Query 032116
Match_columns 147
No_of_seqs 103 out of 137
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 09:48:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032116.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032116hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04895 ACT_ACR_1 ACT domain-c 99.8 4.8E-20 1E-24 128.8 7.8 51 95-145 1-51 (72)
2 cd04897 ACT_ACR_3 ACT domain-c 99.8 2.8E-18 6E-23 120.9 7.6 51 95-145 1-51 (75)
3 PRK05007 PII uridylyl-transfer 99.7 1.3E-16 2.9E-21 149.6 9.2 65 81-145 794-858 (884)
4 PRK01759 glnD PII uridylyl-tra 99.7 1.3E-16 2.8E-21 149.3 9.0 65 81-145 769-833 (854)
5 cd04896 ACT_ACR-like_3 ACT dom 99.6 4.2E-16 9.1E-21 109.9 7.0 46 96-141 1-48 (75)
6 TIGR01693 UTase_glnD [Protein- 99.5 7E-14 1.5E-18 129.8 9.7 65 81-145 765-829 (850)
7 PRK04374 PII uridylyl-transfer 99.4 4E-13 8.6E-18 126.8 9.3 65 81-145 782-846 (869)
8 PRK00275 glnD PII uridylyl-tra 99.4 4.1E-13 8.8E-18 126.7 9.3 65 81-145 800-864 (895)
9 PRK05092 PII uridylyl-transfer 99.4 6.9E-13 1.5E-17 124.8 9.5 65 81-145 829-893 (931)
10 cd04925 ACT_ACR_2 ACT domain-c 99.4 7.6E-13 1.7E-17 89.9 7.1 50 96-145 1-50 (74)
11 cd04927 ACT_ACR-like_2 Second 99.4 1.6E-12 3.5E-17 89.2 7.6 49 97-145 2-51 (76)
12 PRK03381 PII uridylyl-transfer 99.4 1.3E-12 2.8E-17 121.6 9.1 65 81-145 693-757 (774)
13 cd04900 ACT_UUR-like_1 ACT dom 99.4 1.9E-12 4.2E-17 86.9 7.5 51 95-145 1-52 (73)
14 COG2844 GlnD UTP:GlnB (protein 99.3 2.5E-12 5.5E-17 122.3 7.9 63 83-145 779-841 (867)
15 PRK03059 PII uridylyl-transfer 99.3 5.5E-12 1.2E-16 118.6 9.0 64 81-144 772-835 (856)
16 TIGR01693 UTase_glnD [Protein- 99.2 7.8E-11 1.7E-15 109.7 9.6 65 81-145 654-719 (850)
17 PRK01759 glnD PII uridylyl-tra 99.2 8.2E-11 1.8E-15 110.7 9.4 65 81-145 663-728 (854)
18 PRK05007 PII uridylyl-transfer 99.1 2.7E-10 5.9E-15 107.5 9.4 65 81-145 687-752 (884)
19 cd04926 ACT_ACR_4 C-terminal 99.1 5.2E-10 1.1E-14 75.5 7.6 50 96-145 2-51 (72)
20 cd04899 ACT_ACR-UUR-like_2 C-t 99.1 7.2E-10 1.6E-14 71.7 7.5 50 96-145 1-50 (70)
21 PRK05092 PII uridylyl-transfer 98.7 5.6E-08 1.2E-12 92.1 9.4 65 81-145 718-783 (931)
22 cd04873 ACT_UUR-ACR-like ACT d 98.7 1.6E-07 3.5E-12 59.8 7.4 50 96-145 1-50 (70)
23 PRK00275 glnD PII uridylyl-tra 98.6 1.3E-07 2.8E-12 89.9 9.4 64 82-145 688-755 (895)
24 cd04928 ACT_TyrKc Uncharacteri 98.6 2.3E-07 4.9E-12 64.6 7.1 48 98-145 4-52 (68)
25 PF01842 ACT: ACT domain; Int 98.5 5.5E-07 1.2E-11 56.7 6.9 49 96-144 1-51 (66)
26 PRK03381 PII uridylyl-transfer 98.5 5.1E-07 1.1E-11 84.6 9.3 64 81-145 586-649 (774)
27 PRK03059 PII uridylyl-transfer 98.2 6.7E-06 1.5E-10 78.1 9.0 65 81-145 664-729 (856)
28 PRK04374 PII uridylyl-transfer 98.0 2.5E-05 5.5E-10 74.6 9.4 64 82-145 676-741 (869)
29 cd04894 ACT_ACR-like_1 ACT dom 97.8 3.7E-05 8E-10 54.8 4.6 49 96-144 1-49 (69)
30 PRK00227 glnD PII uridylyl-tra 97.7 4E-05 8.7E-10 72.1 4.0 54 80-143 622-675 (693)
31 PF13740 ACT_6: ACT domain; PD 97.6 0.00027 5.8E-09 48.0 6.5 46 97-142 4-49 (76)
32 cd04870 ACT_PSP_1 CT domains f 97.5 0.0003 6.6E-09 47.3 5.5 45 97-141 1-45 (75)
33 PF13291 ACT_4: ACT domain; PD 97.4 0.00081 1.8E-08 45.1 6.5 38 95-132 6-43 (80)
34 cd04875 ACT_F4HF-DF N-terminal 97.3 0.00074 1.6E-08 44.9 5.8 35 97-131 1-35 (74)
35 cd04877 ACT_TyrR N-terminal AC 97.3 0.00055 1.2E-08 45.8 5.0 34 98-131 3-36 (74)
36 cd04893 ACT_GcvR_1 ACT domains 97.3 0.00086 1.9E-08 45.8 5.6 39 97-135 3-41 (77)
37 cd04869 ACT_GcvR_2 ACT domains 97.2 0.0015 3.3E-08 43.4 5.8 36 97-132 1-36 (81)
38 cd04887 ACT_MalLac-Enz ACT_Mal 97.0 0.0038 8.2E-08 40.7 6.7 35 98-132 2-36 (74)
39 cd02116 ACT ACT domains are co 96.9 0.0063 1.4E-07 34.0 6.3 46 98-143 1-47 (60)
40 cd04886 ACT_ThrD-II-like C-ter 96.9 0.0046 9.9E-08 38.6 6.2 34 98-131 1-34 (73)
41 cd04881 ACT_HSDH-Hom ACT_HSDH_ 96.9 0.0059 1.3E-07 38.6 6.7 45 98-142 3-48 (79)
42 cd04879 ACT_3PGDH-like ACT_3PG 96.9 0.005 1.1E-07 38.1 6.0 44 98-141 2-47 (71)
43 cd04878 ACT_AHAS N-terminal AC 96.9 0.0084 1.8E-07 37.3 6.9 46 98-143 3-49 (72)
44 cd04872 ACT_1ZPV ACT domain pr 96.8 0.0026 5.7E-08 43.8 4.9 42 97-138 3-44 (88)
45 PRK00194 hypothetical protein; 96.7 0.0037 8E-08 42.9 4.8 40 96-135 4-43 (90)
46 COG2844 GlnD UTP:GlnB (protein 96.5 0.0084 1.8E-07 58.6 7.5 66 80-145 669-735 (867)
47 cd04889 ACT_PDH-BS-like C-term 96.5 0.014 3.1E-07 36.5 6.2 46 98-143 1-47 (56)
48 cd04874 ACT_Af1403 N-terminal 96.5 0.021 4.6E-07 35.7 6.9 37 97-133 2-38 (72)
49 cd04876 ACT_RelA-SpoT ACT dom 96.5 0.018 3.8E-07 34.1 6.2 36 98-133 1-36 (71)
50 cd04903 ACT_LSD C-terminal ACT 96.5 0.02 4.3E-07 35.6 6.7 33 98-130 2-34 (71)
51 cd04908 ACT_Bt0572_1 N-termina 96.4 0.011 2.3E-07 38.6 5.3 38 97-134 3-40 (66)
52 cd04882 ACT_Bt0572_2 C-termina 96.3 0.013 2.9E-07 36.7 5.3 36 97-132 1-36 (65)
53 cd04888 ACT_PheB-BS C-terminal 96.1 0.031 6.8E-07 36.2 6.3 34 98-131 3-36 (76)
54 PRK11589 gcvR glycine cleavage 95.8 0.011 2.5E-07 47.7 4.0 48 92-139 5-52 (190)
55 PRK11589 gcvR glycine cleavage 95.7 0.021 4.6E-07 46.2 5.0 45 96-140 96-142 (190)
56 PRK08577 hypothetical protein; 95.7 0.13 2.9E-06 38.4 8.9 41 92-132 53-93 (136)
57 cd04909 ACT_PDH-BS C-terminal 95.5 0.067 1.5E-06 34.5 6.0 34 98-131 4-37 (69)
58 cd04884 ACT_CBS C-terminal ACT 95.4 0.084 1.8E-06 34.7 6.3 34 98-131 2-35 (72)
59 cd04905 ACT_CM-PDT C-terminal 95.3 0.15 3.2E-06 34.4 7.3 46 96-141 2-48 (80)
60 PRK06027 purU formyltetrahydro 95.2 0.054 1.2E-06 45.8 6.1 39 95-133 6-46 (286)
61 cd04902 ACT_3PGDH-xct C-termin 94.6 0.1 2.2E-06 33.3 4.9 32 99-130 3-34 (73)
62 cd04883 ACT_AcuB C-terminal AC 94.5 0.29 6.2E-06 31.4 6.9 36 96-131 2-37 (72)
63 cd04901 ACT_3PGDH C-terminal A 94.5 0.028 6.2E-07 35.8 2.1 36 99-134 3-38 (69)
64 COG3830 ACT domain-containing 94.4 0.062 1.3E-06 40.0 3.8 30 96-125 4-33 (90)
65 PRK07334 threonine dehydratase 93.7 0.23 5E-06 43.2 6.6 36 96-131 327-362 (403)
66 cd04904 ACT_AAAH ACT domain of 93.3 0.16 3.5E-06 34.4 4.2 29 98-126 3-31 (74)
67 PRK04435 hypothetical protein; 93.3 0.42 9.2E-06 36.8 6.8 48 85-132 59-106 (147)
68 TIGR00119 acolac_sm acetolacta 93.2 0.5 1.1E-05 37.4 7.3 36 97-132 3-38 (157)
69 PRK13011 formyltetrahydrofolat 93.1 0.26 5.7E-06 41.9 6.0 34 96-129 8-41 (286)
70 PRK13010 purU formyltetrahydro 93.1 0.2 4.4E-06 42.7 5.3 34 96-129 10-43 (289)
71 PRK11092 bifunctional (p)ppGpp 92.8 0.25 5.4E-06 47.1 6.0 42 93-134 624-665 (702)
72 COG0317 SpoT Guanosine polypho 92.6 0.36 7.9E-06 46.5 6.8 55 85-139 616-671 (701)
73 TIGR00655 PurU formyltetrahydr 92.6 0.34 7.3E-06 41.2 5.9 35 97-131 2-36 (280)
74 cd04931 ACT_PAH ACT domain of 92.2 0.41 8.9E-06 34.5 5.2 54 88-141 7-61 (90)
75 CHL00100 ilvH acetohydroxyacid 92.2 0.55 1.2E-05 37.9 6.4 34 97-130 4-37 (174)
76 PRK10872 relA (p)ppGpp synthet 92.0 0.77 1.7E-05 44.4 8.2 39 94-132 665-703 (743)
77 PRK11895 ilvH acetolactate syn 91.6 1 2.2E-05 35.9 7.2 36 97-132 4-39 (161)
78 COG2716 GcvR Glycine cleavage 91.3 0.19 4.2E-06 41.4 2.9 30 96-125 93-122 (176)
79 cd04880 ACT_AAAH-PDT-like ACT 91.1 1.6 3.4E-05 28.8 6.7 28 100-127 4-31 (75)
80 TIGR00691 spoT_relA (p)ppGpp s 90.6 0.99 2.1E-05 42.8 7.3 43 93-135 608-650 (683)
81 PRK00227 glnD PII uridylyl-tra 89.9 0.99 2.2E-05 43.2 6.7 45 97-142 548-593 (693)
82 PRK08818 prephenate dehydrogen 89.6 1.1 2.4E-05 39.6 6.4 47 94-141 294-341 (370)
83 cd04929 ACT_TPH ACT domain of 88.9 0.81 1.7E-05 31.7 4.1 31 98-128 3-33 (74)
84 PRK06737 acetolactate synthase 88.7 2.3 4.9E-05 30.3 6.3 37 97-133 4-40 (76)
85 PRK08178 acetolactate synthase 88.6 2.5 5.4E-05 31.6 6.7 50 90-140 4-53 (96)
86 PRK13562 acetolactate synthase 87.9 2.2 4.7E-05 31.3 5.9 42 97-138 4-45 (84)
87 cd04885 ACT_ThrD-I Tandem C-te 87.3 2.3 4.9E-05 27.9 5.4 33 98-131 1-33 (68)
88 cd04891 ACT_AK-LysC-DapG-like_ 87.0 3.1 6.8E-05 24.8 5.5 28 102-129 8-35 (61)
89 COG2716 GcvR Glycine cleavage 86.2 0.34 7.4E-06 39.9 1.1 48 92-139 2-49 (176)
90 PRK11899 prephenate dehydratas 85.9 4.3 9.3E-05 34.7 7.6 47 95-141 194-241 (279)
91 cd04906 ACT_ThrD-I_1 First of 85.7 4 8.7E-05 28.1 6.1 27 97-125 3-29 (85)
92 cd04930 ACT_TH ACT domain of t 85.6 2.2 4.7E-05 32.0 5.1 33 95-127 41-73 (115)
93 COG4747 ACT domain-containing 84.8 3 6.5E-05 33.4 5.7 40 97-136 71-110 (142)
94 cd04913 ACT_AKii-LysC-BS-like_ 83.8 3.5 7.6E-05 25.7 4.7 27 102-128 9-35 (75)
95 cd04871 ACT_PSP_2 ACT domains 82.6 0.98 2.1E-05 31.6 2.0 29 97-125 1-30 (84)
