BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032108
(147 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54W83|LSM1_DICDI Probable U6 snRNA-associated Sm-like protein LSm1 OS=Dictyostelium
discoideum GN=lsm1 PE=3 SV=1
Length = 129
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 68/97 (70%)
Query: 11 LSTSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYV 70
+S+ L +DKKL+V+LRDGRK +G + +FDQFAN VL+ ER+ VGD Y D LGL+
Sbjct: 1 MSSGLGDEVDKKLIVVLRDGRKFIGIMRTFDQFANIVLQDTIERIYVGDCYSDKNLGLFF 60
Query: 71 IRGENVVLIGELDLERDELPPHLTHVSVAEIKRVSAL 107
IRG+NVV++GE+D +++ L +S EI + +AL
Sbjct: 61 IRGDNVVILGEIDPDKEVQEKKLKKISWDEITKAAAL 97
>sp|Q5E9Z8|LSM1_BOVIN U6 snRNA-associated Sm-like protein LSm1 OS=Bos taurus GN=LSM1 PE=2
SV=1
Length = 133
Score = 99.4 bits (246), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 52/90 (57%), Positives = 64/90 (71%), Gaps = 1/90 (1%)
Query: 12 STSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVI 71
+ SL +DKK LVLLRDGR L+G L S DQFAN VL ER+ VG Y DIP G++V+
Sbjct: 7 TASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVV 66
Query: 72 RGENVVLIGELDLERDELPPHLTHVSVAEI 101
RGENVVL+GE+DLE++ P L VS+ EI
Sbjct: 67 RGENVVLLGEIDLEKESDTP-LQQVSIEEI 95
>sp|Q8VC85|LSM1_MOUSE U6 snRNA-associated Sm-like protein LSm1 OS=Mus musculus GN=Lsm1
PE=2 SV=1
Length = 133
Score = 99.4 bits (246), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 52/90 (57%), Positives = 64/90 (71%), Gaps = 1/90 (1%)
Query: 12 STSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVI 71
+ SL +DKK LVLLRDGR L+G L S DQFAN VL ER+ VG Y DIP G++V+
Sbjct: 7 TASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVV 66
Query: 72 RGENVVLIGELDLERDELPPHLTHVSVAEI 101
RGENVVL+GE+DLE++ P L VS+ EI
Sbjct: 67 RGENVVLLGEIDLEKESDTP-LQQVSIEEI 95
>sp|O15116|LSM1_HUMAN U6 snRNA-associated Sm-like protein LSm1 OS=Homo sapiens GN=LSM1
PE=1 SV=1
Length = 133
Score = 99.4 bits (246), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 52/90 (57%), Positives = 64/90 (71%), Gaps = 1/90 (1%)
Query: 12 STSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVI 71
+ SL +DKK LVLLRDGR L+G L S DQFAN VL ER+ VG Y DIP G++V+
Sbjct: 7 TASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVV 66
Query: 72 RGENVVLIGELDLERDELPPHLTHVSVAEI 101
RGENVVL+GE+DLE++ P L VS+ EI
Sbjct: 67 RGENVVLLGEIDLEKESDTP-LQQVSIEEI 95
>sp|P87173|LSM1_SCHPO U6 snRNA-associated Sm-like protein LSm1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=lsm1 PE=3 SV=1
Length = 140
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 71/95 (74%), Gaps = 7/95 (7%)
Query: 12 STSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVI 71
S SL Y+D+K++V+LRDG+KL+G L SFDQFAN +L+ ER+ V D+Y DI G+Y++
Sbjct: 13 SGSLVDYVDRKVIVVLRDGKKLIGILRSFDQFANLMLQYTIERIYVDDMYGDIDRGVYIV 72
Query: 72 RGENVVLIGELDLERDELPPHLTHVSVAEIKRVSA 106
RGENVVL+GELDL+++ + +V +++R+ A
Sbjct: 73 RGENVVLLGELDLDKE-------YDAVKQLRRMPA 100
>sp|P47017|LSM1_YEAST Sm-like protein LSm1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=LSM1 PE=1 SV=1
Length = 172
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 63/95 (66%), Gaps = 9/95 (9%)
Query: 5 GPDDVYL-------STSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIV 57
G D+YL + ++ S +D+K+ VLLRDGR L G L +FDQ+AN +L+ ER+
Sbjct: 29 GEADLYLDQYNFTTTAAIVSSVDRKIFVLLRDGRMLFGVLRTFDQYANLILQDCVERIYF 88
Query: 58 GD--LYCDIPLGLYVIRGENVVLIGELDLERDELP 90
+ Y + G+++IRGENVV++GE+D+++++ P
Sbjct: 89 SEENKYAEEDRGIFMIRGENVVMLGEVDIDKEDQP 123
