Query 032112
Match_columns 147
No_of_seqs 190 out of 794
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 15:43:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032112.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032112hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hc9_A Trans-acting T-cell-spe 99.9 4.5E-23 1.5E-27 153.3 2.3 97 31-128 3-114 (115)
2 3dfx_A Trans-acting T-cell-spe 99.8 1.9E-22 6.5E-27 136.5 2.4 60 29-128 3-62 (63)
3 4gat_A Nitrogen regulatory pro 99.8 2.6E-21 9E-26 131.9 0.8 55 30-85 6-61 (66)
4 2kae_A GATA-type transcription 99.8 5.1E-19 1.7E-23 122.2 5.1 42 28-69 3-44 (71)
5 1gnf_A Transcription factor GA 99.7 4.2E-18 1.4E-22 108.8 4.7 41 32-73 3-43 (46)
6 2vut_I AREA, nitrogen regulato 99.7 5.2E-18 1.8E-22 106.9 3.3 38 34-72 2-39 (43)
7 4hc9_A Trans-acting T-cell-spe 99.6 2.8E-16 9.5E-21 116.7 5.7 59 28-87 54-113 (115)
8 2vut_I AREA, nitrogen regulato 87.1 0.098 3.4E-06 32.2 -0.4 17 99-115 27-43 (43)
9 2owa_A Arfgap-like finger doma 78.3 1 3.4E-05 33.9 2.0 37 32-70 35-71 (138)
10 3dwd_A ADP-ribosylation factor 78.2 1.4 4.9E-05 33.5 2.9 38 31-70 36-73 (147)
11 2iqj_A Stromal membrane-associ 77.9 1.1 3.6E-05 33.4 2.1 36 32-69 26-61 (134)
12 3cw2_K Translation initiation 77.7 0.99 3.4E-05 33.9 1.9 30 34-64 104-133 (139)
13 2crr_A Stromal membrane-associ 76.7 1.7 5.8E-05 32.6 2.9 36 32-69 28-63 (141)
14 2crw_A ARF GAP 3, ADP-ribosyla 76.4 2 6.7E-05 32.7 3.2 38 31-70 27-64 (149)
15 2d74_B Translation initiation 75.6 1.1 3.6E-05 34.2 1.5 30 34-64 105-134 (148)
16 1dl6_A Transcription factor II 75.3 1.6 5.3E-05 28.0 2.1 33 32-67 10-42 (58)
17 2p57_A GTPase-activating prote 74.2 1.2 4.2E-05 33.8 1.5 37 32-70 36-72 (144)
18 1k81_A EIF-2-beta, probable tr 73.9 0.32 1.1E-05 28.6 -1.4 28 35-63 2-29 (36)
19 2b0o_E UPLC1; arfgap, structur 71.5 2.4 8.3E-05 33.6 2.8 36 32-69 41-76 (301)
20 1nee_A EIF-2-beta, probable tr 70.7 1 3.6E-05 33.8 0.4 28 35-63 104-131 (138)
21 3sub_A ADP-ribosylation factor 65.9 3.2 0.00011 32.1 2.3 37 32-70 21-57 (163)
22 2olm_A Nucleoporin-like protei 65.6 2.5 8.5E-05 31.6 1.6 36 32-69 24-59 (140)
23 3k7a_M Transcription initiatio 65.5 2.3 8E-05 35.3 1.6 33 33-66 21-53 (345)
24 3bvo_A CO-chaperone protein HS 58.3 3.9 0.00013 32.0 1.6 27 32-63 9-35 (207)
25 3jue_A Arfgap with coiled-coil 55.8 7.3 0.00025 32.3 2.9 37 31-69 43-79 (368)
26 3o47_A ADP-ribosylation factor 54.2 6.6 0.00023 31.8 2.4 38 31-70 35-72 (329)
27 2g2k_A EIF-5, eukaryotic trans 53.0 2 6.9E-05 33.4 -0.9 30 35-65 98-129 (170)
28 3h0g_L DNA-directed RNA polyme 51.2 3.4 0.00011 27.3 0.1 37 29-70 17-53 (63)
29 3lju_X ARF-GAP with dual PH do 48.4 7.8 0.00027 32.6 2.0 35 32-68 33-67 (386)
30 1pft_A TFIIB, PFTFIIBN; N-term 48.4 3.5 0.00012 24.9 -0.1 30 34-66 6-35 (50)
31 3cng_A Nudix hydrolase; struct 47.5 5.8 0.0002 29.2 1.0 32 33-64 3-34 (189)
32 1qyp_A RNA polymerase II; tran 47.5 1.6 5.3E-05 27.4 -1.9 34 33-66 15-54 (57)
33 2e9h_A EIF-5, eukaryotic trans 47.3 3.1 0.0001 32.0 -0.6 30 34-64 104-135 (157)
34 2l5g_B Putative uncharacterize 44.2 9 0.00031 23.5 1.3 37 99-135 4-40 (42)
35 1dcq_A PYK2-associated protein 42.7 16 0.00056 28.3 2.9 37 32-70 16-52 (278)
36 4bbr_M Transcription initiatio 42.2 4.3 0.00015 34.0 -0.6 31 33-64 21-51 (345)
37 2zjr_Z 50S ribosomal protein L 41.8 4 0.00014 26.5 -0.6 24 32-64 29-52 (60)
38 3k1f_M Transcription initiatio 41.6 7.4 0.00025 30.9 0.8 34 32-66 20-53 (197)
39 2nll_B Protein (thyroid hormon 39.4 95 0.0032 21.6 6.4 31 34-69 2-32 (103)
40 3v2d_5 50S ribosomal protein L 38.5 4.3 0.00015 26.3 -0.9 23 33-64 30-52 (60)
41 1pqv_S STP-alpha, transcriptio 29.9 9.1 0.00031 31.6 -0.5 34 33-66 268-307 (309)
42 3po3_S Transcription elongatio 29.8 7.7 0.00026 29.8 -0.9 35 32-66 136-176 (178)
43 2yrk_A Zinc finger homeobox pr 28.9 9.5 0.00032 24.7 -0.5 19 49-67 7-25 (55)
44 1twf_L ABC10-alpha, DNA-direct 27.7 19 0.00063 23.9 0.8 30 30-64 25-54 (70)
45 2yrc_A Protein transport prote 27.6 23 0.0008 22.6 1.3 37 28-64 4-42 (59)
46 2ysl_A Tripartite motif-contai 27.2 1.1E+02 0.0036 18.5 5.0 37 29-67 16-52 (73)
47 3dzy_D Peroxisome proliferator 26.4 46 0.0016 28.1 3.3 33 32-69 49-81 (419)
48 1tfi_A Transcriptional elongat 26.0 7.8 0.00027 24.0 -1.2 35 32-66 8-48 (50)
49 2l1q_A Liver-expressed antimic 25.5 19 0.00063 21.9 0.4 9 44-52 2-10 (40)
50 3lvq_E ARF-GAP with SH3 domain 25.3 40 0.0014 28.2 2.7 36 32-69 22-57 (497)
51 3lpe_B DNA-directed RNA polyme 25.0 17 0.00059 23.4 0.3 15 35-49 15-29 (59)
52 1nui_A DNA primase/helicase; z 24.9 21 0.00071 27.8 0.8 28 33-63 14-41 (255)
53 2ds5_A CLPX, ATP-dependent CLP 24.3 51 0.0017 20.5 2.4 30 34-65 12-43 (51)
54 1ovx_A ATP-dependent CLP prote 23.1 46 0.0016 22.0 2.1 31 34-66 19-51 (67)
55 2kdx_A HYPA, hydrogenase/ureas 21.7 22 0.00075 25.0 0.3 28 32-65 72-100 (119)
56 2cr8_A MDM4 protein; ZF-ranbp 21.0 45 0.0015 21.3 1.6 23 26-48 4-26 (53)
57 3mhs_E SAGA-associated factor 21.0 17 0.00058 25.9 -0.4 9 56-64 76-84 (96)
58 2han_B Ecdysone receptor; tran 20.8 57 0.002 23.4 2.4 36 29-69 4-39 (119)
No 1
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.86 E-value=4.5e-23 Score=153.35 Aligned_cols=97 Identities=25% Similarity=0.545 Sum_probs=67.9
Q ss_pred CCCCccccCCCCCCCccccCCCCCcccchhHHHHHHhhcccccccCchhhhh-------cccCCCCCCCC--CCCC----
Q 032112 31 SIKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRAILGITKEEKKS-------KRGNSNSSSNS--SSNK---- 97 (147)
Q Consensus 31 ~~~~~C~nCgtt~Tp~WR~gp~G~~~LCNaCGl~~~k~~~~~~~~~~~~~k~-------k~~~~~~~~~~--~~~~---- 97 (147)
...++|+||+|++||+||+|++| .+|||||||||+.+++.++.+++..+.. .+.++....++ +...