96 PF13840 ACT_7: ACT domain ; P 82.1 3.4 7.5E-05 27.4 4.4 36 92-127 3-42 (65)
97 COG0077 PheA Prephenate dehydr 81.2 5.7 0.00012 34.5 6.5 48 94-141 193-241 (279)
98 PRK11152 ilvM acetolactate syn 81.1 7.8 0.00017 27.4 6.1 34 97-130 5-38 (76)
99 PF13710 ACT_5: ACT domain; PD 80.8 6.8 0.00015 26.1 5.5 30 104-133 1-30 (63)
100 COG4747 ACT domain-containing 80.4 3.7 8.1E-05 32.9 4.7 39 98-136 6-44 (142)
101 cd04898 ACT_ACR-like_4 ACT dom 80.3 0.6 1.3E-05 34.1 0.2 47 98-144 3-53 (77)
102 PRK06382 threonine dehydratase 80.2 8.2 0.00018 33.8 7.2 38 92-129 327-364 (406)
103 PRK10622 pheA bifunctional cho 79.8 7.1 0.00015 34.7 6.8 47 95-141 297-344 (386)
104 PRK11790 D-3-phosphoglycerate 78.9 3.2 6.9E-05 36.8 4.3 61 77-139 322-382 (409)
105 cd04868 ACT_AK-like ACT domain 77.1 5.9 0.00013 23.1 3.9 33 97-129 2-37 (60)
106 TIGR00719 sda_beta L-serine de 76.6 12 0.00025 30.3 6.6 49 84-132 134-185 (208)
107 COG0788 PurU Formyltetrahydrof 76.4 6.6 0.00014 34.7 5.5 38 94-131 6-43 (287)
108 PRK06349 homoserine dehydrogen 75.7 9.5 0.00021 33.8 6.4 48 97-144 350-397 (426)
109 COG1707 ACT domain-containing 75.2 6.2 0.00013 33.4 4.9 37 98-134 5-41 (218)
110 TIGR01127 ilvA_1Cterm threonin 73.8 4.7 0.0001 34.5 3.9 33 97-129 307-339 (380)
111 PRK10820 DNA-binding transcrip 67.4 8.6 0.00019 34.9 4.3 36 98-133 3-38 (520)
112 PRK11898 prephenate dehydratas 66.7 14 0.0003 31.4 5.2 47 95-141 196-244 (283)
113 cd04919 ACT_AK-Hom3_2 ACT doma 65.1 31 0.00068 21.5 6.0 34 96-129 2-38 (66)
114 TIGR01270 Trp_5_monoox tryptop 64.4 13 0.00029 34.6 5.0 39 88-126 24-62 (464)
115 PRK08198 threonine dehydratase 63.9 13 0.00029 32.1 4.7 38 92-129 324-361 (404)
116 cd04922 ACT_AKi-HSDH-ThrA_2 AC 61.8 18 0.0004 22.4 3.9 33 96-128 2-37 (66)
117 PLN02317 arogenate dehydratase 59.6 40 0.00087 30.6 7.0 33 95-127 283-315 (382)
118 TIGR01268 Phe4hydrox_tetr phen 59.3 19 0.0004 33.3 5.0 32 95-126 16-47 (436)
119 cd04890 ACT_AK-like_1 ACT doma 58.6 22 0.00047 22.3 3.9 24 103-126 11-34 (62)
120 cd04892 ACT_AK-like_2 ACT doma 58.4 21 0.00045 21.2 3.6 26 103-128 11-36 (65)
121 PRK06545 prephenate dehydrogen 57.0 18 0.0004 31.0 4.3 39 92-130 287-325 (359)
122 COG2150 Predicted regulator of 56.4 18 0.00039 29.8 4.0 35 94-128 92-128 (167)
123 cd04924 ACT_AK-Arch_2 ACT doma 52.7 32 0.00069 21.2 3.9 34 96-129 2-38 (66)
124 PF03551 PadR: Transcriptional 49.3 66 0.0014 21.3 5.3 39 105-144 30-68 (75)
125 cd04937 ACT_AKi-DapG-BS_2 ACT 48.4 44 0.00096 21.4 4.2 28 97-124 3-33 (64)
126 cd04932 ACT_AKiii-LysC-EC_1 AC 48.1 35 0.00077 23.3 3.8 31 96-126 2-35 (75)
127 cd04921 ACT_AKi-HSDH-ThrA-like 45.9 81 0.0018 20.4 5.6 34 96-129 2-38 (80)
128 PRK13581 D-3-phosphoglycerate 45.7 56 0.0012 29.9 5.8 46 85-130 439-487 (526)
129 COG3283 TyrR Transcriptional r 41.3 30 0.00065 32.6 3.4 36 98-133 3-38 (511)
130 COG4492 PheB ACT domain-contai 41.2 30 0.00066 28.1 3.0 29 97-125 74-102 (150)
131 cd04935 ACT_AKiii-DAPDC_1 ACT 39.9 40 0.00087 23.0 3.1 25 102-126 11-35 (75)
132 PRK08526 threonine dehydratase 39.0 51 0.0011 29.2 4.3 37 92-128 323-359 (403)
133 cd04912 ACT_AKiii-LysC-EC-like 38.2 67 0.0014 21.4 3.9 31 96-126 2-35 (75)
134 COG2061 ACT-domain-containing 38.1 51 0.0011 27.3 3.9 34 98-131 8-41 (170)
135 PRK06635 aspartate kinase; Rev 36.8 59 0.0013 28.0 4.3 34 93-126 338-374 (404)
136 cd04916 ACT_AKiii-YclM-BS_2 AC 36.7 1E+02 0.0022 18.9 5.9 33 97-129 3-38 (66)
137 PF13670 PepSY_2: Peptidase pr 35.6 71 0.0015 21.8 3.8 29 109-137 31-59 (83)
138 cd04923 ACT_AK-LysC-DapG-like_ 34.6 56 0.0012 19.7 2.9 25 103-127 11-35 (63)
139 TIGR00656 asp_kin_monofn aspar 33.6 94 0.002 26.7 5.0 34 92-125 334-370 (401)
140 TIGR02079 THD1 threonine dehyd 32.4 76 0.0016 28.0 4.4 36 92-127 322-357 (409)
141 cd04933 ACT_AK1-AT_1 ACT domai 31.4 66 0.0014 22.5 3.1 27 100-126 9-35 (78)
142 cd07247 SgaA_N_like N-terminal 31.4 1.6E+02 0.0034 19.5 6.2 43 97-145 64-106 (114)
143 PRK06635 aspartate kinase; Rev 31.0 1.2E+02 0.0026 26.1 5.3 35 95-129 262-297 (404)
144 cd04936 ACT_AKii-LysC-BS-like_ 30.1 74 0.0016 19.1 2.9 25 103-127 11-35 (63)
145 cd01423 MGS_CPS_I_III Methylgl 29.0 68 0.0015 22.9 2.9 27 97-124 4-30 (116)
146 cd04907 ACT_ThrD-I_2 Second of 28.7 2E+02 0.0044 19.9 5.6 42 97-139 3-44 (81)
147 PRK08639 threonine dehydratase 27.9 1.1E+02 0.0024 27.0 4.6 36 92-127 333-368 (420)
148 COG0813 DeoD Purine-nucleoside 26.8 1.1E+02 0.0023 26.6 4.2 60 79-143 98-164 (236)
149 PF05088 Bac_GDH: Bacterial NA 25.6 2.7E+02 0.0059 29.9 7.5 56 90-145 484-544 (1528)
150 smart00596 PRE_C2HC PRE_C2HC d 25.1 1.4E+02 0.003 21.3 3.9 31 111-141 3-35 (69)
151 PF02319 E2F_TDP: E2F/DP famil 24.7 61 0.0013 22.1 1.9 17 108-124 45-61 (71)
152 PRK09224 threonine dehydratase 24.4 2.8E+02 0.0061 25.4 6.7 45 93-139 326-370 (504)
153 cd07253 Glo_EDI_BRP_like_2 Thi 24.3 2.1E+02 0.0046 18.7 4.9 37 109-145 79-116 (125)
154 cd07240 ED_TypeI_classII_N N-t 24.0 1.6E+02 0.0035 19.3 3.9 37 107-145 69-105 (117)
155 PF12681 Glyoxalase_2: Glyoxal 23.9 2.1E+02 0.0046 18.5 5.7 37 107-145 65-101 (108)
156 cd07263 Glo_EDI_BRP_like_16 Th 23.6 1.8E+02 0.0039 18.7 4.1 35 109-146 78-112 (119)
157 cd08357 Glo_EDI_BRP_like_18 Th 23.6 1.8E+02 0.0039 19.3 4.1 39 107-145 76-116 (125)
158 TIGR03433 padR_acidobact trans 21.9 2.2E+02 0.0048 20.1 4.5 39 105-144 38-76 (100)
159 TIGR00656 asp_kin_monofn aspar 21.9 1.6E+02 0.0034 25.4 4.4 34 93-126 258-294 (401)
160 PRK08210 aspartate kinase I; R 21.8 2.4E+02 0.0052 24.5 5.5 37 93-129 269-306 (403)
161 PF09904 HTH_43: Winged helix- 21.1 1E+02 0.0022 23.1 2.6 31 108-141 37-67 (90)
162 cd07238 Glo_EDI_BRP_like_5 Thi 20.7 1.8E+02 0.0038 19.3 3.6 35 109-145 68-102 (112)
No 1
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.82 E-value=4.8e-20 Score=128.81 Aligned_cols=51 Identities=25% Similarity=0.383 Sum_probs=49.7
Q ss_pred ceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032116 95 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 145 (147)
Q Consensus 95 aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD~d 145 (147)
+||+||.+.||||||++|+++|+++||+|++|+|+|.|+|++|+|||+|.+
T Consensus 1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~ 51 (72)
T cd04895 1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQL 51 (72)
T ss_pred CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCC
Confidence 699999999999999999999999999999999999999999999999875
No 2
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.75 E-value=2.8e-18 Score=120.92 Aligned_cols=51 Identities=22% Similarity=0.338 Sum_probs=49.7
Q ss_pred ceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032116 95 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 145 (147)
Q Consensus 95 aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD~d 145 (147)
+|||||.+.||||||++|+++|.++||+|..|+|+|.|+++.|+|||+|.+
T Consensus 1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~ 51 (75)
T cd04897 1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKD 51 (75)
T ss_pred CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCC
Confidence 699999999999999999999999999999999999999999999999875
No 3
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.67 E-value=1.3e-16 Score=149.63 Aligned_cols=65 Identities=15% Similarity=0.140 Sum_probs=62.6
Q ss_pred CCCEEEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032116 81 PTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 145 (147)
Q Consensus 81 ~~PrV~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD~d 145 (147)
.+|+|.|||+.|+++|++||.+.||+|||++|+++|.++||+|+.|+|+|.|+++.|+|||+|.+
T Consensus 794 ~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~~ 858 (884)
T PRK05007 794 VPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATAD 858 (884)
T ss_pred CCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcCC
Confidence 45699999999999999999999999999999999999999999999999999999999999864
No 4
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.67 E-value=1.3e-16 Score=149.26 Aligned_cols=65 Identities=20% Similarity=0.224 Sum_probs=62.6
Q ss_pred CCCEEEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032116 81 PTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 145 (147)
Q Consensus 81 ~~PrV~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD~d 145 (147)
.+|+|.|||+.|+++|++||.+.||||||++|+++|.++|++|+.|+|+|.|+++.|+|||+|.+
