BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032111
(147 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SVM8|RBG2_ARATH Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis
thaliana GN=RBG2 PE=1 SV=1
Length = 158
Score = 146 bits (368), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 72/123 (58%), Positives = 97/123 (78%), Gaps = 9/123 (7%)
Query: 1 MAFCGKLGMLVRQN----GQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSN 56
MAFC KLG L+RQN G P S++ ++R MS TKLF+GGLSWGTDD+SL++AF++
Sbjct: 1 MAFCNKLGGLLRQNISSNGNVPVTSMLGSLRLMS---TKLFIGGLSWGTDDASLRDAFAH 57
Query: 57 FGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRP-- 114
FGD+ +AKVI +RE+G+SRGFGFV ++ +A++A S MDG+ELNGR+IRV+ ANDRP
Sbjct: 58 FGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPSA 117
Query: 115 PRS 117
PR+
Sbjct: 118 PRA 120
>sp|Q9LIS2|RBG4_ARATH Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis
thaliana GN=RBG4 PE=2 SV=1
Length = 136
Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 68/123 (55%), Positives = 93/123 (75%), Gaps = 9/123 (7%)
Query: 1 MAFCGKLGMLVRQ----NGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSN 56
MAFC KL ++RQ + P S++ ++R+MS +KLFVGGLSWGTDDSSLK+AF++
Sbjct: 1 MAFCNKLSGILRQGVSQSSNGPVTSMLGSLRYMS---SKLFVGGLSWGTDDSSLKQAFTS 57
Query: 57 FGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR--P 114
FG++TEA VI +RE+G+SRGFGFV++ +SA++A MDG+ELNGR IRV+ A +R
Sbjct: 58 FGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERSSA 117
Query: 115 PRS 117
PRS
Sbjct: 118 PRS 120
>sp|P39697|RT19_ARATH 40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana
GN=RPS19 PE=1 SV=2
Length = 212
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 86/114 (75%), Gaps = 3/114 (2%)
Query: 1 MAFCGKLGMLVRQNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDI 60
MAFC KLG +Q P +S++ ++R+MS TKL++GGLS GTD+ SLK+AFS+F +
Sbjct: 1 MAFCTKLGGHWKQGVNVPVSSMLGSLRYMS---TKLYIGGLSPGTDEHSLKDAFSSFNGV 57
Query: 61 TEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRP 114
TEA+V+T + +G+SRG+GFV + S +SA+SA SAM+GQELNG NI V+ A D P
Sbjct: 58 TEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVAKDWP 111
>sp|Q9FNR1|RBG3_ARATH Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis
thaliana GN=RBG3 PE=2 SV=1
Length = 309
Score = 114 bits (284), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/121 (47%), Positives = 87/121 (71%), Gaps = 10/121 (8%)
Query: 1 MAFCGKLGMLVRQ------NGQAP--KASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKE 52
MAF K G +++Q N Q SL A+R MS S KLF+GG+++ D+ SL+E
Sbjct: 1 MAFLSKFGNILKQTTNKQLNAQVSLSSPSLFQAIRCMSSS--KLFIGGMAYSMDEDSLRE 58
Query: 53 AFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAND 112
AF+ +G++ + +VI +RE+G+SRGFGFVT+ S+E+ASSA A+DG++L+GR ++V++AND
Sbjct: 59 AFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYAND 118
Query: 113 R 113
R
Sbjct: 119 R 119
>sp|Q9C909|RBG5_ARATH Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis
thaliana GN=RBG5 PE=2 SV=1
Length = 289
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 81/114 (71%), Gaps = 5/114 (4%)
Query: 1 MAFCGKLGMLVRQNGQAPKAS--LINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFG 58
MAF K+G L Q AS ++ ++R MS S K+FVGG+S+ TD+ L+EAFS +G
Sbjct: 1 MAFLSKVGRLFSQTSSHVTASSSMLQSIRCMSSS--KIFVGGISYSTDEFGLREAFSKYG 58
Query: 59 DITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFAND 112
++ +AK+I +RE+G+SRGF FVT+ S E AS+A +DGQ+L+GR IRV++A +
Sbjct: 59 EVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ-LDGQDLHGRRIRVNYATE 111
>sp|Q43472|GRP_HORVU Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare
GN=blt801 PE=1 SV=1
Length = 161
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/90 (54%), Positives = 68/90 (75%), Gaps = 2/90 (2%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
M+ + + FVGGL W TDD SL+ AFS +GD+ ++K+IT+RE+G+SRGFGFVT+ S+E+
Sbjct: 1 MADVEYRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAM 60
Query: 89 SSAQSAMDGQELNGRNIRVSFANDRPPRSD 118
A AM+GQ+L+GRNI V+ A R RSD
Sbjct: 61 RQAIEAMNGQDLDGRNITVNEAQSR--RSD 88
