Query 032109
Match_columns 147
No_of_seqs 64 out of 66
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 15:38:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032109.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032109hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d8s_A Cellular modulator of i 92.4 0.056 1.9E-06 36.8 1.8 17 130-146 10-26 (80)
2 1x4j_A Ring finger protein 38; 88.7 0.15 5E-06 32.9 1.3 16 131-146 19-34 (75)
3 2ect_A Ring finger protein 126 86.9 0.26 8.9E-06 31.7 1.6 15 132-146 12-26 (78)
4 2ep4_A Ring finger protein 24; 85.9 0.29 9.9E-06 31.2 1.4 14 133-146 13-26 (74)
5 2ea6_A Ring finger protein 4; 84.5 0.32 1.1E-05 30.1 1.1 16 131-146 11-26 (69)
6 2kiz_A E3 ubiquitin-protein li 83.7 0.42 1.4E-05 30.0 1.4 16 131-146 10-25 (69)
7 2ecl_A Ring-box protein 2; RNF 81.8 0.47 1.6E-05 31.4 1.1 13 134-146 14-26 (81)
8 2l0b_A E3 ubiquitin-protein li 81.8 0.37 1.3E-05 32.4 0.6 16 131-146 36-51 (91)
9 2ysj_A Tripartite motif-contai 81.2 0.91 3.1E-05 28.0 2.3 15 132-146 17-31 (63)
10 2ecj_A Tripartite motif-contai 79.5 0.75 2.6E-05 27.6 1.4 15 132-146 12-26 (58)
11 2d8t_A Dactylidin, ring finger 78.7 0.98 3.3E-05 28.6 1.8 15 132-146 12-26 (71)
12 2ysl_A Tripartite motif-contai 77.8 1.3 4.5E-05 27.7 2.2 15 132-146 17-31 (73)
13 3dpl_R Ring-box protein 1; ubi 76.3 0.95 3.3E-05 32.1 1.4 14 133-146 35-48 (106)
14 4a0k_B E3 ubiquitin-protein li 76.2 0.41 1.4E-05 34.9 -0.6 13 134-146 47-59 (117)
15 2ecn_A Ring finger protein 141 75.1 1.2 4.1E-05 27.9 1.5 15 132-146 12-26 (70)
16 2ecw_A Tripartite motif-contai 71.3 1.6 5.5E-05 27.7 1.4 14 133-146 17-30 (85)
17 2djb_A Polycomb group ring fin 70.6 1.6 5.6E-05 27.6 1.3 16 131-146 11-26 (72)
18 2yur_A Retinoblastoma-binding 68.3 2 6.7E-05 27.5 1.3 16 131-146 11-26 (74)
19 2ecv_A Tripartite motif-contai 68.3 2.1 7E-05 27.2 1.4 14 133-146 17-30 (85)
20 2ecy_A TNF receptor-associated 58.1 2.7 9.3E-05 26.0 0.5 14 133-146 13-26 (66)
21 2csy_A Zinc finger protein 183 57.9 4.4 0.00015 26.1 1.6 14 133-146 13-26 (81)
22 2y43_A E3 ubiquitin-protein li 57.6 2.4 8.2E-05 28.4 0.2 14 133-146 20-33 (99)
23 3lrq_A E3 ubiquitin-protein li 51.6 3.4 0.00012 28.0 0.2 14 133-146 20-33 (100)
24 4ayc_A E3 ubiquitin-protein li 51.3 3.5 0.00012 29.5 0.2 14 133-146 51-64 (138)
25 4ap4_A E3 ubiquitin ligase RNF 49.3 4.8 0.00017 27.4 0.7 16 131-146 68-83 (133)
26 3fl2_A E3 ubiquitin-protein li 47.4 4.4 0.00015 28.2 0.2 14 133-146 50-63 (124)
27 2ckl_B Ubiquitin ligase protei 46.1 4 0.00014 29.8 -0.1 14 133-146 52-65 (165)
28 2ecg_A Baculoviral IAP repeat- 39.7 6.2 0.00021 25.3 0.0 14 133-146 23-36 (75)
29 4ic3_A E3 ubiquitin-protein li 38.3 7.5 0.00026 24.9 0.3 13 133-145 22-34 (74)