T Consensus 3 ~~~~~C~~Cg~~~Tp~WRr~~~g-~~lCnaCgl~~Kl~G~nRP~~KpKKR~~~~~~~~~~C~~C~t~~tp~WRr~~~g~~ 81 (115)
T 4hc9_A 3 HMGRECVNCGATSTPLWRRDGTG-HYLCNACGLYHKMNGQNRPLIKPKRRLSAARRAGTSCANCQTTTTTLWRRNANGDP 81 (115)
T ss_dssp ---CCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHHSSCCCCSSCCCCCCCCCCTTCCCTTTCCSCCSSCEECTTSCE
T ss_pred CCCCCCCCCCCccCCcceECCCC-CCcCcchhhhhhhcccccccccccccccccccccccCCCcCCCCcceeEECCCCCC
Confidence 45789999999999999999999 5999999999999987775443322111 12233332221 2121
Q ss_pred --CCCcchhhhhccCcchhhhhhhHHHHhhhcC
Q 032112 98 --LGDSLKQRLYALGREVLMQRSSVEKQRKTLG 128 (147)
Q Consensus 98 --~~~~l~~kl~~v~r~~~mkk~~i~~rkrkl~ 128 (147)
..||||+++|++.||+.|+++.|++|+||++
T Consensus 82 lCNaCgl~~~~~~~~rp~~~~~~~i~~r~r~~s 114 (115)
T 4hc9_A 82 VCNACGLYYKLHNINRPLTMKKEGIQTRNRKMS 114 (115)
T ss_dssp ECHHHHHHHHHHSSCCCGGGCCSSCCCCC----
T ss_pred cchHHHHHHHHhCCCCCccccccchhhcccccc
Confidence 2269999999999999999999999999986
No 2
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=99.85 E-value=1.9e-22 Score=136.50 Aligned_cols=60 Identities=28% Similarity=0.722 Sum_probs=47.3
Q ss_pred CCCCCCccccCCCCCCCccccCCCCCcccchhHHHHHHhhcccccccCchhhhhcccCCCCCCCCCCCCCCCcchhhhhc
Q 032112 29 ENSIKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRAILGITKEEKKSKRGNSNSSSNSSSNKLGDSLKQRLYA 108 (147)
Q Consensus 29 ~~~~~~~C~nCgtt~Tp~WR~gp~G~~~LCNaCGl~~~k~~~~~~~~~~~~~k~k~~~~~~~~~~~~~~~~~~l~~kl~~ 108 (147)
.......|+||+|++||+||+||+|+ +|||||||||+++ +
T Consensus 3 ~~~~~~~C~~C~tt~Tp~WR~gp~G~-~LCNACGl~~~~~---------------------------------------~ 42 (63)
T 3dfx_A 3 ARRAGTSCANCQTTTTTLWRRNANGD-PVCNACGLYYKLH---------------------------------------N 42 (63)
T ss_dssp CCCTTCCCTTTCCSCCSSCCCCTTSC-CCCHHHHHHHHHH---------------------------------------S
T ss_pred CCCCCCcCCCcCCCCCCccCCCCCCC-chhhHHHHHHHHc---------------------------------------C
Confidence 34557789999999999999999997 9999999999955 4
Q ss_pred cCcchhhhhhhHHHHhhhcC
Q 032112 109 LGREVLMQRSSVEKQRKTLG 128 (147)
Q Consensus 109 v~r~~~mkk~~i~~rkrkl~ 128 (147)
+.||+.|++++|++|+||.+
T Consensus 43 ~~RP~~~~~~~i~~R~Rk~~ 62 (63)
T 3dfx_A 43 INRPLTMKKEGIQTRNRKMS 62 (63)
T ss_dssp SCCCGGGCCSSCCCCC----
T ss_pred CCCCcCcCCCccccccCCCC
Confidence 56777777777777777653
No 3
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=99.81 E-value=2.6e-21 Score=131.89 Aligned_cols=55 Identities=35% Similarity=0.689 Sum_probs=42.1
Q ss_pred CCCCCccccCCCCCCCccccCCCCCcccchhHHHHHHhhcccc-cccCchhhhhccc
Q 032112 30 NSIKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRAI-LGITKEEKKSKRG 85 (147)
Q Consensus 30 ~~~~~~C~nCgtt~Tp~WR~gp~G~~~LCNaCGl~~~k~~~~~-~~~~~~~~k~k~~ 85 (147)
++..+.|+||+|++||+||+||+|+ +|||||||||+++++.+ +.+++..+++++|
T Consensus 6 ~~~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl~~~~~~~~RP~~~k~~~ik~R~R 61 (66)
T 4gat_A 6 QNGPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLSLKTDVIKKRNR 61 (66)
T ss_dssp SSSSCCCTTTCCCCCSSCEEETTTE-EECHHHHHHHHHHCSCCCGGGCCSCCCCCCC
T ss_pred CCCCCCCCCCCCCCCCcCCcCCCCC-CccHHHHHHHHHcCCCCchhhcccccccccc
Confidence 4567899999999999999999997 99999999999665433 2344444444433
No 4
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=99.76 E-value=5.1e-19 Score=122.15 Aligned_cols=42 Identities=33% Similarity=0.529 Sum_probs=31.4
Q ss_pred CCCCCCCccccCCCCCCCccccCCCCCcccchhHHHHHHhhc
Q 032112 28 DENSIKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKR 69 (147)
Q Consensus 28 ~~~~~~~~C~nCgtt~Tp~WR~gp~G~~~LCNaCGl~~~k~~ 69 (147)
.+......|+||+|++||+||+|+.+..+|||||||||++++
T Consensus 3 ~~~~~~~~C~nC~tt~Tp~WRrg~~~~g~LCNACGl~~~~~~ 44 (71)
T 2kae_A 3 HMNKKSFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQRKYN 44 (71)
T ss_dssp -----CCCCSSSCCSCCSSCCCCSSSSCCCSSHHHHHHHHHH
T ss_pred CCCCCCCcCCccCCCCCCccccCCCCCCccchHHHHHHHHhC
Confidence 345667899999999999999954433489999999999553
No 5
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=99.72 E-value=4.2e-18 Score=108.77 Aligned_cols=41 Identities=39% Similarity=0.875 Sum_probs=37.0
Q ss_pred CCCccccCCCCCCCccccCCCCCcccchhHHHHHHhhccccc
Q 032112 32 IKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRAIL 73 (147)
Q Consensus 32 ~~~~C~nCgtt~Tp~WR~gp~G~~~LCNaCGl~~~k~~~~~~ 73 (147)
..+.|+||+|++||+||+||+|+ +|||||||||+++++.++
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP 43 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGH-YLCNACGLYHKMNGQNRP 43 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCC-CBCSHHHHHHHHTCSCCC
T ss_pred CCCCCCCcCCCCCCcCccCCCCC-ccchHHHHHHHHcCCCCC
Confidence 56789999999999999999997 999999999998876553
No 6
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=99.70 E-value=5.2e-18 Score=106.91 Aligned_cols=38 Identities=45% Similarity=0.927 Sum_probs=34.7
Q ss_pred CccccCCCCCCCccccCCCCCcccchhHHHHHHhhcccc
Q 032112 34 KTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRAI 72 (147)
Q Consensus 34 ~~C~nCgtt~Tp~WR~gp~G~~~LCNaCGl~~~k~~~~~ 72 (147)
+.|+||+|++||+||+||+|+ +|||||||||+++++.+
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~R 39 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGVVR 39 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSC-EECHHHHHHHHHHSSCC
T ss_pred CcCCccCCCCCCccccCCCCC-cccHHHHHHHHHhCCCC
Confidence 579999999999999999997 99999999999887644
No 7
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.63 E-value=2.8e-16 Score=116.69 Aligned_cols=59 Identities=31% Similarity=0.625 Sum_probs=48.3
Q ss_pred CCCCCCCccccCCCCCCCccccCCCCCcccchhHHHHHHhhcccc-cccCchhhhhcccCC
Q 032112 28 DENSIKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRAI-LGITKEEKKSKRGNS 87 (147)
Q Consensus 28 ~~~~~~~~C~nCgtt~Tp~WR~gp~G~~~LCNaCGl~~~k~~~~~-~~~~~~~~k~k~~~~ 87 (147)
........|+||+|++||+||+||+| .+|||||||||++++..+ +.|++..+++++++.
