Your job contains 1 sequence.
>032108
MSWAGPDDVYLSTSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDL
YCDIPLGLYVIRGENVVLIGELDLERDELPPHLTHVSVAEIKRVSALFFSLLFLSLHKRC
CLLTMRYEIMGRSITIQFFLLHIINIF
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 032108
(147 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2087522 - symbol:LSM1B "SM-like 1B" species:37... 466 3.1e-44 1
TAIR|locus:2011246 - symbol:LSM1A "SM-like 1A" species:37... 431 1.6e-40 1
UNIPROTKB|Q5E9Z8 - symbol:LSM1 "U6 snRNA-associated Sm-li... 239 3.5e-20 1
UNIPROTKB|E2R7S6 - symbol:LSM1 "Uncharacterized protein" ... 239 3.5e-20 1
UNIPROTKB|O15116 - symbol:LSM1 "U6 snRNA-associated Sm-li... 239 3.5e-20 1
UNIPROTKB|I3LCU8 - symbol:LSM1 "Uncharacterized protein" ... 239 3.5e-20 1
MGI|MGI:1914457 - symbol:Lsm1 "LSM1 homolog, U6 small nuc... 239 3.5e-20 1
POMBASE|SPBC3D6.08c - symbol:lsm1 "mRNA decapping complex... 238 4.4e-20 1
RGD|1304967 - symbol:Lsm1 "LSM1 homolog, U6 small nuclear... 238 4.4e-20 1
FB|FBgn0261067 - symbol:LSm1 species:7227 "Drosophila mel... 235 9.2e-20 1
DICTYBASE|DDB_G0279837 - symbol:lsm1 "LSM (like-Sm) domai... 228 5.1e-19 1
ZFIN|ZDB-GENE-040801-68 - symbol:lsm1 "LSM1 homolog, U6 s... 227 6.5e-19 1
WB|WBGene00003076 - symbol:lsm-1 species:6239 "Caenorhabd... 215 1.2e-17 1
SGD|S000003660 - symbol:LSM1 "Lsm (Like Sm) protein" spec... 189 6.9e-15 1
CGD|CAL0004008 - symbol:orf19.7290 species:5476 "Candida ... 172 4.4e-13 1
DICTYBASE|DDB_G0288479 - symbol:lsm8 "putative U6 small n... 161 6.4e-12 1
UNIPROTKB|Q3ZCE0 - symbol:NAA38 "N-alpha-acetyltransferas... 160 8.2e-12 1
UNIPROTKB|O95777 - symbol:NAA38 "N-alpha-acetyltransferas... 160 8.2e-12 1
MGI|MGI:1923772 - symbol:Naa38 "N(alpha)-acetyltransferas... 160 8.2e-12 1
UNIPROTKB|E1C962 - symbol:E1C962 "Uncharacterized protein... 151 7.4e-11 1
POMBASE|SPCC1840.10 - symbol:lsm8 "U6 snRNP-associated pr... 151 7.4e-11 1
GENEDB_PFALCIPARUM|MAL8P1.9 - symbol:MAL8P1.9 "u6 snRNA-a... 145 3.2e-10 1
UNIPROTKB|C0H4Y9 - symbol:MAL8P1.9 "U6 snRNA-associated S... 145 3.2e-10 1
FB|FBgn0035271 - symbol:CG2021 species:7227 "Drosophila m... 128 2.0e-08 1
TAIR|locus:2080777 - symbol:AT3G11500 "AT3G11500" species... 121 1.1e-07 1
UNIPROTKB|G4MST0 - symbol:MGG_04539 "Uncharacterized prot... 120 1.4e-07 1
UNIPROTKB|G4MXF4 - symbol:MGG_10740 "Sm snRNP core protei... 115 4.8e-07 1
POMBASE|SPBC4B4.05 - symbol:smg1 "U4/U6 x U5 tri-snRNP co... 115 4.8e-07 1
TAIR|locus:2061446 - symbol:SNRNP-G "AT2G23930" species:3... 114 6.1e-07 1
ASPGD|ASPL0000049189 - symbol:AN1495 species:162425 "Emer... 104 7.0e-06 1
SGD|S000002965 - symbol:SMX2 "Core Sm protein Sm G" speci... 103 9.0e-06 1
ZFIN|ZDB-GENE-040912-105 - symbol:zgc:103688 "zgc:103688"... 103 9.0e-06 1
UNIPROTKB|Q3ZBL0 - symbol:SNRPG "Small nuclear ribonucleo... 102 1.1e-05 1
UNIPROTKB|P62308 - symbol:SNRPG "Small nuclear ribonucleo... 102 1.1e-05 1
UNIPROTKB|F2Z5V2 - symbol:LOC100525867 "Uncharacterized p... 102 1.1e-05 1
RGD|1584713 - symbol:Snrpg "small nuclear ribonucleoprote... 102 1.1e-05 1
FB|FBgn0261791 - symbol:SmG "Small ribonucleoprotein part... 101 1.5e-05 1
UNIPROTKB|G4NLE3 - symbol:MGG_02938 "Uncharacterized prot... 101 1.5e-05 1
SGD|S000003783 - symbol:LSM8 "Lsm (Like Sm) protein" spec... 99 2.4e-05 1
POMBASE|SPCC285.12 - symbol:lsm7 "U6 snRNP-associated pro... 98 3.0e-05 1
TAIR|locus:2056825 - symbol:EMB2816 "AT2G03870" species:3... 98 3.0e-05 1
DICTYBASE|DDB_G0282863 - symbol:snrpG "putative small nuc... 96 5.0e-05 1
WB|WBGene00004920 - symbol:snr-7 species:6239 "Caenorhabd... 96 5.0e-05 1
ZFIN|ZDB-GENE-030131-8284 - symbol:lsm7 "LSM7 homolog, U6... 96 5.0e-05 1
UNIPROTKB|Q9UK45 - symbol:LSM7 "U6 snRNA-associated Sm-li... 95 6.3e-05 1
UNIPROTKB|A8MWD9 - symbol:A8MWD9 "Small nuclear ribonucle... 89 0.00027 1
WB|WBGene00003081 - symbol:lsm-7 species:6239 "Caenorhabd... 87 0.00045 1
UNIPROTKB|Q23543 - symbol:lsm-7 "Protein LSM-7" species:6... 87 0.00045 1
GENEDB_PFALCIPARUM|MAL8P1.48 - symbol:MAL8P1.48 "small nu... 86 0.00057 1
SGD|S000000948 - symbol:LSM5 "Lsm (Like Sm) protein" spec... 86 0.00057 1
>TAIR|locus:2087522 [details] [associations]
symbol:LSM1B "SM-like 1B" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=ISM;ISS] [GO:0005732
"small nucleolar ribonucleoprotein complex" evidence=ISS]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016070 "RNA metabolic process" evidence=IGI]
INTERPRO:IPR001163 EMBL:CP002686 GenomeReviews:BA000014_GR
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HOGENOM:HOG000223544 KO:K12620 eggNOG:COG1958
HSSP:Q8ZYG5 EMBL:AY084768 EMBL:BT002795 EMBL:BT004340
IPI:IPI00537844 RefSeq:NP_566476.1 RefSeq:NP_850580.1
UniGene:At.39294 ProteinModelPortal:Q8LFL8 SMR:Q8LFL8 IntAct:Q8LFL8
STRING:Q8LFL8 PaxDb:Q8LFL8 PRIDE:Q8LFL8 EnsemblPlants:AT3G14080.1
EnsemblPlants:AT3G14080.2 GeneID:820624 KEGG:ath:AT3G14080
TAIR:At3g14080 InParanoid:Q8LFL8 OMA:TEREELP PhylomeDB:Q8LFL8
ProtClustDB:CLSN2687863 ArrayExpress:Q8LFL8 Genevestigator:Q8LFL8
Uniprot:Q8LFL8
Length = 128
Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
Identities = 90/103 (87%), Positives = 97/103 (94%)
Query: 1 MSWAGPDDVYLSTSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDL 60
MSWAGP+++YLSTSLASYLD+KLLVLLRDGRKLMGTL SFDQFANAVLEGACERVIVG+
Sbjct: 1 MSWAGPEEIYLSTSLASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQ 60
Query: 61 YCDIPLGLYVIRGENVVLIGELDLERDELPPHLTHVSVAEIKR 103
YCDIPLGLYVIRGENVVLIGELD ER+ELPPH+ VS AEIKR
Sbjct: 61 YCDIPLGLYVIRGENVVLIGELDTEREELPPHMIRVSEAEIKR 103
>TAIR|locus:2011246 [details] [associations]
symbol:LSM1A "SM-like 1A" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=ISM;ISS] [GO:0005732
"small nucleolar ribonucleoprotein complex" evidence=ISS]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016070 "RNA metabolic process" evidence=IGI]
INTERPRO:IPR001163 EMBL:CP002684 GO:GO:0003676 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 KO:K12620 HSSP:Q8ZYG5 UniGene:At.15081
UniGene:At.22114 ProtClustDB:CLSN2687863 EMBL:AF411792
EMBL:AY094024 IPI:IPI00538869 RefSeq:NP_564072.1
ProteinModelPortal:Q945P8 SMR:Q945P8 STRING:Q945P8 PRIDE:Q945P8
EnsemblPlants:AT1G19120.1 GeneID:838495 KEGG:ath:AT1G19120
TAIR:At1g19120 InParanoid:Q945P8 OMA:AYERVIV PhylomeDB:Q945P8
Genevestigator:Q945P8 Uniprot:Q945P8
Length = 128
Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
Identities = 84/103 (81%), Positives = 92/103 (89%)
Query: 1 MSWAGPDDVYLSTSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDL 60
MSWA PDD++ STSLA+YLDKKLLVLLRDGRKLMG L SFDQFANAVLE A ERVIVGDL
Sbjct: 1 MSWAAPDDIFFSTSLAAYLDKKLLVLLRDGRKLMGLLRSFDQFANAVLEEAYERVIVGDL 60
Query: 61 YCDIPLGLYVIRGENVVLIGELDLERDELPPHLTHVSVAEIKR 103
YCDIPLGLY+IRGENVVLIGELD+E++ELP H+ V AEIKR
Sbjct: 61 YCDIPLGLYIIRGENVVLIGELDVEKEELPAHMVQVPEAEIKR 103
>UNIPROTKB|Q5E9Z8 [details] [associations]
symbol:LSM1 "U6 snRNA-associated Sm-like protein LSm1"
species:9913 "Bos taurus" [GO:0071044 "histone mRNA catabolic
process" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] INTERPRO:IPR001163
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0006397
GO:GO:0003723 GO:GO:0030529 GO:GO:0071044 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
EMBL:BT020738 EMBL:BT020771 EMBL:BT020779 IPI:IPI00696891
RefSeq:NP_001017952.1 UniGene:Bt.2005 ProteinModelPortal:Q5E9Z8
STRING:Q5E9Z8 Ensembl:ENSBTAT00000002113 GeneID:535447
KEGG:bta:535447 CTD:27257 eggNOG:NOG236501
GeneTree:ENSGT00570000079167 HOGENOM:HOG000223544
HOVERGEN:HBG027238 InParanoid:Q5E9Z8 KO:K12620 OMA:IERIHVG
OrthoDB:EOG4BRWN3 NextBio:20876751 ArrayExpress:Q5E9Z8
Uniprot:Q5E9Z8
Length = 133
Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
Identities = 52/90 (57%), Positives = 64/90 (71%)
Query: 12 STSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVI 71
+ SL +DKK LVLLRDGR L+G L S DQFAN VL ER+ VG Y DIP G++V+
Sbjct: 7 TASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVV 66
Query: 72 RGENVVLIGELDLERDELPPHLTHVSVAEI 101
RGENVVL+GE+DLE++ P L VS+ EI
Sbjct: 67 RGENVVLLGEIDLEKESDTP-LQQVSIEEI 95
>UNIPROTKB|E2R7S6 [details] [associations]
symbol:LSM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071044 "histone mRNA catabolic process"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] INTERPRO:IPR001163 GO:GO:0005634