30 3mjh_B Early endosome antigen 36.8 8.8 0.0003 22.6 0.4 11 136-146 6-16 (34)
31 1z6u_A NP95-like ring finger p 31.6 11 0.00038 27.7 0.2 14 133-146 76-89 (150)
32 2ea5_A Cell growth regulator w 31.5 19 0.00064 23.0 1.3 14 132-145 12-25 (68)
33 1wgm_A Ubiquitin conjugation f 28.6 21 0.00071 24.4 1.2 13 133-145 20-32 (98)
34 2kre_A Ubiquitin conjugation f 24.7 24 0.00081 24.2 0.9 14 132-145 26-39 (100)
35 2bai_A Genome polyprotein; zin 24.3 8 0.00027 22.8 -1.3 7 136-142 17-23 (32)
36 1l8d_A DNA double-strand break 24.2 18 0.00062 24.8 0.3 10 134-143 46-55 (112)
37 2yho_A E3 ubiquitin-protein li 21.1 22 0.00075 23.2 0.2 13 133-145 16-28 (79)
38 4b2v_A S64; toxin, ICK; NMR {S 20.8 22 0.00077 20.6 0.1 8 1-8 16-26 (32)
No 1
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.36 E-value=0.056 Score=36.81 Aligned_cols=17 Identities=24% Similarity=0.405 Sum_probs=13.7
Q ss_pred CCCCcccCCCcccCccc
Q 032109 130 AASEEEDTCPICLEGVV 146 (147)
Q Consensus 130 ~~sEeEDVCPtCLEEYt 146 (147)
...++++.|+|||++|+
T Consensus 10 ~~~~~~~~C~IC~~~~~ 26 (80)
T 2d8s_A 10 ITPSSQDICRICHCEGD 26 (80)
T ss_dssp CCCTTSCCCSSSCCCCC
T ss_pred CCCCCCCCCeEcCcccc
Confidence 34577888999999985
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.74 E-value=0.15 Score=32.88 Aligned_cols=16 Identities=19% Similarity=0.542 Sum_probs=12.4
Q ss_pred CCCcccCCCcccCccc
Q 032109 131 ASEEEDTCPICLEGVV 146 (147)
Q Consensus 131 ~sEeEDVCPtCLEEYt 146 (147)
..++++.|+|||++|.
T Consensus 19 ~~~~~~~C~IC~~~~~ 34 (75)
T 1x4j_A 19 HQSEQTLCVVCMCDFE 34 (75)
T ss_dssp CSSSCCEETTTTEECC
T ss_pred ccCCCCCCeECCcccC
Confidence 3466778999999874
No 3
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=86.87 E-value=0.26 Score=31.74 Aligned_cols=15 Identities=27% Similarity=0.618 Sum_probs=12.2
Q ss_pred CCcccCCCcccCccc
Q 032109 132 SEEEDTCPICLEGVV 146 (147)
Q Consensus 132 sEeEDVCPtCLEEYt 146 (147)
.++++.|||||++|.
T Consensus 12 ~~~~~~C~IC~~~~~ 26 (78)
T 2ect_A 12 VGSGLECPVCKEDYA 26 (78)
T ss_dssp SSSSCCCTTTTSCCC
T ss_pred CCCCCCCeeCCcccc
Confidence 366778999999985
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.87 E-value=0.29 Score=31.18 Aligned_cols=14 Identities=29% Similarity=0.771 Sum_probs=11.6
Q ss_pred CcccCCCcccCccc
Q 032109 133 EEEDTCPICLEGVV 146 (147)
Q Consensus 133 EeEDVCPtCLEEYt 146 (147)
++++.|+|||++|.
T Consensus 13 ~~~~~C~IC~~~~~ 26 (74)
T 2ep4_A 13 NLHELCAVCLEDFK 26 (74)
T ss_dssp CCSCBCSSSCCBCC
T ss_pred CCCCCCcCCCcccC
Confidence 56677999999984
No 5
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.52 E-value=0.32 Score=30.09 Aligned_cols=16 Identities=31% Similarity=0.881 Sum_probs=12.4
Q ss_pred CCCcccCCCcccCccc
Q 032109 131 ASEEEDTCPICLEGVV 146 (147)
Q Consensus 131 ~sEeEDVCPtCLEEYt 146 (147)
..+++..|||||+.|.