T Consensus 54 ~~~~~~~~C~~C~t~~tp~WRr~~~g-~~lCNaCgl~~~~~~~~rp~~~~~~~i~~r~r~~ 113 (115)
T 4hc9_A 54 AARRAGTSCANCQTTTTTLWRRNANG-DPVCNACGLYYKLHNINRPLTMKKEGIQTRNRKM 113 (115)
T ss_dssp CCCCTTCCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHHSSCCCGGGCCSSCCCCC---
T ss_pred ccccccccCCCcCCCCcceeEECCCC-CCcchHHHHHHHHhCCCCCccccccchhhccccc
Confidence 33455789999999999999999999 699999999999988655 678888888877654
No 8
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=87.09 E-value=0.098 Score=32.21 Aligned_cols=17 Identities=18% Similarity=0.139 Sum_probs=15.4
Q ss_pred CCcchhhhhccCcchhh
Q 032112 99 GDSLKQRLYALGREVLM 115 (147)
Q Consensus 99 ~~~l~~kl~~v~r~~~m 115 (147)
.||||+++|++.||+.|
T Consensus 27 aCGl~~k~~~~~RP~~l 43 (43)
T 2vut_I 27 ACGLFLKLHGVVRPLSL 43 (43)
T ss_dssp HHHHHHHHHSSCCCCCC
T ss_pred HHHHHHHHhCCCCCCCC
Confidence 37999999999999976
No 9
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=78.34 E-value=1 Score=33.85 Aligned_cols=37 Identities=27% Similarity=0.564 Sum_probs=31.2
Q ss_pred CCCccccCCCCCCCccccCCCCCcccchhHHHHHHhhcc
Q 032112 32 IKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRR 70 (147)
Q Consensus 32 ~~~~C~nCgtt~Tp~WR~gp~G~~~LCNaCGl~~~k~~~ 70 (147)
.++.|++|++.. |.|-.-..| ..+|-.|.-.+|..+.
T Consensus 35 ~N~~CaDCga~~-P~WaS~n~G-vfiC~~CsgiHR~LG~ 71 (138)
T 2owa_A 35 ENRTCFDCESRN-PTWLSLSFA-VFICLNCSSDHRKMGV 71 (138)
T ss_dssp GGGBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHTTCT
T ss_pred CCCcCCCCcCCC-CCeEEecCC-EEEhHhhhHHHhCCCC
Confidence 568999999875 999999999 5899999888876543
No 10
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=78.20 E-value=1.4 Score=33.52 Aligned_cols=38 Identities=26% Similarity=0.568 Sum_probs=31.8
Q ss_pred CCCCccccCCCCCCCccccCCCCCcccchhHHHHHHhhcc
Q 032112 31 SIKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRR 70 (147)
Q Consensus 31 ~~~~~C~nCgtt~Tp~WR~gp~G~~~LCNaCGl~~~k~~~ 70 (147)
..++.|++|++.. |.|-.-..| ..||-.|.-.+|..+.
T Consensus 36 p~N~~CaDCga~~-P~WaS~nlG-vfiC~~CSgiHR~LG~ 73 (147)
T 3dwd_A 36 DENNVCFECGAFN-PQWVSVTYG-IWICLECSGRHRGLGV 73 (147)
T ss_dssp TTTTBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHHHCT
T ss_pred cCCCccCCCCCCC-CCeEEeccc-EeEhHhhChHHhcCCC
Confidence 4578999999975 999999999 5999999888776554
No 11
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=77.88 E-value=1.1 Score=33.43 Aligned_cols=36 Identities=31% Similarity=0.571 Sum_probs=30.6
Q ss_pred CCCccccCCCCCCCccccCCCCCcccchhHHHHHHhhc
Q 032112 32 IKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKR 69 (147)
Q Consensus 32 ~~~~C~nCgtt~Tp~WR~gp~G~~~LCNaCGl~~~k~~ 69 (147)
.++.|++|++.. |.|-.-..| ..+|-.|.-.++..+
T Consensus 26 ~N~~CaDCg~~~-P~WaS~n~G-vfiC~~CsgiHR~lG 61 (134)
T 2iqj_A 26 DNKFCADCQSKG-PRWASWNIG-VFICIRCAGIHRNLG 61 (134)
T ss_dssp GGGBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHHHC
T ss_pred CCCcCCcCcCCC-CCeEEecCC-EEEhHhhhHHHhcCC
Confidence 468999999875 999999999 589999987777654
No 12
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=77.74 E-value=0.99 Score=33.94 Aligned_cols=30 Identities=27% Similarity=0.525 Sum_probs=21.8
Q ss_pred CccccCCCCCCCccccCCCCCcccchhHHHH
Q 032112 34 KTCADCGTTKTPLWRGGPAGPKSLCNACGIR 64 (147)
Q Consensus 34 ~~C~nCgtt~Tp~WR~gp~G~~~LCNaCGl~ 64 (147)
-.|..|+..+|-+-+.+..- ..-|+|||-.
T Consensus 104 VlC~~C~sPdT~l~k~~r~~-~l~C~ACGa~ 133 (139)
T 3cw2_K 104 VECSTCKSLDTILKKEKKSW-YIVCLACGAQ 133 (139)
T ss_dssp SSCCSSSSSCCCSCSSCSTT-TSSCCC----
T ss_pred eECCCCCCcCcEEEEeCCeE-EEEecCCCCC
Confidence 57999999999999876544 3689999954
No 13
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.69 E-value=1.7 Score=32.56 Aligned_cols=36 Identities=31% Similarity=0.567 Sum_probs=30.2
Q ss_pred CCCccccCCCCCCCccccCCCCCcccchhHHHHHHhhc
Q 032112 32 IKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKR 69 (147)
Q Consensus 32 ~~~~C~nCgtt~Tp~WR~gp~G~~~LCNaCGl~~~k~~ 69 (147)
.++.|++|++. -|.|-.-..| ..+|-.|.-.+|..+
T Consensus 28 ~N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~LG 63 (141)
T 2crr_A 28 DNKYCADCEAK-GPRWASWNIG-VFICIRCAGIHRNLG 63 (141)
T ss_dssp GGSSCSSSCCS-SCCSEETTTT-EECCHHHHHHHHHHC
T ss_pred cCCcCCCCCCC-CCCeEEeccC-eEEhhhhhHhHhcCC
Confidence 46899999987 4999999999 589999987777654
No 14
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.45 E-value=2 Score=32.69 Aligned_cols=38 Identities=32% Similarity=0.624 Sum_probs=31.3
Q ss_pred CCCCccccCCCCCCCccccCCCCCcccchhHHHHHHhhcc
Q 032112 31 SIKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRR 70 (147)
Q Consensus 31 ~~~~~C~nCgtt~Tp~WR~gp~G~~~LCNaCGl~~~k~~~ 70 (147)
..++.|++|++. -|.|-.-..| ..+|-.|.-.+|..+.
T Consensus 27 p~N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~LG~ 64 (149)
T 2crw_A 27 PTNKVCFDCGAK-NPSWASITYG-VFLCIDCSGSHRSLGV 64 (149)
T ss_dssp TTTSBCSSSCCB-SCCCEETTTT-EECCHHHHHHHHHHCT
T ss_pred cCCCcCCCCcCC-CCCcEEeccC-EEEchhcchhhccCCC
Confidence 367899999986 5999999999 5899999877776543
No 15
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=75.63 E-value=1.1 Score=34.20 Aligned_cols=30 Identities=27% Similarity=0.577 Sum_probs=24.0
Q ss_pred CccccCCCCCCCccccCCCCCcccchhHHHH
Q 032112 34 KTCADCGTTKTPLWRGGPAGPKSLCNACGIR 64 (147)
Q Consensus 34 ~~C~nCgtt~Tp~WR~gp~G~~~LCNaCGl~ 64 (147)
-.|..|+..+|-+-+.+..- -.-|+|||-.
