T ss_dssp CCCCCCC
T ss_pred CCCcccc
Confidence 8765543
No 59
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=1.2e-19 Score=113.11 Aligned_cols=85 Identities=39% Similarity=0.693 Sum_probs=76.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 032107 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVS 108 (147)
Q Consensus 29 ~~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 108 (147)
...+.++|||.|||+.+++++|+++|.++ ..+.++.++.++++++||||+|.+.++|++||..|++..|.++.|.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34566899999999999999999999977 367788887889999999999999999999999999999999999999
Q ss_pred eecCCCCC
Q 032107 109 FANDRPPR 116 (147)
Q Consensus 109 ~~~~~~~~ 116 (147)
+++++..+
T Consensus 88 ~a~~~~~~ 95 (102)
T 2fc8_A 88 WAKPKGEG 95 (102)
T ss_dssp ECCCCCSS
T ss_pred EecCCCCC
Confidence 99876543
No 60
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=9.4e-20 Score=116.18 Aligned_cols=83 Identities=35% Similarity=0.613 Sum_probs=78.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 032107 33 QTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAND 112 (147)
Q Consensus 33 ~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~ 112 (147)
.++|||.|||+.+++++|+++|.+||.|..|.++.++.++++++||||+|.+.++|++||.. ++..|.|+.|.|.++.+
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 37999999999999999999999999999999999988899999999999999999999997 99999999999999987
Q ss_pred CCCC
Q 032107 113 RPPR 116 (147)
Q Consensus 113 ~~~~ 116 (147)
+...
T Consensus 106 ~~~~ 109 (116)
T 1x4b_A 106 REES 109 (116)
T ss_dssp CCCC
T ss_pred CccC
Confidence 6543
No 61
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.82 E-value=4.7e-20 Score=117.87 Aligned_cols=83 Identities=29% Similarity=0.525 Sum_probs=77.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 032107 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVS 108 (147)
Q Consensus 29 ~~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 108 (147)
...+.++|||+|||+++++++|+++|.+||.|..+.++.++.++++++||||+|.+.++|++|++.||+..+.|+.|+|+
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34566899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred eec
Q 032107 109 FAN 111 (147)
Q Consensus 109 ~~~ 111 (147)
+++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 874
No 62
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.82 E-value=3.5e-20 Score=120.48 Aligned_cols=87 Identities=36% Similarity=0.620 Sum_probs=81.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 032107 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVS 108 (147)
Q Consensus 29 ~~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 108 (147)
.+.+.++|||.|||+.+++++|+++|.+||.|..|.++.++.+++.++||||+|.+.++|++||+.|++..|.|+.|.|+
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44566899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred eecCCCC
Q 032107 109 FANDRPP 115 (147)
Q Consensus 109 ~~~~~~~ 115 (147)
++.++.+
T Consensus 122 ~a~~~~p 128 (129)
T 2kxn_B 122 FSITKRP 128 (129)
T ss_dssp CCSSSSC
T ss_pred EecCCCC
Confidence 9987654
No 63
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.82 E-value=1.4e-19 Score=110.78 Aligned_cols=84 Identities=32% Similarity=0.515 Sum_probs=77.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032107 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
..+.++|||.|||+.+++++|+++|.+||.|..+.++.+ ++++++||||+|.+.++|++|+..|++..+.++.|.|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 345689999999999999999999999999999988873 688999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 032107 110 ANDRPP 115 (147)
Q Consensus 110 ~~~~~~ 115 (147)
+++...
T Consensus 83 a~~~~~ 88 (92)
T 2dgv_A 83 DRNASG 88 (92)
T ss_dssp CSCCSS
T ss_pred cCCCCC
Confidence 987654
No 64
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.5e-19 Score=111.68 Aligned_cols=82 Identities=16% Similarity=0.268 Sum_probs=75.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 032107 31 QSQTKLFVGGLSWGTDDSSLK----EAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIR 106 (147)
Q Consensus 31 ~~~~~i~v~nlp~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~ 106 (147)
.+.++|||+|||+.+++++|+ ++|.+||.|..+.++.++.+ ++||||+|.+.++|++|++.||+..+.|+.|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 456799999999999999999 99999999999999987655 78999999999999999999999999999999
Q ss_pred EEeecCCCC
Q 032107 107 VSFANDRPP 115 (147)
Q Consensus 107 v~~~~~~~~ 115 (147)
|+++++...
T Consensus 84 V~~a~~~~~ 92 (96)
T 2dgx_A 84 VSLATGASG 92 (96)
T ss_dssp EEECCCSSC
T ss_pred EEEcCCCCC
Confidence 999987654
No 65
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=2.7e-19 Score=109.32 Aligned_cols=83 Identities=16% Similarity=0.340 Sum_probs=77.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032107 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
....++|||+|||+.+++++|+++|.+| .|..+.++.+ .+++++|||||+|.+.++|++|+. |++..+.++.|.|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 3456899999999999999999999999 9999999998 789999999999999999999999 999999999999999
Q ss_pred ecCCCC
Q 032107 110 ANDRPP 115 (147)
Q Consensus 110 ~~~~~~ 115 (147)
+++++.
T Consensus 84 a~~~~~ 89 (91)
T 2dgw_A 84 EKSGPS 89 (91)
T ss_dssp ESSCCC
T ss_pred CCcCCC
Confidence 987643
No 66
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.2e-19 Score=110.82 Aligned_cols=86 Identities=31% Similarity=0.586 Sum_probs=78.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 032107 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVS 108 (147)
Q Consensus 29 ~~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 108 (147)
...+.++|||.|||+.+++++|+++|.+||.|..+.++.++.++++++||||+|.+.++|++||. ++..+.|+.|.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEE
Confidence 34456899999999999999999999999999999999998899999999999999999999999 4678999999999
Q ss_pred eecCCCCC
Q 032107 109 FANDRPPR 116 (147)
Q Consensus 109 ~~~~~~~~ 116 (147)
++.++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cqg_A 89 LPNSKQSQ 96 (103)
T ss_dssp CCCTTCCC
T ss_pred ecCCCCcC
Confidence 99876543
No 67
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.1e-19 Score=113.47 Aligned_cols=82 Identities=16% Similarity=0.274 Sum_probs=74.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032107 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
+...++|||.|||+++++++|+++|.+||. ..|.++.++ +++++|||||+|.+.++|++||+ +++..+.++.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 445689999999999999999999999995 599999986 89999999999999999999996 799999999999999
Q ss_pred ecCCC
Q 032107 110 ANDRP 114 (147)
Q Consensus 110 ~~~~~ 114 (147)
+...+
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87654
No 68
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.82 E-value=1.4e-19 Score=114.31 Aligned_cols=88 Identities=34% Similarity=0.629 Sum_probs=76.8
Q ss_pred hCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 032107 28 FMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRV 107 (147)
Q Consensus 28 ~~~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v 107 (147)
....+.++|||+|||+++++++|+++|.+||.|..|.++.++.++.++|||||+|.+.++|++|+..+ +..+.|+.|.|
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V 98 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDP 98 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEE
Confidence 34556789999999999999999999999999999999999888999999999999999999999976 59999999999
Q ss_pred EeecCCCCC
Q 032107 108 SFANDRPPR 116 (147)
Q Consensus 108 ~~~~~~~~~ 116 (147)
.++.++..+
T Consensus 99 ~~a~~~~~~ 107 (109)
T 2rs2_A 99 KVAFPRRAQ 107 (109)
T ss_dssp EECCCCCCC
T ss_pred EEccCCCCC
Confidence 999876543
No 69
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=8.3e-20 Score=113.04 Aligned_cols=84 Identities=14% Similarity=0.305 Sum_probs=77.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEee
Q 032107 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 110 (147)
Q Consensus 31 ~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 110 (147)
...++|||.|||+.+++++|+++|.+||.|..+.++.++.++++++||||+|.+.++|++|++.|++..+.++.|.|+++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 34578999999999999999999999999988888888888999999999999999999999999999999999999998
Q ss_pred cCCC
Q 032107 111 NDRP 114 (147)
Q Consensus 111 ~~~~ 114 (147)
..+.
T Consensus 93 ~~~~ 96 (98)
T 2cqp_A 93 SGPS 96 (98)
T ss_dssp SCSS
T ss_pred CCCC
Confidence 7543
No 70
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.82 E-value=3.5e-19 Score=107.87 Aligned_cols=80 Identities=34% Similarity=0.704 Sum_probs=74.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032107 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
..+.++|||+|||+.+++++|+++|.+||.|..+.++.++.+++++|||||+|.+.++|++|++ +++..+.|+.|.|++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 4466899999999999999999999999999999999998899999999999999999999997 588899999999987
Q ss_pred e
Q 032107 110 A 110 (147)
Q Consensus 110 ~ 110 (147)
+
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 71
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.82 E-value=8.5e-20 Score=117.63 Aligned_cols=83 Identities=25% Similarity=0.572 Sum_probs=77.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeec
Q 032107 32 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAN 111 (147)
Q Consensus 32 ~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 111 (147)
+.++|||+|||+.+++++|+++|.+||.|..+.++.++.++.+++||||+|.+.++|++|+ .|++..+.|+.|.|.+++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3589999999999999999999999999999999999889999999999999999999999 799999999999999998
Q ss_pred CCCC
Q 032107 112 DRPP 115 (147)
Q Consensus 112 ~~~~ 115 (147)
+..+
T Consensus 114 ~~~~ 117 (124)
T 2jwn_A 114 TNMP 117 (124)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 6543
No 72
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.81 E-value=7e-20 Score=112.70 Aligned_cols=81 Identities=16% Similarity=0.305 Sum_probs=75.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeec
Q 032107 32 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAN 111 (147)
Q Consensus 32 ~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 111 (147)
..++|||.|||+.+++++|+++|.+||.|..+.++.++.++++++||||+|.+.++|++|++.|++..+.++.|.|+++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 34899999999999999999999999999888888888889999999999999999999999999999999999999876
Q ss_pred C
Q 032107 112 D 112 (147)
Q Consensus 112 ~ 112 (147)
+
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 4
No 73
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.81 E-value=3e-20 Score=115.69 Aligned_cols=81 Identities=21% Similarity=0.321 Sum_probs=77.3
Q ss_pred CCeEEEcCCCC------CCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCC-eEE
Q 032107 33 QTKLFVGGLSW------GTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNG-RNI 105 (147)
Q Consensus 33 ~~~i~v~nlp~------~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g-~~l 105 (147)
.++|||+|||+ ++++++|+++|.+||.|..+.++.++.+++++|||||+|.+.++|++|++.||+..+.+ +.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 47999999999 99999999999999999999999999999999999999999999999999999999999 999
Q ss_pred EEEeecCC
Q 032107 106 RVSFANDR 113 (147)
Q Consensus 106 ~v~~~~~~ 113 (147)
.|.++.++
T Consensus 86 ~V~~a~~~ 93 (100)
T 3ns6_A 86 FLYTMKDV 93 (100)
T ss_dssp EEEESHHH
T ss_pred EEEECchh
Confidence 99998753
No 74
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.81 E-value=2.5e-19 Score=120.02 Aligned_cols=81 Identities=30% Similarity=0.525 Sum_probs=76.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccC--CeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032107 32 SQTKLFVGGLSWGTDDSSLKEAFSNFG--DITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 32 ~~~~i~v~nlp~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
..++|||+|||+.+++++|+++|.+|| .|..+.++.++.+++++|||||+|.+.++|++||+.|++..|.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ecC
Q 032107 110 AND 112 (147)
Q Consensus 110 ~~~ 112 (147)
+.+
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 864
No 75
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.9e-19 Score=114.08 Aligned_cols=83 Identities=24% Similarity=0.377 Sum_probs=76.2
Q ss_pred CCCeEEEcCCCCCCCHHHHH---HHhhccCCeeEEEEEecCCCC---ccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEE
Q 032107 32 SQTKLFVGGLSWGTDDSSLK---EAFSNFGDITEAKVITERESG---KSRGFGFVTYDSNESASSAQSAMDGQELNGRNI 105 (147)
Q Consensus 32 ~~~~i~v~nlp~~~~~~~l~---~~f~~~g~i~~~~~~~~~~~~---~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l 105 (147)
..++|||.|||+.+++++|+ ++|.+||.|..+.++.+..++ .++|||||+|.+.++|++||+.||+..+.|+.|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 45899999999999999999 999999999999998876643 456999999999999999999999999999999
Q ss_pred EEEeecCCC
Q 032107 106 RVSFANDRP 114 (147)
Q Consensus 106 ~v~~~~~~~ 114 (147)
.|.++.+++
T Consensus 94 ~V~~a~~k~ 102 (111)
T 2cpi_A 94 KASLGTTKY 102 (111)
T ss_dssp EEESCCCCS
T ss_pred EEEeccccc
Confidence 999998765
No 76
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=5.4e-19 Score=107.78 Aligned_cols=79 Identities=25% Similarity=0.544 Sum_probs=72.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032107 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
..+.++|||.|||+++++++|+++|.+||.|..+.++ ++||||+|.+.++|++|+..|++..+.++.|.|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 3456899999999999999999999999999999887 46999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 032107 110 ANDRPPR 116 (147)
Q Consensus 110 ~~~~~~~ 116 (147)
+.++...
T Consensus 77 a~~~~~~ 83 (90)
T 2dnq_A 77 SKNKSKA 83 (90)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 9876543
No 77
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.3e-20 Score=119.81 Aligned_cols=81 Identities=25% Similarity=0.411 Sum_probs=76.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 032107 33 QTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAND 112 (147)
Q Consensus 33 ~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~ 112 (147)
.++|||.|||+.+++++|+++|.+||.|..|.++.++.++.+++||||+|.+.++|++|| .|++..|.|+.|.|.++.+
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 479999999999999999999999999999999999888999999999999999999999 8999999999999999876
Q ss_pred CC
Q 032107 113 RP 114 (147)
Q Consensus 113 ~~ 114 (147)
+.
T Consensus 104 ~~ 105 (114)
T 2cq4_A 104 EK 105 (114)
T ss_dssp HH
T ss_pred Cc
Confidence 43
No 78
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=4.3e-19 Score=110.40 Aligned_cols=82 Identities=30% Similarity=0.534 Sum_probs=73.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032107 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
..+.++|||.|||+.+++++|+++|.+||.| .++.+ .++++++||||+|.+.++|++|+..|++..+.++.|.|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 4456899999999999999999999999876 45555 6788999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 032107 110 ANDRPP 115 (147)
Q Consensus 110 ~~~~~~ 115 (147)
++++..
T Consensus 88 a~~~~~ 93 (101)
T 2fc9_A 88 QGPRGS 93 (101)
T ss_dssp CSSCCC
T ss_pred cCCCCC
Confidence 987643
No 79
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.4e-18 Score=109.59 Aligned_cols=85 Identities=28% Similarity=0.616 Sum_probs=76.4
Q ss_pred hhhCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEE
Q 032107 26 VRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNI 105 (147)
Q Consensus 26 ~~~~~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l 105 (147)
........++|||+|||..+++++|+++|.+||.|..+.++.+ ++||||+|.+.++|++|+..|++..+.|+.|
T Consensus 18 ~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 91 (109)
T 1x4g_A 18 VNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVV 91 (109)
T ss_dssp HHHSCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred ccCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 3345566789999999999999999999999999999988875 5799999999999999999999999999999
Q ss_pred EEEeecCCCCC
Q 032107 106 RVSFANDRPPR 116 (147)
Q Consensus 106 ~v~~~~~~~~~ 116 (147)
.|.++++.+..
T Consensus 92 ~v~~a~~~~~~ 102 (109)
T 1x4g_A 92 KCYWGKESPDM 102 (109)
T ss_dssp EEECCCCCCSS
T ss_pred EEEecCCCCCC
Confidence 99999876543
No 80
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.6e-19 Score=111.91 Aligned_cols=83 Identities=33% Similarity=0.679 Sum_probs=78.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 032107 33 QTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAND 112 (147)
Q Consensus 33 ~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~ 112 (147)
.++|||+|||+.+++++|+++|.+||.|..+.++.++.++.+++||||+|.+.++|++|++.|++..+.|+.|.|.++.+
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 47999999999999999999999999999999999988999999999999999999999999999999999999999987
Q ss_pred CCC
Q 032107 113 RPP 115 (147)
Q Consensus 113 ~~~ 115 (147)
...
T Consensus 88 ~~~ 90 (104)
T 1p1t_A 88 EKN 90 (104)
T ss_dssp TTH
T ss_pred ccc
Confidence 643
No 81
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.80 E-value=7.1e-20 Score=119.25 Aligned_cols=84 Identities=18% Similarity=0.395 Sum_probs=78.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeE--EEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCC----eeCCe
Q 032107 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITE--AKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQ----ELNGR 103 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~--~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~----~~~g~ 103 (147)
....++|||+|||+++++++|+++|.+||.|.. |+++.++.+++++|||||+|.+. +|++|+..|++. .+.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 355689999999999999999999999999966 99999988999999999999999 999999999999 99999
Q ss_pred EEEEEeecCCC
Q 032107 104 NIRVSFANDRP 114 (147)
Q Consensus 104 ~l~v~~~~~~~ 114 (147)
.|.|+++.+..