T Consensus 11 ~~~~~~~C~IC~~~~~ 26 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYS 26 (69)
T ss_dssp CTTCCCCCTTTCCCHH
T ss_pred CCCCCCCCcccCcccc
Confidence 3466778999999874
No 6
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=83.70 E-value=0.42 Score=30.01 Aligned_cols=16 Identities=31% Similarity=0.748 Sum_probs=12.2
Q ss_pred CCCcccCCCcccCccc
Q 032109 131 ASEEEDTCPICLEGVV 146 (147)
Q Consensus 131 ~sEeEDVCPtCLEEYt 146 (147)
..++++.|||||++|.
T Consensus 10 ~~~~~~~C~IC~~~~~ 25 (69)
T 2kiz_A 10 EEDTEEKCTICLSILE 25 (69)
T ss_dssp STTCCCSBTTTTBCCC
T ss_pred cCCCCCCCeeCCcccc
Confidence 3456677999999874
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.83 E-value=0.47 Score=31.40 Aligned_cols=13 Identities=54% Similarity=0.897 Sum_probs=9.4
Q ss_pred cccCCCcccCccc
Q 032109 134 EEDTCPICLEGVV 146 (147)
Q Consensus 134 eEDVCPtCLEEYt 146 (147)
++|.|+|||++++
T Consensus 14 ~~~~C~IC~~~~~ 26 (81)
T 2ecl_A 14 ECDTCAICRVQVM 26 (81)
T ss_dssp CCSCBTTTTBCTT
T ss_pred CCCCCcccChhhh
Confidence 4566888888773
No 8
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=81.81 E-value=0.37 Score=32.44 Aligned_cols=16 Identities=44% Similarity=0.775 Sum_probs=12.6
Q ss_pred CCCcccCCCcccCccc
Q 032109 131 ASEEEDTCPICLEGVV 146 (147)
Q Consensus 131 ~sEeEDVCPtCLEEYt 146 (147)
..++++.|||||++|.
T Consensus 36 ~~~~~~~C~IC~~~~~ 51 (91)
T 2l0b_A 36 AVGQEMCCPICCSEYV 51 (91)
T ss_dssp SSSSCSEETTTTEECC
T ss_pred ccCCCCCCcccChhhc
Confidence 3467778999999874
No 9
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.18 E-value=0.91 Score=27.96 Aligned_cols=15 Identities=47% Similarity=0.897 Sum_probs=12.1
Q ss_pred CCcccCCCcccCccc
Q 032109 132 SEEEDTCPICLEGVV 146 (147)
Q Consensus 132 sEeEDVCPtCLEEYt 146 (147)
.+++..||||++.+.
T Consensus 17 ~~~~~~C~IC~~~~~ 31 (63)
T 2ysj_A 17 LQEEVICPICLDILQ 31 (63)
T ss_dssp CCCCCBCTTTCSBCS
T ss_pred CccCCCCCcCCchhC
Confidence 367788999999874
No 10
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.53 E-value=0.75 Score=27.56 Aligned_cols=15 Identities=33% Similarity=0.727 Sum_probs=12.0
Q ss_pred CCcccCCCcccCccc
Q 032109 132 SEEEDTCPICLEGVV 146 (147)
Q Consensus 132 sEeEDVCPtCLEEYt 146 (147)
.+++..||||++.|.
T Consensus 12 ~~~~~~C~IC~~~~~ 26 (58)
T 2ecj_A 12 LQVEASCSVCLEYLK 26 (58)
T ss_dssp SCCCCBCSSSCCBCS
T ss_pred cccCCCCccCCcccC
Confidence 356778999999875
No 11
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.69 E-value=0.98 Score=28.64 Aligned_cols=15 Identities=40% Similarity=0.709 Sum_probs=11.8
Q ss_pred CCcccCCCcccCccc
Q 032109 132 SEEEDTCPICLEGVV 146 (147)
Q Consensus 132 sEeEDVCPtCLEEYt 146 (147)
.+++..|||||+.+.
T Consensus 12 ~~~~~~C~IC~~~~~ 26 (71)
T 2d8t_A 12 SLTVPECAICLQTCV 26 (71)
T ss_dssp SSSCCBCSSSSSBCS
T ss_pred CCCCCCCccCCcccC
Confidence 356677999999874
No 12
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.76 E-value=1.3 Score=27.75 Aligned_cols=15 Identities=47% Similarity=0.897 Sum_probs=11.4
Q ss_pred CCcccCCCcccCccc
Q 032109 132 SEEEDTCPICLEGVV 146 (147)
Q Consensus 132 sEeEDVCPtCLEEYt 146 (147)
.+++..||||++.|.