GO:GO:0005737 GO:GO:0071044 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 CTD:27257
GeneTree:ENSGT00570000079167 KO:K12620 OMA:IERIHVG
EMBL:AAEX03010393 RefSeq:XP_532806.3 ProteinModelPortal:E2R7S6
SMR:E2R7S6 PRIDE:E2R7S6 Ensembl:ENSCAFT00000009901 GeneID:475587
KEGG:cfa:475587 NextBio:20851398 Uniprot:E2R7S6
Length = 133
Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
Identities = 52/90 (57%), Positives = 64/90 (71%)
Query: 12 STSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVI 71
+ SL +DKK LVLLRDGR L+G L S DQFAN VL ER+ VG Y DIP G++V+
Sbjct: 7 TASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVV 66
Query: 72 RGENVVLIGELDLERDELPPHLTHVSVAEI 101
RGENVVL+GE+DLE++ P L VS+ EI
Sbjct: 67 RGENVVLLGEIDLEKESDTP-LQQVSIEEI 95
>UNIPROTKB|O15116 [details] [associations]
symbol:LSM1 "U6 snRNA-associated Sm-like protein LSm1"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0000375 "RNA
splicing, via transesterification reactions" evidence=TAS]
[GO:0071044 "histone mRNA catabolic process" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0043928
"exonucleolytic nuclear-transcribed mRNA catabolic process involved
in deadenylation-dependent decay" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 EMBL:AF000177 INTERPRO:IPR001163 GO:GO:0005829
GO:GO:0005634 EMBL:CH471080 GO:GO:0006397 GO:GO:0003723
GO:GO:0030529 GO:GO:0071044 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0000375 GO:GO:0043928 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 CTD:27257 eggNOG:NOG236501 HOGENOM:HOG000223544
HOVERGEN:HBG027238 KO:K12620 OMA:IERIHVG OrthoDB:EOG4BRWN3
EMBL:AJ238094 EMBL:AK312159 EMBL:BC001767 IPI:IPI00004436
RefSeq:NP_055277.1 UniGene:Hs.425311 ProteinModelPortal:O15116
SMR:O15116 DIP:DIP-31130N IntAct:O15116 MINT:MINT-1036791
STRING:O15116 PhosphoSite:O15116 PaxDb:O15116 PeptideAtlas:O15116
PRIDE:O15116 DNASU:27257 Ensembl:ENST00000311351 GeneID:27257
KEGG:hsa:27257 UCSC:uc003xkw.3 GeneCards:GC08M038020
HGNC:HGNC:20472 HPA:HPA024601 MIM:607281 neXtProt:NX_O15116
PharmGKB:PA134864226 InParanoid:O15116 PhylomeDB:O15116
GenomeRNAi:27257 NextBio:50202 ArrayExpress:O15116 Bgee:O15116
CleanEx:HS_LSM1 Genevestigator:O15116 GermOnline:ENSG00000175324
Uniprot:O15116
Length = 133
Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
Identities = 52/90 (57%), Positives = 64/90 (71%)
Query: 12 STSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVI 71
+ SL +DKK LVLLRDGR L+G L S DQFAN VL ER+ VG Y DIP G++V+
Sbjct: 7 TASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVV 66
Query: 72 RGENVVLIGELDLERDELPPHLTHVSVAEI 101
RGENVVL+GE+DLE++ P L VS+ EI
Sbjct: 67 RGENVVLLGEIDLEKESDTP-LQQVSIEEI 95
>UNIPROTKB|I3LCU8 [details] [associations]
symbol:LSM1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071044 "histone mRNA catabolic process" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0005737
GO:GO:0071044 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 GeneTree:ENSGT00570000079167
OMA:IERIHVG EMBL:FP565893 Ensembl:ENSSSCT00000027118 Uniprot:I3LCU8
Length = 133
Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
Identities = 52/90 (57%), Positives = 64/90 (71%)
Query: 12 STSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVI 71
+ SL +DKK LVLLRDGR L+G L S DQFAN VL ER+ VG Y DIP G++V+
Sbjct: 7 TASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVV 66
Query: 72 RGENVVLIGELDLERDELPPHLTHVSVAEI 101
RGENVVL+GE+DLE++ P L VS+ EI
Sbjct: 67 RGENVVLLGEIDLEKESDTP-LQQVSIEEI 95
>MGI|MGI:1914457 [details] [associations]
symbol:Lsm1 "LSM1 homolog, U6 small nuclear RNA associated
(S. cerevisiae)" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0071044 "histone mRNA
catabolic process" evidence=ISO] MGI:MGI:1914457 INTERPRO:IPR001163
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0006397
GO:GO:0003723 GO:GO:0030529 GO:GO:0071044 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
CTD:27257 eggNOG:NOG236501 GeneTree:ENSGT00570000079167
HOGENOM:HOG000223544 HOVERGEN:HBG027238 KO:K12620 OMA:IERIHVG
OrthoDB:EOG4BRWN3 EMBL:BC021460 IPI:IPI00121579 RefSeq:NP_080308.1
UniGene:Mm.30198 ProteinModelPortal:Q8VC85 SMR:Q8VC85 STRING:Q8VC85
PhosphoSite:Q8VC85 REPRODUCTION-2DPAGE:Q8VC85 PaxDb:Q8VC85
PRIDE:Q8VC85 DNASU:67207 Ensembl:ENSMUST00000038421 GeneID:67207
KEGG:mmu:67207 InParanoid:Q8VC85 NextBio:323882 Bgee:Q8VC85
Genevestigator:Q8VC85 GermOnline:ENSMUSG00000037296 Uniprot:Q8VC85
Length = 133
Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
Identities = 52/90 (57%), Positives = 64/90 (71%)
Query: 12 STSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVI 71
+ SL +DKK LVLLRDGR L+G L S DQFAN VL ER+ VG Y DIP G++V+
Sbjct: 7 TASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVV 66
Query: 72 RGENVVLIGELDLERDELPPHLTHVSVAEI 101
RGENVVL+GE+DLE++ P L VS+ EI
Sbjct: 67 RGENVVLLGEIDLEKESDTP-LQQVSIEEI 95
>POMBASE|SPBC3D6.08c [details] [associations]
symbol:lsm1 "mRNA decapping complex subunit (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0000290
"deadenylation-dependent decapping of nuclear-transcribed mRNA"
evidence=ISO] [GO:0000339 "RNA cap binding" evidence=ISO]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=ISO]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0005845 "mRNA
cap binding complex" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] PomBase:SPBC3D6.08c INTERPRO:IPR001163 GO:GO:0005829
GO:GO:0005634 GO:GO:0008380 EMBL:CU329671 GO:GO:0006397
GenomeReviews:CU329671_GR GO:GO:0006396 GO:GO:0000932 GO:GO:0005845
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0000290 Pfam:PF01423
GO:GO:0000339 InterPro:IPR006649 SMART:SM00651 HOGENOM:HOG000223544
KO:K12620 eggNOG:COG1958 PIR:T40368 RefSeq:NP_595520.1
ProteinModelPortal:P87173 STRING:P87173 EnsemblFungi:SPBC3D6.08c.1
GeneID:2540520 KEGG:spo:SPBC3D6.08c OMA:YTIERIY OrthoDB:EOG4GQTF9
NextBio:20801647 Uniprot:P87173
Length = 140
Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
Identities = 44/76 (57%), Positives = 62/76 (81%)
Query: 12 STSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVI 71
S SL Y+D+K++V+LRDG+KL+G L SFDQFAN +L+ ER+ V D+Y DI G+Y++
Sbjct: 13 SGSLVDYVDRKVIVVLRDGKKLIGILRSFDQFANLMLQYTIERIYVDDMYGDIDRGVYIV 72
Query: 72 RGENVVLIGELDLERD 87
RGENVVL+GELDL+++
Sbjct: 73 RGENVVLLGELDLDKE 88
>RGD|1304967 [details] [associations]
symbol:Lsm1 "LSM1 homolog, U6 small nuclear RNA associated (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0071044 "histone mRNA catabolic process"
evidence=IEA;ISO] RGD:1304967 INTERPRO:IPR001163 GO:GO:0005634
GO:GO:0005737 EMBL:CH473970 GO:GO:0071044 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
CTD:27257 GeneTree:ENSGT00570000079167 KO:K12620 OMA:IERIHVG
OrthoDB:EOG4BRWN3 IPI:IPI00359977 RefSeq:NP_001102346.1
UniGene:Rn.128606 Ensembl:ENSRNOT00000020721 GeneID:364624
KEGG:rno:364624 UCSC:RGD:1304967 NextBio:685701 Uniprot:D3ZWB1
Length = 133
Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
Identities = 52/90 (57%), Positives = 64/90 (71%)
Query: 12 STSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVI 71
+ SL +DKK LVLLRDGR L+G L S DQFAN VL ER+ VG Y DIP G++V+
Sbjct: 7 TASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGRKYGDIPRGIFVV 66
Query: 72 RGENVVLIGELDLERDELPPHLTHVSVAEI 101
RGENVVL+GE+DLE++ P L VS+ EI
Sbjct: 67 RGENVVLLGEIDLEKESDTP-LQQVSIEEI 95
>FB|FBgn0261067 [details] [associations]
symbol:LSm1 species:7227 "Drosophila melanogaster"
[GO:0030532 "small nuclear ribonucleoprotein complex" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0006396 "RNA
processing" evidence=ISS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0033962 "cytoplasmic mRNA processing
body assembly" evidence=IMP] INTERPRO:IPR001163 EMBL:AE013599
GO:GO:0005681 GO:GO:0000398 GO:GO:0033962 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0030532 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 CTD:27257 GeneTree:ENSGT00570000079167 KO:K12620
OMA:IERIHVG HSSP:Q8ZYG5 EMBL:BT022249 RefSeq:NP_611559.1
UniGene:Dm.26990 SMR:Q9W2K2 IntAct:Q9W2K2 MINT:MINT-289058
STRING:Q9W2K2 EnsemblMetazoa:FBtr0071628 GeneID:37413