T Consensus 99 ~l~V~~a~~~~ 109 (131)
T 2m2b_A 99 TINVEFAKGSK 109 (131)
T ss_dssp CCCCEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999998754
No 82
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.80 E-value=3.5e-19 Score=119.20 Aligned_cols=86 Identities=33% Similarity=0.592 Sum_probs=80.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEee
Q 032107 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 110 (147)
Q Consensus 31 ~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 110 (147)
....+|||+|||+.+++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|++|+..|++..+.|+.|.|.++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 44689999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 032107 111 NDRPPR 116 (147)
Q Consensus 111 ~~~~~~ 116 (147)
++..++
T Consensus 148 ~~~~~~ 153 (158)
T 2kn4_A 148 RYGRPP 153 (158)
T ss_dssp CCSSCC
T ss_pred CCCCCC
Confidence 876443
No 83
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.2e-20 Score=112.04 Aligned_cols=81 Identities=27% Similarity=0.505 Sum_probs=74.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEee
Q 032107 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 110 (147)
Q Consensus 31 ~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 110 (147)
.+.++|||+|||+.+++++|+++|.+||.|..+.++.++.++.+++||||+|.+.++|++|++.||+..+.++.|++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 45689999999999999999999999999999999999888999999999999999999999999999999988776654
Q ss_pred c
Q 032107 111 N 111 (147)
Q Consensus 111 ~ 111 (147)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 84
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.9e-19 Score=111.19 Aligned_cols=85 Identities=25% Similarity=0.446 Sum_probs=77.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCC-eeEEEEE-ecCCCCccceEEEEEeCCHHHHHHHHHHhc--CCeeCCeEEE
Q 032107 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGD-ITEAKVI-TERESGKSRGFGFVTYDSNESASSAQSAMD--GQELNGRNIR 106 (147)
Q Consensus 31 ~~~~~i~v~nlp~~~~~~~l~~~f~~~g~-i~~~~~~-~~~~~~~~~g~afv~f~~~~~a~~ai~~l~--~~~~~g~~l~ 106 (147)
.+.++|||+|||+.+++++|+++|.+||. |..+.++ .+..++.+++||||+|.+.++|++|+..|+ +..+.|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 35689999999999999999999999998 9999888 677788999999999999999999999996 5899999999
Q ss_pred EEeecCCCC
Q 032107 107 VSFANDRPP 115 (147)
Q Consensus 107 v~~~~~~~~ 115 (147)
|.+++++..
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999987654
No 85
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.8e-19 Score=111.23 Aligned_cols=82 Identities=15% Similarity=0.281 Sum_probs=73.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcC--CeeCCeEEE
Q 032107 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDG--QELNGRNIR 106 (147)
Q Consensus 29 ~~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~--~~~~g~~l~ 106 (147)
.+.+.++|||+|||+++++++|+++|++||.|..+.++.+ +|||||+|.+.++|++|++.|++ ..+.|++|.
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 4556789999999999999999999999999999998865 58999999999999999998864 789999999
Q ss_pred EEeecCCCCC
Q 032107 107 VSFANDRPPR 116 (147)
Q Consensus 107 v~~~~~~~~~ 116 (147)
|.++++++..
T Consensus 86 V~~A~~~~~~ 95 (105)
T 1sjq_A 86 IQFSNHKELK 95 (105)
T ss_dssp BCCCSSSSCC
T ss_pred EEEcCCCCCC
Confidence 9999876544
No 86
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.80 E-value=4.3e-19 Score=110.41 Aligned_cols=78 Identities=29% Similarity=0.602 Sum_probs=72.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeecCC
Q 032107 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 113 (147)
Q Consensus 34 ~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~~ 113 (147)
++|||+|||+++++++|+++|.+||.|..+.++.+ +++||||+|.+.++|++|++.|++..+.|+.|.|+++++.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999998876 5789999999999999999999999999999999999987
Q ss_pred CCC
Q 032107 114 PPR 116 (147)
Q Consensus 114 ~~~ 116 (147)
+..
T Consensus 76 ~~~ 78 (101)
T 2hvz_A 76 PRR 78 (101)
T ss_dssp CCS
T ss_pred CCc
Confidence 644
No 87
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.80 E-value=9.3e-20 Score=113.41 Aligned_cols=84 Identities=25% Similarity=0.497 Sum_probs=74.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecC-CCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 032107 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITER-ESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRV 107 (147)
Q Consensus 29 ~~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v 107 (147)
.....++|||+|||+++++++|+++|.+|| |..+.++.++ .+++++|||||+|.+.++|++|+ .|++..+.|+.|.|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 445668999999999999999999999999 9999999887 58999999999999999999999 79999999999999
Q ss_pred EeecCCC
Q 032107 108 SFANDRP 114 (147)
Q Consensus 108 ~~~~~~~ 114 (147)
++++++.
T Consensus 93 ~~a~~~~ 99 (100)
T 2j76_E 93 DVADQAQ 99 (100)
T ss_dssp EECCCSC
T ss_pred EeccCCC
Confidence 9988653
No 88
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=7.7e-20 Score=116.33 Aligned_cols=87 Identities=22% Similarity=0.400 Sum_probs=73.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032107 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
..+.++|||+|||+.+++++|+++|.+||.|..+.+..+..++++++||||+|.+.++|++|+..|++..+.++.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34568999999999999999999999999884332222223678899999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 032107 110 ANDRPPR 116 (147)
Q Consensus 110 ~~~~~~~ 116 (147)
+.++..+
T Consensus 102 a~~~~~~ 108 (115)
T 2cpx_A 102 GKNKKQR 108 (115)
T ss_dssp CCCCSCC
T ss_pred ccCCCCC
Confidence 9876554
No 89
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.68 E-value=3.1e-21 Score=123.12 Aligned_cols=86 Identities=34% Similarity=0.512 Sum_probs=79.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeE--------EEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCC
Q 032107 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGDITE--------AKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNG 102 (147)
Q Consensus 31 ~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~--------~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g 102 (147)
.+.++|||+|||+.+++++|+++|.+||.|.. +.++.++.++.+++||||+|.+.++|++|+..|++..+.+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45589999999999999999999999999988 8888888889999999999999999999999999999999
Q ss_pred eEEEEEeecCCCCC
Q 032107 103 RNIRVSFANDRPPR 116 (147)
Q Consensus 103 ~~l~v~~~~~~~~~ 116 (147)
+.|.|+++.+++.+
T Consensus 85 ~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 85 NPIKVSFATRRADF 98 (116)
Confidence 99999999876544
No 90
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.4e-18 Score=106.33 Aligned_cols=78 Identities=26% Similarity=0.539 Sum_probs=71.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032107 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
....++|||+|||+.+++++|+++|.+||.|..+.++++ ||||+|.+.++|++|+..|++..+.++.|.|++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 445689999999999999999999999999999988743 999999999999999999999999999999999
Q ss_pred ecCCCC
Q 032107 110 ANDRPP 115 (147)
Q Consensus 110 ~~~~~~ 115 (147)
++++..
T Consensus 79 a~~~~~ 84 (92)
T 2dgt_A 79 STSRLR 84 (92)
T ss_dssp SSCCCS
T ss_pred ccCCCC
Confidence 987654
No 91
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.4e-19 Score=111.60 Aligned_cols=83 Identities=30% Similarity=0.598 Sum_probs=76.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 032107 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVS 108 (147)
Q Consensus 29 ~~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 108 (147)
.....++|||+|||.++++++|+++|.+||.|..+.++.++ +.+++||||+|.+.++|++|++.|++..+.|+.|.|+
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34566899999999999999999999999999999998874 3488999999999999999999999999999999999
Q ss_pred eecCC
Q 032107 109 FANDR 113 (147)
Q Consensus 109 ~~~~~ 113 (147)
+++++
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 98865
No 92
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.1e-19 Score=111.71 Aligned_cols=79 Identities=20% Similarity=0.323 Sum_probs=74.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeec
Q 032107 32 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAN 111 (147)
Q Consensus 32 ~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 111 (147)
..++|||+|||+++++++|+++|.+||.|..|.++.++. +.++|||||+|.+.++|++|+. +++..+.|+.|.|.++.
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 347999999999999999999999999999999999876 8999999999999999999999 89999999999999865
Q ss_pred C
Q 032107 112 D 112 (147)
Q Consensus 112 ~ 112 (147)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 3
No 93
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.79 E-value=1.4e-19 Score=118.42 Aligned_cols=85 Identities=33% Similarity=0.593 Sum_probs=79.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeec
Q 032107 32 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAN 111 (147)
Q Consensus 32 ~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 111 (147)
+.++|||+|||+.+++++|+++|.+||.|..|.++.++.++++++||||+|.+.++|++|+..|++..+.++.|.|++++
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~ 125 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 125 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 45789999999999999999999999999999999988889999999999999999999999999999999999999998
Q ss_pred CCCCC
Q 032107 112 DRPPR 116 (147)
Q Consensus 112 ~~~~~ 116 (147)
+..+.
T Consensus 126 ~~~~~ 130 (135)
T 2lea_A 126 YGRPP 130 (135)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76543
No 94
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1e-18 Score=107.97 Aligned_cols=80 Identities=33% Similarity=0.593 Sum_probs=72.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeC--CeEEEE
Q 032107 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELN--GRNIRV 107 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~--g~~l~v 107 (147)
..+.++|||.|||+.+++++|+++|.+||.|..+.+..+ ++||||+|.+.++|++|++.||+..+. ++.|.|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 345589999999999999999999999999999988653 579999999999999999999999999 999999
Q ss_pred EeecCCCC
Q 032107 108 SFANDRPP 115 (147)
Q Consensus 108 ~~~~~~~~ 115 (147)
.+++++++
T Consensus 88 ~~a~~~~~ 95 (97)
T 1why_A 88 DFAKSGPS 95 (97)
T ss_dssp EECCCCCC
T ss_pred EECCCCCC
Confidence 99998654
No 95
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.79 E-value=1.9e-19 Score=106.18 Aligned_cols=75 Identities=32% Similarity=0.615 Sum_probs=71.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEee
Q 032107 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 110 (147)
Q Consensus 35 ~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 110 (147)
+|||+|||+++++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|++|++ +++..+.|+.|.|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999988889999999999999999999998 9999999999999875
No 96
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.3e-19 Score=113.46 Aligned_cols=83 Identities=12% Similarity=0.251 Sum_probs=76.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCe-eEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 032107 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDI-TEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVS 108 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 108 (147)
+.+.++|||.|||+++++++|+++|.+||.| ..|.++.++ +++++|||||+|.+.++|++||+. ++..|.++.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 4456899999999999999999999999999 889999987 899999999999999999999996 9999999999999
Q ss_pred eecCCC
Q 032107 109 FANDRP 114 (147)
Q Consensus 109 ~~~~~~ 114 (147)
++...+
T Consensus 90 ~a~~~~ 95 (114)
T 2cpy_A 90 VVTLED 95 (114)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 987543
No 97
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.79 E-value=1.2e-18 Score=112.21 Aligned_cols=85 Identities=28% Similarity=0.499 Sum_probs=78.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 032107 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVS 108 (147)
Q Consensus 29 ~~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 108 (147)
.....++|||+|||+.+++++|+++|.+||.|..+.++.+. ++++++||||+|.+.++|++|+..|++..+.|+.|.|+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34556899999999999999999999999999999999987 88999999999999999999999999999999999999
Q ss_pred eecCCC
Q 032107 109 FANDRP 114 (147)
Q Consensus 109 ~~~~~~ 114 (147)
++....
T Consensus 110 ~a~~~~ 115 (124)
T 2kt5_A 110 LVASQI 115 (124)
T ss_dssp EECCTT
T ss_pred EeCCCC
Confidence 998653
No 98
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.79 E-value=4.9e-19 Score=112.13 Aligned_cols=83 Identities=22% Similarity=0.285 Sum_probs=71.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccC-CeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 032107 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFG-DITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRV 107 (147)
Q Consensus 29 ~~~~~~~i~v~nlp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v 107 (147)
.+...++|||+|||+++++++|+++|.+|| .|..+.+..+ .++|||||+|.+.++|++||+.|++..+.|+.|.|
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V 99 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITV 99 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 445668999999999999999999999999 8998877532 46799999999999999999999999999999999
Q ss_pred EeecCCCC
Q 032107 108 SFANDRPP 115 (147)
Q Consensus 108 ~~~~~~~~ 115 (147)
+++..+++
T Consensus 100 ~~a~~~p~ 107 (111)
T 2jvr_A 100 ERDDNPPP 107 (111)
T ss_dssp EESCC---
T ss_pred EECCCCCC
Confidence 99986544
No 99
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=2.4e-18 Score=104.89 Aligned_cols=78 Identities=26% Similarity=0.513 Sum_probs=71.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032107 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
..+.++|||+|||+.+++++|+++|.+||.|..+.++++ ||||+|.+.++|++|+..|++..+.++.|.|.+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 445689999999999999999999999999999988743 999999999999999999999999999999999
Q ss_pred ecCCCC
Q 032107 110 ANDRPP 115 (147)
Q Consensus 110 ~~~~~~ 115 (147)
+++...
T Consensus 78 a~~~~~ 83 (90)
T 2dnp_A 78 STKGQK 83 (90)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 987644
No 100
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.7e-18 Score=106.95 Aligned_cols=81 Identities=14% Similarity=0.240 Sum_probs=72.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhc--CCeeCCeEEEE
Q 032107 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMD--GQELNGRNIRV 107 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~--~~~~~g~~l~v 107 (147)
..+.++|||+|||+.+++++|+++|.+||.|..+.++.+ ++||||+|.+.++|++|++.|+ +..+.|++|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 345689999999999999999999999999999988764 6799999999999999999774 67899999999
Q ss_pred EeecCCCCC
Q 032107 108 SFANDRPPR 116 (147)
Q Consensus 108 ~~~~~~~~~ 116 (147)
.+++++...
T Consensus 86 ~~a~~~~~~ 94 (101)
T 2cq1_A 86 QYSNHKELK 94 (101)
T ss_dssp EECSCSSCC
T ss_pred EEcCcccCc
Confidence 999876554
No 101
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.79 E-value=1.7e-18 Score=107.35 Aligned_cols=79 Identities=19% Similarity=0.336 Sum_probs=70.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCe--eCCeEEEE
Q 032107 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQE--LNGRNIRV 107 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~--~~g~~l~v 107 (147)
..+.++|||+|||+++++++|+++|.+||.|..+.+++. +++|||+|.+.++|.+|++.|++.. +.|++|.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 345689999999999999999999999999999988753 5799999999999999999999875 78999999
Q ss_pred EeecCCC
Q 032107 108 SFANDRP 114 (147)
Q Consensus 108 ~~~~~~~ 114 (147)
.++++++
T Consensus 92 ~~S~~k~ 98 (100)
T 3r27_A 92 NYSTSQK 98 (100)
T ss_dssp EECSCSC
T ss_pred Eeccccc
Confidence 9998753
No 102
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=2.4e-19 Score=106.12 Aligned_cols=76 Identities=36% Similarity=0.697 Sum_probs=72.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEee
Q 032107 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 110 (147)
Q Consensus 34 ~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 110 (147)
++|||+|||+++++++|+++|++||.|..+.++.++.++.++|+|||+|.+.++|++|++.++ ..+.|+.|.|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999998889999999999999999999999988 9999999999886
No 103
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=114.49 Aligned_cols=82 Identities=41% Similarity=0.673 Sum_probs=76.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 032107 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVS 108 (147)
Q Consensus 29 ~~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 108 (147)
...+.++|||+|||+.+++++|+++|.+||.|..+.++.++.++++++||||+|.+.++|++|++.|++..+.|+.|+|+
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34566899999999999999999999999999999999998889999999999999999999999999999999999998
Q ss_pred ee
Q 032107 109 FA 110 (147)
Q Consensus 109 ~~ 110 (147)
++
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 75
No 104
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.3e-18 Score=108.92 Aligned_cols=83 Identities=19% Similarity=0.305 Sum_probs=75.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeE-EEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 032107 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITE-AKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVS 108 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~-~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 108 (147)
....++|||+|||+.+++++|+++|.+||.|.. +.++.+ .+++++|||||+|.+.++|++||.. ++..+.++.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 345689999999999999999999999999987 778777 7899999999999999999999997 9999999999999
Q ss_pred eecCCC
Q 032107 109 FANDRP 114 (147)
Q Consensus 109 ~~~~~~ 114 (147)
++...+
T Consensus 90 ~~~~~~ 95 (104)
T 1wg5_A 90 KSSRAE 95 (104)
T ss_dssp EECTTT
T ss_pred ECCHHH
Confidence 987654
No 105
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.78 E-value=1.7e-18 Score=109.20 Aligned_cols=80 Identities=29% Similarity=0.518 Sum_probs=72.0
Q ss_pred hCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 032107 28 FMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRV 107 (147)
Q Consensus 28 ~~~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v 107 (147)
......++|||+|||+.+++++|+++|.+||.|..+.++ ++||||+|.+.++|++|+..|++..+.|+.|.|
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 97 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 97 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 345567899999999999999999999999999999887 579999999999999999999999999999999
Q ss_pred EeecCCCC
Q 032107 108 SFANDRPP 115 (147)
Q Consensus 108 ~~~~~~~~ 115 (147)
.++++...