T Consensus 105 VlC~~C~sPdT~L~k~~r~~-~l~C~ACGa~ 134 (148)
T 2d74_B 105 VICPVCGSPDTKIIKRDRFH-FLKCEACGAE 134 (148)
T ss_dssp SSCSSSCCTTCCCCBSSSSB-CCCCSSSCCC
T ss_pred EECCCCCCcCcEEEEeCCEE-EEEecCCCCC
Confidence 36999999999999876544 3689999843
No 16
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=75.27 E-value=1.6 Score=27.95 Aligned_cols=33 Identities=24% Similarity=0.458 Sum_probs=23.9
Q ss_pred CCCccccCCCCCCCccccCCCCCcccchhHHHHHHh
Q 032112 32 IKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRK 67 (147)
Q Consensus 32 ~~~~C~nCgtt~Tp~WR~gp~G~~~LCNaCGl~~~k 67 (147)
....|.+|+.+. +-.....|. .+|..||+-+.-
T Consensus 10 ~~~~Cp~C~~~~--lv~D~~~ge-~vC~~CGlVl~e 42 (58)
T 1dl6_A 10 PRVTCPNHPDAI--LVEDYRAGD-MICPECGLVVGD 42 (58)
T ss_dssp SCCSBTTBSSSC--CEECSSSCC-EECTTTCCEECC
T ss_pred ccccCcCCCCCc--eeEeCCCCe-EEeCCCCCEEec
Confidence 345799998754 555666675 899999987653
No 17
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=74.18 E-value=1.2 Score=33.75 Aligned_cols=37 Identities=32% Similarity=0.629 Sum_probs=30.9
Q ss_pred CCCccccCCCCCCCccccCCCCCcccchhHHHHHHhhcc
Q 032112 32 IKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRR 70 (147)
Q Consensus 32 ~~~~C~nCgtt~Tp~WR~gp~G~~~LCNaCGl~~~k~~~ 70 (147)
.++.|++|+... |.|-.-..| ..+|-.|.-.++..+.
T Consensus 36 ~N~~CaDCga~~-P~WaS~n~G-vfiC~~CsgiHR~LG~ 72 (144)
T 2p57_A 36 TNKACFDCGAKN-PSWASITYG-VFLCIDCSGVHRSLGV 72 (144)
T ss_dssp GGGBCTTTCCBS-CCEEEGGGT-EEECHHHHHHHHHHCT
T ss_pred CCCcCCCCcCCC-CCeEEeccC-EEEhhhchHHHcCCCC
Confidence 568999999865 999999999 5899999887776553
No 18
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=73.95 E-value=0.32 Score=28.64 Aligned_cols=28 Identities=32% Similarity=0.758 Sum_probs=21.7
Q ss_pred ccccCCCCCCCccccCCCCCcccchhHHH
Q 032112 35 TCADCGTTKTPLWRGGPAGPKSLCNACGI 63 (147)
Q Consensus 35 ~C~nCgtt~Tp~WR~gp~G~~~LCNaCGl 63 (147)
.|..|+..+|-+=+.+..- ..-|+|||-
T Consensus 2 lC~~C~~peT~l~~~~~~~-~l~C~aCG~ 29 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVH-LLKCMACGA 29 (36)
T ss_dssp CCSSSCSCEEEEEEETTEE-EEEEETTTE
T ss_pred CCcCCCCCCcEEEEeCCcE-EEEhhcCCC
Confidence 4999999999998865333 256999984
No 19
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=71.49 E-value=2.4 Score=33.62 Aligned_cols=36 Identities=28% Similarity=0.615 Sum_probs=29.9
Q ss_pred CCCccccCCCCCCCccccCCCCCcccchhHHHHHHhhc
Q 032112 32 IKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKR 69 (147)
Q Consensus 32 ~~~~C~nCgtt~Tp~WR~gp~G~~~LCNaCGl~~~k~~ 69 (147)
.+..|++|++.. |.|-.-..| ..+|-.|.-..|.-+
T Consensus 41 ~n~~c~dc~~~~-p~w~s~~~g-~~~c~~cs~~hr~lg 76 (301)
T 2b0o_E 41 GNSQCCDCGAAD-PTWLSTNLG-VLTCIQCSGVHRELG 76 (301)
T ss_dssp TTTBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHHHC
T ss_pred CCCcCCCCCCCC-CCeEEeecC-eEEcHHHHHHHHhhC
Confidence 478999999965 999999999 599999976666544
No 20
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=70.69 E-value=1 Score=33.79 Aligned_cols=28 Identities=32% Similarity=0.746 Sum_probs=23.1
Q ss_pred ccccCCCCCCCccccCCCCCcccchhHHH
Q 032112 35 TCADCGTTKTPLWRGGPAGPKSLCNACGI 63 (147)
Q Consensus 35 ~C~nCgtt~Tp~WR~gp~G~~~LCNaCGl 63 (147)
.|..|+..+|-+-+.+..- ..-|+|||-
T Consensus 104 lC~~C~sPdT~l~k~~r~~-~l~C~ACGa 131 (138)
T 1nee_A 104 ICHECNRPDTRIIREGRIS-LLKCEACGA 131 (138)
T ss_dssp HHTCCSSCSSCCEEETTTT-EEECSTTSC
T ss_pred ECCCCCCcCcEEEEcCCeE-EEEccCCCC
Confidence 6999999999999876444 368999984
No 21
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=65.87 E-value=3.2 Score=32.13 Aligned_cols=37 Identities=30% Similarity=0.573 Sum_probs=30.7
Q ss_pred CCCccccCCCCCCCccccCCCCCcccchhHHHHHHhhcc
Q 032112 32 IKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRR 70 (147)
Q Consensus 32 ~~~~C~nCgtt~Tp~WR~gp~G~~~LCNaCGl~~~k~~~ 70 (147)
..+.|++|++. -|.|-.-..| ..||-.|.-.+|..+.
T Consensus 21 ~N~~CaDCga~-~P~WaS~nlG-vflCi~CSGiHR~LG~ 57 (163)
T 3sub_A 21 SNNKCFDCGIS-NPDWVSVNHG-IFLCINCSGVHRSLGV 57 (163)
T ss_dssp GGGBCTTTCCB-SCCEEETTTT-EEECHHHHHHHHHTCT
T ss_pred CCCccccCCCC-CCCeEEecCC-eeEHHhhhHHhcCCCC
Confidence 46789999996 5999999999 5999999877776544
No 22
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=65.59 E-value=2.5 Score=31.61 Aligned_cols=36 Identities=22% Similarity=0.527 Sum_probs=29.7
Q ss_pred CCCccccCCCCCCCccccCCCCCcccchhHHHHHHhhc
Q 032112 32 IKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKR 69 (147)
Q Consensus 32 ~~~~C~nCgtt~Tp~WR~gp~G~~~LCNaCGl~~~k~~ 69 (147)
.+..|++|++. -|.|-.-..| ..+|-.|.-.++..+
T Consensus 24 ~N~~CaDCg~~-~P~WaS~n~G-vfiC~~CsgiHR~LG 59 (140)
T 2olm_A 24 HNRKCFDCDQR-GPTYVNMTVG-SFVCTSCSGSLRGLN 59 (140)
T ss_dssp GGGSCTTTCSS-CCCEEETTTT-EEECHHHHHHHTTSS
T ss_pred CCCcCCCCCCC-CCCceeeccC-EEEchhccchhccCC
Confidence 46789999986 6999999999 589999977777543
No 23
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=65.55 E-value=2.3 Score=35.33 Aligned_cols=33 Identities=21% Similarity=0.493 Sum_probs=22.5
Q ss_pred CCccccCCCCCCCccccCCCCCcccchhHHHHHH
Q 032112 33 KKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSR 66 (147)
Q Consensus 33 ~~~C~nCgtt~Tp~WR~gp~G~~~LCNaCGl~~~ 66 (147)
...|.+|+.+.+.+-.+...|. ++|..||+-..