KEGG:dme:Dmel_CG4279 UCSC:CG4279-RA FlyBase:FBgn0261067
InParanoid:Q9W2K2 OrthoDB:EOG4GTHWB GenomeRNAi:37413 NextBio:803505
Uniprot:Q9W2K2
Length = 137
Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
Identities = 50/87 (57%), Positives = 65/87 (74%)
Query: 15 LASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGE 74
L +DKKL+VLLRDGR L+G L S DQFAN VL+ ER+ VG+ Y DIP G+++IRGE
Sbjct: 13 LLEEVDKKLMVLLRDGRTLIGYLRSVDQFANLVLQRTIERIHVGNEYGDIPRGVFIIRGE 72
Query: 75 NVVLIGELDLERDELPPHLTHVSVAEI 101
NVVL+GE+D E+++ P L +SV EI
Sbjct: 73 NVVLLGEIDREKEQKLP-LKEISVDEI 98
>DICTYBASE|DDB_G0279837 [details] [associations]
symbol:lsm1 "LSM (like-Sm) domain-containing protein"
species:44689 "Dictyostelium discoideum" [GO:0006402 "mRNA
catabolic process" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISS] [GO:0000339 "RNA cap binding" evidence=ISS]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
dictyBase:DDB_G0279837 INTERPRO:IPR001163 GO:GO:0005634
GO:GO:0008380 GenomeReviews:CM000152_GR GO:GO:0006397 GO:GO:0000932
GO:GO:0006402 InterPro:IPR010920 SUPFAM:SSF50182 EMBL:AAFI02000033
Pfam:PF01423 GO:GO:0000339 InterPro:IPR006649 SMART:SM00651
KO:K12620 OMA:IERIHVG RefSeq:XP_641509.1 HSSP:O26745
ProteinModelPortal:Q54W83 STRING:Q54W83 EnsemblProtists:DDB0233402
GeneID:8622249 KEGG:ddi:DDB_G0279837 eggNOG:COG1958
ProtClustDB:CLSZ2430662 Uniprot:Q54W83
Length = 129
Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
Identities = 45/93 (48%), Positives = 65/93 (69%)
Query: 11 LSTSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYV 70
+S+ L +DKKL+V+LRDGRK +G + +FDQFAN VL+ ER+ VGD Y D LGL+
Sbjct: 1 MSSGLGDEVDKKLIVVLRDGRKFIGIMRTFDQFANIVLQDTIERIYVGDCYSDKNLGLFF 60
Query: 71 IRGENVVLIGELDLERDELPPHLTHVSVAEIKR 103
IRG+NVV++GE+D +++ L +S EI +
Sbjct: 61 IRGDNVVILGEIDPDKEVQEKKLKKISWDEITK 93
>ZFIN|ZDB-GENE-040801-68 [details] [associations]
symbol:lsm1 "LSM1 homolog, U6 small nuclear RNA
associated (S. cerevisiae)" species:7955 "Danio rerio" [GO:0003674
"molecular_function" evidence=ND] INTERPRO:IPR001163
ZFIN:ZDB-GENE-040801-68 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 CTD:27257
eggNOG:NOG236501 GeneTree:ENSGT00570000079167 HOGENOM:HOG000223544
HOVERGEN:HBG027238 KO:K12620 OMA:IERIHVG OrthoDB:EOG4BRWN3
EMBL:CR931937 EMBL:BC078334 IPI:IPI00505530 RefSeq:NP_001003551.1
UniGene:Dr.76743 STRING:Q6DBW5 Ensembl:ENSDART00000063392
GeneID:445157 KEGG:dre:445157 InParanoid:Q6DBW5 NextBio:20831919
Uniprot:Q6DBW5
Length = 133
Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
Identities = 50/90 (55%), Positives = 63/90 (70%)
Query: 12 STSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVI 71
+ SL +DKK LVLLRDGR L+G L S DQFAN VL ER+ VG + DIP G++V+
Sbjct: 7 TASLIEDIDKKHLVLLRDGRTLIGILRSIDQFANLVLHQTVERIHVGKKFGDIPRGIFVV 66
Query: 72 RGENVVLIGELDLERDELPPHLTHVSVAEI 101
RGENVVL+GE+DL++ E L VS+ EI
Sbjct: 67 RGENVVLLGEVDLDK-ECDQILQRVSIEEI 95
>WB|WBGene00003076 [details] [associations]
symbol:lsm-1 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IDA] INTERPRO:IPR001163
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0000932
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:NOG236501 GeneTree:ENSGT00570000079167
HOGENOM:HOG000223544 KO:K12620 EMBL:Z69302 PIR:T22035
RefSeq:NP_496385.1 HSSP:Q8ZYG5 ProteinModelPortal:Q20229 SMR:Q20229
STRING:Q20229 PaxDb:Q20229 EnsemblMetazoa:F40F8.9 GeneID:174700
KEGG:cel:CELE_F40F8.9 UCSC:F40F8.9 CTD:174700 WormBase:F40F8.9
InParanoid:Q20229 OMA:YYSEISH NextBio:885130 Uniprot:Q20229
Length = 125
Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 51/99 (51%), Positives = 62/99 (62%)
Query: 8 DVYL--STSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIP 65
D YL + SL LDKKLLV+LRDGRKL+G L S DQFAN +LE ER V +C+
Sbjct: 5 DPYLPGAISLFEQLDKKLLVVLRDGRKLIGFLRSIDQFANLILEDVVERTFVEKYFCETG 64
Query: 66 LGLYVIRGENVVLIGELDLERDELPPHLTHVSVAEIKRV 104
G +IRGENV L GE+D D + LT VS E +R+
Sbjct: 65 QGFMLIRGENVELAGEID---DTIETGLTQVSPEEFRRL 100
>SGD|S000003660 [details] [associations]
symbol:LSM1 "Lsm (Like Sm) protein" species:4932
"Saccharomyces cerevisiae" [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0000339 "RNA cap binding"
evidence=IGI;IMP;IPI] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IEA;IMP;IDA] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=IGI;IMP]
[GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IGI;IMP;IPI] [GO:0005845 "mRNA
cap binding complex" evidence=IPI] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] SGD:S000003660 INTERPRO:IPR001163 GO:GO:0005634
EMBL:BK006943 GO:GO:0006397 GO:GO:0000932 GO:GO:0005845
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0000290 Pfam:PF01423
GO:GO:0000339 InterPro:IPR006649 SMART:SM00651
GeneTree:ENSGT00570000079167 HOGENOM:HOG000223544 KO:K12620
eggNOG:COG1958 OrthoDB:EOG4GQTF9 EMBL:Z49399 EMBL:AY558307
PIR:S56905 RefSeq:NP_012411.1 ProteinModelPortal:P47017 SMR:P47017
DIP:DIP-1330N IntAct:P47017 MINT:MINT-390497 STRING:P47017
PaxDb:P47017 PeptideAtlas:P47017 EnsemblFungi:YJL124C GeneID:853318
KEGG:sce:YJL124C CYGD:YJL124c OMA:FMVRGEN NextBio:973666
Genevestigator:P47017 GermOnline:YJL124C Uniprot:P47017
Length = 172
Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
Identities = 34/81 (41%), Positives = 58/81 (71%)
Query: 12 STSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGD--LYCDIPLGLY 69
+ ++ S +D+K+ VLLRDGR L G L +FDQ+AN +L+ ER+ + Y + G++
Sbjct: 43 TAAIVSSVDRKIFVLLRDGRMLFGVLRTFDQYANLILQDCVERIYFSEENKYAEEDRGIF 102
Query: 70 VIRGENVVLIGELDLERDELP 90
+IRGENVV++GE+D+++++ P
Sbjct: 103 MIRGENVVMLGEVDIDKEDQP 123
>CGD|CAL0004008 [details] [associations]
symbol:orf19.7290 species:5476 "Candida albicans" [GO:0000339
"RNA cap binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005845 "mRNA cap binding complex" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IEA] [GO:0000290 "deadenylation-dependent decapping
of nuclear-transcribed mRNA" evidence=IEA] CGD:CAL0004008
INTERPRO:IPR001163 InterPro:IPR010920 SUPFAM:SSF50182
EMBL:AACQ01000069 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
KO:K12620 eggNOG:COG1958 RefSeq:XP_716425.1
ProteinModelPortal:Q5A417 STRING:Q5A417 GeneID:3641913
KEGG:cal:CaO19.7290 Uniprot:Q5A417
Length = 167
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 32/83 (38%), Positives = 57/83 (68%)
Query: 12 STSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGD------LYCDIP 65
+ ++ +D+K+ VLL+DGR L G L +FDQFAN VL+ ER+ +G+ + +
Sbjct: 34 AAAIVGSVDRKIFVLLKDGRNLFGILRTFDQFANLVLQDTLERIYLGEEGEAPTRFSETY 93
Query: 66 LGLYVIRGENVVLIGELDLERDE 88
G++++RGENVV++GE+D++ ++
Sbjct: 94 RGVFMVRGENVVMLGEMDIDTED 116
>DICTYBASE|DDB_G0288479 [details] [associations]
symbol:lsm8 "putative U6 small nuclear
ribonucleoparticle-associated protein" species:44689 "Dictyostelium
discoideum" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=ISS] [GO:0006402 "mRNA
catabolic process" evidence=ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005688 "U6 snRNP" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] dictyBase:DDB_G0288479
INTERPRO:IPR001163 GO:GO:0005730 GenomeReviews:CM000154_GR
GO:GO:0003723 EMBL:AAFI02000111 GO:GO:0006402 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0005732
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:NOG235625 KO:K12627 OMA:NHTVSII RefSeq:XP_001134524.1
ProteinModelPortal:Q1ZXD5 STRING:Q1ZXD5 EnsemblProtists:DDB0233384
GeneID:8626646 KEGG:ddi:DDB_G0288479 Uniprot:Q1ZXD5
Length = 94
Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 36/74 (48%), Positives = 50/74 (67%)
Query: 15 LASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGE 74
L SYL K++LVL DGR ++GTL DQ N VLE ERV + IPLG+++I+G+
Sbjct: 4 LESYLKKQVLVLTADGRSIIGTLRGIDQTINVVLEKCHERVYSDEGIEVIPLGVHLIKGD 63
Query: 75 NVVLIGELDLERDE 88
+V +IGE+D E D+
Sbjct: 64 DVAVIGEVDDELDK 77
>UNIPROTKB|Q3ZCE0 [details] [associations]
symbol:NAA38 "N-alpha-acetyltransferase 38, NatC auxiliary
subunit" species:9913 "Bos taurus" [GO:0005634 "nucleus"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0008380 GO:GO:0006397
GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
GeneTree:ENSGT00570000079167 eggNOG:NOG235625 KO:K12627 OMA:NHTVSII