>sp|Q1ZXD5|NAA38_DICDI N-alpha-acetyltransferase 38, NatC auxiliary subunit
OS=Dictyostelium discoideum GN=lsm8 PE=3 SV=1
Length = 94
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 50/74 (67%)
Query: 15 LASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGE 74
L SYL K++LVL DGR ++GTL DQ N VLE ERV + IPLG+++I+G+
Sbjct: 4 LESYLKKQVLVLTADGRSIIGTLRGIDQTINVVLEKCHERVYSDEGIEVIPLGVHLIKGD 63
Query: 75 NVVLIGELDLERDE 88
+V +IGE+D E D+
Sbjct: 64 DVAVIGEVDDELDK 77
>sp|Q5RCP3|NAA38_PONAB N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Pongo
abelii GN=NAA38 PE=3 SV=3
Length = 96
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 53/78 (67%), Gaps = 1/78 (1%)
Query: 11 LSTSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCD-IPLGLY 69
++++L +Y+++ + V+ DGR ++GTL FDQ N +L+ + ERV + + LGLY
Sbjct: 1 MTSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY 60
Query: 70 VIRGENVVLIGELDLERD 87
++RG+NV +IGE+D E D
Sbjct: 61 IVRGDNVAVIGEIDEETD 78
>sp|Q6ZWM4|NAA38_MOUSE N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Mus
musculus GN=Naa38 PE=3 SV=3
Length = 96
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 53/78 (67%), Gaps = 1/78 (1%)
Query: 11 LSTSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCD-IPLGLY 69
++++L +Y+++ + V+ DGR ++GTL FDQ N +L+ + ERV + + LGLY
Sbjct: 1 MTSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY 60
Query: 70 VIRGENVVLIGELDLERD 87
++RG+NV +IGE+D E D
Sbjct: 61 IVRGDNVAVIGEIDEETD 78
>sp|O95777|NAA38_HUMAN N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Homo
sapiens GN=NAA38 PE=1 SV=3
Length = 96
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 53/78 (67%), Gaps = 1/78 (1%)
Query: 11 LSTSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCD-IPLGLY 69
++++L +Y+++ + V+ DGR ++GTL FDQ N +L+ + ERV + + LGLY
Sbjct: 1 MTSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY 60
Query: 70 VIRGENVVLIGELDLERD 87
++RG+NV +IGE+D E D
Sbjct: 61 IVRGDNVAVIGEIDEETD 78
>sp|Q3ZCE0|NAA38_BOVIN N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Bos
taurus GN=NAA38 PE=3 SV=3
Length = 96
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 53/78 (67%), Gaps = 1/78 (1%)
Query: 11 LSTSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCD-IPLGLY 69
++++L +Y+++ + V+ DGR ++GTL FDQ N +L+ + ERV + + LGLY
Sbjct: 1 MTSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY 60
Query: 70 VIRGENVVLIGELDLERD 87
++RG+NV +IGE+D E D
Sbjct: 61 IVRGDNVAVIGEIDEETD 78
>sp|O74483|LSM8_SCHPO U6 snRNA-associated Sm-like protein LSm8 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=lsm8 PE=3 SV=1
Length = 94
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 56/93 (60%), Gaps = 11/93 (11%)
Query: 14 SLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCD-IPLGLYVIR 72
SLA ++++++ V+ DGR ++G+L FD N +L + ER+I D + IPLG+Y++R
Sbjct: 2 SLADFMEQRVQVITNDGRVVLGSLKGFDHTTNLILSDSFERIISMDQDMETIPLGVYLLR 61
Query: 73 GENVVLIG----ELDLE------RDELPPHLTH 95
GENV ++G ELD E R E P + H
Sbjct: 62 GENVAMVGLVNEELDSEIEWTKIRGEAIPDVVH 94
>sp|P24715|RUXG_MEDSA Probable small nuclear ribonucleoprotein G OS=Medicago sativa
GN=C29 PE=3 SV=1
Length = 81
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Query: 14 SLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRG 73
+L Y+DK+L + L+ R ++GTL FDQF N V++ E + G+ DI G+ VIRG
Sbjct: 9 ALKKYMDKQLQINLKANRMIVGTLRGFDQFMNLVVDNTVE--VNGNEKNDI--GMVVIRG 64
Query: 74 ENVVLIGELD 83
+VV + L+
Sbjct: 65 NSVVTVEALE 74