>sp|Q03878|GRP1_DAUCA Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1
Length = 157
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 64/82 (78%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
M++ + + FVGGL+W T+D SL++AFS FGDIT++K+I +RE+G+SRGFGFVT+ +S
Sbjct: 1 MAEVEYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSM 60
Query: 89 SSAQSAMDGQELNGRNIRVSFA 110
A M+GQEL+GRNI V+ A
Sbjct: 61 RDAIEGMNGQELDGRNITVNEA 82
>sp|Q9ZUU4|ROC1_ARATH Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana
GN=At2g37220 PE=1 SV=1
Length = 289
Score = 97.1 bits (240), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/82 (53%), Positives = 62/82 (75%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
+++VG LSWG DD +L+ FS G + EA+VI +R+SG+S+GFGFVTYDS++ +A +
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 95 MDGQELNGRNIRVSFANDRPPR 116
+DG +L+GR IRVS A RPPR
Sbjct: 265 LDGADLDGRQIRVSEAEARPPR 286
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
KLFVG L + D + L + F + G++ +VI ++ +G+SRGFGFVT S +A
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 95 MDGQELNGRNIRVSFANDRPPRSDGGYGGG 124
+G EL+GR +RV+ A PP+ + G+ G
Sbjct: 152 FNGYELDGRPLRVN-AGPPPPKREDGFSRG 180
>sp|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 291
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/85 (51%), Positives = 65/85 (76%)
Query: 32 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSA 91
S +++VG LSWG DD +LKE FS G++ +AKV+ +R+SG+SRGFGFVTY S++ + A
Sbjct: 205 SSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDA 264
Query: 92 QSAMDGQELNGRNIRVSFANDRPPR 116
+++G +L+GR+IRVS A +RP R
Sbjct: 265 IDSLNGVDLDGRSIRVSAAEERPRR 289
Score = 72.4 bits (176), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 60/103 (58%), Gaps = 2/103 (1%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
KLFVG L + D ++L F G++ +VI ++ +G+SRGFGFVT + E +A+
Sbjct: 88 KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQ 147
Query: 95 MDGQELNGRNIRVSFANDRPPRSDGGYGGGNDG--SYGGNRGG 135
+G E++GR IRV+ R + +GGG G SYGG R G
Sbjct: 148 FNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDG 190
>sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP31 PE=1 SV=1
Length = 329
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 67/109 (61%)
Query: 8 GMLVRQNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVIT 67
G L+ N AP+ S + + +++VG L W D+ L++ FS G + EA+V+
Sbjct: 218 GRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVY 277
Query: 68 ERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRPPR 116
+RE+G+SRGFGFVT + + A SA+DGQ L GR IRV+ A +RPPR
Sbjct: 278 DRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPPR 326
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 33 QTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQ 92
+ KLFVG L++ + +L F G + A+VI RE+ +SRGFGFVT S + A +A
Sbjct: 149 EAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAV 208
Query: 93 SAMDGQELNGRNIRVSFAN---DRPPRSDGGY 121
+ +LNGR + V+ A RP R+ Y
Sbjct: 209 EKFNRYDLNGRLLTVNKAAPRGSRPERAPRVY 240
>sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 292
Score = 93.6 bits (231), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 44/85 (51%), Positives = 64/85 (75%)
Query: 32 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSA 91
S +++VG LSWG DD +LKE FS G++ +AKV+ +R+SG+SRGFGFVTY S + + A
Sbjct: 206 SSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDA 265
Query: 92 QSAMDGQELNGRNIRVSFANDRPPR 116
+++G +L+GR+IRVS A +RP R
Sbjct: 266 IDSLNGIDLDGRSIRVSAAEERPRR 290
Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 60/103 (58%), Gaps = 2/103 (1%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
KLFVG L + D ++L F G++ +VI ++ SG+SRGFGFVT + E +A+
Sbjct: 89 KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQ 148
Query: 95 MDGQELNGRNIRVSFANDRPPRSDGGYGGGNDG--SYGGNRGG 135
+G E++GR IRV+ R + +GGG G SYGG R G
Sbjct: 149 FNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDG 191
>sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 273