EMBL:AY644517 EMBL:BC102499 IPI:IPI00714062 RefSeq:NP_001029912.1
UniGene:Bt.73360 ProteinModelPortal:Q3ZCE0 SMR:Q3ZCE0 STRING:Q3ZCE0
Ensembl:ENSBTAT00000016780 GeneID:613630 KEGG:bta:613630 CTD:51691
HOVERGEN:HBG105578 InParanoid:Q3ZCE0 OrthoDB:EOG48SGVN
NextBio:20898677 Uniprot:Q3ZCE0
Length = 96
Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 31/78 (39%), Positives = 53/78 (67%)
Query: 11 LSTSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCD-IPLGLY 69
++++L +Y+++ + V+ DGR ++GTL FDQ N +L+ + ERV + + LGLY
Sbjct: 1 MTSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY 60
Query: 70 VIRGENVVLIGELDLERD 87
++RG+NV +IGE+D E D
Sbjct: 61 IVRGDNVAVIGEIDEETD 78
>UNIPROTKB|O95777 [details] [associations]
symbol:NAA38 "N-alpha-acetyltransferase 38, NatC auxiliary
subunit" species:9606 "Homo sapiens" [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0017070 "U6 snRNA binding" evidence=NAS]
[GO:0005634 "nucleus" evidence=NAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0030529
EMBL:AC006389 GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0017070 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:NOG235625 KO:K12627 OMA:NHTVSII CTD:51691 HOVERGEN:HBG105578
OrthoDB:EOG48SGVN EMBL:AF182294 EMBL:BC002742 EMBL:BC022440
IPI:IPI00219871 RefSeq:NP_057284.1 UniGene:Hs.655046
ProteinModelPortal:O95777 SMR:O95777 DIP:DIP-31195N IntAct:O95777
MINT:MINT-1032595 STRING:O95777 PhosphoSite:O95777 PaxDb:O95777
PeptideAtlas:O95777 PRIDE:O95777 Ensembl:ENST00000249299
GeneID:51691 KEGG:hsa:51691 UCSC:uc003vjg.3 GeneCards:GC07P117824
HGNC:HGNC:20471 HPA:HPA020116 MIM:607288 neXtProt:NX_O95777
PharmGKB:PA165618166 InParanoid:O95777 PhylomeDB:O95777
GenomeRNAi:51691 NextBio:55698 ArrayExpress:O95777 Bgee:O95777
CleanEx:HS_LSM8 Genevestigator:O95777 GermOnline:ENSG00000128534
Uniprot:O95777
Length = 96
Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 31/78 (39%), Positives = 53/78 (67%)
Query: 11 LSTSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCD-IPLGLY 69
++++L +Y+++ + V+ DGR ++GTL FDQ N +L+ + ERV + + LGLY
Sbjct: 1 MTSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY 60
Query: 70 VIRGENVVLIGELDLERD 87
++RG+NV +IGE+D E D
Sbjct: 61 IVRGDNVAVIGEIDEETD 78
>MGI|MGI:1923772 [details] [associations]
symbol:Naa38 "N(alpha)-acetyltransferase 38, NatC auxiliary
subunit" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] MGI:MGI:1923772
INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0008380 GO:GO:0006397
GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
GeneTree:ENSGT00570000079167 eggNOG:NOG235625 KO:K12627 OMA:NHTVSII
CTD:51691 HOVERGEN:HBG105578 OrthoDB:EOG48SGVN EMBL:AK088664
EMBL:AK167674 EMBL:BC019458 IPI:IPI00263042 RefSeq:NP_598700.1
UniGene:Mm.275158 ProteinModelPortal:Q6ZWM4 SMR:Q6ZWM4
STRING:Q6ZWM4 PhosphoSite:Q6ZWM4 PaxDb:Q6ZWM4 PRIDE:Q6ZWM4
DNASU:76522 Ensembl:ENSMUST00000056398 GeneID:76522 KEGG:mmu:76522
UCSC:uc009bao.1 InParanoid:Q6ZWM4 NextBio:345314 Bgee:Q6ZWM4
Genevestigator:Q6ZWM4 GermOnline:ENSMUSG00000044155 Uniprot:Q6ZWM4
Length = 96
Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 31/78 (39%), Positives = 53/78 (67%)
Query: 11 LSTSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCD-IPLGLY 69
++++L +Y+++ + V+ DGR ++GTL FDQ N +L+ + ERV + + LGLY
Sbjct: 1 MTSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY 60
Query: 70 VIRGENVVLIGELDLERD 87
++RG+NV +IGE+D E D
Sbjct: 61 IVRGDNVAVIGEIDEETD 78
>UNIPROTKB|E1C962 [details] [associations]
symbol:E1C962 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0071044 "histone mRNA catabolic
process" evidence=IEA] GO:GO:0005634 GO:GO:0005737 GO:GO:0071044
GeneTree:ENSGT00570000079167 EMBL:AADN02054859 EMBL:AADN02054860
IPI:IPI00588760 Ensembl:ENSGALT00000005131 OMA:QDIDSEC
Uniprot:E1C962
Length = 133
Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
Identities = 37/75 (49%), Positives = 47/75 (62%)
Query: 31 RKLMGTLCSFDQF----ANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDLER 86
+K + T C F F AN VL ER+ VG Y DIP G++V+RGENVVL+GE+DLE+
Sbjct: 22 KKRLKTGCFFLSFFFLSANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVLLGEIDLEK 81
Query: 87 DELPPHLTHVSVAEI 101
E L VS+ EI
Sbjct: 82 -ESDTLLQQVSIEEI 95
>POMBASE|SPCC1840.10 [details] [associations]
symbol:lsm8 "U6 snRNP-associated protein Lsm8
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=NAS] [GO:0006364 "rRNA
processing" evidence=ISS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] PomBase:SPCC1840.10
INTERPRO:IPR001163 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0005681 GO:GO:0003723 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0006364 GO:GO:0030532 GO:GO:0045292 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 PIR:T41178 RefSeq:NP_588509.1
ProteinModelPortal:O74483 IntAct:O74483 STRING:O74483
EnsemblFungi:SPCC1840.10.1 GeneID:2539322 KEGG:spo:SPCC1840.10
eggNOG:NOG235625 HOGENOM:HOG000223549 KO:K12627 OMA:NHTVSII
OrthoDB:EOG48H0D6 NextBio:20800487 Uniprot:O74483
Length = 94
Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
Identities = 30/75 (40%), Positives = 51/75 (68%)
Query: 14 SLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCD-IPLGLYVIR 72
SLA ++++++ V+ DGR ++G+L FD N +L + ER+I D + IPLG+Y++R
Sbjct: 2 SLADFMEQRVQVITNDGRVVLGSLKGFDHTTNLILSDSFERIISMDQDMETIPLGVYLLR 61
Query: 73 GENVVLIGELDLERD 87
GENV ++G ++ E D
Sbjct: 62 GENVAMVGLVNEELD 76
>GENEDB_PFALCIPARUM|MAL8P1.9 [details] [associations]
symbol:MAL8P1.9 "u6 snRNA-associated sm-like
protein, putative" species:5833 "Plasmodium falciparum" [GO:0017070
"U6 snRNA binding" evidence=ISS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] INTERPRO:IPR001163
GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0017070
GO:GO:0005732 EMBL:AL844507 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HOGENOM:HOG000223549 KO:K12627 RefSeq:XP_002808886.1
ProteinModelPortal:C0H4Y9 EnsemblProtists:MAL8P1.9:mRNA
GeneID:2655440 KEGG:pfa:MAL8P1.9 EuPathDB:PlasmoDB:PF3D7_0829300
ProtClustDB:CLSZ2734129 Uniprot:C0H4Y9
Length = 95
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 32/77 (41%), Positives = 46/77 (59%)
Query: 12 STSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVI 71
S ++ SYL+ ++LV+ D R G L FDQ N +L G C I + I LG+Y+I
Sbjct: 3 SINIESYLENEILVITNDSRIFTGKLKGFDQTTNIIL-GNCHERIYKESMEKISLGVYII 61
Query: 72 RGENVVLIGELDLERDE 88
RG+ V LIGE+D + D+
Sbjct: 62 RGDTVTLIGEIDEDVDK 78
>UNIPROTKB|C0H4Y9 [details] [associations]
symbol:MAL8P1.9 "U6 snRNA-associated Sm-like protein,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0005732 "small
nucleolar ribonucleoprotein complex" evidence=ISS] [GO:0017070 "U6
snRNA binding" evidence=ISS] INTERPRO:IPR001163 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0017070 GO:GO:0005732
EMBL:AL844507 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
HOGENOM:HOG000223549 KO:K12627 RefSeq:XP_002808886.1
ProteinModelPortal:C0H4Y9 EnsemblProtists:MAL8P1.9:mRNA
GeneID:2655440 KEGG:pfa:MAL8P1.9 EuPathDB:PlasmoDB:PF3D7_0829300
ProtClustDB:CLSZ2734129 Uniprot:C0H4Y9
Length = 95
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 32/77 (41%), Positives = 46/77 (59%)
Query: 12 STSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVI 71
S ++ SYL+ ++LV+ D R G L FDQ N +L G C I + I LG+Y+I
Sbjct: 3 SINIESYLENEILVITNDSRIFTGKLKGFDQTTNIIL-GNCHERIYKESMEKISLGVYII 61
Query: 72 RGENVVLIGELDLERDE 88
RG+ V LIGE+D + D+
Sbjct: 62 RGDTVTLIGEIDEDVDK 78
>FB|FBgn0035271 [details] [associations]
symbol:CG2021 species:7227 "Drosophila melanogaster"
[GO:0005688 "U6 snRNP" evidence=ISS;NAS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=ISS] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0071011 "precatalytic
spliceosome" evidence=IDA] INTERPRO:IPR001163 EMBL:AE014296
GO:GO:0071011 GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
GeneTree:ENSGT00570000079167 eggNOG:NOG235625 KO:K12627 OMA:NHTVSII
HSSP:P14678 EMBL:BT023632 RefSeq:NP_647660.1 UniGene:Dm.31160
SMR:Q9W087 IntAct:Q9W087 MINT:MINT-302001 STRING:Q9W087
EnsemblMetazoa:FBtr0072791 GeneID:38229 KEGG:dme:Dmel_CG2021
UCSC:CG2021-RA FlyBase:FBgn0035271 InParanoid:Q9W087