T Consensus 21 ~~~Cp~Cg~~~~~iv~D~~~G~-~vC~~CG~Vl~ 53 (345)
T 3k7a_M 21 VLTCPECKVYPPKIVERFSEGD-VVCALCGLVLS 53 (345)
T ss_dssp CCCCSTTCCSCCCCCCCSSSCS-CCCSSSCCCCC
T ss_pred CCcCcCCCCCCCceEEECCCCC-EecCCCCeEcc
Confidence 4579999887533434556675 78999987654
No 24
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=58.31 E-value=3.9 Score=32.04 Aligned_cols=27 Identities=22% Similarity=0.529 Sum_probs=17.6
Q ss_pred CCCccccCCCCCCCccccCCCCCcccchhHHH
Q 032112 32 IKKTCADCGTTKTPLWRGGPAGPKSLCNACGI 63 (147)
Q Consensus 32 ~~~~C~nCgtt~Tp~WR~gp~G~~~LCNaCGl 63 (147)
....|.+|+...++ ..+...+|..|+.
T Consensus 9 ~~~~Cw~C~~~~~~-----~~~~~~fC~~c~~ 35 (207)
T 3bvo_A 9 NYPRCWNCGGPWGP-----GREDRFFCPQCRA 35 (207)
T ss_dssp --CBCSSSCCBCCS-----SCSCCCBCTTTCC
T ss_pred CCCCCCCCCCCccc-----ccccccccccccc
Confidence 56789999976432 2334589999974
No 25
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=55.79 E-value=7.3 Score=32.30 Aligned_cols=37 Identities=27% Similarity=0.557 Sum_probs=30.5
Q ss_pred CCCCccccCCCCCCCccccCCCCCcccchhHHHHHHhhc
Q 032112 31 SIKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKR 69 (147)
Q Consensus 31 ~~~~~C~nCgtt~Tp~WR~gp~G~~~LCNaCGl~~~k~~ 69 (147)
..+..|++|++. -|.|-.-..| ..+|-.|.--+|..+
T Consensus 43 ~~n~~c~dc~~~-~p~w~s~~~g-~~~c~~c~~~hr~lg 79 (368)
T 3jue_A 43 DGNAQCCDCREP-APEWASINLG-VTLCIQCSGIHRSLG 79 (368)
T ss_dssp TTTTBCTTTCCB-SCCEEETTTT-EEECHHHHHHHHHHC
T ss_pred CCcCcCCCCCCC-CCCeEEecCC-eEEcHhHHHHHhccC
Confidence 346899999996 5999999999 599999977766654
No 26
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=54.19 E-value=6.6 Score=31.79 Aligned_cols=38 Identities=26% Similarity=0.565 Sum_probs=31.1
Q ss_pred CCCCccccCCCCCCCccccCCCCCcccchhHHHHHHhhcc
Q 032112 31 SIKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRR 70 (147)
Q Consensus 31 ~~~~~C~nCgtt~Tp~WR~gp~G~~~LCNaCGl~~~k~~~ 70 (147)
..++.|++|+.. -|.|-.-..| ..+|-.|.--+|..+.
T Consensus 35 ~~n~~c~dc~~~-~~~~~~~~~~-~~~c~~c~~~hr~~~~ 72 (329)
T 3o47_A 35 DENNVCFECGAF-NPQWVSVTYG-IWICLECSGRHRGLGV 72 (329)
T ss_dssp TTTTBCTTTCCB-SCCEEEGGGT-EEECHHHHHHHHHHCT
T ss_pred CCCCcCCCCCCC-CCCeEEecCC-EEEChhhhhhhcccCC
Confidence 356789999985 5799999999 5999999877776543
No 27
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=52.97 E-value=2 Score=33.39 Aligned_cols=30 Identities=30% Similarity=0.654 Sum_probs=23.0
Q ss_pred ccccCCCCCCCcccc--CCCCCcccchhHHHHH
Q 032112 35 TCADCGTTKTPLWRG--GPAGPKSLCNACGIRS 65 (147)
Q Consensus 35 ~C~nCgtt~Tp~WR~--gp~G~~~LCNaCGl~~ 65 (147)
.|..|+..+|-+-+. +..- ..-|+|||-..
T Consensus 98 lC~~C~sPdT~L~k~~~~r~~-~l~C~ACGa~~ 129 (170)
T 2g2k_A 98 LCPECENPETDLHVNPKKQTI-GNSCKACGYRG 129 (170)
T ss_dssp SCTTTSSSCEEEEEETTTTEE-EEEETTTCCCC
T ss_pred ECCCCCCCccEEEEecCCCEE-EEEccccCCcc
Confidence 699999999999984 3333 36799999543
No 28
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=51.23 E-value=3.4 Score=27.29 Aligned_cols=37 Identities=35% Similarity=0.566 Sum_probs=25.2
Q ss_pred CCCCCCccccCCCCCCCccccCCCCCcccchhHHHHHHhhcc
Q 032112 29 ENSIKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRR 70 (147)
Q Consensus 29 ~~~~~~~C~nCgtt~Tp~WR~gp~G~~~LCNaCGl~~~k~~~ 70 (147)
+....-.|..|++..+.. .+...-|.-||-+.-.+.+
T Consensus 17 ~~~v~Y~C~~Cg~~~~l~-----~~~~iRC~~CG~RILyK~R 53 (63)
T 3h0g_L 17 PATMIYLCADCGARNTIQ-----AKEVIRCRECGHRVMYKMR 53 (63)
T ss_dssp --CCCCBCSSSCCBCCCC-----SSSCCCCSSSCCCCCBCCC
T ss_pred CCCeEEECCCCCCeeecC-----CCCceECCCCCcEEEEEec
Confidence 345678999999988755 2334789999977554443
No 29
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=48.45 E-value=7.8 Score=32.65 Aligned_cols=35 Identities=31% Similarity=0.651 Sum_probs=29.0
Q ss_pred CCCccccCCCCCCCccccCCCCCcccchhHHHHHHhh
Q 032112 32 IKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKK 68 (147)
Q Consensus 32 ~~~~C~nCgtt~Tp~WR~gp~G~~~LCNaCGl~~~k~ 68 (147)
.+..|++|++. -|.|-.-..| ..||-.|.--++..
T Consensus 33 ~N~~C~dC~~~-~p~w~s~~~g-~~~C~~Csg~hr~l 67 (386)
T 3lju_X 33 GNARCADCGAP-DPDWASYTLG-VFICLSCSGIHRNI 67 (386)
T ss_dssp GGSBCTTTCCB-SCCEEETTTT-EEECHHHHHHHHTC
T ss_pred CCCcCccCCCC-CCCeEEeccc-EEEhhhhchHhhCC
Confidence 35689999997 7999999999 59999997666643
No 30
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=48.36 E-value=3.5 Score=24.94 Aligned_cols=30 Identities=27% Similarity=0.638 Sum_probs=19.5
Q ss_pred CccccCCCCCCCccccCCCCCcccchhHHHHHH
Q 032112 34 KTCADCGTTKTPLWRGGPAGPKSLCNACGIRSR 66 (147)
Q Consensus 34 ~~C~nCgtt~Tp~WR~gp~G~~~LCNaCGl~~~ 66 (147)
..|.+|+.+ ++-.....| ..+|..||+-|.