T Consensus 17 ~~~~~~C~IC~~~~~ 31 (73)
T 2ysl_A 17 LQEEVICPICLDILQ 31 (73)
T ss_dssp CCCCCBCTTTCSBCS
T ss_pred CccCCEeccCCcccC
Confidence 356677999998874
No 13
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=76.27 E-value=0.95 Score=32.10 Aligned_cols=14 Identities=29% Similarity=0.667 Sum_probs=11.4
Q ss_pred CcccCCCcccCccc
Q 032109 133 EEEDTCPICLEGVV 146 (147)
Q Consensus 133 EeEDVCPtCLEEYt 146 (147)
-++|+|+||+++|.
T Consensus 35 ~~~d~CaIC~~~~~ 48 (106)
T 3dpl_R 35 IVVDNCAICRNHIM 48 (106)
T ss_dssp SCSCCCSSSCSCTT
T ss_pred CCCCCCccCChhHh
Confidence 35678999999985
No 14
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=76.21 E-value=0.41 Score=34.93 Aligned_cols=13 Identities=31% Similarity=0.787 Sum_probs=1.1
Q ss_pred cccCCCcccCccc
Q 032109 134 EEDTCPICLEGVV 146 (147)
Q Consensus 134 eEDVCPtCLEEYt 146 (147)
++|+|+|||++|.
T Consensus 47 ~~d~CaICl~~~~ 59 (117)
T 4a0k_B 47 VVDNCAICRNHIM 59 (117)
T ss_dssp CC-----------
T ss_pred CCCcCeECChhhc
Confidence 5578999999985
No 15
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.12 E-value=1.2 Score=27.89 Aligned_cols=15 Identities=33% Similarity=0.906 Sum_probs=11.8
Q ss_pred CCcccCCCcccCccc
Q 032109 132 SEEEDTCPICLEGVV 146 (147)
Q Consensus 132 sEeEDVCPtCLEEYt 146 (147)
.+++..|||||+.+.
T Consensus 12 ~~~~~~C~IC~~~~~ 26 (70)
T 2ecn_A 12 LTDEEECCICMDGRA 26 (70)
T ss_dssp CCCCCCCSSSCCSCC
T ss_pred CCCCCCCeeCCcCcc
Confidence 356678999999874
No 16
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=71.34 E-value=1.6 Score=27.72 Aligned_cols=14 Identities=64% Similarity=1.092 Sum_probs=11.5
Q ss_pred CcccCCCcccCccc
Q 032109 133 EEEDTCPICLEGVV 146 (147)
Q Consensus 133 EeEDVCPtCLEEYt 146 (147)
+++..||||++.|.
T Consensus 17 ~~~~~C~IC~~~~~ 30 (85)
T 2ecw_A 17 KEEVTCPICLELLK 30 (85)
T ss_dssp CTTTSCTTTCSCCS
T ss_pred ccCCCCcCCChhhC
Confidence 56678999999874
No 17
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.60 E-value=1.6 Score=27.63 Aligned_cols=16 Identities=19% Similarity=0.312 Sum_probs=12.5
Q ss_pred CCCcccCCCcccCccc
Q 032109 131 ASEEEDTCPICLEGVV 146 (147)
Q Consensus 131 ~sEeEDVCPtCLEEYt 146 (147)
..+++..||||++.+.
T Consensus 11 ~~~~~~~C~IC~~~~~ 26 (72)
T 2djb_A 11 ELTPYILCSICKGYLI 26 (72)
T ss_dssp CCCGGGSCTTTSSCCS
T ss_pred hcCCCCCCCCCChHHH
Confidence 3467788999999874
No 18
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=68.29 E-value=2 Score=27.54 Aligned_cols=16 Identities=25% Similarity=0.447 Sum_probs=12.5
Q ss_pred CCCcccCCCcccCccc
Q 032109 131 ASEEEDTCPICLEGVV 146 (147)
Q Consensus 131 ~sEeEDVCPtCLEEYt 146 (147)
..+++..||||++.|.