T Consensus 769 ~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~~ 833 (854)
T PRK01759 769 VKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQ 833 (854)
T ss_pred CCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECCC
Confidence 45699999999999999999999999999999999999999999999999999999999999865
No 5
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.65 E-value=4.2e-16 Score=109.85 Aligned_cols=46 Identities=17% Similarity=0.306 Sum_probs=45.6
Q ss_pred eEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEE--eCCCcceEEEEE
Q 032116 96 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVF--LDSSGKHNKFAI 141 (147)
Q Consensus 96 TIVeV~s~DR~GLLldivqaL~dLgLnI~KA~IS--TdGd~~~DVFyV 141 (147)
||+||.+.||+|||++++++|+++||+|+.|+|+ |.|+++.|+|||
T Consensus 1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv 48 (75)
T cd04896 1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV 48 (75)
T ss_pred CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE
Confidence 7999999999999999999999999999999999 999999999999
No 6
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.50 E-value=7e-14 Score=129.84 Aligned_cols=65 Identities=28% Similarity=0.354 Sum_probs=62.7
Q ss_pred CCCEEEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032116 81 PTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 145 (147)
Q Consensus 81 ~~PrV~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD~d 145 (147)
.+|+|.|||+.++++|+|+|.+.||||||++|+++|.++|++|+.|+|+|.|+++.|+|||++..
T Consensus 765 ~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~ 829 (850)
T TIGR01693 765 VPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLF 829 (850)
T ss_pred CCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCC
Confidence 56799999999999999999999999999999999999999999999999999999999999864
No 7
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.43 E-value=4e-13 Score=126.81 Aligned_cols=65 Identities=23% Similarity=0.252 Sum_probs=62.3
Q ss_pred CCCEEEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032116 81 PTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 145 (147)
Q Consensus 81 ~~PrV~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD~d 145 (147)
-+|+|.|||+.++++|+++|.+.||+|||++|+++|.++||+|..|+|+|.|+++.|+|||+|.+
T Consensus 782 ~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~ 846 (869)
T PRK04374 782 FAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDEH 846 (869)
T ss_pred CCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCC
Confidence 34599999999999999999999999999999999999999999999999999999999999865
No 8
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.43 E-value=4.1e-13 Score=126.69 Aligned_cols=65 Identities=25% Similarity=0.238 Sum_probs=62.5
Q ss_pred CCCEEEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032116 81 PTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 145 (147)
Q Consensus 81 ~~PrV~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD~d 145 (147)
.+|+|.|+|+.+.++|+|+|.+.||+|||++|+++|.++||+|..|+|+|.|++++|+|||+|.+
T Consensus 800 ~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~ 864 (895)
T PRK00275 800 FPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDAD 864 (895)
T ss_pred CCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCC
Confidence 45799999999999999999999999999999999999999999999999999999999999865
No 9
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.41 E-value=6.9e-13 Score=124.84 Aligned_cols=65 Identities=29% Similarity=0.433 Sum_probs=62.3
Q ss_pred CCCEEEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032116 81 PTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 145 (147)
Q Consensus 81 ~~PrV~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD~d 145 (147)
.+|+|.|||+.+.++|+|+|.+.||+|||++|+++|.++|++|..|+|+|.|+++.|+|||+|.+
T Consensus 829 ~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~ 893 (931)
T PRK05092 829 VPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLF 893 (931)
T ss_pred CCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCC
Confidence 35799999999999999999999999999999999999999999999999999999999999854
No 10
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.41 E-value=7.6e-13 Score=89.91 Aligned_cols=50 Identities=26% Similarity=0.292 Sum_probs=48.3
Q ss_pred eEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032116 96 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 145 (147)
Q Consensus 96 TIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD~d 145 (147)
||+||.+.||+|||.+++++|.++||||..|+|.|-|+.++|+|||+|.+
T Consensus 1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~ 50 (74)
T cd04925 1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEE 50 (74)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCc
Confidence 79999999999999999999999999999999999999999999999864
No 11
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.39 E-value=1.6e-12 Score=89.25 Aligned_cols=49 Identities=27% Similarity=0.331 Sum_probs=46.9
Q ss_pred EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEe-CCCcceEEEEEeccc
Q 032116 97 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFL-DSSGKHNKFAITKAY 145 (147)
Q Consensus 97 IVeV~s~DR~GLLldivqaL~dLgLnI~KA~IST-dGd~~~DVFyVTD~d 145 (147)
++||.+.||+|||++++++|.++||+|..|+|+| .++++.|+|||+|.+
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~ 51 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDAR 51 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCC
Confidence 6899999999999999999999999999999996 999999999999865
No 12
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.38 E-value=1.3e-12 Score=121.57 Aligned_cols=65 Identities=31% Similarity=0.363 Sum_probs=62.4
Q ss_pred CCCEEEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032116 81 PTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 145 (147)
Q Consensus 81 ~~PrV~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD~d 145 (147)
.+|+|.+||+.++++|+|+|.+.||+|||++|+++|.++|+||..|+|+|.|++++|+|||+|.+
T Consensus 693 ~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~ 757 (774)
T PRK03381 693 APPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAA 757 (774)
T ss_pred CCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCC
Confidence 45699999999999999999999999999999999999999999999999999999999999875
No 13
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.38 E-value=1.9e-12 Score=86.92 Aligned_cols=51 Identities=29% Similarity=0.373 Sum_probs=47.2
Q ss_pred ceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC-CCcceEEEEEeccc
Q 032116 95 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD-SSGKHNKFAITKAY 145 (147)
Q Consensus 95 aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTd-Gd~~~DVFyVTD~d 145 (147)
++-|+|.+.||+|||++++.+|..+||+|..|+|.|- +++++|+|||+|.+
T Consensus 1 ~~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~ 52 (73)
T cd04900 1 GTEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPD 52 (73)
T ss_pred CEEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCC
Confidence 4678999999999999999999999999999999887 58999999999764
No 14
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=2.5e-12 Score=122.33 Aligned_cols=63 Identities=27% Similarity=0.344 Sum_probs=61.7
Q ss_pred CEEEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032116 83 PKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 145 (147)
Q Consensus 83 PrV~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD~d 145 (147)
|+|.|.|+.+...|++||.+.||+|||.+++++|.|+||+|+.|+|+|.|+++.|+|||||..
T Consensus 779 p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~~ 841 (867)
T COG2844 779 PRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDAD 841 (867)
T ss_pred CceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEeccc
Confidence 799999999999999999999999999999999999999999999999999999999999875
No 15
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.32 E-value=5.5e-12 Score=118.65 Aligned_cols=64 Identities=22% Similarity=0.251 Sum_probs=60.8
Q ss_pred CCCEEEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEecc
Q 032116 81 PTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKA 144 (147)
Q Consensus 81 ~~PrV~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD~ 144 (147)
.+|+|.|+|+.++++|+|+|.+.||+|||++|+++|..+||+|+.|+|+|.|+++.|+|||++.