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 60/82 (73%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
+++VG L+WG D +L+ FS G + +AKV+ +R+SG+SRGFGFVTY S E ++A +
Sbjct: 189 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIES 248
Query: 95 MDGQELNGRNIRVSFANDRPPR 116
+DG +LNGR IRVS A RPPR
Sbjct: 249 LDGVDLNGRAIRVSPAEARPPR 270
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
K+FVG L + D ++L E F G++ +VI ++ +G+SRGFGFVT S E +A
Sbjct: 88 KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147
Query: 95 MDGQELNGRNIRVSFANDRPP 115
+G EL+GR +RV N PP
Sbjct: 148 FNGYELDGRALRV---NSGPP 165
>sp|P49313|ROC1_NICPL 30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 279
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 60/82 (73%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
+++VG L+WG D +L+ FS G + +AKV+ +R+SG+SRGFGFVTY S E ++A +
Sbjct: 195 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIES 254
Query: 95 MDGQELNGRNIRVSFANDRPPR 116
+DG +LNGR IRVS A RPPR
Sbjct: 255 LDGVDLNGRAIRVSPAEARPPR 276
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
K+FVG L + D ++L E F G++ +VI ++ +G+SRGFGFVT S E +A
Sbjct: 88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147
Query: 95 MDGQELNGRNIRVSFANDRPP 115
+G EL+GR +RV N PP
Sbjct: 148 FNGYELDGRALRV---NSGPP 165
>sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1
SV=1
Length = 233
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 66/104 (63%)
Query: 14 NGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGK 73
N AP+ S A R + +++VG L W D S L++ FS G + A+V+++RE+G+
Sbjct: 129 NKAAPRGSPERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGR 188
Query: 74 SRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRPPRS 117
SRGFGFVT S + A +A+DGQ L+GR +RV+ A +RP R+
Sbjct: 189 SRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEERPRRA 232
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 33 QTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQ 92
+ KLFVG L + D L F G + A+VI RE+ +SRGFGFVT + E A A
Sbjct: 54 EAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAV 113
Query: 93 SAMDGQELNGRNIRVSFA-----NDRPPRSD 118
++G +++GR + V+ A +R PR D
Sbjct: 114 ELLNGYDMDGRQLTVNKAAPRGSPERAPRGD 144
>sp|Q99070|GRP2_SORBI Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2
SV=1
Length = 168
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 61/76 (80%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
+ FVGGL+W T++ +L++AF+NFG + ++KVIT+RE+G+SRGFGFVT+ S +S A
Sbjct: 9 RCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIEN 68
Query: 95 MDGQELNGRNIRVSFA 110
M+G+EL+GRNI V+ A
Sbjct: 69 MNGKELDGRNITVNQA 84
>sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 276
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 65/109 (59%)
Query: 8 GMLVRQNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVIT 67
G L+ N AP+ S Q +++VG + W DD+ L++ FS G + A+V+
Sbjct: 165 GRLLTVNKAAPRGSRPERAPRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVF 224
Query: 68 ERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRPPR 116
+RESG+SRGFGFVT S S A + +DGQ L+GR IRV+ A +RP R
Sbjct: 225 DRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEERPRR 273
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 43/79 (54%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
KLFVG L + D L + F G + A+VI RE+ +SRGFGFVT + E A A
Sbjct: 98 KLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVEL 157
Query: 95 MDGQELNGRNIRVSFANDR 113
+LNGR + V+ A R
Sbjct: 158 YSQYDLNGRLLTVNKAAPR 176
>sp|Q9FZ84|RBG6_ARATH Glycine-rich RNA-binding protein 6, mitochondrial OS=Arabidopsis
thaliana GN=RBG6 PE=2 SV=1
Length = 155
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/83 (56%), Positives = 60/83 (72%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
+S + +K+FVGGLS TD LKEAF +FG I +A V+ +RESG SRGFGFVTYDS E A
Sbjct: 31 LSLTPSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVA 90
Query: 89 SSAQSAMDGQELNGRNIRVSFAN 111
++A AM +EL+GR I V A+
Sbjct: 91 NNAMQAMQNKELDGRIIGVHPAD 113