T Consensus 11 ~~~~~~~C~IC~~~~~ 26 (74)
T 2yur_A 11 PIPDELLCLICKDIMT 26 (74)
T ss_dssp CSCGGGSCSSSCCCCT
T ss_pred cCCCCCCCcCCChHHh
Confidence 3467788999999874
No 19
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.28 E-value=2.1 Score=27.19 Aligned_cols=14 Identities=64% Similarity=1.132 Sum_probs=11.4
Q ss_pred CcccCCCcccCccc
Q 032109 133 EEEDTCPICLEGVV 146 (147)
Q Consensus 133 EeEDVCPtCLEEYt 146 (147)
+++..||||++.|.
T Consensus 17 ~~~~~C~IC~~~~~ 30 (85)
T 2ecv_A 17 KEEVTCPICLELLT 30 (85)
T ss_dssp CCCCCCTTTCSCCS
T ss_pred cCCCCCCCCCcccC
Confidence 56677999999874
No 20
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.09 E-value=2.7 Score=26.03 Aligned_cols=14 Identities=21% Similarity=0.453 Sum_probs=11.2
Q ss_pred CcccCCCcccCccc
Q 032109 133 EEEDTCPICLEGVV 146 (147)
Q Consensus 133 EeEDVCPtCLEEYt 146 (147)
+++..||||++.+.
T Consensus 13 ~~~~~C~IC~~~~~ 26 (66)
T 2ecy_A 13 EDKYKCEKCHLVLC 26 (66)
T ss_dssp CCCEECTTTCCEES
T ss_pred CcCCCCCCCChHhc
Confidence 56677999999764
No 21
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.85 E-value=4.4 Score=26.06 Aligned_cols=14 Identities=29% Similarity=0.418 Sum_probs=11.1
Q ss_pred CcccCCCcccCccc
Q 032109 133 EEEDTCPICLEGVV 146 (147)
Q Consensus 133 EeEDVCPtCLEEYt 146 (147)
+++-.||||++.|.
T Consensus 13 ~~~~~C~IC~~~~~ 26 (81)
T 2csy_A 13 EIPFRCFICRQAFQ 26 (81)
T ss_dssp CCCSBCSSSCSBCC
T ss_pred CCCCCCcCCCchhc
Confidence 55667999999874
No 22
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=57.59 E-value=2.4 Score=28.39 Aligned_cols=14 Identities=29% Similarity=0.555 Sum_probs=11.4
Q ss_pred CcccCCCcccCccc
Q 032109 133 EEEDTCPICLEGVV 146 (147)
Q Consensus 133 EeEDVCPtCLEEYt 146 (147)
+++..||||++.|.
T Consensus 20 ~~~~~C~IC~~~~~ 33 (99)
T 2y43_A 20 DDLLRCGICFEYFN 33 (99)
T ss_dssp HHHTBCTTTCSBCS
T ss_pred CCCCCcccCChhhC
Confidence 56677999999874
No 23
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=51.58 E-value=3.4 Score=28.01 Aligned_cols=14 Identities=36% Similarity=0.603 Sum_probs=11.2
Q ss_pred CcccCCCcccCccc
Q 032109 133 EEEDTCPICLEGVV 146 (147)
Q Consensus 133 EeEDVCPtCLEEYt 146 (147)
+++..|||||+.+.
T Consensus 20 ~~~~~C~IC~~~~~ 33 (100)
T 3lrq_A 20 AEVFRCFICMEKLR 33 (100)
T ss_dssp HHHTBCTTTCSBCS
T ss_pred CCCCCCccCCcccc
Confidence 56677999999874
No 24
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=51.30 E-value=3.5 Score=29.50 Aligned_cols=14 Identities=43% Similarity=0.695 Sum_probs=11.2
Q ss_pred CcccCCCcccCccc
Q 032109 133 EEEDTCPICLEGVV 146 (147)
Q Consensus 133 EeEDVCPtCLEEYt 146 (147)
+++..||||++.|.
T Consensus 51 ~~~~~C~iC~~~~~ 64 (138)
T 4ayc_A 51 ENELQCIICSEYFI 64 (138)
T ss_dssp HHHSBCTTTCSBCS
T ss_pred cccCCCcccCcccC
Confidence 56667999999874
No 25
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=49.26 E-value=4.8 Score=27.40 Aligned_cols=16 Identities=31% Similarity=0.877 Sum_probs=12.4
Q ss_pred CCCcccCCCcccCccc
Q 032109 131 ASEEEDTCPICLEGVV 146 (147)
Q Consensus 131 ~sEeEDVCPtCLEEYt 146 (147)
..+++..|||||++|.