T Consensus 772 ~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~~ 835 (856)
T PRK03059 772 ITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDGS 835 (856)
T ss_pred CCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcCC
Confidence 3569999999999999999999999999999999999999999999999999999999999754
No 16
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.19 E-value=7.8e-11 Score=109.72 Aligned_cols=65 Identities=25% Similarity=0.246 Sum_probs=61.9
Q ss_pred CCCEEEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEE-eCCCcceEEEEEeccc
Q 032116 81 PTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVF-LDSSGKHNKFAITKAY 145 (147)
Q Consensus 81 ~~PrV~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~IS-TdGd~~~DVFyVTD~d 145 (147)
+.|.|.++|..+..+|.|+|.+.||+|||.+|+.+|..+||+|..|+|. |.|++++|+|||+|.+
T Consensus 654 ~~~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~ 719 (850)
T TIGR01693 654 GGPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLF 719 (850)
T ss_pred CCCEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCC
Confidence 4689999999999999999999999999999999999999999999999 8999999999999875
No 17
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.18 E-value=8.2e-11 Score=110.66 Aligned_cols=65 Identities=15% Similarity=0.128 Sum_probs=62.1
Q ss_pred CCCEEEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEe-CCCcceEEEEEeccc
Q 032116 81 PTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFL-DSSGKHNKFAITKAY 145 (147)
Q Consensus 81 ~~PrV~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~IST-dGd~~~DVFyVTD~d 145 (147)
..|.|.|+|+.+..+|.|.|.+.||+|||+.|+.+|..+||+|..|+|.| .+++++|+|||+|.+
T Consensus 663 ~~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~ 728 (854)
T PRK01759 663 GDLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELN 728 (854)
T ss_pred CCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCC
Confidence 46789999999999999999999999999999999999999999999988 899999999999875
No 18
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.11 E-value=2.7e-10 Score=107.52 Aligned_cols=65 Identities=18% Similarity=0.190 Sum_probs=61.8
Q ss_pred CCCEEEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCC-cceEEEEEeccc
Q 032116 81 PTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS-GKHNKFAITKAY 145 (147)
Q Consensus 81 ~~PrV~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd-~~~DVFyVTD~d 145 (147)
+.|.|.|+|+.+..+|.|+|.+.||+|||..|+.+|..+||+|..|+|.|-++ +++|+|||+|.+
T Consensus 687 ~~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~ 752 (884)
T PRK05007 687 DKPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPD 752 (884)
T ss_pred CCCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCC
Confidence 57899999999999999999999999999999999999999999999998777 899999999875
No 19
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.09 E-value=5.2e-10 Score=75.48 Aligned_cols=50 Identities=28% Similarity=0.385 Sum_probs=47.0
Q ss_pred eEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032116 96 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 145 (147)
Q Consensus 96 TIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD~d 145 (147)
|-+.|...||+|+|++++++|.++|+||..|.|.+.++.++|+|||+|.+
T Consensus 2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~ 51 (72)
T cd04926 2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDAN 51 (72)
T ss_pred eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCC
Confidence 56889999999999999999999999999999999988999999999865
No 20
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.08 E-value=7.2e-10 Score=71.74 Aligned_cols=50 Identities=34% Similarity=0.420 Sum_probs=47.8
Q ss_pred eEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032116 96 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 145 (147)
Q Consensus 96 TIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD~d 145 (147)
|+++|...||+|+|.+++++|.++|++|..+.+.+.++++.|.|||.+.+
T Consensus 1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~ 50 (70)
T cd04899 1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDAD 50 (70)
T ss_pred CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCC
Confidence 78999999999999999999999999999999999999999999998765
No 21
>PRK05092 PII uridylyl-transferase; Provisional
Probab=98.72 E-value=5.6e-08 Score=92.12 Aligned_cols=65 Identities=22% Similarity=0.261 Sum_probs=60.5
Q ss_pred CCCEEEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEe-CCCcceEEEEEeccc
Q 032116 81 PTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFL-DSSGKHNKFAITKAY 145 (147)
Q Consensus 81 ~~PrV~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~IST-dGd~~~DVFyVTD~d 145 (147)
.++.|.|.++.+..+|.|.|.+.||+|||.+|+.+|..+||||..|+|.| .++.++|+|||+|.+
T Consensus 718 ~~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~ 783 (931)
T PRK05092 718 RPLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAF 783 (931)
T ss_pred CCcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCC
Confidence 46789999999999999999999999999999999999999999999988 777899999998764
No 22
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=98.66 E-value=1.6e-07 Score=59.77 Aligned_cols=50 Identities=32% Similarity=0.425 Sum_probs=46.4
Q ss_pred eEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032116 96 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 145 (147)
Q Consensus 96 TIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD~d 145 (147)
|.+.|...||+|+|.+++++|++.|++|..+++.+.+++..+.|+|.+.+
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~ 50 (70)
T cd04873 1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSD 50 (70)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCC
Confidence 46889999999999999999999999999999999888999999998754
No 23
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=98.64 E-value=1.3e-07 Score=89.91 Aligned_cols=64 Identities=20% Similarity=0.240 Sum_probs=57.1
Q ss_pred CCEEEEcCCCC---CCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEE-eCCCcceEEEEEeccc
Q 032116 82 TPKVIIDLDSD---PDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVF-LDSSGKHNKFAITKAY 145 (147)
Q Consensus 82 ~PrV~IDNdss---~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~IS-TdGd~~~DVFyVTD~d 145 (147)
.|.|.+.+... ..+|.|.|.+.||+||+.+|+.+|..+||||..|+|. +..++++|+|+|+|.+
T Consensus 688 ~~~v~~~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~ 755 (895)
T PRK00275 688 GPLVLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDD 755 (895)
T ss_pred CCeEEEEecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCC
Confidence 46677888776 6899999999999999999999999999999999995 5667889999999865
No 24
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.59 E-value=2.3e-07 Score=64.60 Aligned_cols=48 Identities=27% Similarity=0.369 Sum_probs=43.7
Q ss_pred EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEe-CCCcceEEEEEeccc
Q 032116 98 VEITFGDRLGALLDTMNALKNLGLNVVKANVFL-DSSGKHNKFAITKAY 145 (147)
Q Consensus 98 VeV~s~DR~GLLldivqaL~dLgLnI~KA~IST-dGd~~~DVFyVTD~d 145 (147)
|-|...||+|++..++.+|..+||||..|+|.| ..++.+|+|+|+|.+
T Consensus 4 I~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~ 52 (68)
T cd04928 4 ITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWK 52 (68)
T ss_pred EEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCC
Confidence 568889999999999999999999999999996 466789999999875
No 25
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.52 E-value=5.5e-07 Score=56.70 Aligned_cols=49 Identities=22% Similarity=0.253 Sum_probs=43.3
Q ss_pred eEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCC--cceEEEEEecc
Q 032116 96 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS--GKHNKFAITKA 144 (147)
Q Consensus 96 TIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd--~~~DVFyVTD~ 144 (147)
|.|.|...||+|+|.++.++|.++|+||..+++.++++ +.+..+.+.+.
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~ 51 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDE 51 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEG
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCC
Confidence 57889999999999999999999999999999999988 66666666654
No 26
>PRK03381 PII uridylyl-transferase; Provisional
Probab=98.51 E-value=5.1e-07 Score=84.57 Aligned_cols=64 Identities=22% Similarity=0.185 Sum_probs=60.6
Q ss_pred CCCEEEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032116 81 PTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 145 (147)
Q Consensus 81 ~~PrV~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD~d 145 (147)
..|.|.+.++. ...|.|.|...||+||+..|+.+|..+|+||..|.|.|.++++.|+|+|++.+
T Consensus 586 ~~~~v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~ 649 (774)
T PRK03381 586 GGVHVEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRF 649 (774)
T ss_pred CCCEEEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCC
Confidence 67899999888 99999999999999999999999999999999999999888999999999854
No 27
>PRK03059 PII uridylyl-transferase; Provisional
Probab=98.19 E-value=6.7e-06 Score=78.08 Aligned_cols=65 Identities=15% Similarity=0.170 Sum_probs=58.6
Q ss_pred CCCEEEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEE-eCCCcceEEEEEeccc
Q 032116 81 PTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVF-LDSSGKHNKFAITKAY 145 (147)
Q Consensus 81 ~~PrV~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~IS-TdGd~~~DVFyVTD~d 145 (147)
+.|.|.+.+.....+|-|-|.+.||+||+..++.+|..+||||..|.|. +..+.++|+|+|+|.+
T Consensus 664 ~~~~v~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~ 729 (856)
T PRK03059 664 DTPIVRARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPE 729 (856)
T ss_pred CCCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCC
Confidence 3567779898899999999999999999999999999999999999995 4677889999999764
No 28
>PRK04374 PII uridylyl-transferase; Provisional
Probab=98.03 E-value=2.5e-05 Score=74.60 Aligned_cols=64 Identities=20% Similarity=0.166 Sum_probs=55.9
Q ss_pred CCEEEE-cCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEe-CCCcceEEEEEeccc
Q 032116 82 TPKVII-DLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFL-DSSGKHNKFAITKAY 145 (147)
Q Consensus 82 ~PrV~I-DNdss~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~IST-dGd~~~DVFyVTD~d 145 (147)
.|.|.+ +......+|-|-|.+.||+||+..|+.+|..+||||..|+|.| ..+.++|+|+|+|.+
T Consensus 676 ~~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~ 741 (869)
T PRK04374 676 QTLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQD 741 (869)
T ss_pred CCeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCC
Confidence 344554 4466778999999999999999999999999999999999997 677899999999865
No 29
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.80 E-value=3.7e-05 Score=54.77 Aligned_cols=49 Identities=18% Similarity=0.230 Sum_probs=46.4
Q ss_pred eEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEecc
Q 032116 96 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKA 144 (147)
Q Consensus 96 TIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD~ 144 (147)
|+|.|.-.||.||=-|+.+++-+.||+|.|+.++|||.|-.=+|.|.-.
T Consensus 1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~ 49 (69)
T cd04894 1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPR 49 (69)
T ss_pred CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecC
Confidence 6899999999999999999999999999999999999999999999754
No 30
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=97.66 E-value=4e-05 Score=72.14 Aligned_cols=54 Identities=17% Similarity=0.105 Sum_probs=49.8
Q ss_pred cCCCEEEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEec
Q 032116 80 IPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITK 143 (147)
Q Consensus 80 ~~~PrV~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD 143 (147)
..+|+|.... +|+||.+.||+|+|+.++++|- .|..|+|+|-|...+|+||++.
T Consensus 622 ~~~~~~~~~~------~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~~ 675 (693)
T PRK00227 622 PGITATFWHG------NILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALKP 675 (693)
T ss_pred CCCCceEeeC------cEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEecC
Confidence 5677888775 8999999999999999999999 8999999999999999999974
No 31
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=97.61 E-value=0.00027 Score=48.03 Aligned_cols=46 Identities=13% Similarity=0.148 Sum_probs=39.6
Q ss_pred EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEe
Q 032116 97 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAIT 142 (147)
Q Consensus 97 IVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVT 142 (147)
||.|...||||++.+++++|.+.|+||......+-|+++.=.+-|.
T Consensus 4 vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~ 49 (76)
T PF13740_consen 4 VITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVS 49 (76)
T ss_dssp EEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEE
Confidence 7899999999999999999999999999999999999987776653
No 32
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.49 E-value=0.0003 Score=47.29 Aligned_cols=45 Identities=13% Similarity=0.138 Sum_probs=38.7
Q ss_pred EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEE
Q 032116 97 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAI 141 (147)
Q Consensus 97 IVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyV 141 (147)
+|.|...||||++.+++++|.+.|+||....-.+.++.+.=.|.|
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v 45 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILV 45 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEE
Confidence 578999999999999999999999999999877777766555555
No 33
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.39 E-value=0.00081 Score=45.10 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=31.9
Q ss_pred ceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCC
Q 032116 95 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS 132 (147)
Q Consensus 95 aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdG 132 (147)
-+-++|...||+|+|.+|++++.+.|.+|....+....
T Consensus 6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~ 43 (80)
T PF13291_consen 6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNK 43 (80)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--
T ss_pred EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEec
Confidence 35689999999999999999999999999999999954
No 34
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.34 E-value=0.00074 Score=44.94 Aligned_cols=35 Identities=29% Similarity=0.469 Sum_probs=32.2
Q ss_pred EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC
Q 032116 97 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 131 (147)
Q Consensus 97 IVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTd 131 (147)
|+.|...||+|++.++++.|.+.|+||....-.++
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~ 35 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVD 35 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeec
Confidence 58899999999999999999999999999877763
No 35
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=97.32 E-value=0.00055 Score=45.82 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=32.5
Q ss_pred EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC
Q 032116 98 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 131 (147)
Q Consensus 98 VeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTd 131 (147)
++|.+.||.|+|.+|++++++.|.+|....+.++
T Consensus 3 l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~ 36 (74)
T cd04877 3 LEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK 36 (74)
T ss_pred EEEEEEccchHHHHHHHHHHHCCCceEEEEEecC
Confidence 6899999999999999999999999999999886
No 36
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=97.26 E-value=0.00086 Score=45.76 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=36.7
Q ss_pred EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcc
Q 032116 97 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGK 135 (147)
Q Consensus 97 IVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~ 135 (147)
|+.|...||+|+...+++.|.+.|+||........+++|
T Consensus 3 iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F 41 (77)
T cd04893 3 VISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEF 41 (77)
T ss_pred EEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEE
Confidence 688999999999999999999999999999999988876
No 37
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.15 E-value=0.0015 Score=43.36 Aligned_cols=36 Identities=22% Similarity=0.246 Sum_probs=33.9
Q ss_pred EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCC
Q 032116 97 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS 132 (147)
Q Consensus 97 IVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdG 132 (147)
++.|...||+|++.++++.|.+.|+||......+++
T Consensus 1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~ 36 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYS 36 (81)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeec
Confidence 478999999999999999999999999999998887
No 38
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.03 E-value=0.0038 Score=40.66 Aligned_cols=35 Identities=14% Similarity=0.234 Sum_probs=32.0
Q ss_pred EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCC
Q 032116 98 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS 132 (147)
Q Consensus 98 VeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdG 132 (147)
++|...||+|+|.++++++.+.|.||...+.....