T Consensus 98 ~~a~~~~~ 105 (108)
T 2jvo_A 98 VYSKLPAK 105 (108)
T ss_dssp ESCSCCC-
T ss_pred EEecCCCC
Confidence 99987654
No 106
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.78 E-value=8e-19 Score=111.83 Aligned_cols=76 Identities=26% Similarity=0.410 Sum_probs=66.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeE-----EE
Q 032107 32 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRN-----IR 106 (147)
Q Consensus 32 ~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~-----l~ 106 (147)
..++|||.|||+++++++|+++|.+||.|..+.++.+ +||||+|.+.++|++||+.||+..|.|+. |+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 4589999999999999999999999999999988765 79999999999999999999999999988 67
Q ss_pred EEeecCCC
Q 032107 107 VSFANDRP 114 (147)
Q Consensus 107 v~~~~~~~ 114 (147)
|..+.++.
T Consensus 88 v~~~~~~~ 95 (115)
T 3beg_B 88 VKVDGPRS 95 (115)
T ss_dssp EEECC---
T ss_pred eccCCCCC
Confidence 77666543
No 107
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.6e-18 Score=106.27 Aligned_cols=79 Identities=24% Similarity=0.458 Sum_probs=69.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCC-eeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcC-CeeCCeEEEEE
Q 032107 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGD-ITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDG-QELNGRNIRVS 108 (147)
Q Consensus 31 ~~~~~i~v~nlp~~~~~~~l~~~f~~~g~-i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~-~~~~g~~l~v~ 108 (147)
...++|||+|||+++++++|+++|.+||. |..+.+. .++||||+|.+.++|++|+..||+ ..+.++.|.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 45589999999999999999999999998 6655552 357999999999999999999999 99999999999
Q ss_pred eecCCCCC
Q 032107 109 FANDRPPR 116 (147)
Q Consensus 109 ~~~~~~~~ 116 (147)
++.++..+
T Consensus 79 ~a~~~~~~ 86 (93)
T 2cqh_A 79 YSVSKKLR 86 (93)
T ss_dssp ECCCCCCC
T ss_pred EccCcccc
Confidence 99876543
No 108
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.78 E-value=9.1e-20 Score=119.80 Aligned_cols=83 Identities=17% Similarity=0.274 Sum_probs=73.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 032107 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVS 108 (147)
Q Consensus 29 ~~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 108 (147)
.+...++|||.|||+++++++|+++|.+|| +..|.++.++. ++++|||||+|.+.++|++|| .+++..+.++.|.|.
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~ 118 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELF 118 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEE
Confidence 345568999999999999999999999999 67999988865 899999999999999999999 689999999999999
Q ss_pred eecCCC
Q 032107 109 FANDRP 114 (147)
Q Consensus 109 ~~~~~~ 114 (147)
++...+
T Consensus 119 ~a~~~~ 124 (139)
T 2hgn_A 119 LNSTTG 124 (139)
T ss_dssp ECCCSC
T ss_pred ECCCCC
Confidence 988654
No 109
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.2e-18 Score=109.39 Aligned_cols=82 Identities=23% Similarity=0.517 Sum_probs=76.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCee--------CC
Q 032107 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQEL--------NG 102 (147)
Q Consensus 31 ~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~--------~g 102 (147)
.+.++|||.|||+.+++++|+++|.+||.|..+.++.++ ++.+++||||+|.+.++|++|+..||+..+ .+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 456899999999999999999999999999999999987 899999999999999999999999999999 57
Q ss_pred eEEEEEeecCC
Q 032107 103 RNIRVSFANDR 113 (147)
Q Consensus 103 ~~l~v~~~~~~ 113 (147)
++|.|.++.++
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 88999998843
No 110
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.78 E-value=1.2e-18 Score=111.59 Aligned_cols=82 Identities=21% Similarity=0.315 Sum_probs=75.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCC---eeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 032107 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGD---ITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIR 106 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~---i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~ 106 (147)
....++|||+|||+++++++|+++|..||. |..|.++.++. ++++|||||+|.+.++|++||+ +++..+.++.|.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 345689999999999999999999999998 89999998866 8999999999999999999999 999999999999
Q ss_pred EEeecCC
Q 032107 107 VSFANDR 113 (147)
Q Consensus 107 v~~~~~~ 113 (147)
|.++...
T Consensus 92 V~~a~~~ 98 (118)
T 2db1_A 92 VFKSHRT 98 (118)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9998643
No 111
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.7e-18 Score=109.12 Aligned_cols=82 Identities=15% Similarity=0.278 Sum_probs=73.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhc--CCeeCCeEEE
Q 032107 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMD--GQELNGRNIR 106 (147)
Q Consensus 29 ~~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~--~~~~~g~~l~ 106 (147)
...+.++|||+|||+++++++|+++|++||.|..+.++.+ ++||||+|.+.++|++|++.|+ +..+.|++|.
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 4456689999999999999999999999999999998865 5899999999999999999887 4689999999
Q ss_pred EEeecCCCCC
Q 032107 107 VSFANDRPPR 116 (147)
Q Consensus 107 v~~~~~~~~~ 116 (147)
|.++++++..
T Consensus 101 V~~a~~k~~~ 110 (119)
T 2ad9_A 101 IQFSNHKELK 110 (119)
T ss_dssp EEECSSSSCC
T ss_pred EEEccCCCCC
Confidence 9999876554
No 112
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.78 E-value=3.4e-18 Score=107.97 Aligned_cols=77 Identities=25% Similarity=0.583 Sum_probs=70.2
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032107 31 QSQTKLFVGGLSWG-TDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 31 ~~~~~i~v~nlp~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
...++|||.|||+. +++++|+++|.+||.|..+.+ +++||||+|.+.++|++|+..|++..+.++.|.|++
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34589999999999 999999999999999999988 357999999999999999999999999999999999
Q ss_pred ecCCCC
Q 032107 110 ANDRPP 115 (147)
Q Consensus 110 ~~~~~~ 115 (147)
+..+.+
T Consensus 97 a~~~~~ 102 (110)
T 1wf1_A 97 AGEPKP 102 (110)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 985443
No 113
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.78 E-value=2.2e-18 Score=103.79 Aligned_cols=73 Identities=19% Similarity=0.276 Sum_probs=68.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeec
Q 032107 33 QTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAN 111 (147)
Q Consensus 33 ~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 111 (147)
...|||+||++.+++++|+++|.+||.|..+.+.. ++|||||+|.+.++|++|++.||+..+.++.|+|+.+.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 46899999999999999999999999999998865 47999999999999999999999999999999999884
No 114
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=3.1e-18 Score=106.15 Aligned_cols=80 Identities=26% Similarity=0.555 Sum_probs=73.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032107 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
..+.++|||.|||+.+++++|+++|.+||.|..+.+.++ ++||||+|.+.++|++|++.|++..+.++.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 345689999999999999999999999999999988754 57999999999999999999999999999999999
Q ss_pred ecCCCC
Q 032107 110 ANDRPP 115 (147)
Q Consensus 110 ~~~~~~ 115 (147)
+.++..
T Consensus 86 a~~~~~ 91 (99)
T 2cpj_A 86 ACHSAS 91 (99)
T ss_dssp SSCCSC
T ss_pred cCCCCC
Confidence 987654
No 115
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.5e-18 Score=108.25 Aligned_cols=79 Identities=14% Similarity=0.212 Sum_probs=70.6
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCC--eeCCeEEE
Q 032107 30 SQSQTKLFVGGLSW-GTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQ--ELNGRNIR 106 (147)
Q Consensus 30 ~~~~~~i~v~nlp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~--~~~g~~l~ 106 (147)
..+.++|||+|||+ .+++++|+++|.+||.|..+.++++ ++||||+|.+.++|++|++.|++. .+.|++|.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 34568999999999 9999999999999999999988765 369999999999999999998854 59999999
Q ss_pred EEeecCCC
Q 032107 107 VSFANDRP 114 (147)
Q Consensus 107 v~~~~~~~ 114 (147)
|.+++...
T Consensus 86 V~~a~~~~ 93 (102)
T 1x4d_A 86 VHLSQKYK 93 (102)
T ss_dssp EEEECCCT
T ss_pred EEECCCCC
Confidence 99998654
No 116
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.77 E-value=1.6e-19 Score=110.03 Aligned_cols=80 Identities=36% Similarity=0.674 Sum_probs=73.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeecCC
Q 032107 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 113 (147)
Q Consensus 34 ~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~~ 113 (147)
++|||+|||.++++++|+++|.+||.|..+.++.++.++.+++||||+|.+.+ |++|+..|++..+.|+.|.|+++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 57999999999999999999999999999999999888999999999999999 99999999999999999999998865
Q ss_pred C
Q 032107 114 P 114 (147)
Q Consensus 114 ~ 114 (147)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 117
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4e-19 Score=114.61 Aligned_cols=83 Identities=18% Similarity=0.312 Sum_probs=75.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 032107 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVS 108 (147)
Q Consensus 29 ~~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 108 (147)
.....++|||+|||+.+++++|+++|..||.|..+.++.+..+++++|||||+|.+.++|++||. |++..|.++.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 34556899999999999999999999999999886666666789999999999999999999999 99999999999999
Q ss_pred eecC
Q 032107 109 FAND 112 (147)
Q Consensus 109 ~~~~ 112 (147)
++..
T Consensus 100 ~a~~ 103 (124)
T 1wel_A 100 PITK 103 (124)
T ss_dssp EECH
T ss_pred ECCH
Confidence 9864
No 118
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.77 E-value=1.2e-18 Score=114.12 Aligned_cols=81 Identities=21% Similarity=0.298 Sum_probs=75.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCC---eeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 032107 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGD---ITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIR 106 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~---i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~ 106 (147)
....++|||+|||+++++++|+++|.+||. |..|.++.++. ++++|||||+|.+.++|++||+ +++..+.++.|.
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 345689999999999999999999999998 88999999876 9999999999999999999999 999999999999
Q ss_pred EEeecC
Q 032107 107 VSFAND 112 (147)
Q Consensus 107 v~~~~~ 112 (147)
|.++..
T Consensus 119 V~~a~~ 124 (136)
T 2hgl_A 119 VFKSHR 124 (136)
T ss_dssp EEECCH
T ss_pred EEECCh
Confidence 998764
No 119
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.77 E-value=6.6e-18 Score=104.47 Aligned_cols=78 Identities=22% Similarity=0.428 Sum_probs=70.6
Q ss_pred hCCCCCCeEEEcCCCC-CCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 032107 28 FMSQSQTKLFVGGLSW-GTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIR 106 (147)
Q Consensus 28 ~~~~~~~~i~v~nlp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~ 106 (147)
....+.++|||+|||+ .+++++|+++|.+||.|..+.+. ++||||+|.+.++|++|+..|++..+.|+.|.
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLI 88 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3455678999999998 99999999999999999999883 57999999999999999999999999999999
Q ss_pred EEeecCC
Q 032107 107 VSFANDR 113 (147)
Q Consensus 107 v~~~~~~ 113 (147)
|+++++.
T Consensus 89 V~~a~~~ 95 (97)
T 2xnq_A 89 LEVSSSN 95 (97)
T ss_dssp EEECCCC
T ss_pred EEecCCC
Confidence 9998764
No 120
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.77 E-value=3.4e-18 Score=106.32 Aligned_cols=79 Identities=25% Similarity=0.462 Sum_probs=71.9
Q ss_pred hCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 032107 28 FMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRV 107 (147)
Q Consensus 28 ~~~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v 107 (147)
..+...++|||+|||.++++++|+++|.+||.|..+.+.. .++||||+|.+.++|++|+..|++..+.|+.|+|
T Consensus 22 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 95 (101)
T 2la4_A 22 SAPPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRT 95 (101)
T ss_dssp TSCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCC
T ss_pred cCCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3445568999999999999999999999999999998873 4689999999999999999999999999999999
Q ss_pred EeecC
Q 032107 108 SFAND 112 (147)
Q Consensus 108 ~~~~~ 112 (147)
.++++
T Consensus 96 ~~a~~ 100 (101)
T 2la4_A 96 GWGKE 100 (101)
T ss_dssp CBCCC
T ss_pred EeccC
Confidence 99875
No 121
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.1e-17 Score=103.71 Aligned_cols=78 Identities=29% Similarity=0.512 Sum_probs=70.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcc--CCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 032107 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNF--GDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRV 107 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~--g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v 107 (147)
..+.++|||.|||+.+++++|+++|.+| |.|..+.+. ++||||+|.+.++|++|+..|++..+.++.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 4456899999999999999999999999 889888764 469999999999999999999999999999999
Q ss_pred EeecCCCC
Q 032107 108 SFANDRPP 115 (147)
Q Consensus 108 ~~~~~~~~ 115 (147)
.+++++..
T Consensus 84 ~~a~~~~~ 91 (99)
T 2cpd_A 84 TLAKPVDK 91 (99)
T ss_dssp ECCCCCCC
T ss_pred EECCCCCC
Confidence 99987543
No 122
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=4.3e-18 Score=106.61 Aligned_cols=80 Identities=16% Similarity=0.255 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCC--eeCCeEEEEE
Q 032107 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQ--ELNGRNIRVS 108 (147)
Q Consensus 31 ~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~--~~~g~~l~v~ 108 (147)
.+.++|||+|||+++++++|+++|.+||.|..+.++.+ ++||||+|.+.++|++|++.|++. .+.|++|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 45589999999999999999999999999999988753 579999999999999999988754 5899999999
Q ss_pred eecCCCCC
Q 032107 109 FANDRPPR 116 (147)
Q Consensus 109 ~~~~~~~~ 116 (147)
+++.+...
T Consensus 87 ~a~~~~~~ 94 (104)
T 1wex_A 87 YSTSKRIT 94 (104)
T ss_dssp ECSSSSCC
T ss_pred EccCcccc
Confidence 99876543
No 123
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.77 E-value=1.9e-19 Score=112.03 Aligned_cols=83 Identities=24% Similarity=0.423 Sum_probs=74.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEee
Q 032107 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 110 (147)
Q Consensus 31 ~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 110 (147)
...++|||+|||+.+++++|+++|.+||.|.. .++.+..++.+++||||+|.+.++|++|++ |++..+.++.|.|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 34679999999999999999999999998876 555665678889999999999999999999 9999999999999999
Q ss_pred cCCCC
Q 032107 111 NDRPP 115 (147)
Q Consensus 111 ~~~~~ 115 (147)
.++..
T Consensus 93 ~~~~~ 97 (101)
T 1fj7_A 93 KGRDG 97 (101)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87654
No 124
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.76 E-value=1.7e-18 Score=108.60 Aligned_cols=82 Identities=27% Similarity=0.400 Sum_probs=74.4
Q ss_pred CCCCeEEEcCCCCCC------CHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCe-
Q 032107 31 QSQTKLFVGGLSWGT------DDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGR- 103 (147)
Q Consensus 31 ~~~~~i~v~nlp~~~------~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~- 103 (147)
...++|||+|||+.+ ++++|+++|.+||.|..+.++ ..+++++|||||+|.+.++|++|+..|++..+.|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 345799999999999 779999999999999999887 36789999999999999999999999999999998
Q ss_pred EEEEEeecCCC
Q 032107 104 NIRVSFANDRP 114 (147)
Q Consensus 104 ~l~v~~~~~~~ 114 (147)
.|.|.++....
T Consensus 91 ~l~V~~a~~~~ 101 (105)
T 2nlw_A 91 TFRVNLFTDFD 101 (105)
T ss_dssp EEEEECSCCCC
T ss_pred eEEEEEcchHh
Confidence 99999987643
No 125
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.76 E-value=3.7e-18 Score=105.29 Aligned_cols=77 Identities=21% Similarity=0.457 Sum_probs=70.3
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032107 31 QSQTKLFVGGLSW-GTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 31 ~~~~~i~v~nlp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
.+.++|||+|||+ .+++++|+++|.+||.|..+.+. ++||||+|.+.++|++|+..|++..+.|+.|.|.+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 4568999999998 99999999999999999999884 57999999999999999999999999999999999
Q ss_pred ecCCCC
Q 032107 110 ANDRPP 115 (147)
Q Consensus 110 ~~~~~~ 115 (147)
+.+...
T Consensus 80 a~~~~~ 85 (96)
T 2kvi_A 80 SSSNAR 85 (96)
T ss_dssp EECCCC
T ss_pred cCcCCC
Confidence 987543
No 126
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=4.2e-18 Score=105.25 Aligned_cols=81 Identities=23% Similarity=0.416 Sum_probs=71.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032107 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
....++|||+|||+.+++++|+++|.+||.|. +.++.+ .+++||||+|.+.++|++|+..|++..+.|+.|.|.+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34468999999999999999999999999986 555543 4678999999999999999999999999999999999
Q ss_pred ecCCCC
Q 032107 110 ANDRPP 115 (147)
Q Consensus 110 ~~~~~~ 115 (147)
++++.+
T Consensus 91 a~~~~~ 96 (97)
T 2e5j_A 91 ARQQRD 96 (97)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 987643
No 127
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.76 E-value=6.8e-18 Score=107.29 Aligned_cols=82 Identities=20% Similarity=0.389 Sum_probs=74.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 032107 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVS 108 (147)
Q Consensus 29 ~~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 108 (147)
++...++|||+|||+.+++++|+++|.+||.|..+.++.+ +..++||||+|.+.++|++|+..||+..+.|+.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 80 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVL 80 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 4456689999999999999999999999999999998865 3458999999999999999999999999999999999
Q ss_pred eecCC
Q 032107 109 FANDR 113 (147)
Q Consensus 109 ~~~~~ 113 (147)
++.+.
