Query 032114
Match_columns 147
No_of_seqs 113 out of 586
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 15:45:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032114.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032114hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vqoq1 b.34.5.1 (Q:1-95) Ribo 43.2 6 0.00044 25.3 2.1 27 42-70 31-57 (95)
2 d2asba1 b.40.4.5 (A:108-183) S 29.5 20 0.0014 21.5 2.8 23 35-60 44-66 (76)
3 d1hh2p1 b.40.4.5 (P:127-198) S 29.0 19 0.0014 21.3 2.6 18 42-59 44-61 (72)
4 d1xg8a_ c.47.1.17 (A:) Hypothe 19.9 37 0.0027 22.0 2.8 33 103-136 11-43 (111)
5 d1uz5a1 b.85.6.1 (A:329-402) M 19.4 32 0.0023 20.0 2.3 22 32-54 48-70 (74)
6 d1r7ma2 d.95.2.1 (A:121-225) D 19.2 38 0.0027 21.1 2.8 28 113-141 41-68 (105)
7 d1ijwc_ a.4.1.2 (C:) HIN recom 16.9 52 0.0038 17.7 2.6 20 118-137 4-23 (47)
8 d2uubm1 a.156.1.1 (M:2-126) Ri 15.6 29 0.0021 22.6 1.5 22 118-139 45-66 (125)
9 d1pmia_ b.82.1.3 (A:) Phosphom 13.5 16 0.0012 28.6 -0.4 28 28-56 271-298 (440)
10 d2ix0a3 b.40.4.5 (A:558-644) E 13.0 34 0.0025 20.7 1.2 22 42-63 59-80 (87)
No 1
>d1vqoq1 b.34.5.1 (Q:1-95) Ribosomal proteins L21e {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=43.24 E-value=6 Score=25.34 Aligned_cols=27 Identities=7% Similarity=0.164 Sum_probs=21.9
Q ss_pred CCCCCCCceEEEEeecccCCCCccccccc
Q 032114 42 HKHVVSDPLSVKVNSITSIDTKMPFSYYS 70 (147)
Q Consensus 42 ~~Y~~Gd~V~v~vNkl~s~~t~~~Y~Yy~ 70 (147)
+.|+.||.|.|.+|- |...-+|+.+|.
T Consensus 31 ~~y~~GD~V~I~idp--sv~kGmPh~~yh 57 (95)
T d1vqoq1 31 EEFDDGEKVHLKIDP--SVPNGRFHPRFD 57 (95)
T ss_dssp CCCCTTCEEEECCCT--TCCSSCCCGGGT
T ss_pred eeccCCCEEEEEecC--CeecCccceeec
Confidence 789999999998764 446678888875
No 2
>d2asba1 b.40.4.5 (A:108-183) S1 domain of NusA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=29.48 E-value=20 Score=21.49 Aligned_cols=23 Identities=13% Similarity=-0.025 Sum_probs=18.6
Q ss_pred eccCCCCCCCCCCCceEEEEeecccC
Q 032114 35 YLRDNYPHKHVVSDPLSVKVNSITSI 60 (147)
Q Consensus 35 ~lpg~~p~~Y~~Gd~V~v~vNkl~s~ 60 (147)
.+||.. |..||.|.+++-++...
T Consensus 44 qip~E~---y~~Gdrik~~i~~V~~~ 66 (76)
T d2asba1 44 QVPGES---YEHGNRLRCYVVGVTRG 66 (76)
T ss_dssp SCTTCC---CCTTCEEEEEEEEEECC
T ss_pred cCCCcc---cCCCCEEEEEEEEEEec
Confidence 456655 99999999999988755
No 3
>d1hh2p1 b.40.4.5 (P:127-198) S1 domain of NusA {Thermotoga maritima [TaxId: 2336]}
Probab=28.96 E-value=19 Score=21.30 Aligned_cols=18 Identities=11% Similarity=0.147 Sum_probs=15.1
Q ss_pred CCCCCCCceEEEEeeccc
Q 032114 42 HKHVVSDPLSVKVNSITS 59 (147)
Q Consensus 42 ~~Y~~Gd~V~v~vNkl~s 59 (147)
..|..||.|.+++.++..