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~ 36 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQG 36 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEec
Confidence 68999999999999999999999999998887753
No 39
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=96.95 E-value=0.0063 Score=33.98 Aligned_cols=46 Identities=20% Similarity=0.372 Sum_probs=36.5
Q ss_pred EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCC-CcceEEEEEec
Q 032116 98 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS-SGKHNKFAITK 143 (147)
Q Consensus 98 VeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdG-d~~~DVFyVTD 143 (147)
+.|...|++|+|.++.++|.+.|++|.+....... .+....++.++
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 47 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVD 47 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEEe
Confidence 46788899999999999999999999999987754 34455554443
No 40
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.94 E-value=0.0046 Score=38.57 Aligned_cols=34 Identities=18% Similarity=0.339 Sum_probs=29.7
Q ss_pred EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC
Q 032116 98 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 131 (147)
Q Consensus 98 VeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTd 131 (147)
+.|...||+|+|.+++++|.+.|.+|..-.....
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~ 34 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRA 34 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEec
Confidence 3577889999999999999999999997776654
No 41
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.92 E-value=0.0059 Score=38.62 Aligned_cols=45 Identities=16% Similarity=0.189 Sum_probs=35.5
Q ss_pred EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCC-cceEEEEEe
Q 032116 98 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS-GKHNKFAIT 142 (147)
Q Consensus 98 VeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd-~~~DVFyVT 142 (147)
+.|...||+|+|.+++++|.+.|.+|.+.......+ .......++
T Consensus 3 l~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~ 48 (79)
T cd04881 3 LRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVT 48 (79)
T ss_pred EEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEE
Confidence 678999999999999999999999999998766533 333343434
No 42
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=96.88 E-value=0.005 Score=38.07 Aligned_cols=44 Identities=16% Similarity=0.099 Sum_probs=36.1
Q ss_pred EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCC--CcceEEEEE
Q 032116 98 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS--SGKHNKFAI 141 (147)
Q Consensus 98 VeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdG--d~~~DVFyV 141 (147)
+.|...|++|+|.+++++|.+.|++|....+...+ +...=.|.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v 47 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV 47 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence 56889999999999999999999999999998875 333334444
No 43
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=96.86 E-value=0.0084 Score=37.28 Aligned_cols=46 Identities=13% Similarity=0.156 Sum_probs=37.1
Q ss_pred EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC-CCcceEEEEEec
Q 032116 98 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLD-SSGKHNKFAITK 143 (147)
Q Consensus 98 VeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTd-Gd~~~DVFyVTD 143 (147)
+.|...|++|+|.++++.|.+.|.+|.+...... ++......+.++
T Consensus 3 l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 49 (72)
T cd04878 3 LSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVE 49 (72)
T ss_pred EEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEE
Confidence 6788999999999999999999999999998876 444444444443
No 44
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.84 E-value=0.0026 Score=43.80 Aligned_cols=42 Identities=14% Similarity=0.196 Sum_probs=36.7
Q ss_pred EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEE
Q 032116 97 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNK 138 (147)
Q Consensus 97 IVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DV 138 (147)
++.+...||+|++.++++.|.+.|+||....-.+.++.+.=.
T Consensus 3 vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~ 44 (88)
T cd04872 3 VITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMI 44 (88)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEE
Confidence 789999999999999999999999999999888876654333
No 45
>PRK00194 hypothetical protein; Validated
Probab=96.70 E-value=0.0037 Score=42.88 Aligned_cols=40 Identities=15% Similarity=0.247 Sum_probs=35.1
Q ss_pred eEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcc
Q 032116 96 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGK 135 (147)
Q Consensus 96 TIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~ 135 (147)
-++.|...||+|++.++++.|.+.|+||.-..-.+.++.+
T Consensus 4 ~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~ 43 (90)
T PRK00194 4 AIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYF 43 (90)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCee
Confidence 4889999999999999999999999999987777766544
No 46
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.0084 Score=58.57 Aligned_cols=66 Identities=24% Similarity=0.343 Sum_probs=60.1
Q ss_pred cCCCEEEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCc-ceEEEEEeccc
Q 032116 80 IPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSG-KHNKFAITKAY 145 (147)
Q Consensus 80 ~~~PrV~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~-~~DVFyVTD~d 145 (147)
-..|-|.+-+......|=|-|.+.|+|.|+..++.++...|+||+.|.|.|--+. .+|+|+|+|.+
T Consensus 669 ~~~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~ 735 (867)
T COG2844 669 LGKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPD 735 (867)
T ss_pred ccCcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCC
Confidence 3567788888888899999999999999999999999999999999999997776 89999999765
No 47
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=96.50 E-value=0.014 Score=36.54 Aligned_cols=46 Identities=11% Similarity=0.196 Sum_probs=38.5
Q ss_pred EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCC-CcceEEEEEec
Q 032116 98 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS-SGKHNKFAITK 143 (147)
Q Consensus 98 VeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdG-d~~~DVFyVTD 143 (147)
++|.-.||+|.|.++.++|.+.|.||...++...+ +..+=.|-+-+
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~ 47 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD 47 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence 46788999999999999999999999999988755 66666666544
No 48
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.49 E-value=0.021 Score=35.70 Aligned_cols=37 Identities=22% Similarity=0.354 Sum_probs=32.8
Q ss_pred EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCC
Q 032116 97 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS 133 (147)
Q Consensus 97 IVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd 133 (147)
.+.|...|++|.|.++.+.|.+.|++|.+.....+.+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~ 38 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIERE 38 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCC
Confidence 4678899999999999999999999999988877643
No 49
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=96.49 E-value=0.018 Score=34.06 Aligned_cols=36 Identities=22% Similarity=0.327 Sum_probs=32.2
Q ss_pred EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCC
Q 032116 98 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS 133 (147)
Q Consensus 98 VeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd 133 (147)
+.|...|++|.|.++.+.|.+.|++|.+..+...++
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~ 36 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDD 36 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCC
Confidence 467889999999999999999999999999887663
No 50
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.48 E-value=0.02 Score=35.60 Aligned_cols=33 Identities=18% Similarity=0.256 Sum_probs=30.2
Q ss_pred EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEe
Q 032116 98 VEITFGDRLGALLDTMNALKNLGLNVVKANVFL 130 (147)
Q Consensus 98 VeV~s~DR~GLLldivqaL~dLgLnI~KA~IST 130 (147)
+.+...||+|.|.++.+.|.+.|.+|.+.....
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~ 34 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSR 34 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEe
Confidence 467889999999999999999999999888776
No 51
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=96.41 E-value=0.011 Score=38.65 Aligned_cols=38 Identities=16% Similarity=0.214 Sum_probs=34.1
Q ss_pred EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCc
Q 032116 97 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSG 134 (147)
Q Consensus 97 IVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~ 134 (147)
-+.|.-.|++|.|.+++++|.+-|+||...++...++.
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~ 40 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF 40 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC
Confidence 36788899999999999999999999999999887663
No 52
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.33 E-value=0.013 Score=36.67 Aligned_cols=36 Identities=19% Similarity=0.460 Sum_probs=32.0
Q ss_pred EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCC
Q 032116 97 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS 132 (147)
Q Consensus 97 IVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdG 132 (147)
++.|.-.||+|.|.++.++|.+.|.||...+....+
T Consensus 1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~ 36 (65)
T cd04882 1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEK 36 (65)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccC
Confidence 467888999999999999999999999988876654
No 53
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.10 E-value=0.031 Score=36.24 Aligned_cols=34 Identities=21% Similarity=0.324 Sum_probs=30.7
Q ss_pred EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC
Q 032116 98 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 131 (147)
Q Consensus 98 VeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTd 131 (147)
++|...||+|+|.+++++|++.|.+|..-..+++
T Consensus 3 l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~ 36 (76)
T cd04888 3 LSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIP 36 (76)
T ss_pred EEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCC
Confidence 6789999999999999999999999998877554
No 54
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=95.82 E-value=0.011 Score=47.67 Aligned_cols=48 Identities=10% Similarity=0.077 Sum_probs=42.0
Q ss_pred CCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEE
Q 032116 92 DPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKF 139 (147)
Q Consensus 92 s~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVF 139 (147)
..+.-||.|...||+|+...++++|.+.|+||.-...+.-|+.|.=.+
T Consensus 5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~ 52 (190)
T PRK11589 5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIM 52 (190)
T ss_pred cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEE
Confidence 357789999999999999999999999999999999888888764443
No 55
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=95.70 E-value=0.021 Score=46.15 Aligned_cols=45 Identities=7% Similarity=0.074 Sum_probs=36.8
Q ss_pred eEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCC--cceEEEE
Q 032116 96 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS--GKHNKFA 140 (147)
Q Consensus 96 TIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd--~~~DVFy 140 (147)
=.|+|.+.||||++++++++|.+.|+||..=.-.+.+. +--+.|.
T Consensus 96 ~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~ 142 (190)
T PRK11589 96 VWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLH 142 (190)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEE
Confidence 37899999999999999999999999999877666664 4444454
No 56
>PRK08577 hypothetical protein; Provisional
Probab=95.65 E-value=0.13 Score=38.42 Aligned_cols=41 Identities=17% Similarity=0.234 Sum_probs=35.8
Q ss_pred CCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCC
Q 032116 92 DPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS 132 (147)
Q Consensus 92 s~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdG 132 (147)
.....-+.|...||+|+|.+++++|.+.|.+|......+..
T Consensus 53 ~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~ 93 (136)
T PRK08577 53 GKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELK 93 (136)
T ss_pred CccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEec
Confidence 33477899999999999999999999999999988877754
No 57
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.51 E-value=0.067 Score=34.49 Aligned_cols=34 Identities=12% Similarity=0.284 Sum_probs=30.6
Q ss_pred EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC
Q 032116 98 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 131 (147)
Q Consensus 98 VeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTd 131 (147)
+.|.-.||+|.|.++.+.|.+.|++|...+....
T Consensus 4 ~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~ 37 (69)
T cd04909 4 LYVDVPDEPGVIAEVTQILGDAGISIKNIEILEI 37 (69)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEe
Confidence 5678889999999999999999999998887764
No 58
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.41 E-value=0.084 Score=34.71 Aligned_cols=34 Identities=12% Similarity=0.323 Sum_probs=29.8
Q ss_pred EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC
Q 032116 98 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 131 (147)
Q Consensus 98 VeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTd 131 (147)
+.|.-.||||.|.++++.|++.|.||..-.....