T Consensus 81 ~a~~~ 85 (115)
T 3lqv_A 81 YYNAN 85 (115)
T ss_dssp ECCHH
T ss_pred EecCC
Confidence 98753
No 128
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.75 E-value=1.4e-17 Score=116.43 Aligned_cols=83 Identities=23% Similarity=0.412 Sum_probs=77.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEee
Q 032107 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 110 (147)
Q Consensus 31 ~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 110 (147)
.+.++|||+|||+++++++|+++|++||.|..|.+++++.+++++|||||+|.+.++|++||..+++..+.++.|.+.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCC
Q 032107 111 NDR 113 (147)
Q Consensus 111 ~~~ 113 (147)
...
T Consensus 93 ~~~ 95 (213)
T 4f02_A 93 QRD 95 (213)
T ss_dssp CCC
T ss_pred ccc
Confidence 654
No 129
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=5.9e-18 Score=109.58 Aligned_cols=81 Identities=19% Similarity=0.322 Sum_probs=72.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 032107 31 QSQTKLFVGGLSWGTDDSSLK----EAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIR 106 (147)
Q Consensus 31 ~~~~~i~v~nlp~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~ 106 (147)
.+.++|||+|||+.+++++|+ ++|++||.|..|.+. .+++++|||||+|.+.++|++|+..||+..+.|++|.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~---~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD---LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC---CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec---cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 456899999999999999876 689999999988764 3577899999999999999999999999999999999
Q ss_pred EEeecCCC
Q 032107 107 VSFANDRP 114 (147)
Q Consensus 107 v~~~~~~~ 114 (147)
|.+++.+.
T Consensus 104 V~~a~~~~ 111 (127)
T 2a3j_A 104 ITFSETPQ 111 (127)
T ss_dssp EEECCCCC
T ss_pred EEEccCcc
Confidence 99998654
No 130
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.75 E-value=1.1e-18 Score=102.79 Aligned_cols=75 Identities=27% Similarity=0.520 Sum_probs=70.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEee
Q 032107 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 110 (147)
Q Consensus 35 ~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 110 (147)
+|||+|||+++++++|+++|.+||.|..+.++.++.++.+++||||+|.+.++|++|++ +++..+.|+.|.|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58999999999999999999999999999999988889999999999999999999999 5889999999998874
No 131
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.75 E-value=4.8e-18 Score=104.80 Aligned_cols=81 Identities=27% Similarity=0.455 Sum_probs=73.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 032107 31 QSQTKLFVGGLSWGTDDSSLK----EAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIR 106 (147)
Q Consensus 31 ~~~~~i~v~nlp~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~ 106 (147)
.+.++|||+|||+.+++++|+ ++|.+||.|..+.++. ++.+++||||+|.+.++|++|+..|++..+.|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 456899999999999999999 9999999999988763 466789999999999999999999999999999999
Q ss_pred EEeecCCC
Q 032107 107 VSFANDRP 114 (147)
Q Consensus 107 v~~~~~~~ 114 (147)
|.++++..
T Consensus 83 v~~a~~~~ 90 (97)
T 1nu4_A 83 IQYAKTDS 90 (97)
T ss_dssp EEECSSCC
T ss_pred EEEccCCC
Confidence 99998754
No 132
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.75 E-value=4.2e-18 Score=104.93 Aligned_cols=80 Identities=23% Similarity=0.497 Sum_probs=71.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEee
Q 032107 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 110 (147)
Q Consensus 31 ~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 110 (147)
.+.++|||+|||+.+++++|+++|.+||.|..+ ..++.++|||||+|.+.++|++|+..|++..+.|+.|.|.++
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 355899999999999999999999999877655 256788999999999999999999999999999999999999
Q ss_pred cCCCC
Q 032107 111 NDRPP 115 (147)
Q Consensus 111 ~~~~~ 115 (147)
.++..
T Consensus 89 ~~~~~ 93 (96)
T 1fjc_A 89 GEKGG 93 (96)
T ss_dssp SSSCC
T ss_pred CCCCC
Confidence 87643
No 133
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=9.4e-18 Score=105.90 Aligned_cols=77 Identities=17% Similarity=0.329 Sum_probs=71.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 032107 33 QTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAND 112 (147)
Q Consensus 33 ~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~ 112 (147)
..+|||+|||+++++++|+++|.+| .|..|.++.++. ++++|||||+|.+.++|++|| .+++..+.++.|.|..+..
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 3689999999999999999999999 899999998865 899999999999999999999 5899999999999988764
No 134
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.75 E-value=2.5e-17 Score=110.15 Aligned_cols=82 Identities=28% Similarity=0.552 Sum_probs=77.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 032107 33 QTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAND 112 (147)
Q Consensus 33 ~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~ 112 (147)
.++|||+|||+++++++|+++|.+||.|..+.++.++.++.++++|||+|.+.++|++|++.|++..+.++.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 47999999999999999999999999999999999988999999999999999999999999999999999999999875
Q ss_pred CC
Q 032107 113 RP 114 (147)
Q Consensus 113 ~~ 114 (147)
..
T Consensus 82 ~~ 83 (167)
T 1fxl_A 82 SS 83 (167)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 135
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.75 E-value=7.4e-18 Score=114.99 Aligned_cols=83 Identities=29% Similarity=0.535 Sum_probs=77.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032107 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
....++|||.|||+.+++++|+++|.+||.|..|.++.+. ++.+++||||+|.+.++|++|++.|++..+.++.|.|++
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456799999999999999999999999999999999887 889999999999999999999999999999999999999
Q ss_pred ecCC
Q 032107 110 ANDR 113 (147)
Q Consensus 110 ~~~~ 113 (147)
+...
T Consensus 164 a~~~ 167 (177)
T 2f3j_A 164 VASQ 167 (177)
T ss_dssp ESSG
T ss_pred ecCC
Confidence 8753
No 136
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.75 E-value=1.6e-17 Score=114.05 Aligned_cols=86 Identities=33% Similarity=0.582 Sum_probs=75.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEee
Q 032107 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 110 (147)
Q Consensus 31 ~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 110 (147)
...++|||.|||+.+++++|+++|.+||.|..+.++.+..++.++|||||+|.+.++|.+|+.. ++..+.|+.|.|.++
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKA 180 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEEC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEec
Confidence 3458999999999999999999999999999999999988899999999999999999999995 789999999999999
Q ss_pred cCCCCCC
Q 032107 111 NDRPPRS 117 (147)
Q Consensus 111 ~~~~~~~ 117 (147)
.++....
T Consensus 181 ~~k~~~~ 187 (196)
T 1l3k_A 181 LSKQEMA 187 (196)
T ss_dssp C------
T ss_pred CChhHhc
Confidence 8876543
No 137
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=5.7e-18 Score=107.14 Aligned_cols=81 Identities=14% Similarity=0.222 Sum_probs=71.1
Q ss_pred CCCCCCeEEEcCCCCC-CCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcC--CeeCCeEE
Q 032107 29 MSQSQTKLFVGGLSWG-TDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDG--QELNGRNI 105 (147)
Q Consensus 29 ~~~~~~~i~v~nlp~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~--~~~~g~~l 105 (147)
...+.++|||+|||++ +++++|+++|.+||.|..+.+++. ++||||+|.+.++|++|++.|++ ..+.|+.|
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 3456789999999998 999999999999999999988643 57999999999999999998864 56899999
Q ss_pred EEEeecCCCC
Q 032107 106 RVSFANDRPP 115 (147)
Q Consensus 106 ~v~~~~~~~~ 115 (147)
.|.+++.+..
T Consensus 95 ~V~~a~~~~~ 104 (112)
T 1x4f_A 95 KVDLSEKYKK 104 (112)
T ss_dssp EEEEECSCSS
T ss_pred EEEECccccc
Confidence 9999986543
No 138
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.7e-17 Score=99.86 Aligned_cols=75 Identities=25% Similarity=0.522 Sum_probs=69.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHh-cCCeeCCeEEEEEe
Q 032107 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAM-DGQELNGRNIRVSF 109 (147)
Q Consensus 31 ~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l-~~~~~~g~~l~v~~ 109 (147)
...++|||+|||+.+++++|+++|.+||.|..+.++.+ ++||||+|.+.++|++|+..| ++..+.|++|.|++
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 44589999999999999999999999999999988864 579999999999999999998 99999999999998
Q ss_pred ec
Q 032107 110 AN 111 (147)
Q Consensus 110 ~~ 111 (147)
++
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 139
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=2.7e-17 Score=101.03 Aligned_cols=78 Identities=23% Similarity=0.447 Sum_probs=68.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeec
Q 032107 32 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAN 111 (147)
Q Consensus 32 ~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 111 (147)
..++|||+|||+.+++++|+++|.+||.|..| +.++.+++ ||||+|.+.++|++|+. |++..+.|+.|.|.++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 34799999999999999999999999999987 55545554 99999999999999999 99999999999999887
Q ss_pred CCCC
Q 032107 112 DRPP 115 (147)
Q Consensus 112 ~~~~ 115 (147)
++..
T Consensus 81 ~~~~ 84 (94)
T 2e5g_A 81 QKEF 84 (94)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 5543
No 140
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.74 E-value=2.2e-18 Score=103.13 Aligned_cols=72 Identities=29% Similarity=0.455 Sum_probs=66.4
Q ss_pred CeEEEcCCCCCC------CHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCe-EEE
Q 032107 34 TKLFVGGLSWGT------DDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGR-NIR 106 (147)
Q Consensus 34 ~~i~v~nlp~~~------~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~-~l~ 106 (147)
++|||+|||+.+ ++++|+++|.+||.|..+.++ +.+++++|||||+|.+.++|++|+..||+..+.|+ +|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 689999999999 679999999999999999877 36788999999999999999999999999999998 876
Q ss_pred E
Q 032107 107 V 107 (147)
Q Consensus 107 v 107 (147)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 5
No 141
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.74 E-value=3.5e-17 Score=109.36 Aligned_cols=82 Identities=39% Similarity=0.741 Sum_probs=77.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032107 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
..+..+|||.|||..+++++|+++|.+||.|..+.++.+..++.++|+|||+|.+.++|.+|+..|++..+.|+.|.|.+
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 163 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 163 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Confidence 34567899999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ec
Q 032107 110 AN 111 (147)
Q Consensus 110 ~~ 111 (147)
++
T Consensus 164 a~ 165 (166)
T 3md3_A 164 AA 165 (166)
T ss_dssp SC
T ss_pred cC
Confidence 86
No 142
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.74 E-value=2.1e-18 Score=108.51 Aligned_cols=81 Identities=19% Similarity=0.265 Sum_probs=74.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCC---eeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 032107 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGD---ITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIR 106 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~---i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~ 106 (147)
....++|||+|||+++++++|+++|..+|. |..|.++.++. ++++|||||+|.+.++|++||. +++..+.++.|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 345689999999999999999999999887 89999998866 9999999999999999999999 999999999999
Q ss_pred EEeecC
Q 032107 107 VSFAND 112 (147)
Q Consensus 107 v~~~~~ 112 (147)
|.++..
T Consensus 86 V~~a~~ 91 (107)
T 2lmi_A 86 VYEINN 91 (107)
T ss_dssp CEECCH
T ss_pred EEECCH
Confidence 998864
No 143
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.74 E-value=2.6e-17 Score=110.42 Aligned_cols=83 Identities=25% Similarity=0.460 Sum_probs=78.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeec
Q 032107 32 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAN 111 (147)
Q Consensus 32 ~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 111 (147)
+.++|||+|||+++++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|++|++.|++..+.++.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 45899999999999999999999999999999999998899999999999999999999999999999999999999987
Q ss_pred CCC
Q 032107 112 DRP 114 (147)
Q Consensus 112 ~~~ 114 (147)
+..
T Consensus 82 ~~~ 84 (168)
T 1b7f_A 82 PGG 84 (168)
T ss_dssp CCS
T ss_pred CCc
Confidence 643
No 144
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.74 E-value=4.3e-17 Score=113.51 Aligned_cols=87 Identities=28% Similarity=0.553 Sum_probs=81.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032107 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
....++|||.|||..+++++|+++|.+||.|..+.++.+..++++++||||+|.+.++|.+|+..||+..|.|+.|.|.+
T Consensus 122 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~ 201 (216)
T 2qfj_A 122 ARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGK 201 (216)
T ss_dssp HTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEE
T ss_pred cCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEE
Confidence 34568999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 032107 110 ANDRPPR 116 (147)
Q Consensus 110 ~~~~~~~ 116 (147)
+.+++..
T Consensus 202 a~~~~~~ 208 (216)
T 2qfj_A 202 AVTPPMP 208 (216)
T ss_dssp CSSCSST
T ss_pred ecCCCCC
Confidence 9876543
No 145
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.1e-17 Score=100.28 Aligned_cols=79 Identities=29% Similarity=0.497 Sum_probs=70.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032107 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
..+.++|||.|+ .+++++|+++|.+||.|..|.+. ..++||||+|.+.++|++|+..|++..+.++.|.|.+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 445689999996 89999999999999999999884 3468999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 032107 110 ANDRPPR 116 (147)
Q Consensus 110 ~~~~~~~ 116 (147)
+.+++..
T Consensus 84 a~~~~~~ 90 (97)
T 1x5p_A 84 ARKQPML 90 (97)
T ss_dssp CSSCCCC
T ss_pred CCCCCCC
Confidence 9876544
No 146
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.73 E-value=4.1e-18 Score=112.32 Aligned_cols=87 Identities=22% Similarity=0.414 Sum_probs=73.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEE-----EEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeE
Q 032107 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAK-----VITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRN 104 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~-----~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~ 104 (147)
..+.++|||+|||+.+++++|+++|.+||.|..+. -+....++.++|||||+|.+.++|.+|+..||+..+.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 34568999999999999999999999999887631 0111246788999999999999999999999999999999
Q ss_pred EEEEeecCCCCC
Q 032107 105 IRVSFANDRPPR 116 (147)
Q Consensus 105 l~v~~~~~~~~~ 116 (147)
|.|.++++..++
T Consensus 122 l~V~~a~~~~~~ 133 (143)
T 3egn_A 122 MVVQFARSARPK 133 (143)
T ss_dssp CEEEECCCSCC-
T ss_pred EEEEECCCCCCc
Confidence 999999876544
No 147
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.73 E-value=1.9e-17 Score=109.98 Aligned_cols=81 Identities=27% Similarity=0.524 Sum_probs=74.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 032107 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVS 108 (147)
Q Consensus 29 ~~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 108 (147)
.....++|||+|||+.+++++|+++|.+||.|..+.++.+ ++|||||+|.+.++|++|+..|++..+.|++|.|+
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 143 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVE 143 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3445689999999999999999999999999999998876 46899999999999999999999999999999999
Q ss_pred eecCCC
Q 032107 109 FANDRP 114 (147)
Q Consensus 109 ~~~~~~ 114 (147)
++.++.
T Consensus 144 ~a~~~~ 149 (150)
T 2i2y_A 144 LSNGEK 149 (150)
T ss_dssp ECCCCC
T ss_pred EcCCCC
Confidence 998753
No 148
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.73 E-value=5.5e-17 Score=111.55 Aligned_cols=85 Identities=26% Similarity=0.495 Sum_probs=80.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEee
Q 032107 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 110 (147)
Q Consensus 31 ~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 110 (147)
...++|||.|||+.+++++|+++|.+||.|..+.++.++.++.+++||||+|.+.++|++|+..|++..+.|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 55689999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 032107 111 NDRPP 115 (147)
Q Consensus 111 ~~~~~ 115 (147)
.++..
T Consensus 192 ~~~~~ 196 (198)
T 2yh0_A 192 SVGAK 196 (198)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87654
No 149
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.73 E-value=3.2e-17 Score=99.48 Aligned_cols=75 Identities=16% Similarity=0.297 Sum_probs=69.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeec
Q 032107 32 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAN 111 (147)
Q Consensus 32 ~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 111 (147)
..++|||+|||+.+++++|+++|.+| .|..+.+. ++++||||+|.+.++|++|++.|++..+.|++|+|+++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 45899999999999999999999999 99998874 567899999999999999999999999999999999986
Q ss_pred CC
Q 032107 112 DR 113 (147)
Q Consensus 112 ~~ 113 (147)
..
T Consensus 77 ~~ 78 (88)
T 1wg1_A 77 TD 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 150
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1e-17 Score=107.85 Aligned_cols=81 Identities=20% Similarity=0.252 Sum_probs=73.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCe----eEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEE
Q 032107 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDI----TEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNI 105 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i----~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l 105 (147)
..+..+|||+|||+++++++|+++|.+||.| ..|.++.+ .+++++|||||+|.+.++|++||.. ++..+.++.|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i 97 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYI 97 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Confidence 4556899999999999999999999999875 68888888 5899999999999999999999995 9999999999
Q ss_pred EEEeecC
Q 032107 106 RVSFAND 112 (147)
Q Consensus 106 ~v~~~~~ 112 (147)
.|..+..