>sp|O89086|RBM3_MOUSE Putative RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1
Length = 153
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 61/82 (74%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
MS + KLFVGGL++ TD+ +L++ FS+FG I+E V+ +RE+ +SRGFGF+T+ + E A
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 89 SSAQSAMDGQELNGRNIRVSFA 110
S A AM+G+ L+GR IRV A
Sbjct: 61 SDAMRAMNGESLDGRQIRVDHA 82
>sp|P98179|RBM3_HUMAN Putative RNA-binding protein 3 OS=Homo sapiens GN=RBM3 PE=1 SV=1
Length = 157
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 61/82 (74%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
MS + KLFVGGL++ TD+ +L++ FS+FG I+E V+ +RE+ +SRGFGF+T+ + E A
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 89 SSAQSAMDGQELNGRNIRVSFA 110
S A AM+G+ L+GR IRV A
Sbjct: 61 SVAMRAMNGESLDGRQIRVDHA 82
>sp|Q43349|ROC2_ARATH 29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP29 PE=1 SV=2
Length = 342
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 60/82 (73%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
+L+VG LSWG DD +L+ F+ G + EA+VI +R+SG+S+GFGFVT S++ A ++
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 95 MDGQELNGRNIRVSFANDRPPR 116
++G +L+GR IRVS A RPPR
Sbjct: 318 LNGADLDGRQIRVSEAEARPPR 339
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
KLFVG LS+ D + L + F + G++ +VI ++ +G+SRGFGFVT + +A
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 95 MDGQELNGRNIRVSFANDRPPRSDGGYGGG 124
+G E GR +RV+ A PP+ + + G
Sbjct: 160 FNGYEFEGRPLRVN-AGPPPPKREESFSRG 188
>sp|Q925G0|RBM3_RAT Putative RNA-binding protein 3 OS=Rattus norvegicus GN=Rbm3 PE=1
SV=2
Length = 155
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 60/82 (73%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
MS + KLFVGGL++ TD+ +L++ FS+FG I+E V+ +RE+ +SRGFGF+T+ + E A
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 89 SSAQSAMDGQELNGRNIRVSFA 110
S AM+G+ L+GR IRV A
Sbjct: 61 SDVMRAMNGESLDGRQIRVDHA 82
>sp|Q03251|RBG8_ARATH Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=RBG8
PE=1 SV=1
Length = 169
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 59/82 (71%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
MS+ + + FVGGL+W T+D L+ FS FGD+ ++K+I +RESG+SRGFGFVT+ ++
Sbjct: 1 MSEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60
Query: 89 SSAQSAMDGQELNGRNIRVSFA 110
A M+G+EL+GR I V+ A
Sbjct: 61 RDAIEEMNGKELDGRVITVNEA 82
>sp|P10979|GRPA_MAIZE Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea
mays GN=RAB15 PE=1 SV=1
Length = 157
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 33 QTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQ 92
+ + FVGGL+W T + SL+ AF+++G+I ++KVIT+RE+G+SRGFGFVT+ S S A
Sbjct: 7 EYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAI 66
Query: 93 SAMDGQELNGRNIRVSFA 110
M+G+EL+GRNI V+ A
Sbjct: 67 ENMNGKELDGRNITVNQA 84
>sp|Q05966|GRP10_BRANA Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2
SV=1
Length = 169
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 59/83 (71%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
MS+ + + FVGGL+W T D+ L+ FS FG++ ++K+I +RE+G+SRGFGFVT+ +S
Sbjct: 1 MSEVEYRCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSM 60
Query: 89 SSAQSAMDGQELNGRNIRVSFAN 111
A M+G+EL+GR I V+ A
Sbjct: 61 KDAIDEMNGKELDGRTITVNEAQ 83
>sp|P49311|GRP2_SINAL Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1
Length = 169
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 59/79 (74%)
Query: 33 QTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQ 92
+ + FVGGL+W TD+ SL+ AFS FG++ ++K+I +RE+G+SRGFGFVT+ +S A
Sbjct: 7 EYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAI 66
Query: 93 SAMDGQELNGRNIRVSFAN 111
M+GQ+L+GR+I V+ A
Sbjct: 67 EGMNGQDLDGRSITVNEAQ 85
>sp|Q03250|RBG7_ARATH Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=RBG7
PE=1 SV=1
Length = 176
Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 59/79 (74%)
Query: 33 QTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQ 92
+ + FVGGL+W TDD +L+ AF+ +GD+ ++K+I +RE+G+SRGFGFVT+ ++ A