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~ 35 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE 35 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence 4677899999999999999999999988766654
No 59
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=95.27 E-value=0.15 Score=34.40 Aligned_cols=46 Identities=24% Similarity=0.296 Sum_probs=33.9
Q ss_pred eEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCC-cceEEEEE
Q 032116 96 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS-GKHNKFAI 141 (147)
Q Consensus 96 TIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd-~~~DVFyV 141 (147)
|.+.+.-.|++|.|.++.+.|++.|+||.+-...-.++ ...=.|||
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~v 48 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFI 48 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEE
Confidence 34566778999999999999999999998776544432 22335666
No 60
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=95.21 E-value=0.054 Score=45.83 Aligned_cols=39 Identities=26% Similarity=0.411 Sum_probs=35.2
Q ss_pred ceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEe--CCC
Q 032116 95 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFL--DSS 133 (147)
Q Consensus 95 aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~IST--dGd 133 (147)
.-+|.|...||+|+..+++++|.++|+||....-.. .++
T Consensus 6 ~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g 46 (286)
T PRK06027 6 RYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETG 46 (286)
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCC
Confidence 457899999999999999999999999999998888 444
No 61
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=94.63 E-value=0.1 Score=33.29 Aligned_cols=32 Identities=22% Similarity=0.206 Sum_probs=28.7
Q ss_pred EEEeCCcccHHHHHHHHHHhcCceEEEEEEEe
Q 032116 99 EITFGDRLGALLDTMNALKNLGLNVVKANVFL 130 (147)
Q Consensus 99 eV~s~DR~GLLldivqaL~dLgLnI~KA~IST 130 (147)
-|...|++|.|.++.+.|.+.|+||..-++..
T Consensus 3 ~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~ 34 (73)
T cd04902 3 VVRNTDRPGVIGKVGTILGEAGINIAGMQVGR 34 (73)
T ss_pred EEEeCCCCCHHHHHHHHHHHcCcChhheEeec
Confidence 46789999999999999999999998887755
No 62
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.54 E-value=0.29 Score=31.44 Aligned_cols=36 Identities=31% Similarity=0.502 Sum_probs=31.2
Q ss_pred eEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC
Q 032116 96 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 131 (147)
Q Consensus 96 TIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTd 131 (147)
+-+.|.-.|++|.|..+.+.|.+.|.+|.+.+..-.
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~ 37 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPS 37 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEecc
Confidence 346788899999999999999999999998876544
No 63
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=94.50 E-value=0.028 Score=35.79 Aligned_cols=36 Identities=11% Similarity=-0.000 Sum_probs=30.6
Q ss_pred EEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCc
Q 032116 99 EITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSG 134 (147)
Q Consensus 99 eV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~ 134 (147)
-+...||+|+|.+++++|.+.|.||.+.+..++++.
T Consensus 3 ~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~ 38 (69)
T cd04901 3 LHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEI 38 (69)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCE
Confidence 357899999999999999999999988877765543
No 64
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=94.36 E-value=0.062 Score=40.00 Aligned_cols=30 Identities=20% Similarity=0.439 Sum_probs=28.1
Q ss_pred eEEEEEeCCcccHHHHHHHHHHhcCceEEE
Q 032116 96 TIVEITFGDRLGALLDTMNALKNLGLNVVK 125 (147)
Q Consensus 96 TIVeV~s~DR~GLLldivqaL~dLgLnI~K 125 (147)
-||.|...||+|+-..+.++|.++|.||.-
T Consensus 4 avITV~GkDr~GIva~is~vLAe~~vNIld 33 (90)
T COG3830 4 AVITVIGKDRVGIVAAVSRVLAEHGVNILD 33 (90)
T ss_pred EEEEEEcCCCCchhHHHHHHHHHcCCcEEE
Confidence 589999999999999999999999999974
No 65
>PRK07334 threonine dehydratase; Provisional
Probab=93.66 E-value=0.23 Score=43.17 Aligned_cols=36 Identities=19% Similarity=0.263 Sum_probs=33.8
Q ss_pred eEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC
Q 032116 96 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 131 (147)
Q Consensus 96 TIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTd 131 (147)
+-++|...||+|+|.+|+++|++.+.||.+....++
T Consensus 327 v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~ 362 (403)
T PRK07334 327 ARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRL 362 (403)
T ss_pred EEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEec
Confidence 679999999999999999999999999999998865
No 66
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=93.33 E-value=0.16 Score=34.36 Aligned_cols=29 Identities=17% Similarity=0.481 Sum_probs=24.9
Q ss_pred EEEEeCCcccHHHHHHHHHHhcCceEEEE
Q 032116 98 VEITFGDRLGALLDTMNALKNLGLNVVKA 126 (147)
Q Consensus 98 VeV~s~DR~GLLldivqaL~dLgLnI~KA 126 (147)
+-+.-.|++|.|+++.+.|++.|+|+.+=
T Consensus 3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~I 31 (74)
T cd04904 3 LIFSLKEEVGALARALKLFEEFGVNLTHI 31 (74)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcEEEE
Confidence 44555889999999999999999999864
No 67
>PRK04435 hypothetical protein; Provisional
Probab=93.25 E-value=0.42 Score=36.82 Aligned_cols=48 Identities=19% Similarity=0.237 Sum_probs=41.1
Q ss_pred EEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCC
Q 032116 85 VIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS 132 (147)
Q Consensus 85 V~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdG 132 (147)
.-++.....+-.-+.+...||+|+|.++.++|.+.|.||..-..+...
T Consensus 59 f~~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~ 106 (147)
T PRK04435 59 FPFDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPL 106 (147)
T ss_pred ECccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCC
Confidence 345666788889999999999999999999999999999987765543
No 68
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=93.21 E-value=0.5 Score=37.39 Aligned_cols=36 Identities=17% Similarity=0.219 Sum_probs=32.4
Q ss_pred EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCC
Q 032116 97 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS 132 (147)
Q Consensus 97 IVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdG 132 (147)
++.|...|++|.|.+++..|++.|+||..-.+.-.+
T Consensus 3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~ 38 (157)
T TIGR00119 3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTE 38 (157)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecC
Confidence 578899999999999999999999999888777655
No 69
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=93.12 E-value=0.26 Score=41.86 Aligned_cols=34 Identities=12% Similarity=0.231 Sum_probs=31.0
Q ss_pred eEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEE
Q 032116 96 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVF 129 (147)
Q Consensus 96 TIVeV~s~DR~GLLldivqaL~dLgLnI~KA~IS 129 (147)
-+|.|...||+|+..++++.|.++|+||....-.
T Consensus 8 ~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~ 41 (286)
T PRK13011 8 FVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSF 41 (286)
T ss_pred EEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeee
Confidence 4689999999999999999999999999977665
No 70
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=93.09 E-value=0.2 Score=42.73 Aligned_cols=34 Identities=15% Similarity=0.226 Sum_probs=31.4
Q ss_pred eEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEE
Q 032116 96 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVF 129 (147)
Q Consensus 96 TIVeV~s~DR~GLLldivqaL~dLgLnI~KA~IS 129 (147)
-|+.|...||+|+...+++.|.+.|+||.-..=.
T Consensus 10 ~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~ 43 (289)
T PRK13010 10 YVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQF 43 (289)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHCCCCEEecccc
Confidence 4899999999999999999999999999987664
No 71
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=92.79 E-value=0.25 Score=47.09 Aligned_cols=42 Identities=17% Similarity=0.163 Sum_probs=37.2
Q ss_pred CCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCc
Q 032116 93 PDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSG 134 (147)
Q Consensus 93 ~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~ 134 (147)
..-+-++|...||.|+|.+|+++|.+.|.||....+.++.+.
T Consensus 624 ~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~ 665 (702)
T PRK11092 624 EFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGR 665 (702)
T ss_pred eeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCC
Confidence 345678999999999999999999999999999999887643
No 72
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=92.60 E-value=0.36 Score=46.49 Aligned_cols=55 Identities=25% Similarity=0.158 Sum_probs=44.3
Q ss_pred EEEcCC-CCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEE
Q 032116 85 VIIDLD-SDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKF 139 (147)
Q Consensus 85 V~IDNd-ss~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVF 139 (147)
|.-|.+ +...-.=++|.+.||.|+|-+++++|.+.+.||.+....++.+.+.+..
T Consensus 616 v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~ 671 (701)
T COG0317 616 VSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQ 671 (701)
T ss_pred EEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEE
Confidence 444454 3456677899999999999999999999999999999988866554443
No 73
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=92.56 E-value=0.34 Score=41.18 Aligned_cols=35 Identities=17% Similarity=0.303 Sum_probs=32.2
Q ss_pred EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC
Q 032116 97 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 131 (147)
Q Consensus 97 IVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTd 131 (147)
|+.|...||+|+...+++.|.+.|+||.-..-..+
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~ 36 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTD 36 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEc
Confidence 68899999999999999999999999998887664
No 74
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.19 E-value=0.41 Score=34.51 Aligned_cols=54 Identities=11% Similarity=0.202 Sum_probs=37.0
Q ss_pred cCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC-CCcceEEEEE
Q 032116 88 DLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD-SSGKHNKFAI 141 (147)
Q Consensus 88 DNdss~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTd-Gd~~~DVFyV 141 (147)
++......|-+-+.-.|++|.|+++.+.|++.|+|+.+=.=--- +....=.|||
T Consensus 7 ~~~~~~~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfV 61 (90)
T cd04931 7 ENSNKNGVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFI 61 (90)
T ss_pred cccCCCCcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEE
Confidence 44444455677777799999999999999999999987533221 1222345666
No 75
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=92.17 E-value=0.55 Score=37.85 Aligned_cols=34 Identities=18% Similarity=0.201 Sum_probs=31.7
Q ss_pred EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEe
Q 032116 97 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFL 130 (147)
Q Consensus 97 IVeV~s~DR~GLLldivqaL~dLgLnI~KA~IST 130 (147)
++.|...||||+|..++..|...|+||..=.+..
T Consensus 4 ~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~ 37 (174)
T CHL00100 4 TLSVLVEDESGVLTRIAGLFARRGFNIESLAVGP 37 (174)
T ss_pred EEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeE
Confidence 5889999999999999999999999999988865
No 76
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=92.00 E-value=0.77 Score=44.41 Aligned_cols=39 Identities=31% Similarity=0.328 Sum_probs=35.6
Q ss_pred CceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCC
Q 032116 94 DATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS 132 (147)
Q Consensus 94 ~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdG 132 (147)
.-.-++|.+.||+|+|.+|+++|++.+.||....+.++.
T Consensus 665 ~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~ 703 (743)
T PRK10872 665 YSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDT 703 (743)
T ss_pred eEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcC
Confidence 456789999999999999999999999999999998864
No 77
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=91.58 E-value=1 Score=35.87 Aligned_cols=36 Identities=14% Similarity=0.158 Sum_probs=31.7
Q ss_pred EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCC
Q 032116 97 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS 132 (147)
Q Consensus 97 IVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdG 132 (147)
++.|...|++|.|.+++..|++.|.||..-.+.-..
T Consensus 4 ~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te 39 (161)
T PRK11895 4 TLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTE 39 (161)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecC
Confidence 578899999999999999999999999887776544
No 78
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=91.29 E-value=0.19 Score=41.37 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=27.5
Q ss_pred eEEEEEeCCcccHHHHHHHHHHhcCceEEE
Q 032116 96 TIVEITFGDRLGALLDTMNALKNLGLNVVK 125 (147)
Q Consensus 96 TIVeV~s~DR~GLLldivqaL~dLgLnI~K 125 (147)
-.|+|.+.||+|++-++++.|..+|.+|..