T Consensus 68 i~~~~~~C~iC~~~~~ 83 (133)
T 4ap4_A 68 IGSGTVSCPICMDGYS 83 (133)
T ss_dssp CSSSSCBCTTTCCBHH
T ss_pred cCCCCCCCCCCCCccc
Confidence 3467778999999874
No 26
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=47.39 E-value=4.4 Score=28.24 Aligned_cols=14 Identities=43% Similarity=0.548 Sum_probs=11.5
Q ss_pred CcccCCCcccCccc
Q 032109 133 EEEDTCPICLEGVV 146 (147)
Q Consensus 133 EeEDVCPtCLEEYt 146 (147)
+++..||||++.+.
T Consensus 50 ~~~~~C~IC~~~~~ 63 (124)
T 3fl2_A 50 EETFQCICCQELVF 63 (124)
T ss_dssp HHHTBCTTTSSBCS
T ss_pred ccCCCCCcCChHHc
Confidence 56778999999874
No 27
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=46.12 E-value=4 Score=29.83 Aligned_cols=14 Identities=43% Similarity=0.892 Sum_probs=11.6
Q ss_pred CcccCCCcccCccc
Q 032109 133 EEEDTCPICLEGVV 146 (147)
Q Consensus 133 EeEDVCPtCLEEYt 146 (147)
+++..||||++.|.
T Consensus 52 ~~~~~C~IC~~~~~ 65 (165)
T 2ckl_B 52 HSELMCPICLDMLK 65 (165)
T ss_dssp HHHHBCTTTSSBCS
T ss_pred CCCCCCcccChHhh
Confidence 56778999999875
No 28
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.74 E-value=6.2 Score=25.31 Aligned_cols=14 Identities=36% Similarity=0.949 Sum_probs=10.6
Q ss_pred CcccCCCcccCccc
Q 032109 133 EEEDTCPICLEGVV 146 (147)
Q Consensus 133 EeEDVCPtCLEEYt 146 (147)
+++..||||++.+.
T Consensus 23 ~~~~~C~IC~~~~~ 36 (75)
T 2ecg_A 23 QEEKLCKICMDRNI 36 (75)
T ss_dssp HHHHSCSSSCSSCC
T ss_pred CCCCCCCcCCCCCC
Confidence 45667999998763
No 29
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=38.33 E-value=7.5 Score=24.94 Aligned_cols=13 Identities=38% Similarity=0.943 Sum_probs=10.5
Q ss_pred CcccCCCcccCcc
Q 032109 133 EEEDTCPICLEGV 145 (147)
Q Consensus 133 EeEDVCPtCLEEY 145 (147)
+++..|+||++.+
T Consensus 22 ~~~~~C~iC~~~~ 34 (74)
T 4ic3_A 22 QEEKLCKICMDRN 34 (74)
T ss_dssp HHHTBCTTTSSSB
T ss_pred ccCCCCCCCCCCC
Confidence 5667899999875
No 30
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=36.77 E-value=8.8 Score=22.64 Aligned_cols=11 Identities=27% Similarity=0.803 Sum_probs=8.5
Q ss_pred cCCCcccCccc
Q 032109 136 DTCPICLEGVV 146 (147)
Q Consensus 136 DVCPtCLEEYt 146 (147)
-.||+|+....
T Consensus 6 FiCP~C~~~l~ 16 (34)
T 3mjh_B 6 FICPQCMKSLG 16 (34)
T ss_dssp EECTTTCCEES
T ss_pred cCCcHHHHHcC
Confidence 57999987653
No 31
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=31.56 E-value=11 Score=27.65 Aligned_cols=14 Identities=36% Similarity=0.487 Sum_probs=11.2
Q ss_pred CcccCCCcccCccc
Q 032109 133 EEEDTCPICLEGVV 146 (147)
Q Consensus 133 EeEDVCPtCLEEYt 146 (147)
+++..||||++.|.
T Consensus 76 ~~~~~C~IC~~~~~ 89 (150)
T 1z6u_A 76 EQSFMCVCCQELVY 89 (150)
T ss_dssp HHHTBCTTTSSBCS
T ss_pred ccCCEeecCChhhc
Confidence 56678999999774
No 32
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.50 E-value=19 Score=22.99 Aligned_cols=14 Identities=29% Similarity=0.847 Sum_probs=10.8
Q ss_pred CCcccCCCcccCcc
Q 032109 132 SEEEDTCPICLEGV 145 (147)
Q Consensus 132 sEeEDVCPtCLEEY 145 (147)
.+++..|+|||+..