Sbjct: 7 EYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAI 66
Query: 93 SAMDGQELNGRNIRVSFAN 111
M+GQ+L+GR+I V+ A
Sbjct: 67 EGMNGQDLDGRSITVNEAQ 85
>sp|P19683|ROC4_NICSY 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 315
Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 55/79 (69%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
+++VG + WG DD+ L++ FS G + A+V+ +RE+G+SRGFGFVT S S A +
Sbjct: 231 RIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIAN 290
Query: 95 MDGQELNGRNIRVSFANDR 113
+DGQ L+GR IRV+ A DR
Sbjct: 291 LDGQSLDGRTIRVNVAEDR 309
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 6/89 (6%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
KLFVG L + D L F G + A+VI R++ +SRGFGFVT + E A A
Sbjct: 137 KLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEM 196
Query: 95 MDGQELNGRNIRVSFA------NDRPPRS 117
+ ++NGR + V+ A +RPPR+
Sbjct: 197 YNRYDVNGRLLTVNKAARRGERPERPPRT 225
>sp|P49310|GRP1_SINAL Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1
Length = 166
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 59/79 (74%)
Query: 33 QTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQ 92
+ + FVGGL+W TDD +L+ AFS +G++ ++K+I +RE+G+SRGFGFVT+ +S A
Sbjct: 7 EYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAI 66
Query: 93 SAMDGQELNGRNIRVSFAN 111
M+GQ+L+GR+I V+ A
Sbjct: 67 EGMNGQDLDGRSITVNEAQ 85
>sp|Q5RF83|CIRBP_PONAB Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2
SV=1
Length = 172
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 65/97 (67%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
M+ + KLFVGGLS+ T++ SL++ FS +G I+E V+ +RE+ +SRGFGFVT+++ + A
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 89 SSAQSAMDGQELNGRNIRVSFANDRPPRSDGGYGGGN 125
A AM+G+ ++GR IRV A GY GG+
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGS 97
>sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1
SV=1
Length = 172
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 65/97 (67%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
M+ + KLFVGGLS+ T++ SL++ FS +G I+E V+ +RE+ +SRGFGFVT+++ + A
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 89 SSAQSAMDGQELNGRNIRVSFANDRPPRSDGGYGGGN 125
A AM+G+ ++GR IRV A GY GG+
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGS 97
>sp|P60825|CIRBP_RAT Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp
PE=2 SV=1
Length = 172
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 65/97 (67%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
M+ + KLFVGGLS+ T++ +L++ FS +G I+E V+ +RE+ +SRGFGFVT+++ + A
Sbjct: 1 MASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 89 SSAQSAMDGQELNGRNIRVSFANDRPPRSDGGYGGGN 125
A AM+G+ ++GR IRV A GY GG+
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGS 97
>sp|P60824|CIRBP_MOUSE Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1
SV=1
Length = 172
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 65/97 (67%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
M+ + KLFVGGLS+ T++ +L++ FS +G I+E V+ +RE+ +SRGFGFVT+++ + A
Sbjct: 1 MASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 89 SSAQSAMDGQELNGRNIRVSFANDRPPRSDGGYGGGN 125
A AM+G+ ++GR IRV A GY GG+
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGS 97
>sp|P60826|CIRBP_CRIGR Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP
PE=2 SV=1
Length = 172
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 65/97 (67%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
M+ + KLFVGGLS+ T++ +L++ FS +G I+E V+ +RE+ +SRGFGFVT+++ + A
Sbjct: 1 MASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 89 SSAQSAMDGQELNGRNIRVSFANDRPPRSDGGYGGGN 125
A AM+G+ ++GR IRV A GY GG+
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGS 97
>sp|Q9PTX2|CIRBP_LITCT Cold-inducible RNA-binding protein OS=Lithobates catesbeiana
GN=cirbp PE=2 SV=1
Length = 164
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 57/82 (69%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
MS + KLFVGGLS+ TD+ L+ FS +G I E V+ +RE+ +SRGFGFVT+++ E A