>sp|O82221|RUXG_ARATH Probable small nuclear ribonucleoprotein G OS=Arabidopsis
thaliana GN=At2g23930 PE=2 SV=1
Length = 80
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 46/84 (54%), Gaps = 11/84 (13%)
Query: 1 MSWAG-PDDVYLSTSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGD 59
MS +G P D L Y+DKKL + L R + GTL FDQF N V++ E + G+
Sbjct: 1 MSRSGQPPD------LKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVE--VNGN 52
Query: 60 LYCDIPLGLYVIRGENVVLIGELD 83
DI G+ VIRG ++V + L+
Sbjct: 53 DKTDI--GMVVIRGNSIVTVEALE 74
>sp|O74966|RUXG_SCHPO Small nuclear ribonucleoprotein G OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=smg1 PE=1 SV=1
Length = 77
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 9/83 (10%)
Query: 1 MSWAGPDDVYLSTSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDL 60
MS AG D L YLD+++ V L RK+ G L +D F N VLE + E + G+
Sbjct: 1 MSKAGAPD------LKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDGE- 53
Query: 61 YCDIPLGLYVIRGENVVLIGELD 83
+ +G IRG +V++I LD
Sbjct: 54 --KVKIGSVAIRGNSVIMIETLD 74
>sp|Q9VXE0|RUXG_DROME Probable small nuclear ribonucleoprotein G OS=Drosophila
melanogaster GN=SmG PE=3 SV=1
Length = 76
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 1 MSWAGPDDVYLSTSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDL 60
MS A P +V Y+DK++++ L GR + G L FD F N VL+ E
Sbjct: 1 MSKAHPPEV------KKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEEC---KD 51
Query: 61 YCDIPLGLYVIRGENVVLIGELD 83
+G+ VIRG ++V++ LD
Sbjct: 52 NTKNNIGMVVIRGNSIVMVEALD 74
>sp|P62309|RUXG_MOUSE Small nuclear ribonucleoprotein G OS=Mus musculus GN=Snrpg PE=1
SV=1
Length = 76
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 1 MSWAGPDDVYLSTSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDL 60
MS A P + L ++DKKL + L GR + G L FD F N V++ E G
Sbjct: 1 MSKAHPPE------LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQ 54
Query: 61 YCDIPLGLYVIRGENVVLIGELD 83
+G+ VIRG +++++ L+
Sbjct: 55 NN---IGMVVIRGNSIIMLEALE 74
>sp|P62308|RUXG_HUMAN Small nuclear ribonucleoprotein G OS=Homo sapiens GN=SNRPG PE=1
SV=1
Length = 76
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 1 MSWAGPDDVYLSTSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDL 60
MS A P + L ++DKKL + L GR + G L FD F N V++ E G
Sbjct: 1 MSKAHPPE------LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQ 54
Query: 61 YCDIPLGLYVIRGENVVLIGELD 83
+G+ VIRG +++++ L+
Sbjct: 55 NN---IGMVVIRGNSIIMLEALE 74
>sp|Q3ZBL0|RUXG_BOVIN Small nuclear ribonucleoprotein G OS=Bos taurus GN=SNRPG PE=3
SV=1
Length = 76
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 1 MSWAGPDDVYLSTSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDL 60
MS A P + L ++DKKL + L GR + G L FD F N V++ E G
Sbjct: 1 MSKAHPPE------LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQ 54
Query: 61 YCDIPLGLYVIRGENVVLIGELD 83
+G+ VIRG +++++ L+
Sbjct: 55 NN---IGMVVIRGNSIIMLEALE 74
>sp|Q9N4G9|RUXG_CAEEL Probable small nuclear ribonucleoprotein G OS=Caenorhabditis
elegans GN=snr-7 PE=3 SV=1
Length = 77
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 14 SLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRG 73
L Y+DK++ + L R++ G L FD F N V++ A E G + LG+ VIRG
Sbjct: 8 ELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKDG---GSVNLGMTVIRG 64
Query: 74 ENVVLI 79
+VV++
Sbjct: 65 NSVVIM 70
>sp|O74499|LSM7_SCHPO U6 snRNA-associated Sm-like protein LSm7 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=lsm7 PE=1 SV=1
Length = 113