OrthoDB:EOG4MCVH1 GenomeRNAi:38229 NextBio:807639 Uniprot:Q9W087
Length = 95
Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 27/72 (37%), Positives = 44/72 (61%)
Query: 13 TSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCD-IPLGLYVI 71
+ L SY++ + ++ DGR +GTL FDQ N +++ ERV + I LGL++I
Sbjct: 2 SGLESYINHTVSIITADGRNFIGTLKGFDQTINIIIDECHERVFSTTSGIEQIVLGLHII 61
Query: 72 RGENVVLIGELD 83
RG+N+ +IG +D
Sbjct: 62 RGDNIAVIGLID 73
>TAIR|locus:2080777 [details] [associations]
symbol:AT3G11500 "AT3G11500" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
INTERPRO:IPR001163 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0005730 GO:GO:0003676 GO:GO:0030529 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:AC008153 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HSSP:O29386 HOGENOM:HOG000223546 KO:K11099
ProtClustDB:CLSN2683015 EMBL:AY062818 EMBL:BT001203 IPI:IPI00542169
RefSeq:NP_187757.1 UniGene:At.27222 ProteinModelPortal:Q9CAX7
SMR:Q9CAX7 STRING:Q9CAX7 PRIDE:Q9CAX7 DNASU:820323
EnsemblPlants:AT3G11500.1 GeneID:820323 KEGG:ath:AT3G11500
TAIR:At3g11500 InParanoid:Q9CAX7 OMA:NIGMVEI PhylomeDB:Q9CAX7
ArrayExpress:Q9CAX7 Genevestigator:Q9CAX7 Uniprot:Q9CAX7
Length = 79
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 29/69 (42%), Positives = 41/69 (59%)
Query: 15 LASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGE 74
L Y+DKKL + L R ++GTL FDQF N V++ E + GD DI G+ VIRG
Sbjct: 10 LKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVE--VNGDDKTDI--GMVVIRGN 65
Query: 75 NVVLIGELD 83
++V + L+
Sbjct: 66 SIVTVEALE 74
>UNIPROTKB|G4MST0 [details] [associations]
symbol:MGG_04539 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] INTERPRO:IPR001163 EMBL:CM001232 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
KO:K12627 RefSeq:XP_003713591.1 ProteinModelPortal:G4MST0
EnsemblFungi:MGG_04539T0 GeneID:2678209 KEGG:mgr:MGG_04539
Uniprot:G4MST0
Length = 101
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 30/76 (39%), Positives = 46/76 (60%)
Query: 15 LASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIV---GDL-YCDIP-LGLY 69
L SY+DK+++++ DGR L+GTL + D AN +L ER I GD D P +G
Sbjct: 5 LNSYVDKRVVIMTTDGRMLIGTLINSDNQANIILYNVTERHIAPADGDEDSVDRPSVGTE 64
Query: 70 VIRGENVVLIGELDLE 85
+IRG ++++G +D E
Sbjct: 65 IIRGSTILVVGLVDEE 80
>UNIPROTKB|G4MXF4 [details] [associations]
symbol:MGG_10740 "Sm snRNP core protein Smg1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] INTERPRO:IPR001163 EMBL:CM001232
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 KO:K11099 RefSeq:XP_003713291.1
ProteinModelPortal:G4MXF4 EnsemblFungi:MGG_10740T0 GeneID:2676245
KEGG:mgr:MGG_10740 Uniprot:G4MXF4
Length = 88
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 27/69 (39%), Positives = 40/69 (57%)
Query: 15 LASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGE 74
L YLDKK+ V L RK++G + +D F N VLE A E G+ + +G VIRG
Sbjct: 8 LKKYLDKKVFVQLNGSRKVVGVVRGYDVFLNIVLEDAFEEKDGGE---KVKIGTVVIRGN 64
Query: 75 NVVLIGELD 83
+VV++ ++
Sbjct: 65 SVVMLEAME 73
>POMBASE|SPBC4B4.05 [details] [associations]
symbol:smg1 "U4/U6 x U5 tri-snRNP complex Sm snRNP core
protein Smg1" species:4896 "Schizosaccharomyces pombe" [GO:0000395
"mRNA 5'-splice site recognition" evidence=IC] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IC] [GO:0005685 "U1
snRNP" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISS]
[GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=ISS]
PomBase:SPBC4B4.05 INTERPRO:IPR001163 GO:GO:0005829 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0005681 GO:GO:0003723
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 GO:GO:0005685
GO:GO:0000395 HOGENOM:HOG000223546 KO:K11099 OMA:DLFLNVV PIR:T40477
RefSeq:NP_596422.1 ProteinModelPortal:O74966 IntAct:O74966
STRING:O74966 EnsemblFungi:SPBC4B4.05.1 GeneID:2540855
KEGG:spo:SPBC4B4.05 OrthoDB:EOG4XWK7N NextBio:20801971
Uniprot:O74966
Length = 77
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 31/83 (37%), Positives = 44/83 (53%)
Query: 1 MSWAGPDDVYLSTSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDL 60
MS AG D L YLD+++ V L RK+ G L +D F N VLE + E + G+
Sbjct: 1 MSKAGAPD------LKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDGE- 53
Query: 61 YCDIPLGLYVIRGENVVLIGELD 83
+ +G IRG +V++I LD
Sbjct: 54 --KVKIGSVAIRGNSVIMIETLD 74
>TAIR|locus:2061446 [details] [associations]
symbol:SNRNP-G "AT2G23930" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005829 "cytosol"
evidence=IDA] INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0008380 GO:GO:0006397
GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
EMBL:AC005170 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 EMBL:BT002035 EMBL:BT006498 EMBL:AY088256
IPI:IPI00541782 PIR:E84630 RefSeq:NP_179971.1 UniGene:At.27766
ProteinModelPortal:O82221 SMR:O82221 STRING:O82221 PRIDE:O82221
EnsemblPlants:AT2G23930.1 GeneID:816925 KEGG:ath:AT2G23930
GeneFarm:4625 TAIR:At2g23930 HOGENOM:HOG000223546 InParanoid:O82221
KO:K11099 OMA:DLFLNVV PhylomeDB:O82221 ProtClustDB:CLSN2683015
Genevestigator:O82221 GermOnline:AT2G23930 Uniprot:O82221
Length = 80
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 28/69 (40%), Positives = 40/69 (57%)
Query: 15 LASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGE 74
L Y+DKKL + L R + GTL FDQF N V++ E + G+ DI G+ VIRG
Sbjct: 10 LKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVE--VNGNDKTDI--GMVVIRGN 65
Query: 75 NVVLIGELD 83
++V + L+
Sbjct: 66 SIVTVEALE 74
>ASPGD|ASPL0000049189 [details] [associations]
symbol:AN1495 species:162425 "Emericella nidulans"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0005685 "U1 snRNP" evidence=IEA] [GO:0071004 "U2-type
prespliceosome" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005682 "U5 snRNP" evidence=IEA] [GO:0046540 "U4/U6 x U5
tri-snRNP complex" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] INTERPRO:IPR001163 EMBL:BN001307 GO:GO:0003676
GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
EMBL:AACD01000023 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
HOGENOM:HOG000223546 KO:K11099 OMA:VVIMEPK OrthoDB:EOG4XWK7N
RefSeq:XP_659099.1 ProteinModelPortal:Q5BD85 STRING:Q5BD85
EnsemblFungi:CADANIAT00008119 GeneID:2874980 KEGG:ani:AN1495.2
Uniprot:Q5BD85
Length = 78
Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 24/69 (34%), Positives = 40/69 (57%)
Query: 15 LASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGE 74
L Y++K++ L RK++G L +D F N VL+ A E G+ + +G+ VIRG
Sbjct: 8 LKKYMEKRVFCELNGNRKVIGVLRGYDVFMNIVLDEAFEEKPGGE---KVAIGMIVIRGN 64
Query: 75 NVVLIGELD 83
+VV++ L+
Sbjct: 65 SVVMLEALE 73
>SGD|S000002965 [details] [associations]
symbol:SMX2 "Core Sm protein Sm G" species:4932
"Saccharomyces cerevisiae" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0071004 "U2-type prespliceosome" evidence=IDA] [GO:0005685 "U1
snRNP" evidence=IDA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=IDA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IDA] SGD:S000002965 INTERPRO:IPR001163 EMBL:D50617
EMBL:BK006940 GO:GO:0005682 GO:GO:0003723 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 EMBL:Z46255 GO:GO:0046540
GO:GO:0071004 EMBL:M20880 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 GO:GO:0005685 HOGENOM:HOG000223546
KO:K11099 GeneTree:ENSGT00510000046985 OMA:VVIMEPK
OrthoDB:EOG4XWK7N EMBL:L31794 EMBL:AY558463 PIR:S48322
RefSeq:NP_116636.1 ProteinModelPortal:P40204 SMR:P40204
DIP:DIP-6683N IntAct:P40204 MINT:MINT-613464 STRING:P40204
PaxDb:P40204 EnsemblFungi:YFL017W-A GeneID:850528
KEGG:sce:YFL017W-A CYGD:YFL017w-a NextBio:966271
Genevestigator:P40204 GermOnline:YFL017W-A Uniprot:P40204
Length = 77
Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 31/76 (40%), Positives = 44/76 (57%)
Query: 11 LST-SLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVG-DLYCDIPLGL 68
+ST L Y+DKK+L+ + RK+ G L +D F N VL+ A E I G D + LGL
Sbjct: 2 VSTPELKKYMDKKILLNINGSRKVAGILRGYDIFLNVVLDDAME--INGEDPANNHQLGL 59
Query: 69 Y-VIRGENVVLIGELD 83
VIRG +++ + LD
Sbjct: 60 QTVIRGNSIISLEALD 75
>ZFIN|ZDB-GENE-040912-105 [details] [associations]
symbol:zgc:103688 "zgc:103688" species:7955 "Danio
rerio" [GO:0003674 "molecular_function" evidence=ND]