T Consensus 98 ~V~~a~~ 104 (123)
T 2dha_A 98 ELFRSTA 104 (123)
T ss_dssp CCEEECH
T ss_pred EEEECCH
Confidence 9988753
No 151
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.72 E-value=2e-17 Score=103.01 Aligned_cols=80 Identities=25% Similarity=0.605 Sum_probs=74.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeec
Q 032107 32 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAN 111 (147)
Q Consensus 32 ~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 111 (147)
..++|||+|||+.+++++|+++|.+||.|..+.++.++ +++++|||||+|.+.++|++|+. ++..+.|+.|.|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 34799999999999999999999999999999999997 89999999999999999999999 8999999999999987
Q ss_pred CCC
Q 032107 112 DRP 114 (147)
Q Consensus 112 ~~~ 114 (147)
++.
T Consensus 85 ~~~ 87 (102)
T 2xs2_A 85 RKQ 87 (102)
T ss_dssp ECC
T ss_pred cCc
Confidence 654
No 152
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.4e-17 Score=104.30 Aligned_cols=76 Identities=18% Similarity=0.201 Sum_probs=69.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeec
Q 032107 32 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAN 111 (147)
Q Consensus 32 ~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 111 (147)
..++|||+|||+.+++++|+++|.+||.|..|.++. .++||||+|.+.++|++|+..||+..+.++.|.|.|+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 357999999999999999999999999999988764 45799999999999999999999999999999999987
Q ss_pred CC
Q 032107 112 DR 113 (147)
Q Consensus 112 ~~ 113 (147)
..
T Consensus 83 ~~ 84 (111)
T 1whx_A 83 IG 84 (111)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 153
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.72 E-value=7.1e-17 Score=108.72 Aligned_cols=80 Identities=26% Similarity=0.532 Sum_probs=76.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeec
Q 032107 32 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAN 111 (147)
Q Consensus 32 ~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 111 (147)
...+|||.|||+.+++++|+++|.+||.|..+.++.++.++.++|+|||+|.+.++|++|+..|++..+.|+.|.|+++.
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 45899999999999999999999999999999999998889999999999999999999999999999999999999873
No 154
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.72 E-value=1.4e-17 Score=107.60 Aligned_cols=80 Identities=25% Similarity=0.362 Sum_probs=71.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCee--EEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 032107 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDIT--EAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRV 107 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~--~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v 107 (147)
.....+|||+|||+++++++|+++|.+| .|. .|.++.++. ++++|||||+|.+.++|++||+ +++..|.++.|.|
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V 115 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEV 115 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEE
Confidence 3456899999999999999999999999 676 888888866 9999999999999999999999 4779999999999
Q ss_pred EeecC
Q 032107 108 SFAND 112 (147)
Q Consensus 108 ~~~~~ 112 (147)
..+..
T Consensus 116 ~~a~~ 120 (126)
T 2hgm_A 116 FKSSQ 120 (126)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88764
No 155
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=4.3e-17 Score=100.32 Aligned_cols=79 Identities=22% Similarity=0.306 Sum_probs=71.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEE-EEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEee
Q 032107 32 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEA-KVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 110 (147)
Q Consensus 32 ~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 110 (147)
..++|||+|||+.+++++|+++|.+||.|..+ .++.++.++ .|||+|.+.++|++|+..|++..+.|+.|.|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45799999999999999999999999999999 477765443 3999999999999999999999999999999999
Q ss_pred cCCC
Q 032107 111 NDRP 114 (147)
Q Consensus 111 ~~~~ 114 (147)
.++.
T Consensus 90 ~~~~ 93 (96)
T 2e44_A 90 PDEM 93 (96)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 8763
No 156
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.71 E-value=1.1e-16 Score=109.81 Aligned_cols=84 Identities=37% Similarity=0.660 Sum_probs=76.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032107 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
+.+.++|||+|||+++++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|++||.. ++..+.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 34558999999999999999999999999999999999988999999999999999999999985 88999999999999
Q ss_pred ecCCC
Q 032107 110 ANDRP 114 (147)
Q Consensus 110 ~~~~~ 114 (147)
+....
T Consensus 89 ~~~~~ 93 (196)
T 1l3k_A 89 AVSRE 93 (196)
T ss_dssp CCC--
T ss_pred ccCcc
Confidence 87653
No 157
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.70 E-value=2.5e-16 Score=101.91 Aligned_cols=79 Identities=23% Similarity=0.414 Sum_probs=70.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceE-EEEEeCCHHHHHHHHHHhcCCeeCC--eEEE
Q 032107 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGF-GFVTYDSNESASSAQSAMDGQELNG--RNIR 106 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~-afv~f~~~~~a~~ai~~l~~~~~~g--~~l~ 106 (147)
+...-.|||+||++.+++++|+++|.+||.|.+|.+..+. +++ |||+|.+.++|++|++.|++..|.+ ..|+
T Consensus 25 ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~Lr 99 (130)
T 3zzy_A 25 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 99 (130)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEE
T ss_pred CCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEE
Confidence 3444578899999999999999999999999999887642 467 9999999999999999999999988 8899
Q ss_pred EEeecCC
Q 032107 107 VSFANDR 113 (147)
Q Consensus 107 v~~~~~~ 113 (147)
|++++..
T Consensus 100 I~~ak~~ 106 (130)
T 3zzy_A 100 IDFSKLT 106 (130)
T ss_dssp EEECSCS
T ss_pred EEecCCC
Confidence 9999865
No 158
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.70 E-value=3.6e-17 Score=109.67 Aligned_cols=80 Identities=34% Similarity=0.633 Sum_probs=76.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 032107 33 QTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAND 112 (147)
Q Consensus 33 ~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~ 112 (147)
..+|||.|||+.+++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|++|++ +++..+.|++|.|.++.+
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCC
Confidence 4689999999999999999999999999999999988889999999999999999999998 899999999999999987
Q ss_pred C
Q 032107 113 R 113 (147)
Q Consensus 113 ~ 113 (147)
+
T Consensus 166 k 166 (167)
T 2cjk_A 166 R 166 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 159
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.70 E-value=1.4e-16 Score=106.78 Aligned_cols=78 Identities=22% Similarity=0.368 Sum_probs=69.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCC--eEEEEEee
Q 032107 33 QTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNG--RNIRVSFA 110 (147)
Q Consensus 33 ~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g--~~l~v~~~ 110 (147)
..+|||+||++.+++++|+++|++||.|.+|.+..+. .++||||+|.+.++|++|++.|++..|.+ +.|+|+++
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 4578999999999999999999999999999886432 46899999999999999999999999966 99999999
Q ss_pred cCCC
Q 032107 111 NDRP 114 (147)
Q Consensus 111 ~~~~ 114 (147)
+++.
T Consensus 122 k~~~ 125 (164)
T 1sjr_A 122 KLTS 125 (164)
T ss_dssp SSSS
T ss_pred cCCc
Confidence 8753
No 160
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.69 E-value=2e-16 Score=110.62 Aligned_cols=80 Identities=33% Similarity=0.589 Sum_probs=74.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 032107 33 QTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAND 112 (147)
Q Consensus 33 ~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~ 112 (147)
..+|||.|||+.+++++|+++|.+||.|..+.++.+. +.++|||||+|.+.++|++||+.||+..|.|++|.|.++.+
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 4689999999999999999999999999999999874 44789999999999999999999999999999999999876
Q ss_pred CC
Q 032107 113 RP 114 (147)
Q Consensus 113 ~~ 114 (147)
+.
T Consensus 181 ~~ 182 (213)
T 4f02_A 181 RK 182 (213)
T ss_dssp HH
T ss_pred Cc
Confidence 43
No 161
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.1e-16 Score=102.56 Aligned_cols=78 Identities=21% Similarity=0.255 Sum_probs=71.1
Q ss_pred CeEEEcCC----CCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCC----HHH----HHHHHH--HhcCCe
Q 032107 34 TKLFVGGL----SWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDS----NES----ASSAQS--AMDGQE 99 (147)
Q Consensus 34 ~~i~v~nl----p~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~----~~~----a~~ai~--~l~~~~ 99 (147)
..|||+|| |+.+++.+|+++|.+||.|.++.++.|+.|+.++||+||+|.+ .++ |.+|+. .+++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999995 322 788888 789999
Q ss_pred eCCeEEEEEeec
Q 032107 100 LNGRNIRVSFAN 111 (147)
Q Consensus 100 ~~g~~l~v~~~~ 111 (147)
|.|+.|+|.+..
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999865
No 162
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.5e-16 Score=100.82 Aligned_cols=80 Identities=20% Similarity=0.389 Sum_probs=69.9
Q ss_pred CCCCCCeEEE--cCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCee-----C
Q 032107 29 MSQSQTKLFV--GGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQEL-----N 101 (147)
Q Consensus 29 ~~~~~~~i~v--~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~-----~ 101 (147)
...+..+||| +||++.+++++|+++|++||.|..+.++.+ ++||||+|.+.++|++|++.||+..+ .
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~ 94 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 94 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCC
Confidence 3445678999 679999999999999999999999877532 68999999999999999999999998 6
Q ss_pred CeEEEEEeecCCC
Q 032107 102 GRNIRVSFANDRP 114 (147)
Q Consensus 102 g~~l~v~~~~~~~ 114 (147)
+++|.|.++...+
T Consensus 95 g~~l~v~~a~~~p 107 (114)
T 2cq2_A 95 KITLYLNFVEKVQ 107 (114)
T ss_dssp EEECEEEEESCCC
T ss_pred CcEEEEEecccCc
Confidence 8899999987543
No 163
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.69 E-value=3.2e-16 Score=105.03 Aligned_cols=80 Identities=29% Similarity=0.549 Sum_probs=75.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCC--eEEEEE
Q 032107 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNG--RNIRVS 108 (147)
Q Consensus 31 ~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g--~~l~v~ 108 (147)
...++|||.|||..+++++|+++|++||.|..+.++.++.++.++++|||+|.+.++|.+|+..|++..+.| ++|.|+
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 356899999999999999999999999999999999998889999999999999999999999999999977 999998
Q ss_pred ee
Q 032107 109 FA 110 (147)
Q Consensus 109 ~~ 110 (147)
++
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 164
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=6.4e-17 Score=98.09 Aligned_cols=77 Identities=25% Similarity=0.432 Sum_probs=65.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeec
Q 032107 32 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAN 111 (147)
Q Consensus 32 ~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 111 (147)
..++|||+|||+++++++|+++|.+||.|..+.++.+ +++||||+|.+.++|++++.. ...+.++.|.|.++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecC
Confidence 4589999999999999999999999999999988754 578999999999999865331 345589999999988
Q ss_pred CCCC
Q 032107 112 DRPP 115 (147)
Q Consensus 112 ~~~~ 115 (147)
++..
T Consensus 77 ~~~~ 80 (88)
T 1wf0_A 77 PKHN 80 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 165
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.69 E-value=3e-16 Score=104.78 Aligned_cols=80 Identities=23% Similarity=0.473 Sum_probs=73.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeecCC
Q 032107 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 113 (147)
Q Consensus 34 ~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~~ 113 (147)
++|||+|||+++++++|+++|.+||.|..+.++.++ ++++++||||+|.+.++|++|+..|++..+.++.|.|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 479999999999999999999999999999998885 4778999999999999999999999999999999999998765
Q ss_pred C
Q 032107 114 P 114 (147)
Q Consensus 114 ~ 114 (147)
.
T Consensus 80 ~ 80 (166)
T 3md3_A 80 Q 80 (166)
T ss_dssp C
T ss_pred C
Confidence 4
No 166
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.68 E-value=1.8e-16 Score=110.33 Aligned_cols=82 Identities=28% Similarity=0.533 Sum_probs=74.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeec
Q 032107 32 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAN 111 (147)
Q Consensus 32 ~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 111 (147)
+.++|||+|||.++++++|+++|.+||.|..+.++.++.++++++||||+|.+.++|++|++.|++..+.++.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 34799999999999999999999999999999999988889999999999999999999999999999999999998876
Q ss_pred CC
Q 032107 112 DR 113 (147)
Q Consensus 112 ~~ 113 (147)
..
T Consensus 107 ~~ 108 (216)
T 2qfj_A 107 NI 108 (216)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 167
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.68 E-value=1.9e-16 Score=95.58 Aligned_cols=71 Identities=21% Similarity=0.556 Sum_probs=65.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcc----C-------CeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCee
Q 032107 32 SQTKLFVGGLSWGTDDSSLKEAFSNF----G-------DITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQEL 100 (147)
Q Consensus 32 ~~~~i~v~nlp~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~ 100 (147)
+.++|||+|||+.+++++|+++|.+| | .|..+.+..+ ++||||+|.+.++|++|+ .|++..+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 45899999999999999999999999 8 8888887654 589999999999999999 8999999
Q ss_pred CCeEEEEEe
Q 032107 101 NGRNIRVSF 109 (147)
Q Consensus 101 ~g~~l~v~~ 109 (147)
.|+.|+|+.
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999874
No 168
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.67 E-value=4e-16 Score=108.68 Aligned_cols=77 Identities=16% Similarity=0.298 Sum_probs=71.1
Q ss_pred CCCeEEEcCCC-CCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEee
Q 032107 32 SQTKLFVGGLS-WGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 110 (147)
Q Consensus 32 ~~~~i~v~nlp-~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 110 (147)
+.++|||+||| +.+++++|+++|.+||.|..|+++.++ +|||||+|.+.++|++||+.||+..+.|+.|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 45899999999 899999999999999999999987652 689999999999999999999999999999999998
Q ss_pred cCC
Q 032107 111 NDR 113 (147)
Q Consensus 111 ~~~ 113 (147)
+..
T Consensus 78 ~~~ 80 (205)
T 3tyt_A 78 KQP 80 (205)
T ss_dssp SCS
T ss_pred cCC
Confidence 754
No 169
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1.5e-16 Score=101.09 Aligned_cols=77 Identities=23% Similarity=0.395 Sum_probs=65.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCC---CccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 032107 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERES---GKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRV 107 (147)
Q Consensus 31 ~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v 107 (147)
...++|||+|||+++++++|+++|.+||.|. +.++.+..+ ++++|||||+|.+.++|++||+.|+ .++|+.+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 3458999999999999999999999999999 777777666 6899999999999999999999884 366666655
Q ss_pred Eee
Q 032107 108 SFA 110 (147)
Q Consensus 108 ~~~ 110 (147)
..+
T Consensus 83 ~~~ 85 (114)
T 2dnl_A 83 VSS 85 (114)
T ss_dssp ECC
T ss_pred ccC
Confidence 543
No 170
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.67 E-value=3.8e-16 Score=95.03 Aligned_cols=78 Identities=23% Similarity=0.471 Sum_probs=62.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCe--eCCeEEE
Q 032107 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQE--LNGRNIR 106 (147)
Q Consensus 29 ~~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~--~~g~~l~ 106 (147)
...+..+|||+|||+++++++|+++|++||.|..+.++.+ ++|||||+|.+.++|++ +++.. +.++.|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 3456689999999999999999999999999999988764 67999999999999884 45554 4599999
Q ss_pred EEeecCCCC
Q 032107 107 VSFANDRPP 115 (147)
Q Consensus 107 v~~~~~~~~ 115 (147)
|.++.++..
T Consensus 78 v~~a~~k~~ 86 (89)
T 3d2w_A 78 ISNAEPKHN 86 (89)
T ss_dssp EEECC----
T ss_pred EEEcCCCCc
Confidence 999886543
No 171
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.67 E-value=7.3e-16 Score=103.00 Aligned_cols=79 Identities=32% Similarity=0.632 Sum_probs=73.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeE--EEEEe
Q 032107 32 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRN--IRVSF 109 (147)
Q Consensus 32 ~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~--l~v~~ 109 (147)
...+|||.|||..+++++|+++|.+||.|..+.++.++.++.++++|||+|.+.++|.+|+..||+..+.|+. |.|.+
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 4578999999999999999999999999999999998888999999999999999999999999999999965 77776
Q ss_pred e
Q 032107 110 A 110 (147)
Q Consensus 110 ~ 110 (147)
+
T Consensus 167 A 167 (167)
T 1fxl_A 167 A 167 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 172
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.67 E-value=6.9e-16 Score=103.94 Aligned_cols=82 Identities=27% Similarity=0.477 Sum_probs=73.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCC--ccceEEEEEeCCHHHHHHHHHHhcCCeeC---CeEEE
Q 032107 32 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESG--KSRGFGFVTYDSNESASSAQSAMDGQELN---GRNIR 106 (147)
Q Consensus 32 ~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~--~~~g~afv~f~~~~~a~~ai~~l~~~~~~---g~~l~ 106 (147)
+.++|||+|||+.+++++|+++|.+||.|..+.++.++.++ ++++||||+|.+.++|++|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 45799999999999999999999999999999999987776 89999999999999999999999998775 57777
Q ss_pred EEeecCC
Q 032107 107 VSFANDR 113 (147)
Q Consensus 107 v~~~~~~ 113 (147)
+.++...