Sbjct: 1 MSCDEGKLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDA 60
Query: 89 SSAQSAMDGQELNGRNIRVSFA 110
A + M+G+ ++GR IRV A
Sbjct: 61 KDAMAGMNGKTVDGRQIRVDQA 82
>sp|Q28IQ9|CIRBP_XENTR Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp
PE=2 SV=1
Length = 166
Score = 82.8 bits (203), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 58/82 (70%)
Query: 29 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESA 88
MS + KLFVGGL++ T + SL++ FS +G + E V+ +RES +SRGFGFVT+++ E A
Sbjct: 1 MSCDEGKLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDA 60
Query: 89 SSAQSAMDGQELNGRNIRVSFA 110
A AM+G+ ++GR IRV A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQA 82
>sp|Q9SIX3|RBG1_ARATH Probable glycine-rich RNA-binding protein 1 OS=Arabidopsis thaliana
GN=RBG1 PE=2 SV=2
Length = 149
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 57/76 (75%)
Query: 30 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESAS 89
+ ++ + FVGGL+W TD+ S++ F+ FG++ ++K+I +RE+G+S+GF FVT+ +S
Sbjct: 4 ADNEYRCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMR 63
Query: 90 SAQSAMDGQELNGRNI 105
+A M+GQEL+GRNI
Sbjct: 64 TAIDRMNGQELDGRNI 79
>sp|Q9DED4|CIRBB_XENLA Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-b
PE=1 SV=1
Length = 166
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 57/76 (75%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
KLF+GGL++ T++ SL++ FS +G I+E V+ +RE+ +SRGFGFVT+++ + A A A
Sbjct: 6 KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMA 65
Query: 95 MDGQELNGRNIRVSFA 110
M+G+ ++GR IRV A
Sbjct: 66 MNGKAVDGRQIRVDQA 81
>sp|O93235|CIRBA_XENLA Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-a
PE=1 SV=2
Length = 166
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 57/76 (75%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
KLF+GGL++ T++ L++AF+ +G I+E V+ +RE+ +SRGFGFVT+++ + A A A
Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65
Query: 95 MDGQELNGRNIRVSFA 110
M+G+ ++GR IRV A
Sbjct: 66 MNGKSVDGRQIRVDQA 81
>sp|Q9I8B3|RB24B_XENLA RNA-binding protein 24-B OS=Xenopus laevis GN=rbm24-b PE=2 SV=1
Length = 224
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 49/72 (68%), Gaps = 4/72 (5%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSA-- 91
TK+FVGGL + T DSSL++ F FGDI EA VIT+R++GKSRG+GFVT +A A
Sbjct: 11 TKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 70
Query: 92 --QSAMDGQELN 101
+DG++ N
Sbjct: 71 DPNPIIDGRKAN 82
>sp|Q6GQD3|RB24A_XENLA RNA-binding protein 24-A OS=Xenopus laevis GN=rbm24-a PE=2 SV=1
Length = 225
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 49/72 (68%), Gaps = 4/72 (5%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSA-- 91
TK+FVGGL + T DSSL++ F FGDI EA VIT+R++GKSRG+GFVT +A A
Sbjct: 11 TKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 70
Query: 92 --QSAMDGQELN 101
+DG++ N
Sbjct: 71 DPNPIIDGRKAN 82
>sp|Q5ZMA3|RBM24_CHICK RNA-binding protein 24 OS=Gallus gallus GN=RBM24 PE=2 SV=2
Length = 225
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 49/72 (68%), Gaps = 4/72 (5%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSA-- 91
TK+FVGGL + T DSSL++ F FGDI EA VIT+R++GKSRG+GFVT +A A
Sbjct: 11 TKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 70
Query: 92 --QSAMDGQELN 101
+DG++ N
Sbjct: 71 DPNPIIDGRKAN 82
>sp|Q6P8A7|RBM24_XENTR RNA-binding protein 24 OS=Xenopus tropicalis GN=rbm24 PE=2 SV=1
Length = 226
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 49/72 (68%), Gaps = 4/72 (5%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSA-- 91
TK+FVGGL + T DSSL++ F FGDI EA VIT+R++GKSRG+GFVT +A A
Sbjct: 11 TKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 70
Query: 92 --QSAMDGQELN 101
+DG++ N
Sbjct: 71 DPNPIIDGRKAN 82
>sp|Q5ZJX4|RBM38_CHICK RNA-binding protein 38 OS=Gallus gallus GN=RBM38 PE=2 SV=1
Length = 215
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 49/72 (68%), Gaps = 4/72 (5%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSA-- 91
TK+FVGGL + T DSSL++ F FGDI EA VIT+R++GKSRG+GFVT +A A