INTERPRO:IPR001163 ZFIN:ZDB-GENE-040912-105 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 HOVERGEN:HBG000513 OrthoDB:EOG4BRWND
HOGENOM:HOG000223546 KO:K11099 EMBL:BC081512 IPI:IPI00482230
RefSeq:NP_001004660.2 RefSeq:NP_001161373.1 UniGene:Dr.83589
ProteinModelPortal:Q66I63 STRING:Q66I63 PRIDE:Q66I63 GeneID:447922
KEGG:dre:447922 InParanoid:Q66I63 NextBio:20832442
ArrayExpress:Q66I63 Bgee:Q66I63 Uniprot:Q66I63
Length = 76
Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 23/69 (33%), Positives = 38/69 (55%)
Query: 15 LASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGE 74
L ++DKKL + L GR + G L FD F N V++ E G + +G+ VIRG
Sbjct: 9 LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVVDDTIEMAPGGQMNT---IGMVVIRGN 65
Query: 75 NVVLIGELD 83
+++++ L+
Sbjct: 66 SIIMLEALE 74
>UNIPROTKB|Q3ZBL0 [details] [associations]
symbol:SNRPG "Small nuclear ribonucleoprotein G"
species:9913 "Bos taurus" [GO:0005683 "U7 snRNP" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0006397 GO:GO:0005681
GO:GO:0003723 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
GO:GO:0005683 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
HOVERGEN:HBG000513 OrthoDB:EOG4BRWND KO:K11099 EMBL:BC103236
IPI:IPI00688337 RefSeq:NP_001035633.1 UniGene:Bt.70615
ProteinModelPortal:Q3ZBL0 SMR:Q3ZBL0 STRING:Q3ZBL0 PRIDE:Q3ZBL0
Ensembl:ENSBTAT00000007241 GeneID:522621 KEGG:bta:522621 CTD:6637
GeneTree:ENSGT00510000046985 InParanoid:Q3ZBL0 OMA:ESVEMAP
NextBio:20873564 Uniprot:Q3ZBL0
Length = 76
Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 23/69 (33%), Positives = 37/69 (53%)
Query: 15 LASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGE 74
L ++DKKL + L GR + G L FD F N V++ E G +G+ VIRG
Sbjct: 9 LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQ---QNNIGMVVIRGN 65
Query: 75 NVVLIGELD 83
+++++ L+
Sbjct: 66 SIIMLEALE 74
>UNIPROTKB|P62308 [details] [associations]
symbol:SNRPG "Small nuclear ribonucleoprotein G"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000245 "spliceosomal complex assembly" evidence=NAS]
[GO:0005681 "spliceosomal complex" evidence=TAS] [GO:0008380 "RNA
splicing" evidence=TAS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=NAS] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0005683 "U7 snRNP"
evidence=IDA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0000387 "spliceosomal snRNP assembly"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006369 "termination of
RNA polymerase II transcription" evidence=TAS] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0008334 "histone mRNA metabolic
process" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0034660
"ncRNA metabolic process" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_71 Reactome:REACT_21257
INTERPRO:IPR001163 GO:GO:0005829 EMBL:CH471053 GO:GO:0005654
Reactome:REACT_1675 GO:GO:0003723 GO:GO:0000387 GO:GO:0034660
GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
Reactome:REACT_1788 GO:GO:0000245 GO:GO:0006369 Reactome:REACT_78
GO:GO:0005689 PDB:3S6N PDBsum:3S6N Pfam:PF01423 GO:GO:0008334
GO:GO:0005683 InterPro:IPR006649 SMART:SM00651 HOVERGEN:HBG000513
PDB:2Y9A PDB:2Y9B PDB:2Y9C PDB:2Y9D PDB:3CW1 PDB:3PGW PDBsum:2Y9A
PDBsum:2Y9B PDBsum:2Y9C PDBsum:2Y9D PDBsum:3CW1 PDBsum:3PGW
UniGene:Hs.631639 KO:K11099 CTD:6637 OMA:ESVEMAP EMBL:X85373
EMBL:CR456918 EMBL:AC079338 EMBL:BC000070 EMBL:BC022432
EMBL:BC066302 EMBL:BC070166 EMBL:BC071880 EMBL:BC106055
IPI:IPI00016572 PIR:S55054 RefSeq:NP_003087.1 UniGene:Hs.465167
UniGene:Hs.516076 UniGene:Hs.654528 ProteinModelPortal:P62308
SMR:P62308 DIP:DIP-34627N IntAct:P62308 MINT:MINT-1527983
STRING:P62308 PhosphoSite:P62308 DMDM:59800216 PeptideAtlas:P62308
PRIDE:P62308 DNASU:6637 Ensembl:ENST00000272348 GeneID:6637
KEGG:hsa:6637 UCSC:uc002sgp.3 GeneCards:GC02M070508 HGNC:HGNC:11163
MIM:603542 neXtProt:NX_P62308 PharmGKB:PA36004 InParanoid:P62308
PhylomeDB:P62308 ChiTaRS:SNRPG EvolutionaryTrace:P62308
GenomeRNAi:6637 NextBio:25857 ArrayExpress:P62308 Bgee:P62308
CleanEx:HS_SNRPG Genevestigator:P62308 GermOnline:ENSG00000143977
Uniprot:P62308
Length = 76
Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 23/69 (33%), Positives = 37/69 (53%)
Query: 15 LASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGE 74
L ++DKKL + L GR + G L FD F N V++ E G +G+ VIRG
Sbjct: 9 LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQ---QNNIGMVVIRGN 65
Query: 75 NVVLIGELD 83
+++++ L+
Sbjct: 66 SIIMLEALE 74
>UNIPROTKB|F2Z5V2 [details] [associations]
symbol:LOC100525867 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0005683 "U7 snRNP" evidence=IEA]
INTERPRO:IPR001163 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 KO:K11099
GeneTree:ENSGT00510000046985 OMA:ESVEMAP EMBL:FP476045
RefSeq:XP_003125100.1 UniGene:Ssc.27001 ProteinModelPortal:F2Z5V2
SMR:F2Z5V2 PRIDE:F2Z5V2 Ensembl:ENSSSCT00000031595 GeneID:100525867
KEGG:ssc:100525867 Uniprot:F2Z5V2
Length = 76
Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 23/69 (33%), Positives = 37/69 (53%)
Query: 15 LASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGE 74
L ++DKKL + L GR + G L FD F N V++ E G +G+ VIRG
Sbjct: 9 LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQ---QNNIGMVVIRGN 65
Query: 75 NVVLIGELD 83
+++++ L+
Sbjct: 66 SIIMLEALE 74
>RGD|1584713 [details] [associations]
symbol:Snrpg "small nuclear ribonucleoprotein polypeptide G"
species:10116 "Rattus norvegicus" [GO:0005683 "U7 snRNP"
evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] RGD:1584713 INTERPRO:IPR001163 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:CH473957 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 HOVERGEN:HBG000513 OrthoDB:EOG4BRWND
KO:K11099 CTD:6637 GeneTree:ENSGT00510000046985 OMA:ESVEMAP
EMBL:BC168750 IPI:IPI00211261 RefSeq:NP_001128557.1
RefSeq:XP_001079708.1 RefSeq:XP_003748887.1 UniGene:Rn.2397
SMR:B5DEP7 STRING:B5DEP7 Ensembl:ENSRNOT00000022367 GeneID:681031
GeneID:687679 KEGG:rno:681031 KEGG:rno:687679 UCSC:RGD:1584713
RGD:2321722 NextBio:720014 Genevestigator:B5DEP7 Uniprot:B5DEP7
Length = 76
Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 23/69 (33%), Positives = 37/69 (53%)
Query: 15 LASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGE 74
L ++DKKL + L GR + G L FD F N V++ E G +G+ VIRG
Sbjct: 9 LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQ---QNNIGMVVIRGN 65
Query: 75 NVVLIGELD 83
+++++ L+
Sbjct: 66 SIIMLEALE 74
>FB|FBgn0261791 [details] [associations]
symbol:SmG "Small ribonucleoprotein particle protein SmG"
species:7227 "Drosophila melanogaster" [GO:0005634 "nucleus"
evidence=IDA] [GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=ISS;IDA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS]
[GO:0000245 "spliceosomal complex assembly" evidence=ISS]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] INTERPRO:IPR001163
GO:GO:0007052 EMBL:AE014298 GO:GO:0003723 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0030532 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 KO:K11099 GeneTree:ENSGT00510000046985 OMA:VVIMEPK
EMBL:AY070698 EMBL:AY113538 RefSeq:NP_001138209.1
RefSeq:NP_573139.1 UniGene:Dm.19721 ProteinModelPortal:Q9VXE0
SMR:Q9VXE0 DIP:DIP-20715N IntAct:Q9VXE0 MINT:MINT-288468
STRING:Q9VXE0 PaxDb:Q9VXE0 PRIDE:Q9VXE0 EnsemblMetazoa:FBtr0074377
EnsemblMetazoa:FBtr0112993 GeneID:32636 KEGG:dme:Dmel_CG9742
CTD:32636 FlyBase:FBgn0261791 InParanoid:Q9VXE0 OrthoDB:EOG4GXD4H
PhylomeDB:Q9VXE0 ChiTaRS:SAMD4A GenomeRNAi:32636 NextBio:779578
Bgee:Q9VXE0 GermOnline:CG9742 Uniprot:Q9VXE0
Length = 76
Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 24/66 (36%), Positives = 38/66 (57%)
Query: 18 YLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVV 77
Y+DK++++ L GR + G L FD F N VL+ E + +I G+ VIRG ++V
Sbjct: 12 YMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEEC-KDNTKNNI--GMVVIRGNSIV 68
Query: 78 LIGELD 83
++ LD
Sbjct: 69 MVEALD 74
>UNIPROTKB|G4NLE3 [details] [associations]
symbol:MGG_02938 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] INTERPRO:IPR001163 EMBL:CM001237 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
KO:K12626 InterPro:IPR017132 PIRSF:PIRSF037188
RefSeq:XP_003720770.1 ProteinModelPortal:G4NLE3