T Consensus 82 ~~~~~~~ 88 (175)
T 3nmr_A 82 MKPADSE 88 (175)
T ss_dssp EEECGGG
T ss_pred Ecccccc
Confidence 8777654
No 173
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.67 E-value=8.8e-16 Score=98.78 Aligned_cols=75 Identities=15% Similarity=0.294 Sum_probs=66.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceE-EEEEeCCHHHHHHHHHHhcCCeeCC--eEEEEEee
Q 032107 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGF-GFVTYDSNESASSAQSAMDGQELNG--RNIRVSFA 110 (147)
Q Consensus 34 ~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~-afv~f~~~~~a~~ai~~l~~~~~~g--~~l~v~~~ 110 (147)
..|||.||++.+++++|+++|++||.|..|.+... .|| |||+|.+.++|++|++.||+..|.+ +.|+|.++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 45789999999999999999999999999988642 276 9999999999999999999999987 68999999
Q ss_pred cCCC
Q 032107 111 NDRP 114 (147)
Q Consensus 111 ~~~~ 114 (147)
+++.
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 8653
No 174
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.66 E-value=7e-16 Score=103.91 Aligned_cols=81 Identities=31% Similarity=0.525 Sum_probs=73.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeC---CeEEE
Q 032107 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELN---GRNIR 106 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~---g~~l~ 106 (147)
.....+|||.|||+.+++++|+++|.+||.|..+.++.++ ++.++|||||+|.+.++|.+|+..||+..+. +++|.
T Consensus 92 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 170 (175)
T 3nmr_A 92 AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMV 170 (175)
T ss_dssp CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCE
T ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeE
Confidence 3356799999999999999999999999999999998884 5889999999999999999999999998776 48999
Q ss_pred EEeec
Q 032107 107 VSFAN 111 (147)
Q Consensus 107 v~~~~ 111 (147)
|.++.
T Consensus 171 V~~ad 175 (175)
T 3nmr_A 171 VKFAD 175 (175)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99874
No 175
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.66 E-value=2.1e-15 Score=94.44 Aligned_cols=83 Identities=16% Similarity=0.238 Sum_probs=71.9
Q ss_pred CCCCCeEEEcCCCC-----CCCHHHHHHHhhccCCeeEEEEEecCCC-CccceEEEEEeCCHHHHHHHHHHhcCCeeCCe
Q 032107 30 SQSQTKLFVGGLSW-----GTDDSSLKEAFSNFGDITEAKVITERES-GKSRGFGFVTYDSNESASSAQSAMDGQELNGR 103 (147)
Q Consensus 30 ~~~~~~i~v~nlp~-----~~~~~~l~~~f~~~g~i~~~~~~~~~~~-~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~ 103 (147)
..+.++|+|.||.. +.++++|++.|++||.|..+.++.++.+ +.++|++||+|.+.++|.+|+..||+..+.|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 34568999999863 2367899999999999999999987543 57899999999999999999999999999999
Q ss_pred EEEEEeecC
Q 032107 104 NIRVSFAND 112 (147)
Q Consensus 104 ~l~v~~~~~ 112 (147)
.|.|.++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999863
No 176
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.66 E-value=8.9e-16 Score=98.54 Aligned_cols=80 Identities=29% Similarity=0.488 Sum_probs=70.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 032107 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVS 108 (147)
Q Consensus 29 ~~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 108 (147)
.+.+.++|||+|+ ++++++|+++|.+||.|..|.+. .+++||||+|.+.++|++|+..|++..+.|+.|.|.
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456789999995 69999999999999999999885 356899999999999999999999999999999999
Q ss_pred eecCCCCC
Q 032107 109 FANDRPPR 116 (147)
Q Consensus 109 ~~~~~~~~ 116 (147)
++.++...
T Consensus 107 ~a~~~~~~ 114 (121)
T 2bz2_A 107 IARKQPML 114 (121)
T ss_dssp ECCSSCC-
T ss_pred EeCCCCCC
Confidence 99876543
No 177
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=7e-16 Score=93.75 Aligned_cols=71 Identities=28% Similarity=0.402 Sum_probs=63.4
Q ss_pred CeEEEcCCCCCCCHHH----HHHHhhccC-CeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 032107 34 TKLFVGGLSWGTDDSS----LKEAFSNFG-DITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVS 108 (147)
Q Consensus 34 ~~i~v~nlp~~~~~~~----l~~~f~~~g-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 108 (147)
+.|||.|||+.+++++ |+++|.+|| .|..| ++ |+|||+|.+.++|++|++.|++..+.|++|+|.
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~ 79 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVS 79 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEE
Confidence 3499999999999987 558999994 99887 22 899999999999999999999999999999999
Q ss_pred eecCCC
Q 032107 109 FANDRP 114 (147)
Q Consensus 109 ~~~~~~ 114 (147)
+++...
T Consensus 80 ~A~~~s 85 (96)
T 2diu_A 80 FTPKNR 85 (96)
T ss_dssp SSCCSC
T ss_pred ecCCCc
Confidence 998654
No 178
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.64 E-value=8.6e-16 Score=103.78 Aligned_cols=78 Identities=23% Similarity=0.510 Sum_probs=71.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeec
Q 032107 32 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAN 111 (147)
Q Consensus 32 ~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 111 (147)
..++|||.|||+.+++++|+++|.+||.|..+ ..++.+++||||+|.+.++|.+|+..|++..+.|+.|.|.++.
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 45799999999999999999999999977655 4678889999999999999999999999999999999999998
Q ss_pred CCC
Q 032107 112 DRP 114 (147)
Q Consensus 112 ~~~ 114 (147)
+++
T Consensus 173 ~k~ 175 (175)
T 1fje_B 173 EKG 175 (175)
T ss_dssp SCC
T ss_pred CCC
Confidence 753
No 179
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.64 E-value=2.2e-15 Score=103.98 Aligned_cols=79 Identities=20% Similarity=0.311 Sum_probs=72.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 032107 33 QTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAND 112 (147)
Q Consensus 33 ~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~ 112 (147)
.++|||+|||+++++++|+++|.+||.|..|.++++. ++.++|||||+|.+.++|++|+..+ +..+.|+.|.|.+...
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 3789999999999999999999999999999999875 4889999999999999999999865 4699999999998775
Q ss_pred C
Q 032107 113 R 113 (147)
Q Consensus 113 ~ 113 (147)
.
T Consensus 187 y 187 (193)
T 2voo_A 187 Y 187 (193)
T ss_dssp C
T ss_pred H
Confidence 4
No 180
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.63 E-value=1.3e-15 Score=110.89 Aligned_cols=84 Identities=25% Similarity=0.465 Sum_probs=76.1
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhhccCCeeEEEEEecCC-CCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 032107 30 SQSQTKLFVGGLSWG-TDDSSLKEAFSNFGDITEAKVITERE-SGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRV 107 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~-~~~~~l~~~f~~~g~i~~~~~~~~~~-~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v 107 (147)
....++|||.|||+. +++++|+++|.+||.|..+.++.+.. ++.+++||||+|.+.++|.+|+ .||+..+.|+.|.|
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V 285 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISV 285 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEE
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEE
Confidence 445689999999999 99999999999999999999988765 5889999999999999999999 99999999999999
Q ss_pred EeecCCC
Q 032107 108 SFANDRP 114 (147)
Q Consensus 108 ~~~~~~~ 114 (147)
.++.+++
T Consensus 286 ~~a~~k~ 292 (292)
T 2ghp_A 286 SLADKKP 292 (292)
T ss_dssp EECCCCC
T ss_pred EEecCCC
Confidence 9998763
No 181
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.63 E-value=1e-15 Score=102.52 Aligned_cols=79 Identities=32% Similarity=0.705 Sum_probs=72.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeec
Q 032107 32 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAN 111 (147)
Q Consensus 32 ~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 111 (147)
+.++|||+|||+++++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|++|+.. ...+.|+.|.+.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 357999999999999999999999999999999999988999999999999999999999994 568899998888765
Q ss_pred C
Q 032107 112 D 112 (147)
Q Consensus 112 ~ 112 (147)
+
T Consensus 80 ~ 80 (167)
T 2cjk_A 80 P 80 (167)
T ss_dssp C
T ss_pred c
Confidence 3
No 182
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.63 E-value=3.3e-15 Score=108.16 Aligned_cols=81 Identities=27% Similarity=0.457 Sum_probs=73.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 032107 31 QSQTKLFVGGLSWGTDDSSLK----EAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIR 106 (147)
Q Consensus 31 ~~~~~i~v~nlp~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~ 106 (147)
.+.++|||+|||+++++++|+ ++|.+||.|..|.+++ +++++|||||+|.+.++|++|++.|++..+.|+.|.
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 446899999999999999976 8999999999998775 577899999999999999999999999999999999
Q ss_pred EEeecCCC
Q 032107 107 VSFANDRP 114 (147)
Q Consensus 107 v~~~~~~~ 114 (147)
|.+++...
T Consensus 84 v~~a~~~~ 91 (282)
T 3pgw_A 84 IQYAKTDS 91 (282)
T ss_pred EEEeccCc
Confidence 99987543
No 183
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.62 E-value=6.7e-15 Score=106.64 Aligned_cols=85 Identities=24% Similarity=0.449 Sum_probs=79.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032107 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
.....+|||+|||+.+++++|+++|.+||.|..+.++.+..++.++|||||+|.+.++|.+|+..|++..+.|+.|.|.+
T Consensus 92 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 171 (284)
T 3smz_A 92 QPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHW 171 (284)
T ss_dssp CCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34567999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 032107 110 ANDRP 114 (147)
Q Consensus 110 ~~~~~ 114 (147)
+.+..
T Consensus 172 a~~~~ 176 (284)
T 3smz_A 172 TDAGQ 176 (284)
T ss_dssp CCGGG
T ss_pred CCCCC
Confidence 87643
No 184
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.62 E-value=4.2e-15 Score=107.70 Aligned_cols=84 Identities=32% Similarity=0.463 Sum_probs=77.6
Q ss_pred CCCCeEEEcCCCCCC-CHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032107 31 QSQTKLFVGGLSWGT-DDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 31 ~~~~~i~v~nlp~~~-~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
....+|||.|||+.+ ++++|+++|..||.|..+.++.+. ++.++++|||+|.+.++|.+|+..|++..+.|+.|.|.+
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 260 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSF 260 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEE
Confidence 456899999999995 999999999999999999998875 788999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 032107 110 ANDRPP 115 (147)
Q Consensus 110 ~~~~~~ 115 (147)
+.+...
T Consensus 261 a~~~~~ 266 (284)
T 3smz_A 261 CAPGPP 266 (284)
T ss_dssp CCSSSC
T ss_pred ecCCCc
Confidence 987654
No 185
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.61 E-value=3.4e-15 Score=105.40 Aligned_cols=80 Identities=23% Similarity=0.417 Sum_probs=73.4
Q ss_pred CCCCCCeEEEcCCCC-CCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 032107 29 MSQSQTKLFVGGLSW-GTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRV 107 (147)
Q Consensus 29 ~~~~~~~i~v~nlp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v 107 (147)
...+.++|||+|||+ .+++++|+++|.+||.|..|.++.++ ++||||+|.+.++|++|++.|++..+.|+.|.|
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 345668999999999 99999999999999999999998764 679999999999999999999999999999999
Q ss_pred EeecCC
Q 032107 108 SFANDR 113 (147)
Q Consensus 108 ~~~~~~ 113 (147)
.++...
T Consensus 105 ~~a~~~ 110 (229)
T 2adc_A 105 TLSKHQ 110 (229)
T ss_dssp ECCSCC
T ss_pred EEecCc
Confidence 998754
No 186
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.5e-14 Score=91.42 Aligned_cols=83 Identities=19% Similarity=0.321 Sum_probs=69.6
Q ss_pred CCCCCCeEEEcCCCCCCC-----------HHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcC
Q 032107 29 MSQSQTKLFVGGLSWGTD-----------DSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDG 97 (147)
Q Consensus 29 ~~~~~~~i~v~nlp~~~~-----------~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~ 97 (147)
.+.+.++|+|.||..... +++|+++|.+||.|..+.+ .++ .++|||||+|.+.++|++|+..||+
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 344568999999944332 5799999999999999955 443 2689999999999999999999999
Q ss_pred CeeCCeEEEEEeecCCCC
Q 032107 98 QELNGRNIRVSFANDRPP 115 (147)
Q Consensus 98 ~~~~g~~l~v~~~~~~~~ 115 (147)
..+.+++|.|.++.++..
T Consensus 87 ~~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTTD 104 (112)
T ss_dssp CEETTEECEEEECCSCCC
T ss_pred CEECCcEEEEEEeCCCCC
Confidence 999999999999987543
No 187
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.59 E-value=4.4e-15 Score=105.37 Aligned_cols=79 Identities=30% Similarity=0.569 Sum_probs=70.2
Q ss_pred CCCCCeEEEcCCCCCC---------CHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCee
Q 032107 30 SQSQTKLFVGGLSWGT---------DDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQEL 100 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~---------~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~ 100 (147)
....++|||+||+..+ ++++|+++|.+||.|..|.++.. ++||||+|.+.++|+.|++.|++..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4456899999999998 79999999999999999998853 68999999999999999999999999
Q ss_pred ------------CCeEEEEEeecCCC
Q 032107 101 ------------NGRNIRVSFANDRP 114 (147)
Q Consensus 101 ------------~g~~l~v~~~~~~~ 114 (147)
.|+.|.|.|++..+
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC---
T ss_pred eccccccccccCCCCEEEEEEccCCC
Confidence 89999999998654
No 188
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.59 E-value=1.2e-14 Score=105.16 Aligned_cols=76 Identities=25% Similarity=0.490 Sum_probs=70.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeC-CeEEEEEe
Q 032107 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELN-GRNIRVSF 109 (147)
Q Consensus 31 ~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~-g~~l~v~~ 109 (147)
...++|||.|||..+++++|+++|.+||.|..+.++.++ ++||||+|.+.++|++|+..||+..+. |+.|+|.|
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 279 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISF 279 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEE
Confidence 356789999999999999999999999999999988653 479999999999999999999999999 99999999
Q ss_pred ec
Q 032107 110 AN 111 (147)
Q Consensus 110 ~~ 111 (147)
++
T Consensus 280 ak 281 (282)
T 3pgw_A 280 AK 281 (282)
T ss_pred ec
Confidence 86
No 189
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.57 E-value=4.8e-15 Score=102.09 Aligned_cols=76 Identities=24% Similarity=0.440 Sum_probs=70.8
Q ss_pred CCeEEEcCCCC-CCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeec
Q 032107 33 QTKLFVGGLSW-GTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAN 111 (147)
Q Consensus 33 ~~~i~v~nlp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 111 (147)
.++|||+|||+ .+++++|+++|.+||.|..+.++.++ ++||||+|.+.++|++|+..|++..+.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 47999999999 99999999999999999999888764 5799999999999999999999999999999999987
Q ss_pred CC
Q 032107 112 DR 113 (147)
Q Consensus 112 ~~ 113 (147)
..
T Consensus 78 ~~ 79 (198)
T 1qm9_A 78 HQ 79 (198)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 190
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.57 E-value=1.4e-15 Score=102.70 Aligned_cols=83 Identities=25% Similarity=0.442 Sum_probs=70.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032107 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
+.+.++|||+|||+.+++++|+++|.++|.+..+ ++.+..++.++|||||+|.+.++|++|++ |++..+.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~-~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDL-AVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 87 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC-CCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceE-EEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEec
Confidence 4456899999999999999999999999866542 23333567788999999999999999995 999999999999999
Q ss_pred ecCCC
Q 032107 110 ANDRP 114 (147)
Q Consensus 110 ~~~~~ 114 (147)
+.+..