T Consensus 93 v~v~v~a~DrpgIv~~~T~lf~~~~inie~ 122 (176)
T COG2716 93 VWVYVDANDRPGIVEEFTALFDGHGINIEN 122 (176)
T ss_pred EEEEEEecCCccHHHHHHHHHHhcCCchhh
Confidence 468999999999999999999999999863
No 79
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=91.08 E-value=1.6 Score=28.81 Aligned_cols=28 Identities=21% Similarity=0.491 Sum_probs=24.4
Q ss_pred EEeCCcccHHHHHHHHHHhcCceEEEEE
Q 032116 100 ITFGDRLGALLDTMNALKNLGLNVVKAN 127 (147)
Q Consensus 100 V~s~DR~GLLldivqaL~dLgLnI~KA~ 127 (147)
+.-.|++|.|.++.++|++.|+||.+-.
T Consensus 4 ~~l~d~pG~L~~vL~~f~~~~vni~~I~ 31 (75)
T cd04880 4 FSLKNKPGALAKALKVFAERGINLTKIE 31 (75)
T ss_pred EEeCCcCCHHHHHHHHHHHCCCCEEEEE
Confidence 3446899999999999999999998873
No 80
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=90.56 E-value=0.99 Score=42.76 Aligned_cols=43 Identities=21% Similarity=0.130 Sum_probs=37.6
Q ss_pred CCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcc
Q 032116 93 PDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGK 135 (147)
Q Consensus 93 ~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~ 135 (147)
..-+-++|...||+|+|.+|+++|.+.|.||.+..+.++.+..
T Consensus 608 ~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~ 650 (683)
T TIGR00691 608 RFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKRE 650 (683)
T ss_pred eeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCE
Confidence 3456789999999999999999999999999999998875433
No 81
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=89.88 E-value=0.99 Score=43.18 Aligned_cols=45 Identities=16% Similarity=0.352 Sum_probs=39.5
Q ss_pred EEEEEe-CCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEe
Q 032116 97 IVEITF-GDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAIT 142 (147)
Q Consensus 97 IVeV~s-~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVT 142 (147)
.|.|.. +|++|+|..+..+|...|++|+.|.+.++|.+ +..|-|.
T Consensus 548 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~~~~~-~~~~~v~ 593 (693)
T PRK00227 548 FFTVIWHGDYPRELVRVLALIAAKGWNILSARMVANGPW-SAEFDVR 593 (693)
T ss_pred eEEEEecCCcccHHHHHHHHHHhcCceeeEeEEecCCce-EEEEEEe
Confidence 556666 99999999999999999999999999996665 6889875
No 82
>PRK08818 prephenate dehydrogenase; Provisional
Probab=89.61 E-value=1.1 Score=39.62 Aligned_cols=47 Identities=17% Similarity=0.327 Sum_probs=37.3
Q ss_pred CceEEEEEeC-CcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEE
Q 032116 94 DATIVEITFG-DRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAI 141 (147)
Q Consensus 94 ~aTIVeV~s~-DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyV 141 (147)
..+-+-++-. |+||.|+++.+.|.+.|+||.+=.+ .......-.|||
T Consensus 294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~f~i 341 (370)
T PRK08818 294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELHFRI 341 (370)
T ss_pred cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEEEEE
Confidence 4555666665 9999999999999999999999988 444444555887
No 83
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.91 E-value=0.81 Score=31.70 Aligned_cols=31 Identities=26% Similarity=0.538 Sum_probs=25.5
Q ss_pred EEEEeCCcccHHHHHHHHHHhcCceEEEEEE
Q 032116 98 VEITFGDRLGALLDTMNALKNLGLNVVKANV 128 (147)
Q Consensus 98 VeV~s~DR~GLLldivqaL~dLgLnI~KA~I 128 (147)
+-+.-.|++|.|+++.+.|++.|+|+.+=.=
T Consensus 3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeS 33 (74)
T cd04929 3 VIFSLKNEVGGLAKALKLFQELGINVVHIES 33 (74)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEe
Confidence 3344579999999999999999999987543
No 84
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=88.69 E-value=2.3 Score=30.26 Aligned_cols=37 Identities=11% Similarity=0.135 Sum_probs=32.2
Q ss_pred EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCC
Q 032116 97 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS 133 (147)
Q Consensus 97 IVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd 133 (147)
.+.+...|++|.|..++.+|..-|.||.+=.+.--.+
T Consensus 4 tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~ 40 (76)
T PRK06737 4 TFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDT 40 (76)
T ss_pred EEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCC
Confidence 4688999999999999999999999999888874333
No 85
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=88.55 E-value=2.5 Score=31.63 Aligned_cols=50 Identities=12% Similarity=0.183 Sum_probs=37.9
Q ss_pred CCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEE
Q 032116 90 DSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFA 140 (147)
Q Consensus 90 dss~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFy 140 (147)
.+....| +.|...|++|.|..++..|..-|.||++=.+.--++.-+-.+.
T Consensus 4 ~~~~~~t-isvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmt 53 (96)
T PRK08178 4 TTHDNVI-LELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIW 53 (96)
T ss_pred CCCCCEE-EEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEE
Confidence 3444444 7999999999999999999999999998877654443333333
No 86
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=87.88 E-value=2.2 Score=31.29 Aligned_cols=42 Identities=17% Similarity=0.215 Sum_probs=34.7
Q ss_pred EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEE
Q 032116 97 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNK 138 (147)
Q Consensus 97 IVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DV 138 (147)
++.|...|++|.|..++..|..-|+||.+=.++--.+.-+-.
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSR 45 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISN 45 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceE
Confidence 578899999999999999999999999998887544433333
No 87
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.35 E-value=2.3 Score=27.94 Aligned_cols=33 Identities=24% Similarity=0.271 Sum_probs=27.3
Q ss_pred EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC
Q 032116 98 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 131 (147)
Q Consensus 98 VeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTd 131 (147)
+.|.-.||||.|..++++|.. |.||..-+-.-.
T Consensus 1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~ 33 (68)
T cd04885 1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRNQ 33 (68)
T ss_pred CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcC
Confidence 357889999999999999999 999986555443
No 88
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.05 E-value=3.1 Score=24.76 Aligned_cols=28 Identities=25% Similarity=0.252 Sum_probs=24.5
Q ss_pred eCCcccHHHHHHHHHHhcCceEEEEEEE
Q 032116 102 FGDRLGALLDTMNALKNLGLNVVKANVF 129 (147)
Q Consensus 102 s~DR~GLLldivqaL~dLgLnI~KA~IS 129 (147)
..|++|.+.++.++|.+.|++|..-+..
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~ 35 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQS 35 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEEc
Confidence 4788999999999999999999876654
No 89
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=86.18 E-value=0.34 Score=39.91 Aligned_cols=48 Identities=13% Similarity=0.077 Sum_probs=43.1
Q ss_pred CCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEE
Q 032116 92 DPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKF 139 (147)
Q Consensus 92 s~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVF 139 (147)
..+|=||.+.+.||||+...++++..+-|+|+..+++++.|+.|.=+-
T Consensus 2 ~~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~ 49 (176)
T COG2716 2 MEHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIM 49 (176)
T ss_pred CccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEE
Confidence 357789999999999999999999999999999999999999875443
No 90
>PRK11899 prephenate dehydratase; Provisional
Probab=85.86 E-value=4.3 Score=34.66 Aligned_cols=47 Identities=17% Similarity=0.227 Sum_probs=35.5
Q ss_pred ceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC-CCcceEEEEE
Q 032116 95 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD-SSGKHNKFAI 141 (147)
Q Consensus 95 aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTd-Gd~~~DVFyV 141 (147)
-|-+-+.-.||+|.|+++.++|++.|+|+.|=.=-=. ++-..=.|||
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~i 241 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYA 241 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEE
Confidence 4666677789999999999999999999987543322 3333557887
No 91
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=85.73 E-value=4 Score=28.13 Aligned_cols=27 Identities=15% Similarity=0.315 Sum_probs=23.3
Q ss_pred EEEEEeCCcccHHHHHHHHHHhcCceEEE
Q 032116 97 IVEITFGDRLGALLDTMNALKNLGLNVVK 125 (147)
Q Consensus 97 IVeV~s~DR~GLLldivqaL~dLgLnI~K 125 (147)
++.|.-.||||-|..+.++|. |-||..
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~ 29 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITE 29 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeE
Confidence 688999999999999999999 556553
No 92
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=85.63 E-value=2.2 Score=32.02 Aligned_cols=33 Identities=3% Similarity=0.182 Sum_probs=27.7
Q ss_pred ceEEEEEeCCcccHHHHHHHHHHhcCceEEEEE
Q 032116 95 ATIVEITFGDRLGALLDTMNALKNLGLNVVKAN 127 (147)
Q Consensus 95 aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ 127 (147)
-|-+-+.-.|++|.|+++.+.|++.|+|+.+=.
T Consensus 41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IE 73 (115)
T cd04930 41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLE 73 (115)
T ss_pred cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEE
Confidence 355666669999999999999999999998643
No 93
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=84.82 E-value=3 Score=33.42 Aligned_cols=40 Identities=18% Similarity=0.279 Sum_probs=34.9
Q ss_pred EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcce
Q 032116 97 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKH 136 (147)
Q Consensus 97 IVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~ 136 (147)
|+-|.-.|+||-|..|..+|.|.|+|+.-.|-...-.++.
T Consensus 71 VlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KA 110 (142)
T COG4747 71 VLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKA 110 (142)
T ss_pred EEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceE
Confidence 6788899999999999999999999999988877665543
No 94
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=83.76 E-value=3.5 Score=25.66 Aligned_cols=27 Identities=22% Similarity=0.213 Sum_probs=23.3
Q ss_pred eCCcccHHHHHHHHHHhcCceEEEEEE
Q 032116 102 FGDRLGALLDTMNALKNLGLNVVKANV 128 (147)
Q Consensus 102 s~DR~GLLldivqaL~dLgLnI~KA~I 128 (147)
-.|++|.+..+.++|.+.|++|.--+-
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~ 35 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIVQ 35 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEEe
Confidence 368899999999999999999985543
No 95
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=82.64 E-value=0.98 Score=31.60 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=26.1
Q ss_pred EEEEEeCC-cccHHHHHHHHHHhcCceEEE
Q 032116 97 IVEITFGD-RLGALLDTMNALKNLGLNVVK 125 (147)
Q Consensus 97 IVeV~s~D-R~GLLldivqaL~dLgLnI~K 125 (147)
||.|-..| +.|++..++++|.++|+||..
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~ 30 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDR 30 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHHH
Confidence 56788899 999999999999999999863
No 96
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=82.07 E-value=3.4 Score=27.39 Aligned_cols=36 Identities=19% Similarity=0.273 Sum_probs=29.1
Q ss_pred CCCceEEEEEeC----CcccHHHHHHHHHHhcCceEEEEE
Q 032116 92 DPDATIVEITFG----DRLGALLDTMNALKNLGLNVVKAN 127 (147)
Q Consensus 92 s~~aTIVeV~s~----DR~GLLldivqaL~dLgLnI~KA~ 127 (147)
.++...+.|... |.+|++..+.++|.+-|++|.--.