EnsemblFungi:MGG_02938T0 GeneID:2682491 KEGG:mgr:MGG_02938
Uniprot:G4NLE3
Length = 146
Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 28/71 (39%), Positives = 39/71 (54%)
Query: 15 LASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACE--RVIVGDLYCDIPLGLYVIR 72
LA Y+DK++ V GR+++GTL +D N VL+ E R G+ PLGL V+R
Sbjct: 61 LAKYMDKEVQVKFNGGREVIGTLKGYDALMNLVLDEVKETMRDEEGN-ESSRPLGLVVVR 119
Query: 73 GENVVLIGELD 83
G +V I D
Sbjct: 120 GTLLVAISPTD 130
>SGD|S000003783 [details] [associations]
symbol:LSM8 "Lsm (Like Sm) protein" species:4932
"Saccharomyces cerevisiae" [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0046540 "U4/U6 x U5 tri-snRNP
complex" evidence=IDA] [GO:0005688 "U6 snRNP" evidence=IDA;TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IPI]
[GO:0003723 "RNA binding" evidence=IDA;IPI] [GO:0006397 "mRNA
processing" evidence=IEA] SGD:S000003783 INTERPRO:IPR001163
GO:GO:0005737 GO:GO:0005730 EMBL:BK006943 EMBL:X87297 GO:GO:0008033
EMBL:X87611 GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0006364 GO:GO:0046540 GO:GO:0005688 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 KO:K12627 OrthoDB:EOG48H0D6
EMBL:Z49522 PIR:S55211 RefSeq:NP_012556.2 ProteinModelPortal:P47093
SMR:P47093 DIP:DIP-903N IntAct:P47093 MINT:MINT-383498
STRING:P47093 PaxDb:P47093 PeptideAtlas:P47093 EnsemblFungi:YJR022W
GeneID:853479 KEGG:sce:YJR022W CYGD:YJR022w eggNOG:NOG258647
HOGENOM:HOG000000816 NextBio:974089 Genevestigator:P47093
GermOnline:YJR022W Uniprot:P47093
Length = 109
Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 25/82 (30%), Positives = 43/82 (52%)
Query: 11 LSTSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYV 70
+S +L YL+K+++++ DG L+ +L FD+ N + R I + C L
Sbjct: 1 MSATLKDYLNKRVVIIKVDGECLIASLNGFDKNTNLFITNVFNR-ISKEFICKAQL---- 55
Query: 71 IRGENVVLIGELDLERDE-LPP 91
+RG + L+G +D E D+ L P
Sbjct: 56 LRGSEIALVGLIDAENDDSLAP 77
>POMBASE|SPCC285.12 [details] [associations]
symbol:lsm7 "U6 snRNP-associated protein Lsm7
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=NAS] [GO:0005688 "U6
snRNP" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006402 "mRNA catabolic process" evidence=ISS] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0030490 "maturation of
SSU-rRNA" evidence=ISO] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISO] [GO:0046540 "U4/U6 x U5 tri-snRNP
complex" evidence=ISO] PomBase:SPCC285.12 INTERPRO:IPR001163
GO:GO:0005829 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0005681
GO:GO:0003723 GO:GO:0008033 GO:GO:0006402 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0030490 GO:GO:0045292
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
PDB:3SWN PDB:4EMK PDBsum:3SWN PDBsum:4EMK eggNOG:NOG276686
KO:K12626 OMA:VLDNTVE InterPro:IPR017132 PIRSF:PIRSF037188
HOGENOM:HOG000223548 PIR:T41258 RefSeq:NP_588340.1
ProteinModelPortal:O74499 STRING:O74499 EnsemblFungi:SPCC285.12.1
GeneID:2538964 KEGG:spo:SPCC285.12 OrthoDB:EOG4BGD5N
EvolutionaryTrace:O74499 NextBio:20800139 Uniprot:O74499
Length = 113
Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 29/80 (36%), Positives = 43/80 (53%)
Query: 15 LASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIV---GDLYCDI-PLGLYV 70
L+ Y D+++ GR++ G L FDQ N VL+ E++ G L I LGL V
Sbjct: 28 LSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVV 87
Query: 71 IRGENVVLIGELDLERDELP 90
+RG +VLI +D +E+P
Sbjct: 88 VRGTTLVLIAPMD-GSEEIP 106
>TAIR|locus:2056825 [details] [associations]
symbol:EMB2816 "AT2G03870" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] INTERPRO:IPR001163
EMBL:CP002685 GenomeReviews:CT485783_GR InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
HSSP:O29386 eggNOG:NOG276686 KO:K12626 OMA:VLDNTVE
InterPro:IPR017132 PIRSF:PIRSF037188 HOGENOM:HOG000223548
EMBL:AC007196 EMBL:BT003087 EMBL:AK227358 IPI:IPI00526989
PIR:B84453 RefSeq:NP_178480.1 RefSeq:NP_849931.1 UniGene:At.41365
ProteinModelPortal:Q9SI54 SMR:Q9SI54 IntAct:Q9SI54 STRING:Q9SI54
PaxDb:Q9SI54 PRIDE:Q9SI54 ProMEX:Q9SI54 DNASU:814913
EnsemblPlants:AT2G03870.1 EnsemblPlants:AT2G03870.2 GeneID:814913
KEGG:ath:AT2G03870 TAIR:At2g03870 InParanoid:Q9SI54
PhylomeDB:Q9SI54 ProtClustDB:CLSN2683856 ArrayExpress:Q9SI54
Genevestigator:Q9SI54 Uniprot:Q9SI54
Length = 99
Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 33/89 (37%), Positives = 45/89 (50%)
Query: 15 LASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGD---LYCDIP--LGLY 69
LA ++DK + V L GR++ GTL +DQ N VL+ A E V D D LGL
Sbjct: 11 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRRLGLI 70
Query: 70 VIRGENVVLIGELDLERDELPPHLTHVSV 98
V RG V+L+ D + P +T +V
Sbjct: 71 VCRGTAVMLVSPTDGTEEIANPFVTAEAV 99
>DICTYBASE|DDB_G0282863 [details] [associations]
symbol:snrpG "putative small nuclear
ribonucleoprotein G" species:44689 "Dictyostelium discoideum"
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
dictyBase:DDB_G0282863 INTERPRO:IPR001163 GO:GO:0005634
GO:GO:0008380 EMBL:AAFI02000047 GenomeReviews:CM000152_GR
GO:GO:0006397 GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
HSSP:O26745 KO:K11099 OMA:VVIMEPK RefSeq:XP_639367.1
ProteinModelPortal:Q54RX0 STRING:Q54RX0 PRIDE:Q54RX0
EnsemblProtists:DDB0233197 GeneID:8623807 KEGG:ddi:DDB_G0282863
eggNOG:NOG244831 Uniprot:Q54RX0
Length = 85
Score = 96 (38.9 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 24/69 (34%), Positives = 36/69 (52%)
Query: 15 LASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGE 74
L LDKKL + L R + G L FD F N L+ E V + Y +G+ +IRG
Sbjct: 11 LTKLLDKKLAIKLNGNRTVHGILRGFDTFMNIALKDTVEVVSPTEKY---EIGMVIIRGN 67
Query: 75 NVVLIGELD 83
+++L+ L+
Sbjct: 68 SILLMEPLE 76
>WB|WBGene00004920 [details] [associations]
symbol:snr-7 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0016246 "RNA interference"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0040027
"negative regulation of vulval development" evidence=IMP]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0043186 "P
granule" evidence=IDA] INTERPRO:IPR001163 GO:GO:0005634
GO:GO:0009792 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0006915 GO:GO:0002119 GO:GO:0016246 GO:GO:0008380
GO:GO:0006397 GO:GO:0040011 GO:GO:0000003 GO:GO:0003723
GO:GO:0040027 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0043186
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
EMBL:FO081276 HOGENOM:HOG000223546 KO:K11099
GeneTree:ENSGT00510000046985 EMBL:AF303264 RefSeq:NP_491032.1
UniGene:Cel.19416 ProteinModelPortal:Q9N4G9 SMR:Q9N4G9
IntAct:Q9N4G9 STRING:Q9N4G9 PaxDb:Q9N4G9 EnsemblMetazoa:Y71F9B.4.1
EnsemblMetazoa:Y71F9B.4.2 GeneID:171834 KEGG:cel:CELE_Y71F9B.4
UCSC:Y71F9B.4 CTD:171834 WormBase:Y71F9B.4 InParanoid:Q9N4G9
OMA:VVIMEPK NextBio:872901 Uniprot:Q9N4G9
Length = 77
Score = 96 (38.9 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 24/65 (36%), Positives = 37/65 (56%)
Query: 15 LASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGE 74
L Y+DK++ + L R++ G L FD F N V++ A E G + LG+ VIRG
Sbjct: 9 LKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKDGG---SVNLGMTVIRGN 65
Query: 75 NVVLI 79
+VV++
Sbjct: 66 SVVIM 70
>ZFIN|ZDB-GENE-030131-8284 [details] [associations]
symbol:lsm7 "LSM7 homolog, U6 small nuclear RNA
associated (S. cerevisiae)" species:7955 "Danio rerio" [GO:0003674
"molecular_function" evidence=ND] INTERPRO:IPR001163
ZFIN:ZDB-GENE-030131-8284 EMBL:BX908398 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:NOG276686 KO:K12626 InterPro:IPR017132 PIRSF:PIRSF037188
CTD:51690 HOVERGEN:HBG000513 OrthoDB:EOG4GB77F
GeneTree:ENSGT00510000047872 EMBL:BC133957 IPI:IPI00610946
RefSeq:NP_001041471.1 UniGene:Dr.10033 STRING:A4FVI7
Ensembl:ENSDART00000081188 GeneID:573047 KEGG:dre:573047
InParanoid:A4FVI7 NextBio:20891033 Uniprot:A4FVI7
Length = 103
Score = 96 (38.9 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 29/70 (41%), Positives = 37/70 (52%)
Query: 15 LASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGD----LYCDI-PLGLY 69
L+ Y+DK + V + GR+ G L FD N VL+G E + D L D LGL
Sbjct: 15 LSKYIDKHIRVKFQGGREASGVLKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLV 74
Query: 70 VIRGENVVLI 79
V RG +VVLI
Sbjct: 75 VCRGTSVVLI 84
>UNIPROTKB|Q9UK45 [details] [associations]