T Consensus 88 ~~~~~ 92 (175)
T 1fje_B 88 PKGRD 92 (175)
T ss_dssp CCCSS
T ss_pred CCCcc
Confidence 87654
No 191
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.56 E-value=1.2e-14 Score=101.28 Aligned_cols=78 Identities=13% Similarity=0.213 Sum_probs=67.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCe--eEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCe----E
Q 032107 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGDI--TEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGR----N 104 (147)
Q Consensus 31 ~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i--~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~----~ 104 (147)
.+..+|||.|||+.+++++|+++|++||.| ..++++.+. +..+++|||+|.+.++|.+||..||+..+.+. +
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 456789999999999999999999999998 888887764 45569999999999999999999999999775 5
Q ss_pred EEEEee
Q 032107 105 IRVSFA 110 (147)
Q Consensus 105 l~v~~~ 110 (147)
+.|+++
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 666554
No 192
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.55 E-value=1.7e-14 Score=99.26 Aligned_cols=78 Identities=22% Similarity=0.349 Sum_probs=71.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccC-CeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeC-CeEEEEE
Q 032107 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFG-DITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELN-GRNIRVS 108 (147)
Q Consensus 31 ~~~~~i~v~nlp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~-g~~l~v~ 108 (147)
.+.++|||.|||..+++++|+++|.+|| .|..+.+..+. +++|||+|.+.++|.+|+..|++..+. ++.|.|.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 4468999999999999999999999999 99999886542 579999999999999999999999999 9999999
Q ss_pred eecCC
Q 032107 109 FANDR 113 (147)
Q Consensus 109 ~~~~~ 113 (147)
+++++
T Consensus 193 ~a~~~ 197 (198)
T 1qm9_A 193 FSKST 197 (198)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 98764
No 193
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.55 E-value=5.1e-14 Score=99.31 Aligned_cols=79 Identities=22% Similarity=0.336 Sum_probs=71.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccC-CeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeC-CeEEEE
Q 032107 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFG-DITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELN-GRNIRV 107 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~-g~~l~v 107 (147)
..+.++|||.|||+.+++++|+++|.+|| .|..+.++.+ .+++|||+|.+.++|.+|+..|++..+. ++.|.|
T Consensus 148 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v 222 (229)
T 2adc_A 148 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRV 222 (229)
T ss_dssp CCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEE
Confidence 34568999999999999999999999999 9999988653 2579999999999999999999999999 999999
Q ss_pred EeecCC
Q 032107 108 SFANDR 113 (147)
Q Consensus 108 ~~~~~~ 113 (147)
.+++++
T Consensus 223 ~~a~~~ 228 (229)
T 2adc_A 223 SFSKST 228 (229)
T ss_dssp EECSSC
T ss_pred EEecCC
Confidence 998864
No 194
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.55 E-value=2.2e-14 Score=103.08 Aligned_cols=77 Identities=31% Similarity=0.608 Sum_probs=70.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032107 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 30 ~~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
....++|||+|||+++++++|+++|..||.|..|.+.++ +|||||+|.+.++|.+|+..|++..+.++.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 345579999999999999999999999999999988643 57999999999999999999999999999999998
Q ss_pred ecC
Q 032107 110 AND 112 (147)
Q Consensus 110 ~~~ 112 (147)
+.+
T Consensus 93 a~~ 95 (261)
T 3sde_A 93 ATH 95 (261)
T ss_dssp CCC
T ss_pred ccc
Confidence 864
No 195
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.55 E-value=3.4e-14 Score=102.11 Aligned_cols=82 Identities=27% Similarity=0.353 Sum_probs=73.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCC-eeC---CeEEE
Q 032107 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQ-ELN---GRNIR 106 (147)
Q Consensus 31 ~~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~-~~~---g~~l~ 106 (147)
.+..+|||.|||+.+++++|+++|..||.|..+.++.+ .+++++|||||+|.+.++|.+|+..|++. .+. +++|.
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~ 172 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVI 172 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCE
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEE
Confidence 45679999999999999999999999999999999998 68999999999999999999999999554 443 89999
Q ss_pred EEeecCC
Q 032107 107 VSFANDR 113 (147)
Q Consensus 107 v~~~~~~ 113 (147)
|.++.+.
T Consensus 173 v~~~~~~ 179 (261)
T 3sde_A 173 VEPMEQF 179 (261)
T ss_dssp EEECCCE
T ss_pred Eeecccc
Confidence 9998754
No 196
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.54 E-value=3.4e-14 Score=103.27 Aligned_cols=83 Identities=13% Similarity=0.266 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccC-CeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 032107 31 QSQTKLFVGGLSWGTDDSSLKEAFSNFG-DITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSF 109 (147)
Q Consensus 31 ~~~~~i~v~nlp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 109 (147)
...++|||+|||+.+++++|+++|.+|| .|..+.++.+.. +.+++||||+|.+.++|.+|+..|++..+.|+.|.|.+
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 193 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKV 193 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3568999999999999999999999999 999999988754 77899999999999999999999999999999999999
Q ss_pred ecCCC
Q 032107 110 ANDRP 114 (147)
Q Consensus 110 ~~~~~ 114 (147)
+.+..
T Consensus 194 a~~~~ 198 (292)
T 2ghp_A 194 SNPLE 198 (292)
T ss_dssp CCCC-
T ss_pred CCCCc
Confidence 87654
No 197
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.53 E-value=6.1e-14 Score=87.76 Aligned_cols=80 Identities=13% Similarity=0.196 Sum_probs=67.9
Q ss_pred CCCeEEEcCC--CCCCC--------HHHHHHHhhccCCeeEEEEEecCCC--CccceEEEEEeCCHHHHHHHHHHhcCCe
Q 032107 32 SQTKLFVGGL--SWGTD--------DSSLKEAFSNFGDITEAKVITERES--GKSRGFGFVTYDSNESASSAQSAMDGQE 99 (147)
Q Consensus 32 ~~~~i~v~nl--p~~~~--------~~~l~~~f~~~g~i~~~~~~~~~~~--~~~~g~afv~f~~~~~a~~ai~~l~~~~ 99 (147)
+.+.|.|.|+ |.+.. .++|++.|++||.|.++.++++..+ ..++|++||+|.+.++|.+|+..||+..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4577888887 33333 3689999999999999999887544 3578999999999999999999999999
Q ss_pred eCCeEEEEEeec
Q 032107 100 LNGRNIRVSFAN 111 (147)
Q Consensus 100 ~~g~~l~v~~~~ 111 (147)
+.|+.|.|.+..
T Consensus 84 f~GR~i~v~~~~ 95 (105)
T 3v4m_A 84 FANRVVVTKYCD 95 (105)
T ss_dssp ETTEECEEEEEC
T ss_pred eCCCEEEEEEeC
Confidence 999999999875
No 198
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.52 E-value=8.2e-14 Score=93.57 Aligned_cols=76 Identities=21% Similarity=0.528 Sum_probs=66.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcc----C-------CeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCee
Q 032107 32 SQTKLFVGGLSWGTDDSSLKEAFSNF----G-------DITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQEL 100 (147)
Q Consensus 32 ~~~~i~v~nlp~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~ 100 (147)
+.++|||+|||+++++++|+++|.+| | .|..+.+.. .++||||+|.+.++|++|+ .|++..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 35799999999999999999999999 6 566665543 3689999999999999999 7999999
Q ss_pred CCeEEEEEeecCCC
Q 032107 101 NGRNIRVSFANDRP 114 (147)
Q Consensus 101 ~g~~l~v~~~~~~~ 114 (147)
.|+.|.|.++....
T Consensus 76 ~g~~i~v~~~~~~~ 89 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQ 89 (172)
T ss_dssp TTEECEEECCSSCC
T ss_pred cCceeeecCCcccC
Confidence 99999999877543
No 199
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.50 E-value=2e-13 Score=87.13 Aligned_cols=80 Identities=15% Similarity=0.263 Sum_probs=69.0
Q ss_pred CCCeEEEcCCC--CCC---CHHHHHHHhhccCCeeEEEEEecCC----CCccceEEEEEeCCHHHHHHHHHHhcCCeeCC
Q 032107 32 SQTKLFVGGLS--WGT---DDSSLKEAFSNFGDITEAKVITERE----SGKSRGFGFVTYDSNESASSAQSAMDGQELNG 102 (147)
Q Consensus 32 ~~~~i~v~nlp--~~~---~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g 102 (147)
+.++|+|.|+- .++ .+++|++.|.+||.|..|.++.+.. ++..+|++||+|.+.++|.+|+..||+..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 45889999983 222 3579999999999999999988754 35678999999999999999999999999999
Q ss_pred eEEEEEeec
Q 032107 103 RNIRVSFAN 111 (147)
Q Consensus 103 ~~l~v~~~~ 111 (147)
+.|.|.+..
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999875
No 200
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.50 E-value=1.2e-13 Score=94.74 Aligned_cols=76 Identities=20% Similarity=0.519 Sum_probs=65.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcc----C-------CeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCee
Q 032107 32 SQTKLFVGGLSWGTDDSSLKEAFSNF----G-------DITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQEL 100 (147)
Q Consensus 32 ~~~~i~v~nlp~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~ 100 (147)
..++|||+|||+++++++|+++|.+| + .|..+.+. ..++||||+|.+.++|++|+ .|++..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~------~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE------TTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec------CCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 45899999999999999999999999 4 45555443 34689999999999999999 7999999
Q ss_pred CCeEEEEEeecCCC
Q 032107 101 NGRNIRVSFANDRP 114 (147)
Q Consensus 101 ~g~~l~v~~~~~~~ 114 (147)
.|+.|.|.++....
T Consensus 76 ~g~~i~v~~~~~~~ 89 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQ 89 (198)
T ss_dssp TTEEEEEECCCCCC
T ss_pred cCceEEEeCCCCCC
Confidence 99999999987653
No 201
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.49 E-value=1.7e-14 Score=90.13 Aligned_cols=72 Identities=21% Similarity=0.409 Sum_probs=60.4
Q ss_pred EcCCCCCCCHHHHHHHh------------hccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEE
Q 032107 38 VGGLSWGTDDSSLKEAF------------SNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNI 105 (147)
Q Consensus 38 v~nlp~~~~~~~l~~~f------------~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l 105 (147)
+.+||+.+++++|++.| ++||.|..+.++.+. +++++|||||+|.+.++|++|+..||+..+.|++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 34555556666665555 999999999998874 47889999999999999999999999999999999
Q ss_pred EEEee
Q 032107 106 RVSFA 110 (147)
Q Consensus 106 ~v~~~ 110 (147)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99875
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=9.5e-13 Score=81.55 Aligned_cols=66 Identities=17% Similarity=0.289 Sum_probs=57.3
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeecCCCC
Q 032107 43 WGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRPP 115 (147)
Q Consensus 43 ~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~~~~ 115 (147)
..+++++|+++|.+||.|..|.++ ++++|||||+|.+.++|++|+..++ .+.+++|.|.|++.++.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV--GLVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeEEEEEccCCCC
Confidence 468999999999999999999887 3568999999999999999999744 46789999999887654
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.41 E-value=7.9e-13 Score=98.31 Aligned_cols=77 Identities=19% Similarity=0.383 Sum_probs=64.5
Q ss_pred hCCCCCCeEEEcC--CCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeC---C
Q 032107 28 FMSQSQTKLFVGG--LSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELN---G 102 (147)
Q Consensus 28 ~~~~~~~~i~v~n--lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~---g 102 (147)
..+.+..+|||+| |++.+++++|+++|++||.|..|.+.. .++||||+|.+.++|++||+.||+..+. |
T Consensus 13 ~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g 86 (345)
T 3tht_A 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 86 (345)
T ss_dssp CCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred ecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccC
Confidence 3456678999999 578999999999999999999886643 3689999999999999999999999883 3
Q ss_pred e--EEEEEee
Q 032107 103 R--NIRVSFA 110 (147)
Q Consensus 103 ~--~l~v~~~ 110 (147)
+ .|.+.+.
T Consensus 87 ~~~~ly~~~~ 96 (345)
T 3tht_A 87 QKITLYLNFV 96 (345)
T ss_dssp CEEECEEEEC
T ss_pred CceEEEEEEe
Confidence 4 5666655
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.36 E-value=9.6e-12 Score=78.77 Aligned_cols=77 Identities=16% Similarity=0.193 Sum_probs=63.3
Q ss_pred CCCCeEEEcCCCCCC----------CHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCee
Q 032107 31 QSQTKLFVGGLSWGT----------DDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQEL 100 (147)
Q Consensus 31 ~~~~~i~v~nlp~~~----------~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~ 100 (147)
.+.+.|.|.|+=... .+++|++.|++||.|..+.+.++. .+|++||+|.+.++|++|+..||+..+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 345678888863211 124789999999999999886553 479999999999999999999999999
Q ss_pred CCeEEEEEeec
Q 032107 101 NGRNIRVSFAN 111 (147)
Q Consensus 101 ~g~~l~v~~~~ 111 (147)
.|+.|.|.++.
T Consensus 81 ~GR~i~v~~~~ 91 (114)
T 3s6e_A 81 AGKMITAAYVP 91 (114)
T ss_dssp TTEECEEEEEC
T ss_pred CCEEEEEEEEc
Confidence 99999999874
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=5.6e-11 Score=75.68 Aligned_cols=77 Identities=16% Similarity=0.170 Sum_probs=67.5
Q ss_pred CCCCCCeEEEcCCCCC-CCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCC-HHHHHHHHHHhc--CCeeCCeE
Q 032107 29 MSQSQTKLFVGGLSWG-TDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDS-NESASSAQSAMD--GQELNGRN 104 (147)
Q Consensus 29 ~~~~~~~i~v~nlp~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~-~~~a~~ai~~l~--~~~~~g~~ 104 (147)
....+..|+|.||++. ++.++|+++|.+||.|..|.+..+.. .|||.|.+ ..+|.+|+..|+ +.+|.+..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 4567889999999999 99999999999999999999988754 59999999 899999999995 66888888
Q ss_pred EEEEeec
Q 032107 105 IRVSFAN 111 (147)
Q Consensus 105 l~v~~~~ 111 (147)
+.++...
T Consensus 88 ~~~evL~ 94 (121)
T 1owx_A 88 VTWEVLE 94 (121)
T ss_dssp EEEEECC
T ss_pred EEEEECC
Confidence 8887643
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=1e-10 Score=70.43 Aligned_cols=76 Identities=25% Similarity=0.391 Sum_probs=63.1
Q ss_pred CCCCeEEEcCCC----CCCCH----HHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCC
Q 032107 31 QSQTKLFVGGLS----WGTDD----SSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNG 102 (147)
Q Consensus 31 ~~~~~i~v~nlp----~~~~~----~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g 102 (147)
++..+|+|.-++ .++.. .+|.+.|.+||.|..+++..+. +||+|.+.++|.+||+ |++..+.|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 345678787655 23333 5789999999999999998863 8999999999999999 99999999
Q ss_pred eEEEEEeecCCCC
Q 032107 103 RNIRVSFANDRPP 115 (147)
Q Consensus 103 ~~l~v~~~~~~~~ 115 (147)
+.|+|+++++...
T Consensus 76 r~LkV~lkt~dW~ 88 (91)
T 2dnr_A 76 RTITIALKSPSGP 88 (91)
T ss_dssp EEEEEEECCCSSC
T ss_pred eEEEEEeCCCCcc
Confidence 9999999987654
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.03 E-value=5.9e-10 Score=67.42 Aligned_cols=74 Identities=20% Similarity=0.291 Sum_probs=61.7
Q ss_pred CCCCCCeEEEcCCCCC-----CCH----HHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCe
Q 032107 29 MSQSQTKLFVGGLSWG-----TDD----SSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQE 99 (147)
Q Consensus 29 ~~~~~~~i~v~nlp~~-----~~~----~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~ 99 (147)
.-++..+|+|.-++.. +.. .+|.+.|.+||.|..+++..++ +||+|.+.++|.+||+ |++..
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~ 81 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMK 81 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCee
Confidence 4456678989877632 222 4688999999999999998873 9999999999999999 99999
Q ss_pred eCCeEEEEEeec
Q 032107 100 LNGRNIRVSFAN 111 (147)
Q Consensus 100 ~~g~~l~v~~~~ 111 (147)
+.|+.|+|++..
T Consensus 82 v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 82 VKGRAVKISGPS 93 (95)
T ss_dssp ETTEEEEEECCC
T ss_pred eCCeEEEEeccC
Confidence 999999998754
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.93 E-value=4e-09 Score=73.77 Aligned_cols=67 Identities=16% Similarity=0.299 Sum_probs=59.3
Q ss_pred CCHHHHHHHhhccCCeeEEEEEecCC----CCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeec
Q 032107 45 TDDSSLKEAFSNFGDITEAKVITERE----SGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAN 111 (147)
Q Consensus 45 ~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 111 (147)
-.+++|.+.|.+||.|..+.++.+.. ++..+|++||+|.+.++|.+|+..|++..+.|+.|.+.+..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 34578999999999999999886543 34789999999999999999999999999999999999875
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.83 E-value=5e-08 Score=60.30 Aligned_cols=72 Identities=15% Similarity=0.183 Sum_probs=65.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcc-----CCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 032107 32 SQTKLFVGGLSWGTDDSSLKEAFSNF-----GDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIR 106 (147)
Q Consensus 32 ~~~~i~v~nlp~~~~~~~l~~~f~~~-----g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~ 106 (147)
..++|-|.|||..++...|+.+++++ +.+..+.+..+. +-|+|+|.+...|-+|.-.|++.+|.+++|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 45889999999999999999999999 999999887764 4899999999999999988999999999999
Q ss_pred EEe
Q 032107 107 VSF 109 (147)
Q Consensus 107 v~~ 109 (147)
|.-
T Consensus 94 ~gT 96 (117)
T 2l9w_A 94 SGT 96 (117)
T ss_dssp EEC
T ss_pred ecC
Confidence 863
No 210
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.20 E-value=3.8e-05 Score=46.94 Aligned_cols=76 Identities=22% Similarity=0.269 Sum_probs=60.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcc-----CCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEE
Q 032107 31 QSQTKLFVGGLSWGTDDSSLKEAFSNF-----GDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNI 105 (147)
Q Consensus 31 ~~~~~i~v~nlp~~~~~~~l~~~f~~~-----g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l 105 (147)
....+|.|.|||+.+.++.|.-+|+.- |.|..+.... .-|+|+|.+.+.++++++. ....|++..|
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~L 76 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQL 76 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEE
Confidence 456799999999999999999999872 4677776643 2699999999999999983 3678888888
Q ss_pred EEEeecCCCC
Q 032107 106 RVSFANDRPP 115 (147)
Q Consensus 106 ~v~~~~~~~~ 115 (147)
.|.-.-++.+
T Consensus 77 sV~P~~~~~~ 86 (104)
T 2dhx_A 77 SLRPAPPRAP 86 (104)
T ss_dssp EEEECCCCCC
T ss_pred EEEcCCCCCc
Confidence 8876555443
No 211
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.93 E-value=9.2e-05 Score=45.38 Aligned_cols=77 Identities=13% Similarity=0.152 Sum_probs=61.9
Q ss_pred CCCeEEEcCCCCCCCH-----HHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 032107 32 SQTKLFVGGLSWGTDD-----SSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIR 106 (147)
Q Consensus 32 ~~~~i~v~nlp~~~~~-----~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~ 106 (147)
-.++++|.||+.++-. +.++++|..|+.+....+.+.-. =..|.|.+.++|.+|-..||+..+.|+.|+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR------Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK------RVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT------EEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce------EEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 3478999999876522 46788999999887766654321 368999999999999999999999999999
Q ss_pred EEeecCCC
Q 032107 107 VSFANDRP 114 (147)
Q Consensus 107 v~~~~~~~ 114 (147)
|-.+.+.+
T Consensus 78 ~YFgq~~~ 85 (104)
T 1wey_A 78 LYFAQTLH 85 (104)
T ss_dssp EECCCCSS
T ss_pred EEecCCCC
Confidence 99987543
No 212
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.83 E-value=9.4e-05 Score=44.73 Aligned_cols=56 Identities=20% Similarity=0.251 Sum_probs=46.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhc
Q 032107 33 QTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMD 96 (147)
Q Consensus 33 ~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~ 96 (147)
+..||.-..|.++...||.++|+.||. ..|+++.|. .|||.|.+.+.|..|+..+.