T Consensus 44 E~~~~Gdrik~~i~~V~~ 61 (72)
T d1hh2p1 44 EEIKAGDLVKVYIIDVVK 61 (72)
T ss_dssp CCCCTTCEEEEEEEEEEE
T ss_pred CCCCCCCEEEEEEEEEEE
Confidence 349999999999988764
No 4
>d1xg8a_ c.47.1.17 (A:) Hypothetical protein SA0798 {Staphylococcus aureus [TaxId: 1280]}
Probab=19.94 E-value=37 Score=21.96 Aligned_cols=33 Identities=21% Similarity=0.302 Sum_probs=21.9
Q ss_pred EEecccccceeeccccCCCHHHHHHHHHHHhhcc
Q 032114 103 FKTYTNETDIFFCKTDPLSKDNFELLKRRIDEMY 136 (147)
Q Consensus 103 i~f~~n~~~c~lC~~~~l~~~~~~~l~~~I~~~Y 136 (147)
.-++.++. |.-|.-.+-+++..+.|+.+|.+.|
T Consensus 11 ~VYGA~~i-CASCV~aPSSkeTyEWLqaal~RKy 43 (111)
T d1xg8a_ 11 VVYGADVI-CASCVNAPTSKDIYDWLQPLLKRKY 43 (111)
T ss_dssp EEEECSSC-CGGGSSSCCHHHHHHHHHHHHHHHC
T ss_pred EEEccccc-chhhcCCCCchhHHHHHHHHHhCcC
Confidence 44677887 8778533344566777777777665
No 5
>d1uz5a1 b.85.6.1 (A:329-402) Molybdenum cofactor biosynthesis protein MoeA, C-terminal domain {Archaeon Pyrococcus horikoshii, PH0582 [TaxId: 53953]}
Probab=19.41 E-value=32 Score=20.00 Aligned_cols=22 Identities=14% Similarity=0.223 Sum_probs=15.8
Q ss_pred cee-eccCCCCCCCCCCCceEEEE
Q 032114 32 LGF-YLRDNYPHKHVVSDPLSVKV 54 (147)
Q Consensus 32 ~af-~lpg~~p~~Y~~Gd~V~v~v 54 (147)
.++ .+|... ..+..||.|.|++
T Consensus 48 ngli~lp~~~-~~i~~G~~V~V~l 70 (74)
T d1uz5a1 48 DGFVEIPETV-ESLDEGEEVEVTL 70 (74)
T ss_dssp CEEEEECSSC-CBCCSEEEEEEEE
T ss_pred CEEEEcCCCC-CccCCCCEEEEEE
Confidence 555 445544 5699999999985
No 6
>d1r7ma2 d.95.2.1 (A:121-225) DNA endonuclease I-SceI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=19.25 E-value=38 Score=21.10 Aligned_cols=28 Identities=11% Similarity=0.311 Sum_probs=23.4
Q ss_pred eeccccCCCHHHHHHHHHHHhhcceEEEE
Q 032114 113 FFCKTDPLSKDNFELLKRRIDEMYQVFFF 141 (147)
Q Consensus 113 ~lC~~~~l~~~~~~~l~~~I~~~Y~~~~~ 141 (147)
.+|+ ..++.+|++.|.+.+.+.|-.+-.