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 15 LASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIV---GDLYCDI-PLGLYV 70
L+ Y D+++ GR++ G L FDQ N VL+ E++ G L I LGL V
Sbjct: 28 LSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVV 87
Query: 71 IRGENVVLIGELD 83
+RG +VLI +D
Sbjct: 88 VRGTTLVLIAPMD 100
>sp|P40204|RUXG_YEAST Small nuclear ribonucleoprotein G OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SMX2 PE=1 SV=1
Length = 77
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 12 STSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVG-DLYCDIPLGLY- 69
+ L Y+DKK+L+ + RK+ G L +D F N VL+ A E I G D + LGL
Sbjct: 4 TPELKKYMDKKILLNINGSRKVAGILRGYDIFLNVVLDDAME--INGEDPANNHQLGLQT 61
Query: 70 VIRGENVVLIGELD 83
VIRG +++ + LD
Sbjct: 62 VIRGNSIISLEALD 75
>sp|Q54RX0|RUXG_DICDI Probable small nuclear ribonucleoprotein G OS=Dictyostelium
discoideum GN=snrpG PE=3 SV=1
Length = 85
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 10/82 (12%)
Query: 2 SWAGPDDVYLSTSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLY 61
A PD L LDKKL + L R + G L FD F N L+ E V + Y
Sbjct: 5 KQADPD-------LTKLLDKKLAIKLNGNRTVHGILRGFDTFMNIALKDTVEVVSPTEKY 57
Query: 62 CDIPLGLYVIRGENVVLIGELD 83
+G+ +IRG +++L+ L+
Sbjct: 58 ---EIGMVIIRGNSILLMEPLE 76
>sp|P47093|LSM8_YEAST U6 snRNA-associated Sm-like protein LSm8 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM8 PE=1
SV=2
Length = 109
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 11 LSTSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYV 70
+S +L YL+K+++++ DG L+ +L FD+ N + R I + C L
Sbjct: 1 MSATLKDYLNKRVVIIKVDGECLIASLNGFDKNTNLFITNVFNR-ISKEFICKAQL---- 55
Query: 71 IRGENVVLIGELDLERDE-LPP 91
+RG + L+G +D E D+ L P
Sbjct: 56 LRGSEIALVGLIDAENDDSLAP 77
>sp|C5A1H1|RUXX_THEGJ Putative snRNP Sm-like protein OS=Thermococcus gammatolerans
(strain DSM 15229 / JCM 11827 / EJ3) GN=TGAM_1738 PE=3
SV=1
Length = 76
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 19 LDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVL 78
LDK +LVLL+ G + G L +D N VL GA + D G V+RG+NV+
Sbjct: 13 LDKDVLVLLKRGGEFRGKLIGYDIHLNVVLAGAD---YIQDGEVVKSYGKIVVRGDNVLA 69
Query: 79 IGELDLE 85
I +D+E
Sbjct: 70 ISPVDIE 76
>sp|P40089|LSM5_YEAST U6 snRNA-associated Sm-like protein LSm5 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM5 PE=1
SV=1
Length = 93
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 19 LDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVI 56
+++K+L++L+ R+ GTL FD F N +LE A E +I
Sbjct: 16 INQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVEWLI 53
>sp|Q9UK45|LSM7_HUMAN U6 snRNA-associated Sm-like protein LSm7 OS=Homo sapiens GN=LSM7
PE=1 SV=1
Length = 103
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 14 SLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGD----LYCDI-PLGL 68
L+ Y+DK + V + GR+ G L FD N VL+G E + D L D LGL
Sbjct: 14 DLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGL 73
Query: 69 YVIRGENVVLI 79
V RG +VVLI
Sbjct: 74 VVCRGTSVVLI 84
>sp|Q9CQQ8|LSM7_MOUSE U6 snRNA-associated Sm-like protein LSm7 OS=Mus musculus GN=Lsm7
PE=3 SV=1
Length = 103
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 14 SLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGD----LYCDI-PLGL 68
L+ Y+DK + V + GR+ G L FD N VL+G E + D L D LGL
Sbjct: 14 DLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTMEYMRDPDDQYKLTEDTRQLGL 73
Query: 69 YVIRGENVVLI 79
V RG +VVLI
Sbjct: 74 VVCRGTSVVLI 84