T Consensus 6 ~~CP~C~~~--~l~~d~~~g-elvC~~CG~v~~ 35 (50)
T 1pft_A 6 KVCPACESA--ELIYDPERG-EIVCAKCGYVIE 35 (50)
T ss_dssp CSCTTTSCC--CEEEETTTT-EEEESSSCCBCC
T ss_pred EeCcCCCCc--ceEEcCCCC-eEECcccCCccc
Confidence 468888763 444444456 378888887664
No 31
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=47.49 E-value=5.8 Score=29.16 Aligned_cols=32 Identities=25% Similarity=0.525 Sum_probs=26.6
Q ss_pred CCccccCCCCCCCccccCCCCCcccchhHHHH
Q 032112 33 KKTCADCGTTKTPLWRGGPAGPKSLCNACGIR 64 (147)
Q Consensus 33 ~~~C~nCgtt~Tp~WR~gp~G~~~LCNaCGl~ 64 (147)
-+.|.+||+..+...-+|..+....|-.||.+
T Consensus 3 ~~~C~~CG~~~~~~~~~G~~~~~~~~~~~~~~ 34 (189)
T 3cng_A 3 MKFCSQCGGEVILRIPEGDTLPRYICPKCHTI 34 (189)
T ss_dssp CCBCTTTCCBCEEECCTTCSSCEEEETTTTEE
T ss_pred cccCchhCCccccccccCCCCcceECCCCCCc
Confidence 57899999999887777777777799999943
No 32
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=47.49 E-value=1.6 Score=27.40 Aligned_cols=34 Identities=32% Similarity=0.572 Sum_probs=24.6
Q ss_pred CCccccCCCCC----CCccccCCCCC--cccchhHHHHHH
Q 032112 33 KKTCADCGTTK----TPLWRGGPAGP--KSLCNACGIRSR 66 (147)
Q Consensus 33 ~~~C~nCgtt~----Tp~WR~gp~G~--~~LCNaCGl~~~ 66 (147)
...|..|+-.+ +-+||...++. -+.|..||..|+
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~ 54 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWR 54 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEE
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEec
Confidence 46799999855 34678776663 368999987664
No 33
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.31 E-value=3.1 Score=31.95 Aligned_cols=30 Identities=30% Similarity=0.630 Sum_probs=22.6
Q ss_pred CccccCCCCCCCcccc--CCCCCcccchhHHHH
Q 032112 34 KTCADCGTTKTPLWRG--GPAGPKSLCNACGIR 64 (147)
Q Consensus 34 ~~C~nCgtt~Tp~WR~--gp~G~~~LCNaCGl~ 64 (147)
-.|..|+..+|-+-+. +..- ..-|+|||-.
T Consensus 104 VlC~~C~sPdT~L~~~~~~r~~-~l~C~ACGa~ 135 (157)
T 2e9h_A 104 VLCPECENPETDLHVNPKKQTI-GNSCKACGYR 135 (157)
T ss_dssp TSCTTTCCSCCEEEEETTTTEE-EEECSSSCCE
T ss_pred EECCCCCCCccEEEEecCCCEE-EEEccCCCCC
Confidence 3699999999999973 3222 3579999954
No 34
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=44.18 E-value=9 Score=23.50 Aligned_cols=37 Identities=24% Similarity=0.332 Sum_probs=31.5
Q ss_pred CCcchhhhhccCcchhhhhhhHHHHhhhcCHHHHHHH
Q 032112 99 GDSLKQRLYALGREVLMQRSSVEKQRKTLGEEEQAAV 135 (147)
Q Consensus 99 ~~~l~~kl~~v~r~~~mkk~~i~~rkrkl~eee~aA~ 135 (147)
.+.|.+++--|.|++++-+..|..-+.|+.+=|.+|.
T Consensus 4 k~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~a~ 40 (42)
T 2l5g_B 4 KEELIQNMDRVDREITMVEQQISKLKKKQQQLEEEAA 40 (42)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4678889999999999999999988888888777763
No 35
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=42.69 E-value=16 Score=28.29 Aligned_cols=37 Identities=27% Similarity=0.570 Sum_probs=30.4
Q ss_pred CCCccccCCCCCCCccccCCCCCcccchhHHHHHHhhcc
Q 032112 32 IKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRR 70 (147)
Q Consensus 32 ~~~~C~nCgtt~Tp~WR~gp~G~~~LCNaCGl~~~k~~~ 70 (147)
.+..|.+||... |.|-.-..|- .+|-.|--.++..+.
T Consensus 16 ~n~~c~dc~~~~-p~w~s~~~g~-~~c~~c~~~hr~lg~ 52 (278)
T 1dcq_A 16 GNDVCCDCGAPD-PTWLSTNLGI-LTCIECSGIHRELGV 52 (278)
T ss_dssp TTTBCTTTCCBS-CCEEETTTTE-EECHHHHHHHHHHCT
T ss_pred CCCcCCCCCCCC-CCeEEecCCe-EEcHHHHHHHhhcCC
Confidence 467899999985 6999999994 899999777776553
No 36
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=42.19 E-value=4.3 Score=33.98 Aligned_cols=31 Identities=23% Similarity=0.549 Sum_probs=21.2
Q ss_pred CCccccCCCCCCCccccCCCCCcccchhHHHH
Q 032112 33 KKTCADCGTTKTPLWRGGPAGPKSLCNACGIR 64 (147)
Q Consensus 33 ~~~C~nCgtt~Tp~WR~gp~G~~~LCNaCGl~ 64 (147)
...|.+|+...+-+--+-..|. ++|..||+-
T Consensus 21 ~~~Cp~C~~~~~~lv~D~~~G~-~vC~~CGlV 51 (345)
T 4bbr_M 21 VLTCPECKVYPPKIVERFSEGD-VVCALCGLV 51 (345)
T ss_dssp -CCCSSCCCSSCCEEEEGGGTE-EEETTTCBE
T ss_pred CCcCCCCCCCCCceeEECCCCc-EEeCCCCCC
Confidence 4479999975454545556674 899999854
No 37
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=41.83 E-value=4 Score=26.46 Aligned_cols=24 Identities=25% Similarity=0.671 Sum_probs=17.6
Q ss_pred CCCccccCCCCCCCccccCCCCCcccchhHHHH
Q 032112 32 IKKTCADCGTTKTPLWRGGPAGPKSLCNACGIR 64 (147)
Q Consensus 32 ~~~~C~nCgtt~Tp~WR~gp~G~~~LCNaCGl~ 64 (147)
..-.|.+||...=| +.+|..||.|
T Consensus 29 ~l~~c~~cG~~~~p---------H~vc~~CG~Y 52 (60)
T 2zjr_Z 29 NLTECPQCHGKKLS---------HHICPNCGYY 52 (60)
T ss_dssp CCEECTTTCCEECT---------TBCCTTTCBS
T ss_pred CceECCCCCCEeCC---------ceEcCCCCcC
Confidence 34579999876433 6899999944
No 38
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=41.62 E-value=7.4 Score=30.93 Aligned_cols=34 Identities=24% Similarity=0.517 Sum_probs=24.3
Q ss_pred CCCccccCCCCCCCccccCCCCCcccchhHHHHHH
Q 032112 32 IKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSR 66 (147)
Q Consensus 32 ~~~~C~nCgtt~Tp~WR~gp~G~~~LCNaCGl~~~ 66 (147)
....|..|+...+-+--+-..|. ++|..||+-..