T Consensus 41 ~l~T-~~Ft~~e~~~L~~~L~~kf~l~~~ 68 (105)
T d1r7ma2 41 VLNT-QSFTFEEVEYLVKGLRNKFQLNCY 68 (105)
T ss_dssp EECC-TTSCHHHHHHHHHHHHHHHCCCEE
T ss_pred EEEe-CCCCHHHHHHHHHHHHHHhCceEE
Confidence 7897 689999999999999988765443
No 7
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}
Probab=16.91 E-value=52 Score=17.67 Aligned_cols=20 Identities=15% Similarity=0.232 Sum_probs=17.0
Q ss_pred cCCCHHHHHHHHHHHhhcce
Q 032114 118 DPLSKDNFELLKRRIDEMYQ 137 (147)
Q Consensus 118 ~~l~~~~~~~l~~~I~~~Y~ 137 (147)
..+|+++++..+++++++..
T Consensus 4 ~~lt~~q~~~a~~l~~~G~s 23 (47)
T d1ijwc_ 4 RAINKHEQEQISRLLEKGHP 23 (47)
T ss_dssp CSSCHHHHHHHHHHHHTTCC
T ss_pred CcCCHHHHHHHHHHHHCCCC
Confidence 47999999999999988753
No 8
>d2uubm1 a.156.1.1 (M:2-126) Ribosomal protein S13 {Thermus thermophilus [TaxId: 274]}
Probab=15.63 E-value=29 Score=22.59 Aligned_cols=22 Identities=9% Similarity=0.274 Sum_probs=18.7
Q ss_pred cCCCHHHHHHHHHHHhhcceEE
Q 032114 118 DPLSKDNFELLKRRIDEMYQVF 139 (147)
Q Consensus 118 ~~l~~~~~~~l~~~I~~~Y~~~ 139 (147)
..++++|++.+++.|++.|.++
T Consensus 45 ~~Lt~~qi~~I~~~i~~~~~i~ 66 (125)
T d2uubm1 45 KDLTEAEVVRLREYVENTWKLE 66 (125)
T ss_dssp GGCCHHHHHHHHHHHHHHSCCT
T ss_pred ccccHHHHHHHHHHHhhhhhhH
Confidence 4689999999999999887653
No 9
>d1pmia_ b.82.1.3 (A:) Phosphomannose isomerase {Yeast (Candida albicans) [TaxId: 5476]}
Probab=13.46 E-value=16 Score=28.61 Aligned_cols=28 Identities=18% Similarity=0.335 Sum_probs=23.9
Q ss_pred hcccceeeccCCCCCCCCCCCceEEEEee
Q 032114 28 QSSCLGFYLRDNYPHKHVVSDPLSVKVNS 56 (147)
Q Consensus 28 ~~~~~af~lpg~~p~~Y~~Gd~V~v~vNk 56 (147)
... +++|+|.-.+|.|-.|.-|++..|+
T Consensus 271 ~pG-daifvpaG~~HAyl~G~~vEima~S 298 (440)
T d1pmia_ 271 NKG-EAMFLQAKDPHAYISGDIIECMAAS 298 (440)
T ss_dssp CTT-CEEEECTTCCEEEEEEEEEEEEESC
T ss_pred ccc-ceEEcCCCCceEecCCcEEEEeccc
Confidence 345 7899999999999999999998754
No 10
>d2ix0a3 b.40.4.5 (A:558-644) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]}
Probab=13.02 E-value=34 Score=20.67 Aligned_cols=22 Identities=14% Similarity=0.160 Sum_probs=18.2
Q ss_pred CCCCCCCceEEEEeecccCCCC
Q 032114 42 HKHVVSDPLSVKVNSITSIDTK 63 (147)
Q Consensus 42 ~~Y~~Gd~V~v~vNkl~s~~t~ 63 (147)
..|+.||+|.|.|-++.+.+..
T Consensus 59 ~~~~~Gd~V~V~v~~vd~~~r~ 80 (87)
T d2ix0a3 59 TVYKVTDVIDVTIAEVRMETRS 80 (87)
T ss_dssp EEEETTCEEEEEEEEEETTTTE
T ss_pred EEEECCCEEEEEEEEEecccCe
Confidence 3699999999999999877543
Done!