>sp|A8MWD9|RUXGL_HUMAN Small nuclear ribonucleoprotein G-like protein OS=Homo sapiens
PE=2 SV=2
Length = 76
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 1 MSWAGPDDVYLSTSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDL 60
MS A P + L + DKK + L GR + G L FD F N V++ E G
Sbjct: 1 MSKAHPPE------LKKFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQ 54
Query: 61 YCDIPLGLYVIRGENVVLIGELD 83
+G+ IRG +++++ L+
Sbjct: 55 KN---IGMVEIRGNSIIMLEALE 74
>sp|Q9YEQ5|RUXX_AERPE Putative snRNP Sm-like protein OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=APE_0525a PE=3 SV=1
Length = 77
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 4/62 (6%)
Query: 18 YLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVV 77
Y+D +LV L+ G ++ G L ++DQ N +L A E +G+ LGL ++RG++VV
Sbjct: 16 YVDTPVLVKLKSGLRIKGVLKTYDQHLNIILGDAEE---IGETSIR-RLGLTLVRGDSVV 71
Query: 78 LI 79
+I
Sbjct: 72 VI 73
>sp|B6YUU5|RUXX_THEON Putative snRNP Sm-like protein OS=Thermococcus onnurineus (strain
NA1) GN=TON_0644 PE=3 SV=1
Length = 78
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 19 LDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVL 78
LDK +LV+L+ G + G L +D N VL GA E + G++ G VIRG+NV+
Sbjct: 13 LDKDVLVILKKGFEFRGKLIGYDIHLNIVLAGA-EMIQDGEVVK--KYGKIVIRGDNVLA 69
Query: 79 IGELDL 84
I +D+
Sbjct: 70 ISPVDV 75
>sp|Q5JIE0|RUXX_PYRKO Putative snRNP Sm-like protein OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=TK0976 PE=3
SV=1
Length = 76
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 19 LDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVL 78
LDK +LVLL+ G + G L +D N VL A ++ D G VIRG+NV+
Sbjct: 13 LDKDVLVLLKRGNEFRGKLIGYDIHLNVVLADAE---LIQDGEVVKKYGKIVIRGDNVLA 69
Query: 79 IGELDLE 85
+ ++LE
Sbjct: 70 LSPVELE 76
>sp|P40018|RSMB_YEAST Small nuclear ribonucleoprotein-associated protein B
OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SMB1 PE=1 SV=1
Length = 196
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 21/89 (23%)
Query: 9 VYLSTSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGAC--ERVIVGDLYCDIP- 65
V S+ LA+ +D KL VL +DGR +G L +FD+ N VL C ERV L P
Sbjct: 6 VAHSSRLANLIDYKLRVLTQDGRVYIGQLMAFDKHMNLVL-NECIEERVPKTQLDKLRPR 64
Query: 66 -----------------LGLYVIRGENVV 77
LGL ++RGE ++
Sbjct: 65 KDSKDGTTLNIKVEKRVLGLTILRGEQIL 93
>sp|C6A1T2|RUXX_THESM Putative snRNP Sm-like protein OS=Thermococcus sibiricus (strain
MM 739 / DSM 12597) GN=TSIB_0511 PE=3 SV=1
Length = 76
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 19 LDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVL 78
LDK++LV+L+ G + G L +D N VL A ++ + G VIRG+NV+
Sbjct: 13 LDKEVLVILKRGAEYRGKLIGYDIHLNVVLADAQ---LIENGEPKKSYGKIVIRGDNVLA 69
Query: 79 IGELDLE 85
I +++E
Sbjct: 70 ISPVEIE 76
>sp|Q12330|RUXE_YEAST Small nuclear ribonucleoprotein E OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SME1 PE=1 SV=1
Length = 94
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 30 GRKLMGTLCSFDQFANAVLEGACERVIVG-----DLYCDIPLGLYVIRGENVVLIGELD 83
G ++ G + FD+F N V++ A E + D+ PLG +++G+N+ LI D
Sbjct: 36 GIRIKGKIVGFDEFMNVVIDEAVEIPVNSADGKEDVEKGTPLGKILLKGDNITLITSAD 94
>sp|P53905|LSM7_YEAST U6 snRNA-associated Sm-like protein LSm7 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM7 PE=1
SV=2
Length = 115
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 15 LASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDI--------PL 66
LA Y D K+ V L G+ ++G L +DQ N VL+ E + D + L
Sbjct: 30 LAKYKDSKIRVKLMGGKLVIGVLKGYDQLMNLVLDDTVEYMSNPDDENNTELISKNARKL 89