T Consensus 12 ~~~~~~C~IC~~~~ 25 (68)
T 2ea5_A 12 EENSKDCVVCQNGT 25 (68)
T ss_dssp CCCSSCCSSSSSSC
T ss_pred CCCCCCCCCcCcCC
Confidence 35667899999864
No 33
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=28.55 E-value=21 Score=24.45 Aligned_cols=13 Identities=23% Similarity=0.002 Sum_probs=10.7
Q ss_pred CcccCCCcccCcc
Q 032109 133 EEEDTCPICLEGV 145 (147)
Q Consensus 133 EeEDVCPtCLEEY 145 (147)
.+|-.||||++-+
T Consensus 20 p~~~~CpI~~~~m 32 (98)
T 1wgm_A 20 CDEFLDPIMSTLM 32 (98)
T ss_dssp CTTTBCTTTCSBC
T ss_pred cHhcCCcCccccc
Confidence 6778899999854
No 34
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=24.69 E-value=24 Score=24.23 Aligned_cols=14 Identities=14% Similarity=0.040 Sum_probs=11.1
Q ss_pred CCcccCCCcccCcc
Q 032109 132 SEEEDTCPICLEGV 145 (147)
Q Consensus 132 sEeEDVCPtCLEEY 145 (147)
..++-.||||++-+
T Consensus 26 ~p~~~~CpI~~~~m 39 (100)
T 2kre_A 26 APDEFRDPLMDTLM 39 (100)
T ss_dssp CSTTTBCTTTCSBC
T ss_pred CcHhhCCcCccCcc
Confidence 36788899999854
No 35
>2bai_A Genome polyprotein; zinc finger domain, viruses, cardiovirus, structural genomics, PSI, protein structure initiative; NMR {Mengo virus} SCOP: g.87.1.1
Probab=24.32 E-value=8 Score=22.77 Aligned_cols=7 Identities=43% Similarity=1.379 Sum_probs=5.3
Q ss_pred cCCCccc
Q 032109 136 DTCPICL 142 (147)
Q Consensus 136 DVCPtCL 142 (147)
++||+|-
T Consensus 17 ~~CP~Ct 23 (32)
T 2bai_A 17 EECPKCS 23 (32)
T ss_dssp GGHHHHH
T ss_pred ccccccc
Confidence 5699883
No 36
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=24.21 E-value=18 Score=24.85 Aligned_cols=10 Identities=30% Similarity=1.036 Sum_probs=7.8
Q ss_pred cccCCCcccC
Q 032109 134 EEDTCPICLE 143 (147)
Q Consensus 134 eEDVCPtCLE 143 (147)
+.++||+|--
T Consensus 46 ~g~~CPvCgs 55 (112)
T 1l8d_A 46 AKGKCPVCGR 55 (112)
T ss_dssp CSEECTTTCC
T ss_pred CCCCCCCCCC
Confidence 3788999964
No 37
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=21.11 E-value=22 Score=23.25 Aligned_cols=13 Identities=31% Similarity=0.605 Sum_probs=10.0
Q ss_pred CcccCCCcccCcc
Q 032109 133 EEEDTCPICLEGV 145 (147)
Q Consensus 133 EeEDVCPtCLEEY 145 (147)
+++..|+||++..
T Consensus 16 ~~~~~C~IC~~~~ 28 (79)
T 2yho_A 16 KEAMLCMVCCEEE 28 (79)
T ss_dssp HHHTBCTTTSSSB
T ss_pred CCCCEeEEeCccc
Confidence 4566799999864
No 38
>4b2v_A S64; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=20.83 E-value=22 Score=20.59 Aligned_cols=8 Identities=63% Similarity=1.809 Sum_probs=5.5
Q ss_pred CCC-cc--cCC
Q 032109 1 MGG-CC--CSS 8 (147)
Q Consensus 1 MGg-CC--Css 8 (147)
||- || |..
T Consensus 16 mgdwccgrcir 26 (32)
T 4b2v_A 16 MGDWCCGRCIR 26 (32)
T ss_dssp TCCCCSSEEET
T ss_pred hcchhhhHHHH
Confidence 788 77 544
Done!