symbol:LSM7 "U6 snRNA-associated Sm-like protein LSm7"
species:9606 "Homo sapiens" [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0017070 "U6 snRNA binding" evidence=NAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=NAS]
[GO:0005634 "nucleus" evidence=NAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_71 Reactome:REACT_21257
EMBL:AF182293 INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0005634
GO:GO:0030529 GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0017070 GO:GO:0043928 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:NOG276686 KO:K12626 OMA:VLDNTVE
InterPro:IPR017132 PIRSF:PIRSF037188 EMBL:AC005258 EMBL:BC018621
IPI:IPI00007163 RefSeq:NP_057283.1 UniGene:Hs.512610
ProteinModelPortal:Q9UK45 SMR:Q9UK45 DIP:DIP-31129N IntAct:Q9UK45
MINT:MINT-1036641 STRING:Q9UK45 PhosphoSite:Q9UK45 DMDM:10720075
PaxDb:Q9UK45 PRIDE:Q9UK45 DNASU:51690 Ensembl:ENST00000252622
GeneID:51690 KEGG:hsa:51690 UCSC:uc002lvp.4 CTD:51690
GeneCards:GC19M002321 HGNC:HGNC:20470 HPA:HPA041850 MIM:607287
neXtProt:NX_Q9UK45 PharmGKB:PA134888612 HOGENOM:HOG000223548
HOVERGEN:HBG000513 OrthoDB:EOG4GB77F GenomeRNAi:51690 NextBio:55694
Bgee:Q9UK45 CleanEx:HS_LSM7 Genevestigator:Q9UK45
GermOnline:ENSG00000130332 Uniprot:Q9UK45
Length = 103
Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 29/70 (41%), Positives = 37/70 (52%)
Query: 15 LASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGD----LYCDI-PLGLY 69
L+ Y+DK + V + GR+ G L FD N VL+G E + D L D LGL
Sbjct: 15 LSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLV 74
Query: 70 VIRGENVVLI 79
V RG +VVLI
Sbjct: 75 VCRGTSVVLI 84
>UNIPROTKB|A8MWD9 [details] [associations]
symbol:A8MWD9 "Small nuclear ribonucleoprotein G-like
protein" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] INTERPRO:IPR001163 GO:GO:0008380
GO:GO:0006397 GO:GO:0005681 GO:GO:0003723 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:AC012318 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 HOVERGEN:HBG000513 EMBL:CK005235
IPI:IPI00745343 UniGene:Hs.631639 ProteinModelPortal:A8MWD9
SMR:A8MWD9 STRING:A8MWD9 PaxDb:A8MWD9 PRIDE:A8MWD9
neXtProt:NX_A8MWD9 InParanoid:A8MWD9 OrthoDB:EOG4BRWND
ArrayExpress:A8MWD9 Bgee:A8MWD9 Genevestigator:A8MWD9
Uniprot:A8MWD9
Length = 76
Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
Identities = 21/69 (30%), Positives = 34/69 (49%)
Query: 15 LASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGE 74
L + DKK + L GR + G L FD F N V++ E G +G+ IRG
Sbjct: 9 LKKFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQ---QKNIGMVEIRGN 65
Query: 75 NVVLIGELD 83
+++++ L+
Sbjct: 66 SIIMLEALE 74
>WB|WBGene00003081 [details] [associations]
symbol:lsm-7 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0042127
"regulation of cell proliferation" evidence=IMP] [GO:0040020
"regulation of meiosis" evidence=IMP] [GO:0008406 "gonad
development" evidence=IMP] [GO:0016477 "cell migration"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
INTERPRO:IPR001163 GO:GO:0008340 GO:GO:0009792 GO:GO:0040007
GO:GO:0016477 GO:GO:0008406 GO:GO:0002119 GO:GO:0042127
GO:GO:0040020 InterPro:IPR010920 SUPFAM:SSF50182 EMBL:Z69385
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 HSSP:O29386
eggNOG:NOG276686 KO:K12626 OMA:VLDNTVE InterPro:IPR017132
PIRSF:PIRSF037188 HOGENOM:HOG000223548 GeneTree:ENSGT00510000047872
PIR:T27926 RefSeq:NP_502034.1 ProteinModelPortal:Q23543 SMR:Q23543
IntAct:Q23543 STRING:Q23543 PaxDb:Q23543 EnsemblMetazoa:ZK593.7.1
EnsemblMetazoa:ZK593.7.2 GeneID:177988 KEGG:cel:CELE_ZK593.7
UCSC:ZK593.7 CTD:177988 WormBase:ZK593.7 InParanoid:Q23543
NextBio:899246 Uniprot:Q23543
Length = 104
Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
Identities = 28/80 (35%), Positives = 40/80 (50%)
Query: 15 LASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERV-------IVGDLYCDIPLG 67
L +LDK++ V + GR+ G L FDQ N VL+ E + +VGD LG
Sbjct: 16 LTRFLDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLRDPQNPSVVGDETRQ--LG 73
Query: 68 LYVIRGENVVLIGELD-LER 86
L V RG + ++ D LE+
Sbjct: 74 LIVARGTAITVVSPADGLEQ 93
>UNIPROTKB|Q23543 [details] [associations]
symbol:lsm-7 "Protein LSM-7" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
INTERPRO:IPR001163 GO:GO:0008340 GO:GO:0009792 GO:GO:0040007
GO:GO:0016477 GO:GO:0008406 GO:GO:0002119 GO:GO:0042127
GO:GO:0040020 InterPro:IPR010920 SUPFAM:SSF50182 EMBL:Z69385
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 HSSP:O29386
eggNOG:NOG276686 KO:K12626 OMA:VLDNTVE InterPro:IPR017132
PIRSF:PIRSF037188 HOGENOM:HOG000223548 GeneTree:ENSGT00510000047872
PIR:T27926 RefSeq:NP_502034.1 ProteinModelPortal:Q23543 SMR:Q23543
IntAct:Q23543 STRING:Q23543 PaxDb:Q23543 EnsemblMetazoa:ZK593.7.1
EnsemblMetazoa:ZK593.7.2 GeneID:177988 KEGG:cel:CELE_ZK593.7
UCSC:ZK593.7 CTD:177988 WormBase:ZK593.7 InParanoid:Q23543
NextBio:899246 Uniprot:Q23543
Length = 104
Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
Identities = 28/80 (35%), Positives = 40/80 (50%)
Query: 15 LASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERV-------IVGDLYCDIPLG 67
L +LDK++ V + GR+ G L FDQ N VL+ E + +VGD LG
Sbjct: 16 LTRFLDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLRDPQNPSVVGDETRQ--LG 73
Query: 68 LYVIRGENVVLIGELD-LER 86
L V RG + ++ D LE+
Sbjct: 74 LIVARGTAITVVSPADGLEQ 93
>GENEDB_PFALCIPARUM|MAL8P1.48 [details] [associations]
symbol:MAL8P1.48 "small nuclear
ribonucleoprotein, putative" species:5833 "Plasmodium falciparum"
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] INTERPRO:IPR001163 GO:GO:0003676 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 EMBL:AL844507 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 HOGENOM:HOG000223546 KO:K11099
OMA:DLFLNVV HSSP:O29885 RefSeq:XP_001349302.1
ProteinModelPortal:Q8IB57 EnsemblProtists:MAL8P1.48:mRNA
GeneID:2655346 KEGG:pfa:MAL8P1.48 EuPathDB:PlasmoDB:PF3D7_0822300
ProtClustDB:CLSZ2432380 Uniprot:Q8IB57
Length = 83
Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 12 STSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVI 71
++ +++K+L + L R+++G L +D F N VL+ E I D DI G+ VI
Sbjct: 11 ASDFRKFMEKRLQIYLNGNRQVVGILRGYDTFMNLVLDNTME--IKKDEQIDI--GVVVI 66
Query: 72 RGENV 76
RG ++
Sbjct: 67 RGNSI 71
>SGD|S000000948 [details] [associations]
symbol:LSM5 "Lsm (Like Sm) protein" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA]
[GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=IDA]
[GO:0005688 "U6 snRNP" evidence=IDA;TAS] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;IDA;IPI]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IPI] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005732 "small
nucleolar ribonucleoprotein complex" evidence=IPI] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=TAS]
SGD:S000000948 INTERPRO:IPR001163 GO:GO:0005730 GO:GO:0003723
EMBL:BK006939 GO:GO:0008033 GO:GO:0000956 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 EMBL:U18917 GO:GO:0006364
GO:GO:0046540 GO:GO:0005732 GO:GO:0005688 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
GeneTree:ENSGT00390000001455 KO:K12624 OMA:CIGSRIW
HOGENOM:HOG000223547 OrthoDB:EOG4FN7TK EMBL:AY557783 PIR:S50649
RefSeq:NP_011073.1 ProteinModelPortal:P40089 SMR:P40089
DIP:DIP-1417N IntAct:P40089 MINT:MINT-383516 STRING:P40089
PaxDb:P40089 EnsemblFungi:YER146W GeneID:856889 KEGG:sce:YER146W
CYGD:YER146w NextBio:983290 Genevestigator:P40089
GermOnline:YER146W Uniprot:P40089
Length = 93
Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 19 LDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVI 56
+++K+L++L+ R+ GTL FD F N +LE A E +I
Sbjct: 16 INQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVEWLI 53
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.329 0.146 0.445 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 147 135 0.00091 102 3 11 22 0.48 30
30 0.44 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 50
No. of states in DFA: 583 (62 KB)
Total size of DFA: 133 KB (2083 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 12.87u 0.06s 12.93t Elapsed: 00:00:26
Total cpu time: 12.88u 0.06s 12.94t Elapsed: 00:00:29
Start: Fri May 10 16:01:15 2013 End: Fri May 10 16:01:44 2013