Sbjct: 11 TKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 70
Query: 92 --QSAMDGQELN 101
+DG++ N
Sbjct: 71 DPNPIIDGRKAN 82
>sp|P19684|ROC5_NICSY 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 324
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 53/86 (61%)
Query: 32 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSA 91
S KL+V LSW L++AF++ AKVI +R SG+SRGFGF+T+ S E+ +SA
Sbjct: 215 SPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSA 274
Query: 92 QSAMDGQELNGRNIRVSFANDRPPRS 117
M+ EL GR +R++ A + P S
Sbjct: 275 LDTMNEVELEGRPLRLNVAGQKAPVS 300
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
+L+VG L + S L E F+ G + +++ +R + +SRGF FVT S E A A
Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 174
Query: 95 MDGQELNGRNIRVSF 109
DG ++ GR ++V+F
Sbjct: 175 FDGSQVGGRTVKVNF 189
>sp|Q9H0Z9|RBM38_HUMAN RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE=1 SV=2
Length = 239
Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 49/72 (68%), Gaps = 4/72 (5%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSA-- 91
TK+FVGGL + T D+SL++ F FGDI EA VIT+R++GKSRG+GFVT +A A
Sbjct: 34 TKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 93
Query: 92 --QSAMDGQELN 101
+DG++ N
Sbjct: 94 DPNPIIDGRKAN 105
>sp|Q29RT0|RBMX_BOVIN RNA-binding motif protein, X chromosome OS=Bos taurus GN=RBMX PE=2
SV=1
Length = 396
Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 53/77 (68%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
KLF+GGL+ TD+ SL+ F +G I+E ++ +RE+ KSRGF F+T++S A +A
Sbjct: 9 KLFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPADAKAAVRD 68
Query: 95 MDGQELNGRNIRVSFAN 111
M+G+ L+G+ I+V+ A
Sbjct: 69 MNGKSLDGKAIKVAQAT 85
>sp|Q6DIV4|RBM38_XENTR RNA-binding protein 38 OS=Xenopus tropicalis GN=rbm38 PE=2 SV=1
Length = 219
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 55/78 (70%), Gaps = 3/78 (3%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQS 93
TK+FVGGL + T D+SL++ F FGDI EA VIT+R++GKSRG+GFVT ++ A++ ++
Sbjct: 11 TKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTGKSRGYGFVT--MSDRAAAERA 68
Query: 94 AMDGQE-LNGRNIRVSFA 110
D ++GR V+ A
Sbjct: 69 CKDPNPIIDGRKANVNLA 86
>sp|D3Z4I3|RBM24_MOUSE RNA-binding protein 24 OS=Mus musculus GN=Rbm24 PE=3 SV=1
Length = 236
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 49/72 (68%), Gaps = 4/72 (5%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSA-- 91
TK+FVGGL + T D+SL++ F FGDI EA VIT+R++GKSRG+GFVT +A A
Sbjct: 11 TKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 70
Query: 92 --QSAMDGQELN 101
+DG++ N
Sbjct: 71 DPNPIIDGRKAN 82
>sp|Q62176|RBM38_MOUSE RNA-binding protein 38 OS=Mus musculus GN=Rbm38 PE=1 SV=2
Length = 237
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/48 (64%), Positives = 40/48 (83%)
Query: 34 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVT 81
TK+FVGGL + T D+SL++ F FGDI EA VIT+R++GKSRG+GFVT
Sbjct: 32 TKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVT 79
>sp|O75526|RMXL2_HUMAN RNA-binding motif protein, X-linked-like-2 OS=Homo sapiens
GN=RBMXL2 PE=1 SV=3
Length = 392
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 52/77 (67%)
Query: 35 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSA 94
KLF+GGL+ TD+ +L+ F +G I E ++ +RE+ KSRGF FVT++S A +A
Sbjct: 9 KLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAARD 68
Query: 95 MDGQELNGRNIRVSFAN 111
M+G+ L+G+ I+V+ A
Sbjct: 69 MNGKSLDGKAIKVAQAT 85
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,834,410
Number of Sequences: 539616
Number of extensions: 2492387
Number of successful extensions: 16658
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 342
Number of HSP's that attempted gapping in prelim test: 10004
Number of HSP's gapped (non-prelim): 5290
length of query: 147
length of database: 191,569,459
effective HSP length: 106
effective length of query: 41
effective length of database: 134,370,163
effective search space: 5509176683
effective search space used: 5509176683
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)