T Consensus 20 ~~~~CPECGs~~t~IV~D~erGE-~VCsdCGLVLE 53 (197)
T 3k1f_M 20 IVLTCPECKVYPPKIVERFSEGD-VVCALCGLVLS 53 (197)
T ss_dssp CCCCCTTTCCSSCCEEEEGGGTE-EEETTTCBBCC
T ss_pred cCeECcCCCCcCCeEEEeCCCCE-EEEcCCCCCcC
Confidence 34589999986555544555674 89999997543
No 39
>2nll_B Protein (thyroid hormone receptor); complex (transcription regulation/DNA), DNA-binding, nuclear protein, zinc- finger, multigene family; HET: DNA 5IU; 1.90A {Homo sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Probab=39.38 E-value=95 Score=21.61 Aligned_cols=31 Identities=23% Similarity=0.378 Sum_probs=21.3
Q ss_pred CccccCCCCCCCccccCCCCCcccchhHHHHHHhhc
Q 032112 34 KTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKR 69 (147)
Q Consensus 34 ~~C~nCgtt~Tp~WR~gp~G~~~LCNaCGl~~~k~~ 69 (147)
..|.-|+...+-. -.| ...|+||-.+++..-
T Consensus 2 ~~C~VCgd~a~g~----hyG-v~sC~aCk~FFRR~v 32 (103)
T 2nll_B 2 ELCVVCGDKATGY----HYR-CITCEGCKGFFRRTI 32 (103)
T ss_dssp CBCTTTCSBCCSE----ETT-EECCHHHHHHHHHHH
T ss_pred CCCeEeCCcCcCe----ecC-cccHHHhhhhheecc
Confidence 4688898654322 235 478999999998654
No 40
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=38.50 E-value=4.3 Score=26.34 Aligned_cols=23 Identities=30% Similarity=0.901 Sum_probs=17.0
Q ss_pred CCccccCCCCCCCccccCCCCCcccchhHHHH
Q 032112 33 KKTCADCGTTKTPLWRGGPAGPKSLCNACGIR 64 (147)
Q Consensus 33 ~~~C~nCgtt~Tp~WR~gp~G~~~LCNaCGl~ 64 (147)
.-.|.+||...-| +.+|..||.|
T Consensus 30 l~~c~~cGe~~~~---------H~vc~~CG~Y 52 (60)
T 3v2d_5 30 LVPCPECKAMKPP---------HTVCPECGYY 52 (60)
T ss_dssp CEECTTTCCEECT---------TSCCTTTCEE
T ss_pred eeECCCCCCeecc---------eEEcCCCCcC
Confidence 5679999885443 6799999933
No 41
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=29.85 E-value=9.1 Score=31.64 Aligned_cols=34 Identities=29% Similarity=0.620 Sum_probs=25.3
Q ss_pred CCccccCCCCCCCcc----ccCCCCC--cccchhHHHHHH
Q 032112 33 KKTCADCGTTKTPLW----RGGPAGP--KSLCNACGIRSR 66 (147)
Q Consensus 33 ~~~C~nCgtt~Tp~W----R~gp~G~--~~LCNaCGl~~~ 66 (147)
.-.|..|+-.+.-.| |..+++. -+.|..||..|+
T Consensus 268 ~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~~w~ 307 (309)
T 1pqv_S 268 RFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRWK 307 (309)
T ss_pred cccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCCcee
Confidence 457999998887655 5555552 368999999886
No 42
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=29.75 E-value=7.7 Score=29.79 Aligned_cols=35 Identities=31% Similarity=0.599 Sum_probs=23.8
Q ss_pred CCCccccCCCCCCCcc----ccCCCCC--cccchhHHHHHH
Q 032112 32 IKKTCADCGTTKTPLW----RGGPAGP--KSLCNACGIRSR 66 (147)
Q Consensus 32 ~~~~C~nCgtt~Tp~W----R~gp~G~--~~LCNaCGl~~~ 66 (147)
....|..|+-.+.--| |.+.++. -+.|..||..|+
T Consensus 136 ~~~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~~w~ 176 (178)
T 3po3_S 136 DRFTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGNRWK 176 (178)
T ss_dssp SSSCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCCEEC
T ss_pred CCcCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCCeec
Confidence 3568999998774333 4444442 368999998875
No 43
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=28.87 E-value=9.5 Score=24.65 Aligned_cols=19 Identities=37% Similarity=0.924 Sum_probs=13.4
Q ss_pred cCCCCCcccchhHHHHHHh
Q 032112 49 GGPAGPKSLCNACGIRSRK 67 (147)
Q Consensus 49 ~gp~G~~~LCNaCGl~~~k 67 (147)
.+|.||..-|.-||..|-.
T Consensus 7 ~~~~~P~~eC~lC~vkYs~ 25 (55)
T 2yrk_A 7 GGTDGTKPECTLCGVKYSA 25 (55)
T ss_dssp CCCCCCCSCCTTTTCCCCS
T ss_pred CCCCCCCccccccCccccc
Confidence 4667777788888876653
No 44
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=27.69 E-value=19 Score=23.91 Aligned_cols=30 Identities=27% Similarity=0.649 Sum_probs=21.1
Q ss_pred CCCCCccccCCCCCCCccccCCCCCcccchhHHHH
Q 032112 30 NSIKKTCADCGTTKTPLWRGGPAGPKSLCNACGIR 64 (147)
Q Consensus 30 ~~~~~~C~nCgtt~Tp~WR~gp~G~~~LCNaCGl~ 64 (147)
....-.|.+||...... +.. ..-|..||-+
T Consensus 25 ~~v~Y~C~~CG~~~e~~----~~d-~irCp~CG~R 54 (70)
T 1twf_L 25 ATLKYICAECSSKLSLS----RTD-AVRCKDCGHR 54 (70)
T ss_dssp CCCCEECSSSCCEECCC----TTS-TTCCSSSCCC
T ss_pred ceEEEECCCCCCcceeC----CCC-CccCCCCCce
Confidence 44556899999986654 222 3679999974
No 45
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=27.61 E-value=23 Score=22.57 Aligned_cols=37 Identities=22% Similarity=0.352 Sum_probs=29.7
Q ss_pred CCCCCCCcccc--CCCCCCCccccCCCCCcccchhHHHH
Q 032112 28 DENSIKKTCAD--CGTTKTPLWRGGPAGPKSLCNACGIR 64 (147)
Q Consensus 28 ~~~~~~~~C~n--Cgtt~Tp~WR~gp~G~~~LCNaCGl~ 64 (147)
.......+|.. |++---|.++=...|..-.||-|+..
T Consensus 4 ~~~~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~ 42 (59)
T 2yrc_A 4 GSSGEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQR 42 (59)
T ss_dssp SSCCCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCE
T ss_pred cCCCCCcccCCCCCCeEECCceEEECCCCEEEcccCCCc
Confidence 34556778998 99999999988777767899999743
No 46
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.20 E-value=1.1e+02 Score=18.47 Aligned_cols=37 Identities=14% Similarity=0.192 Sum_probs=25.6
Q ss_pred CCCCCCccccCCCCCCCccccCCCCCcccchhHHHHHHh
Q 032112 29 ENSIKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRK 67 (147)
Q Consensus 29 ~~~~~~~C~nCgtt~Tp~WR~gp~G~~~LCNaCGl~~~k 67 (147)
.......|.-|...-+-... -+-| |.+|..|-..|..
T Consensus 16 ~~~~~~~C~IC~~~~~~~~~-~~Cg-H~fC~~Ci~~~~~ 52 (73)
T 2ysl_A 16 KLQEEVICPICLDILQKPVT-IDCG-HNFCLKCITQIGE 52 (73)
T ss_dssp CCCCCCBCTTTCSBCSSEEE-CTTC-CEEEHHHHHHHCS
T ss_pred hCccCCEeccCCcccCCeEE-cCCC-ChhhHHHHHHHHH
Confidence 34456789999876543222 2678 5899999998875
No 47
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=26.43 E-value=46 Score=28.12 Aligned_cols=33 Identities=21% Similarity=0.390 Sum_probs=22.6
Q ss_pred CCCccccCCCCCCCccccCCCCCcccchhHHHHHHhhc
Q 032112 32 IKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKR 69 (147)
Q Consensus 32 ~~~~C~nCgtt~Tp~WR~gp~G~~~LCNaCGl~~~k~~ 69 (147)
....|.-||...+- --.| ..-|++|..++++.-
T Consensus 49 ~~~~C~vC~~~~~g----~hyg-v~~C~~C~~FFrR~~ 81 (419)
T 3dzy_D 49 MAIECRVCGDKASG----FHYG-VHACEGCKGFFRRTI 81 (419)
T ss_dssp -CCCCSSSCSCCCS----BCSS-SBCCHHHHHHHHHHH
T ss_pred CCCcCeECCCcCCC----CccC-cccchhhhHHHccch
Confidence 35679999975432 2345 478999999988643
No 48
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=26.00 E-value=7.8 Score=24.01 Aligned_cols=35 Identities=26% Similarity=0.443 Sum_probs=24.1
Q ss_pred CCCccccCCCCCCCcc----ccCCCCC--cccchhHHHHHH
Q 032112 32 IKKTCADCGTTKTPLW----RGGPAGP--KSLCNACGIRSR 66 (147)
Q Consensus 32 ~~~~C~nCgtt~Tp~W----R~gp~G~--~~LCNaCGl~~~ 66 (147)
....|..|+-.+.--| |+.+++. -+.|..||..|+
T Consensus 8 ~~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w~ 48 (50)
T 1tfi_A 8 DLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 48 (50)
T ss_dssp CCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEEE
T ss_pred CccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeEE
Confidence 3457999998876555 5565553 258988987664
No 49
>2l1q_A Liver-expressed antimicrobial peptide 2; polypeptide, disulfides, antimicrobial protein, LEAP-2; NMR {Homo sapiens}
Probab=25.50 E-value=19 Score=21.86 Aligned_cols=9 Identities=56% Similarity=1.239 Sum_probs=6.6
Q ss_pred CCccccCCC
Q 032112 44 TPLWRGGPA 52 (147)
Q Consensus 44 Tp~WR~gp~ 52 (147)
||+||--..