Query: 67 GLYVIRG 73
GL VIRG
Sbjct: 90 GLTVIRG 96
>sp|Q10163|RSMB_SCHPO Small nuclear ribonucleoprotein-associated protein B
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=smb1 PE=1 SV=1
Length = 147
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Query: 12 STSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACE-------RVIVGDLYCDI 64
+T + S L+ L V +DGR +G L +FD F N VL E V +Y +
Sbjct: 3 TTKMVSLLNHSLNVTTKDGRTFVGQLLAFDGFMNLVLSDCQEYRHIKKQNVPSNSVYEEK 62
Query: 65 P-LGLYVIRGENVV 77
LGL ++RGE +V
Sbjct: 63 RMLGLVILRGEFIV 76
>sp|O26745|RUXX_METTH Putative snRNP Sm-like protein OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_649 PE=1 SV=1
Length = 81
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 14 SLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRG 73
+L + L+ +++ L+ R+ G L SFD N VL A E + D LG +IRG
Sbjct: 17 ALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEE---LEDGEVTRRLGTVLIRG 73
Query: 74 ENVVLI 79
+N+V I
Sbjct: 74 DNIVYI 79
>sp|Q55A45|RSMB_DICDI Small nuclear ribonucleoprotein-associated protein B
OS=Dictyostelium discoideum GN=snrpb PE=3 SV=1
Length = 274
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 12 STSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACE-RVIVG----DLYCDIPL 66
S+ + Y++ ++ V ++DGR ++G +FD+ N V+ A E R I D L
Sbjct: 7 SSKMLQYINYRMRVTIQDGRVIVGRFLAFDKHMNVVICDAEEFRRIRQKGKEDREEKRTL 66
Query: 67 GLYVIRGENVV 77
G+ +IRGE VV
Sbjct: 67 GMILIRGETVV 77
>sp|Q9PV94|RSMB_CHICK Small nuclear ribonucleoprotein-associated protein B' OS=Gallus
gallus GN=SNRPB PE=2 SV=1
Length = 240
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 9 VYLSTSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIP--- 65
V S+ + ++D ++ +L+DGR +GT +FD+ N +L E + P
Sbjct: 3 VGKSSKMLQHIDYRMRCILQDGRVFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPERE 62
Query: 66 ----LGLYVIRGENVV 77
LGL ++RGEN+V
Sbjct: 63 EKRVLGLVLLRGENLV 78
>sp|Q1ZXK3|LSM3_DICDI Probable U6 snRNA-associated Sm-like protein LSm3
OS=Dictyostelium discoideum GN=lsm3 PE=3 SV=1
Length = 97
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 10/72 (13%)
Query: 19 LDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACE--RVIVGDLYCDIP--------LGL 68
LD+++ V +R R+L G L ++DQ N +L E +V+ D D + +
Sbjct: 20 LDERIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIKVVEKDEETDEEIIRNIKRNIKM 79
Query: 69 YVIRGENVVLIG 80
+RG+ V+LI
Sbjct: 80 LFVRGDGVILIS 91
>sp|P63164|RSMN_RAT Small nuclear ribonucleoprotein-associated protein N OS=Rattus
norvegicus GN=Snrpn PE=2 SV=1
Length = 240
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 9 VYLSTSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIP--- 65
V S+ + ++D ++ +L+DGR +GT +FD+ N +L E + P
Sbjct: 3 VGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPERE 62
Query: 66 ----LGLYVIRGENVV 77
LGL ++RGEN+V
Sbjct: 63 EKRVLGLVLLRGENLV 78
>sp|Q5R6I0|RSMN_PONAB Small nuclear ribonucleoprotein-associated protein N OS=Pongo
abelii GN=SNRPN PE=2 SV=1
Length = 240
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 9 VYLSTSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIP--- 65
V S+ + ++D ++ +L+DGR +GT +FD+ N +L E + P
Sbjct: 3 VGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPERE 62
Query: 66 ----LGLYVIRGENVV 77
LGL ++RGEN+V
Sbjct: 63 EKRVLGLVLLRGENLV 78
>sp|P63163|RSMN_MOUSE Small nuclear ribonucleoprotein-associated protein N OS=Mus
musculus GN=Snrpn PE=2 SV=1
Length = 240