T Consensus 15 r~HVf~l~FP~ewKt~DI~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHVTFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEEECCTTCCHHHHHHHHTTTCS-CCCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEEeCChhhhhHHHHHHhhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 344444499999999999999999984 467787763 79999999999999999663
No 213
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.73 E-value=0.00038 Score=41.78 Aligned_cols=69 Identities=12% Similarity=0.138 Sum_probs=55.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCc--cceEEEEEeCCHHHHHHHHHHhcCCeeCC
Q 032107 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGK--SRGFGFVTYDSNESASSAQSAMDGQELNG 102 (147)
Q Consensus 34 ~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~--~~g~afv~f~~~~~a~~ai~~l~~~~~~g 102 (147)
+.|-|++||+.++++++.+.+.....+....+...+.+.+ ...-|+|.|.+.+++....+.+++..+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 4678999999999999999999887666666655443332 23579999999999999999999998843
No 214
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.53 E-value=0.00017 Score=43.74 Aligned_cols=55 Identities=20% Similarity=0.216 Sum_probs=46.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhc
Q 032107 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMD 96 (147)
Q Consensus 34 ~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~ 96 (147)
..||.-+.|.++...||.++|+.|| -..|.++.|. .|||.|.+.+.|..|+..+.
T Consensus 6 ~HV~~l~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHVTFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEEECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEEeCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 3455559999999999999999998 4567788763 79999999999999999764
No 215
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.29 E-value=0.0022 Score=40.29 Aligned_cols=72 Identities=22% Similarity=0.239 Sum_probs=56.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCC-eEEEEEee
Q 032107 32 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNG-RNIRVSFA 110 (147)
Q Consensus 32 ~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g-~~l~v~~~ 110 (147)
..+-|.|-+.|+.. ...+...|.++|.|.+...... ..+-.|.|.+..+|++||. .|+..+.+ ..|-|...
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~------~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT------GNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS------SSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC------CCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 34678888998875 5678889999999988765221 2389999999999999999 69999974 66777774
Q ss_pred c
Q 032107 111 N 111 (147)
Q Consensus 111 ~ 111 (147)
.
T Consensus 95 ~ 95 (119)
T 1wwh_A 95 I 95 (119)
T ss_dssp C
T ss_pred C
Confidence 3
No 216
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.70 E-value=0.0022 Score=38.81 Aligned_cols=68 Identities=10% Similarity=0.085 Sum_probs=48.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCc--cceEEEEEeCCHHHHHHHHHHhcCCeeC
Q 032107 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGK--SRGFGFVTYDSNESASSAQSAMDGQELN 101 (147)
Q Consensus 34 ~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~--~~g~afv~f~~~~~a~~ai~~l~~~~~~ 101 (147)
-.|.|+.||+.+|++++.+.+...-.+....+...+.+.+ .-.-|||.|.+.++.....+.+++..+-
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 4688999999999999888777653332222222222211 1246899999999999999999998874
No 217
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.53 E-value=0.0016 Score=50.20 Aligned_cols=55 Identities=18% Similarity=0.221 Sum_probs=41.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHH
Q 032107 33 QTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQS 93 (147)
Q Consensus 33 ~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~ 93 (147)
.++|+|. .|..+++.+|.++|.+||.|..+.+..++. .|++|+|.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g-----~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG-----LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS-----EEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC-----eEEEEEeCCHHHHHHHHh
Confidence 3789997 799999999999999999999987765432 699999999999887755
No 218
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.93 E-value=0.012 Score=37.54 Aligned_cols=76 Identities=24% Similarity=0.253 Sum_probs=53.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeE-EEEEe------------cCCCC-ccceEEEEEeCCHHHHHHHHHHhcCCe
Q 032107 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITE-AKVIT------------ERESG-KSRGFGFVTYDSNESASSAQSAMDGQE 99 (147)
Q Consensus 34 ~~i~v~nlp~~~~~~~l~~~f~~~g~i~~-~~~~~------------~~~~~-~~~g~afv~f~~~~~a~~ai~~l~~~~ 99 (147)
..|.|-+.|+... ..+.+.|+++|.|.. ..... .+... .......|.|.+..+|++||. .|+..
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 4677778876554 567788999998755 21111 00000 123577999999999999999 69999
Q ss_pred eCCeEEEEEeec
Q 032107 100 LNGRNIRVSFAN 111 (147)
Q Consensus 100 ~~g~~l~v~~~~ 111 (147)
+.|..|-|....
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 999988887764
No 219
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.69 E-value=0.016 Score=37.69 Aligned_cols=33 Identities=12% Similarity=0.035 Sum_probs=26.8
Q ss_pred EEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcC
Q 032107 63 AKVITERESGKSRGFGFVTYDSNESASSAQSAMDG 97 (147)
Q Consensus 63 ~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~ 97 (147)
+.++++.. +++||+||+|.+.++|++|+..+++
T Consensus 3 ~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~ 35 (158)
T 2kn4_A 3 YKLILNGK--TLKGETTTEAVDAATAEKVFKQYAN 35 (158)
T ss_dssp EEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHH
T ss_pred EEEEecCc--cccchhHHHHHHHHhHHHHHHhhcc
Confidence 45555533 5889999999999999999988774
No 220
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.20 E-value=0.0079 Score=38.89 Aligned_cols=41 Identities=10% Similarity=0.050 Sum_probs=36.3
Q ss_pred CCccceEEEEEeCCHHHHHHHHHHh-cCCeeCCeEEEEEeecC
Q 032107 71 SGKSRGFGFVTYDSNESASSAQSAM-DGQELNGRNIRVSFAND 112 (147)
Q Consensus 71 ~~~~~g~afv~f~~~~~a~~ai~~l-~~~~~~g~~l~v~~~~~ 112 (147)
..+.+|+++++|.+.++|++|++.+ ++..+.| .+.+.++..
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 3467899999999999999999999 9999999 888887764
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=91.99 E-value=0.57 Score=36.51 Aligned_cols=55 Identities=20% Similarity=0.247 Sum_probs=43.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhc
Q 032107 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMD 96 (147)
Q Consensus 34 ~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~ 96 (147)
..+++-.+|..+...+|.++|+.+|. ..|.++.+. .|||.|.+.+.|..++..+.
T Consensus 440 ~~vl~v~f~~~~~~~~i~~~fs~fg~-v~V~widdt-------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVTFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEECCTTCCHHHHHHHGGGGCC-CEEEECSSS-------EEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEeCCCCCCHHHHHHHHHhcCC-EEEEEEcCC-------eEEEEECCHHHHHHHHHHHH
Confidence 33444458889999999999999984 456665542 69999999999999999875
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=83.38 E-value=3.5 Score=22.95 Aligned_cols=60 Identities=12% Similarity=0.198 Sum_probs=36.6
Q ss_pred CCCCHHHHHHHhhccCC-----eeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeec
Q 032107 43 WGTDDSSLKEAFSNFGD-----ITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAN 111 (147)
Q Consensus 43 ~~~~~~~l~~~f~~~g~-----i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 111 (147)
..+...+|..++..-+. |-.|.+.. .|.||+... +.+..+++.|.+..+.++.+.++.++
T Consensus 11 ~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 11 KKIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ----CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred cCCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 34566677777765443 44454432 278888874 56778889999999999998887653
No 223
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=76.53 E-value=0.77 Score=29.44 Aligned_cols=15 Identities=40% Similarity=0.962 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCC
Q 032107 133 RGGYRVNYRGGDDGF 147 (147)
Q Consensus 133 ~~~~~~~~~~~~~g~ 147 (147)
+++++++++++++||
T Consensus 135 r~~~r~~~~~~rGG~ 149 (156)
T 1h2v_Z 135 RDEYRQDYDAGRGGY 149 (156)
T ss_dssp ---------------
T ss_pred CCCccCCCCCCCCCC
Confidence 334444444444443
No 224
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=66.45 E-value=17 Score=21.35 Aligned_cols=59 Identities=12% Similarity=0.143 Sum_probs=45.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCC
Q 032107 32 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQ 98 (147)
Q Consensus 32 ~~~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~ 98 (147)
..+-|.|-|+|..+-..++.-.....|.--.+..+. |-|.+.|.+.++..-|+..|-+.
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkllnh 69 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKLLNH 69 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHHEET
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHHHhc
Confidence 346788889999998888877777777555554432 46999999999999999987544
No 225
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=51.58 E-value=49 Score=21.83 Aligned_cols=57 Identities=12% Similarity=0.107 Sum_probs=37.1
Q ss_pred CeEEEcCCCC-C--------CCHHHHHHHh--hccCCeeEEEEEecCCCCccceEEEEEeC-CHHHHHHHHH
Q 032107 34 TKLFVGGLSW-G--------TDDSSLKEAF--SNFGDITEAKVITERESGKSRGFGFVTYD-SNESASSAQS 93 (147)
Q Consensus 34 ~~i~v~nlp~-~--------~~~~~l~~~f--~~~g~i~~~~~~~~~~~~~~~g~afv~f~-~~~~a~~ai~ 93 (147)
..+.|-|+|. . ....+|++.| ..|..+... .... ...+.|+++|.|. +-.....|+.
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~-~l~~--~~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVR-PLWN--YLGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEE-EEEC--SSBEEEEEEEECCSSHHHHHHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeE-eccc--CCCCceeEEEEecCChHHHHHHHH
Confidence 4666778886 2 2346888866 888776543 3333 2357789999997 4455555655
No 226
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=48.74 E-value=41 Score=20.11 Aligned_cols=64 Identities=8% Similarity=0.168 Sum_probs=43.4
Q ss_pred CCCCCCCHHHHHHHhh-ccCCeeEEEEEecCCCCccceEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 032107 40 GLSWGTDDSSLKEAFS-NFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAND 112 (147)
Q Consensus 40 nlp~~~~~~~l~~~f~-~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~ 112 (147)
.++..+..++|+.-.. .||....+.+... ...|-..+-++.++||+.|+.. -..+.|+|-+..+
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~--------EllIpl~sQeDLDkaIellDrs-s~~kSLrIlL~~~ 87 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDRS-IHMKSLKILLVIN 87 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHSSCEEEEECSS--------SSCEECCSHHHHHHHHHHHHHC-SSCCSEEEEEEEC
T ss_pred eccCCccHHHHHHHHHHHhCCeeeEEEecc--------eEEEeccCHHHHHHHHHHHccC-CcccceEEEEecC
Confidence 4567778887766654 4787777766522 4678889999999999987754 3334455544443
No 227
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=29.33 E-value=60 Score=22.79 Aligned_cols=32 Identities=13% Similarity=0.270 Sum_probs=24.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEE
Q 032107 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVI 66 (147)
Q Consensus 34 ~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~ 66 (147)
..+.|.|+|+.++..-|..++.. ..+..+.++
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm 142 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFL 142 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEE
Confidence 56789999999999999999877 555544443
No 228
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=27.76 E-value=1.4e+02 Score=22.59 Aligned_cols=10 Identities=30% Similarity=0.248 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 032107 85 NESASSAQSA 94 (147)
Q Consensus 85 ~~~a~~ai~~ 94 (147)
.+..+.|..+
T Consensus 151 F~~~e~A~~A 160 (437)
T 3pgw_S 151 YEHERDMHSA 160 (437)
T ss_pred eccHHHHHHH
Confidence 3333444443
No 229
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=26.86 E-value=23 Score=25.07 Aligned_cols=34 Identities=12% Similarity=0.165 Sum_probs=25.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEe
Q 032107 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVIT 67 (147)
Q Consensus 34 ~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~ 67 (147)
..+.|.|||+.++..-|..++.....+..+.++.
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~ 148 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFML 148 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEe
Confidence 4567899999999999999987654455544443
No 230
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=22.89 E-value=69 Score=22.11 Aligned_cols=30 Identities=17% Similarity=0.233 Sum_probs=21.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEE
Q 032107 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEA 63 (147)
Q Consensus 34 ~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~ 63 (147)
..+.|+|+|+.++...+..++.....+..+
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~~~~~~ 120 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTDAIADM 120 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGGGEEEE
T ss_pred ceEEEECCCCCccHHHHHHHHhcCCCcceE
Confidence 457789999999988888888754334443
No 231
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=26.79 E-value=20 Score=21.60 Aligned_cols=60 Identities=18% Similarity=0.122 Sum_probs=33.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCccc-eEEEEEeCCHHHHHHHHHHhcC
Q 032107 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSR-GFGFVTYDSNESASSAQSAMDG 97 (147)
Q Consensus 34 ~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~-g~afv~f~~~~~a~~ai~~l~~ 97 (147)
.+|-|.... +.+++..+..+.. +..+.+......++.- -.-+=.|.+.++|.+|++.|..
T Consensus 26 YTLQL~a~~---~~~~l~~f~~~~~-l~~~~v~~t~rnGk~WyvVlyG~Y~s~~~A~~A~~~LP~ 86 (106)
T 2lfv_A 26 YTLQLSSSS---NYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPA 86 (106)
Confidence 444444333 4556666666654 3334333322222221 2233578999999999998874
No 232
>2dzr_A General transcription factor II-I repeat domain- containing protein 1; RSGI RUH-067, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.85 E-value=66 Score=19.06 Aligned_cols=35 Identities=14% Similarity=0.243 Sum_probs=25.5
Q ss_pred CCCCCCeEEEcCCCCCCC--------HHHHHHHhhccCCeeEE
Q 032107 29 MSQSQTKLFVGGLSWGTD--------DSSLKEAFSNFGDITEA 63 (147)
Q Consensus 29 ~~~~~~~i~v~nlp~~~~--------~~~l~~~f~~~g~i~~~ 63 (147)
+..+...|+|.+||+.+. -..|+.+++....|.++
T Consensus 37 i~~np~av~V~GLPegIpFr~P~~ygi~~Le~IL~~~~~I~F~ 79 (99)
T 2dzr_A 37 IKSNPGSVIIEGLPPGIPFRKPCTFGSQNLERILAVADKIKFT 79 (99)
T ss_dssp HHHCSSSEEEESCCTTCCSSCGGGSCHHHHHHHHHHTTTCEEE
T ss_pred HhcCCCeEEEecCCCCCcccCCCcccHHHHHHHHHhccCcEEE
Confidence 334557899999998764 35778888877777765
No 233
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=20.81 E-value=79 Score=21.74 Aligned_cols=32 Identities=16% Similarity=0.145 Sum_probs=23.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEE
Q 032107 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKV 65 (147)
Q Consensus 34 ~~i~v~nlp~~~~~~~l~~~f~~~g~i~~~~~ 65 (147)
..+.|.|+|+.++...|..++.....+..+.+
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~~~~~~ 127 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCVPLAVF 127 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGCSEEEE
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCCceEEE
Confidence 34778999999999888888876544444333
No 234
>2q2k_A Hypothetical protein; protein-DNA, partition, segregation, PARB, DNA binding protein/DNA complex; HET: DNA 5IU EPE; 3.00A {Staphylococcus aureus}
Probab=20.56 E-value=20 Score=18.82 Aligned_cols=21 Identities=24% Similarity=0.607 Sum_probs=15.1
Q ss_pred EEcCCCCCCCHHHHHHHhhcc
Q 032107 37 FVGGLSWGTDDSSLKEAFSNF 57 (147)
Q Consensus 37 ~v~nlp~~~~~~~l~~~f~~~ 57 (147)
|+.|+|..+....|++.+..|
T Consensus 42 flenvprgtktahirealrry 62 (70)
T 2q2k_A 42 FLENVPRGTKTAHIREALRRY 62 (70)
T ss_dssp HHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHcCCCccchHHHHHHHHHH
Confidence 456888888777777776654
Done!