T Consensus 2 TP~WR~vs~ 10 (40)
T 2l1q_A 2 TPFWRGVSL 10 (40)
T ss_dssp CCTTSSCSS
T ss_pred cchhhhhcC
Confidence 899996443
No 50
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=25.32 E-value=40 Score=28.23 Aligned_cols=36 Identities=28% Similarity=0.601 Sum_probs=28.7
Q ss_pred CCCccccCCCCCCCccccCCCCCcccchhHHHHHHhhc
Q 032112 32 IKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKR 69 (147)
Q Consensus 32 ~~~~C~nCgtt~Tp~WR~gp~G~~~LCNaCGl~~~k~~ 69 (147)
.+..|.+|++ .-|.|-.-..| ..+|-.|.=-+|.-+
T Consensus 22 ~n~~c~dc~~-~~p~w~s~~~~-~~~c~~c~~~hr~lg 57 (497)
T 3lvq_E 22 GNSQCCDCGA-ADPTWLSTNLG-VLTCIQCSGVHRELG 57 (497)
T ss_dssp TTTBCTTTCC-BSCCEEETTTT-EEECHHHHHHHHHHC
T ss_pred CCCcccCCCC-CCCCEEEechh-HHhHHhhHHHHHhhc
Confidence 4678999996 45899999899 599999976666543
No 51
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=24.96 E-value=17 Score=23.40 Aligned_cols=15 Identities=27% Similarity=0.791 Sum_probs=12.9
Q ss_pred ccccCCCCCCCcccc
Q 032112 35 TCADCGTTKTPLWRG 49 (147)
Q Consensus 35 ~C~nCgtt~Tp~WR~ 49 (147)
.|.||+..+|+.|..
T Consensus 15 ~CpnC~~~tt~~~~G 29 (59)
T 3lpe_B 15 ICPICHSPTSENWIG 29 (59)
T ss_dssp BCTTTCCBEESCEEC
T ss_pred CCCCCCCCccCCEee
Confidence 599999888999973
No 52
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=24.85 E-value=21 Score=27.76 Aligned_cols=28 Identities=21% Similarity=0.577 Sum_probs=20.3
Q ss_pred CCccccCCCCCCCccccCCCCCcccchhHHH
Q 032112 33 KKTCADCGTTKTPLWRGGPAGPKSLCNACGI 63 (147)
Q Consensus 33 ~~~C~nCgtt~Tp~WR~gp~G~~~LCNaCGl 63 (147)
...|-.||.+.. .|-. ..| ...||.||-
T Consensus 14 ~~~CP~Cg~~d~-~~~~-~dg-~~~C~~Cg~ 41 (255)
T 1nui_A 14 HIPCDNCGSSDG-NSLF-SDG-HTFCYVCEK 41 (255)
T ss_dssp EECCSSSCCSSC-EEEE-TTS-CEEETTTCC
T ss_pred CCcCCCCCCCCC-ceEe-CCC-CeecccCCC
Confidence 568999999764 5533 345 389999994
No 53
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=24.33 E-value=51 Score=20.49 Aligned_cols=30 Identities=23% Similarity=0.585 Sum_probs=20.5
Q ss_pred CccccCCCCCCCcc--ccCCCCCcccchhHHHHH
Q 032112 34 KTCADCGTTKTPLW--RGGPAGPKSLCNACGIRS 65 (147)
Q Consensus 34 ~~C~nCgtt~Tp~W--R~gp~G~~~LCNaCGl~~ 65 (147)
..|+-||-++...= =.|| | .++||.|-...
T Consensus 12 ~~CSFCGk~~~ev~~LIaGp-g-v~IC~eCi~~~ 43 (51)
T 2ds5_A 12 LYCSFCGKSQHEVRKLIAGP-S-VYICDECVDLC 43 (51)
T ss_dssp CBCTTTCCBTTTSSCEEECS-S-CEEEHHHHHHH
T ss_pred cEecCCCCCHHHhcccCCCC-C-CEehHHHHHHH
Confidence 57999999875332 2344 4 48999997543
No 54
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=23.06 E-value=46 Score=22.02 Aligned_cols=31 Identities=23% Similarity=0.569 Sum_probs=21.1
Q ss_pred CccccCCCCCCCcc--ccCCCCCcccchhHHHHHH
Q 032112 34 KTCADCGTTKTPLW--RGGPAGPKSLCNACGIRSR 66 (147)
Q Consensus 34 ~~C~nCgtt~Tp~W--R~gp~G~~~LCNaCGl~~~ 66 (147)
..|+-||-++...= =.|| | .++||.|-....
T Consensus 19 ~~CSFCGK~e~eV~~LIaGp-g-vyICdeCI~~c~ 51 (67)
T 1ovx_A 19 LYCSFCGKSQHEVRKLIAGP-S-VYICDECVDLCN 51 (67)
T ss_dssp CCCTTTCCCTTTSSSEEECS-S-CEEEHHHHHHHH
T ss_pred cEecCCCCCHHHHcccCCCC-C-CChhHHHHHHHH
Confidence 57999999875332 2455 4 489999975543
No 55
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=21.74 E-value=22 Score=24.98 Aligned_cols=28 Identities=21% Similarity=0.636 Sum_probs=19.3
Q ss_pred CCCccccCCCCCCCccccCCCCCcc-cchhHHHHH
Q 032112 32 IKKTCADCGTTKTPLWRGGPAGPKS-LCNACGIRS 65 (147)
Q Consensus 32 ~~~~C~nCgtt~Tp~WR~gp~G~~~-LCNaCGl~~ 65 (147)
..-.|.+||..-+.. .+.. .|-.||-..
T Consensus 72 ~~~~C~~CG~~~e~~------~~~~~~CP~Cgs~~ 100 (119)
T 2kdx_A 72 VELECKDCSHVFKPN------ALDYGVCEKCHSKN 100 (119)
T ss_dssp CEEECSSSSCEECSC------CSTTCCCSSSSSCC
T ss_pred ceEEcCCCCCEEeCC------CCCCCcCccccCCC
Confidence 346899999887652 2235 799998663
No 56
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=21.00 E-value=45 Score=21.28 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=17.9
Q ss_pred CCCCCCCCCccccCCCCCCCccc
Q 032112 26 SSDENSIKKTCADCGTTKTPLWR 48 (147)
Q Consensus 26 ~~~~~~~~~~C~nCgtt~Tp~WR 48 (147)
+++....-..|..|.+.++|+-|
T Consensus 4 ~~~~~eD~WkC~~C~k~N~Pl~r 26 (53)
T 2cr8_A 4 GSSGSEDEWQCTECKKFNSPSKR 26 (53)
T ss_dssp CSSCCSCCEECSSSCCEECSSCC
T ss_pred CcCCCcceeecccccccCCCccc
Confidence 34556667899999999999854
No 57
>3mhs_E SAGA-associated factor 73; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_E 4fip_D 4fjc_D 4fk5_E 3m99_D
Probab=20.99 E-value=17 Score=25.88 Aligned_cols=9 Identities=33% Similarity=1.062 Sum_probs=6.9
Q ss_pred ccchhHHHH
Q 032112 56 SLCNACGIR 64 (147)
Q Consensus 56 ~LCNaCGl~ 64 (147)
-+||+||..
T Consensus 76 RvCn~CGkP 84 (96)
T 3mhs_E 76 RVCEKCGKP 84 (96)
T ss_dssp EEETTTCCE
T ss_pred hhhhccCCc
Confidence 489999854
No 58
>2han_B Ecdysone receptor; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 PDB: 1r0o_B 1r0n_B
Probab=20.85 E-value=57 Score=23.37 Aligned_cols=36 Identities=17% Similarity=0.320 Sum_probs=24.3
Q ss_pred CCCCCCccccCCCCCCCccccCCCCCcccchhHHHHHHhhc
Q 032112 29 ENSIKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKR 69 (147)
Q Consensus 29 ~~~~~~~C~nCgtt~Tp~WR~gp~G~~~LCNaCGl~~~k~~ 69 (147)
+......|.-|+...+-. -.| ...|+||-.+++..-
T Consensus 4 p~~~~~~C~VCg~~a~g~----hyG-v~sC~aCk~FFRR~v 39 (119)
T 2han_B 4 PRVQEELCLVCGDRASGY----HYN-ALTCEGCKGFFRRSV 39 (119)
T ss_dssp -CCCSCBCTTTCSBCCEE----ETT-EEECHHHHHHHHHHH
T ss_pred CCCCCCcCeEeCCcCCcc----eEC-chhHHhhHHhhhhhe
Confidence 344567899999754321 234 478999999998654
Done!