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 9 VYLSTSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIP--- 65
V S+ + ++D ++ +L+DGR +GT +FD+ N +L E + P
Sbjct: 3 VGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPERE 62
Query: 66 ----LGLYVIRGENVV 77
LGL ++RGEN+V
Sbjct: 63 EKRVLGLVLLRGENLV 78
>sp|Q60HD3|RSMN_MACFA Small nuclear ribonucleoprotein-associated protein N OS=Macaca
fascicularis GN=SNRPN PE=2 SV=1
Length = 240
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 9 VYLSTSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIP--- 65
V S+ + ++D ++ +L+DGR +GT +FD+ N +L E + P
Sbjct: 3 VGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPERE 62
Query: 66 ----LGLYVIRGENVV 77
LGL ++RGEN+V
Sbjct: 63 EKRVLGLVLLRGENLV 78
>sp|P63162|RSMN_HUMAN Small nuclear ribonucleoprotein-associated protein N OS=Homo
sapiens GN=SNRPN PE=1 SV=1
Length = 240
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 9 VYLSTSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIP--- 65
V S+ + ++D ++ +L+DGR +GT +FD+ N +L E + P
Sbjct: 3 VGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPERE 62
Query: 66 ----LGLYVIRGENVV 77
LGL ++RGEN+V
Sbjct: 63 EKRVLGLVLLRGENLV 78
>sp|P57743|LSM3_YEAST U6 snRNA-associated Sm-like protein LSm3 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM3 PE=1
SV=1
Length = 89
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 19 LDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERV 55
LD+++ + LR R L+GTL +FD N VL A E +
Sbjct: 12 LDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETI 48
>sp|Q465S1|RUXX_METBF Putative snRNP Sm-like protein OS=Methanosarcina barkeri (strain
Fusaro / DSM 804) GN=Mbar_A3500 PE=3 SV=1
Length = 72
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 15 LASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGE 74
L + LD ++V L+ R+ G L +D N VL+ A E + G++ G VIRG+
Sbjct: 9 LNNALDTPVIVRLKGAREFRGELKGYDIHMNLVLDNA-EELREGEVVSK--FGSVVIRGD 65
Query: 75 NVVLI 79
NVV +
Sbjct: 66 NVVYV 70
>sp|Q05856|RSMB_DROME Small nuclear ribonucleoprotein-associated protein B
OS=Drosophila melanogaster GN=SmB PE=1 SV=1
Length = 199
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 11/75 (14%)
Query: 12 STSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACE--RVIVGDLYCDIP---- 65
+ + +L+ ++ ++L+D R +GT +FD+ N +L G CE R I +P
Sbjct: 6 NNKMIQHLNYRVRIVLQDSRTFIGTFKAFDKHMNLIL-GDCEEFRKIR-SKNSKVPEREE 63
Query: 66 ---LGLYVIRGENVV 77
LG ++RGEN+V
Sbjct: 64 KRVLGFVLLRGENIV 78
>sp|Q17QN3|RSMN_BOVIN Small nuclear ribonucleoprotein-associated protein N OS=Bos
taurus GN=SNRPN PE=2 SV=1
Length = 240
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 9 VYLSTSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIP--- 65
V S+ + ++D ++ +L+DGR +GT +FD+ N +L E + P
Sbjct: 3 VGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPERE 62
Query: 66 ----LGLYVIRGENVV 77
LGL ++RGEN+V
Sbjct: 63 EKRVLGLVLLRGENLV 78
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.330 0.146 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,980,622
Number of Sequences: 539616
Number of extensions: 1994246
Number of successful extensions: 5467
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 5377
Number of HSP's gapped (non-prelim): 89
length of query: 147
length of database: 191,569,459
effective HSP length: 106
effective length of query: 41
effective length of database: 134,370,163
effective search space: 5509176683
effective search space used: 5509176683
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)