T Consensus 3 ~~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 3 EEDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp ESEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred cCCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence 345677788777 799999999999999999996544
No 97
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=81.21 E-value=5.7 Score=34.52 Aligned_cols=48 Identities=19% Similarity=0.230 Sum_probs=36.3
Q ss_pred CceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCC-cceEEEEE
Q 032116 94 DATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS-GKHNKFAI 141 (147)
Q Consensus 94 ~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd-~~~DVFyV 141 (147)
.-|.+-+.-.|+||.|+++..+|+..|+|..|=+--=-+. -..=.|||
T Consensus 193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~i 241 (279)
T COG0077 193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFI 241 (279)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEE
Confidence 4788888888999999999999999999998754332332 23445665
No 98
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=81.09 E-value=7.8 Score=27.43 Aligned_cols=34 Identities=18% Similarity=0.189 Sum_probs=31.4
Q ss_pred EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEe
Q 032116 97 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFL 130 (147)
Q Consensus 97 IVeV~s~DR~GLLldivqaL~dLgLnI~KA~IST 130 (147)
.+.+...|++|.|..++.++..-|.||.+=.+.-
T Consensus 5 ~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~ 38 (76)
T PRK11152 5 QLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQ 38 (76)
T ss_pred EEEEEEECCccHHHHHHHHHhcCCeeeeeEEeee
Confidence 5788999999999999999999999999988876
No 99
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=80.79 E-value=6.8 Score=26.15 Aligned_cols=30 Identities=17% Similarity=0.234 Sum_probs=25.6
Q ss_pred CcccHHHHHHHHHHhcCceEEEEEEEeCCC
Q 032116 104 DRLGALLDTMNALKNLGLNVVKANVFLDSS 133 (147)
Q Consensus 104 DR~GLLldivqaL~dLgLnI~KA~ISTdGd 133 (147)
|++|.|..++.+|..-|.||+.=.++...+
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~ 30 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTED 30 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SS
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCC
Confidence 789999999999999999999999887333
No 100
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=80.39 E-value=3.7 Score=32.87 Aligned_cols=39 Identities=18% Similarity=0.243 Sum_probs=35.1
Q ss_pred EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcce
Q 032116 98 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKH 136 (147)
Q Consensus 98 VeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~ 136 (147)
+.|+..||+|=|..+..+|+..|+||+-=.|.--|+.-+
T Consensus 6 ISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGI 44 (142)
T COG4747 6 ISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGI 44 (142)
T ss_pred EEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcce
Confidence 678999999999999999999999999999988777543
No 101
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=80.28 E-value=0.6 Score=34.13 Aligned_cols=47 Identities=21% Similarity=0.222 Sum_probs=36.4
Q ss_pred EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC----CCcceEEEEEecc
Q 032116 98 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLD----SSGKHNKFAITKA 144 (147)
Q Consensus 98 VeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTd----Gd~~~DVFyVTD~ 144 (147)
||++..-||-.+||++-|||.||.-|=+|.|.-. -+|-+=.|...|.
T Consensus 3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~ 53 (77)
T cd04898 3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEH 53 (77)
T ss_pred ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCC
Confidence 7888999999999999999999999999999632 2344444444443
No 102
>PRK06382 threonine dehydratase; Provisional
Probab=80.22 E-value=8.2 Score=33.75 Aligned_cols=38 Identities=29% Similarity=0.267 Sum_probs=33.3
Q ss_pred CCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEE
Q 032116 92 DPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVF 129 (147)
Q Consensus 92 s~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~IS 129 (147)
+.+-+-+.|.-.||+|.|.++++.|.+.|.||.+-...
T Consensus 327 ~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~ 364 (406)
T PRK06382 327 LGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVD 364 (406)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEe
Confidence 45677899999999999999999999999999876553
No 103
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=79.82 E-value=7.1 Score=34.71 Aligned_cols=47 Identities=21% Similarity=0.318 Sum_probs=35.6
Q ss_pred ceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEE-eCCCcceEEEEE
Q 032116 95 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVF-LDSSGKHNKFAI 141 (147)
Q Consensus 95 aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~IS-TdGd~~~DVFyV 141 (147)
-|-+-+...|++|.|+++.+.|++.|+|..|=.=- +.+.-+.=.|||
T Consensus 297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffi 344 (386)
T PRK10622 297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYL 344 (386)
T ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEE
Confidence 55555777899999999999999999999875433 234445667777
No 104
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=78.90 E-value=3.2 Score=36.76 Aligned_cols=61 Identities=13% Similarity=0.157 Sum_probs=46.0
Q ss_pred CCccCCCEEEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEE
Q 032116 77 TDTIPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKF 139 (147)
Q Consensus 77 ~~~~~~PrV~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVF 139 (147)
...+|.|.|.+.- ....++++- .-.|++|.+-.|++.|.+.|+||..=++...|+...-+|
T Consensus 322 ~~~vn~~~~~~~~-~~~~~rlii-~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~ii 382 (409)
T PRK11790 322 LSAVNFPEVSLPE-HPGGHRLLH-IHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVI 382 (409)
T ss_pred CcceeccccccCC-CCCCceEEE-EeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEE
Confidence 3556767666654 224566654 789999999999999999999998888888886654444
No 105
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=77.05 E-value=5.9 Score=23.07 Aligned_cols=33 Identities=24% Similarity=0.155 Sum_probs=25.0
Q ss_pred EEEEEeC---CcccHHHHHHHHHHhcCceEEEEEEE
Q 032116 97 IVEITFG---DRLGALLDTMNALKNLGLNVVKANVF 129 (147)
Q Consensus 97 IVeV~s~---DR~GLLldivqaL~dLgLnI~KA~IS 129 (147)
+|+|... +.+|.+.++.++|.+.|++|.--.-+
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~~ 37 (60)
T cd04868 2 KVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQS 37 (60)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEcC
Confidence 3444444 38899999999999999999765443
No 106
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=76.60 E-value=12 Score=30.27 Aligned_cols=49 Identities=12% Similarity=0.203 Sum_probs=40.9
Q ss_pred EEEEcC---CCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCC
Q 032116 84 KVIIDL---DSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS 132 (147)
Q Consensus 84 rV~IDN---dss~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdG 132 (147)
.|.||. +..+....+=+...||||.+-.+.+.|.+.|+||..-.+.-+.
T Consensus 134 iv~idg~~vd~~~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~ 185 (208)
T TIGR00719 134 ITEINGFAIEFRGEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKD 185 (208)
T ss_pred EEEECCEEEEecCCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecC
Confidence 466665 5566667777888999999999999999999999999998753
No 107
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=76.37 E-value=6.6 Score=34.68 Aligned_cols=38 Identities=26% Similarity=0.397 Sum_probs=35.0
Q ss_pred CceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC
Q 032116 94 DATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 131 (147)
Q Consensus 94 ~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTd 131 (147)
...++.|+-.|++|+...|+..|.+.|+||..+.-.+|
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D 43 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDD 43 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccc
Confidence 56899999999999999999999999999999887754
No 108
>PRK06349 homoserine dehydrogenase; Provisional
Probab=75.66 E-value=9.5 Score=33.78 Aligned_cols=48 Identities=10% Similarity=0.117 Sum_probs=38.2
Q ss_pred EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEecc
Q 032116 97 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKA 144 (147)
Q Consensus 97 IVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD~ 144 (147)
-+.+...|++|.|..+...|.+.|.+|..-.-....+.....++||+.
T Consensus 350 ylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~~ 397 (426)
T PRK06349 350 YLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTHE 397 (426)
T ss_pred EEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEEe
Confidence 577888999999999999999999999976544333356677888863
No 109
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=75.22 E-value=6.2 Score=33.39 Aligned_cols=37 Identities=27% Similarity=0.414 Sum_probs=32.3
Q ss_pred EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCc
Q 032116 98 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSG 134 (147)
Q Consensus 98 VeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~ 134 (147)
+.+.+.||+|.|.+++-.+.++|-||.-|.-..+++.
T Consensus 5 lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g 41 (218)
T COG1707 5 LSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDG 41 (218)
T ss_pred eEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccC
Confidence 5678899999999999999999999999877665554
No 110
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=73.79 E-value=4.7 Score=34.47 Aligned_cols=33 Identities=27% Similarity=0.369 Sum_probs=29.3
Q ss_pred EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEE
Q 032116 97 IVEITFGDRLGALLDTMNALKNLGLNVVKANVF 129 (147)
Q Consensus 97 IVeV~s~DR~GLLldivqaL~dLgLnI~KA~IS 129 (147)
-+.|.-.||||.|.++.+.+.+.|.||..-...
T Consensus 307 ~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~ 339 (380)
T TIGR01127 307 RIETVLPDRPGALYHLLESIAEARANIVKIDHD 339 (380)
T ss_pred EEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEee
Confidence 678899999999999999999999999866443
No 111
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=67.39 E-value=8.6 Score=34.86 Aligned_cols=36 Identities=17% Similarity=0.180 Sum_probs=32.5
Q ss_pred EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCC
Q 032116 98 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS 133 (147)
Q Consensus 98 VeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd 133 (147)
++|...||.|+-.|+.+.|...++++..-.|+..|.
T Consensus 3 l~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~~~ 38 (520)
T PRK10820 3 LEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIGR 38 (520)
T ss_pred EEEEeeccccHHHHHHHHHHhcCCCccEEEEcCCCe
Confidence 689999999999999999999999999888876543
No 112
>PRK11898 prephenate dehydratase; Provisional
Probab=66.70 E-value=14 Score=31.35 Aligned_cols=47 Identities=19% Similarity=0.208 Sum_probs=31.6
Q ss_pred ceEEEEEeC-CcccHHHHHHHHHHhcCceEEEEEEEe-CCCcceEEEEE
Q 032116 95 ATIVEITFG-DRLGALLDTMNALKNLGLNVVKANVFL-DSSGKHNKFAI 141 (147)
Q Consensus 95 aTIVeV~s~-DR~GLLldivqaL~dLgLnI~KA~IST-dGd~~~DVFyV 141 (147)
.|-+-+.-. ||+|.|+++.+.|++.|+|+.|=.=-- .++...=.|||
T Consensus 196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~v 244 (283)
T PRK11898 196 KTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFI 244 (283)
T ss_pred eEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEE
Confidence 455556654 469999999999999999998743322 12222345666
No 113
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=65.11 E-value=31 Score=21.52 Aligned_cols=34 Identities=12% Similarity=0.111 Sum_probs=26.5
Q ss_pred eEEEEEeC---CcccHHHHHHHHHHhcCceEEEEEEE
Q 032116 96 TIVEITFG---DRLGALLDTMNALKNLGLNVVKANVF 129 (147)
Q Consensus 96 TIVeV~s~---DR~GLLldivqaL~dLgLnI~KA~IS 129 (147)
.+|.|... +++|.+.++.++|.+.|++|.--.-+
T Consensus 2 ~~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~ 38 (66)
T cd04919 2 AILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQG 38 (66)
T ss_pred eEEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEec
Confidence 35555554 68999999999999999999765443
No 114
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=64.45 E-value=13 Score=34.61 Aligned_cols=39 Identities=10% Similarity=0.269 Sum_probs=31.8
Q ss_pred cCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEE
Q 032116 88 DLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKA 126 (147)
Q Consensus 88 DNdss~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA 126 (147)
|.......|-+-++-.|++|.|.++.++|++.|+|+.+=
T Consensus 24 ~~~~~~~ktSLIFsL~d~pGaL~~vL~vFa~~gINLThI 62 (464)
T TIGR01270 24 DEEEGVQRLSIIFSLSNVVGDLSKAIAIFQDRHINILHL 62 (464)
T ss_pred ccCCCCceEEEEEECCCCchHHHHHHHHHHHCCCCEEEE
Confidence 444555567777777999999999999999999999864
No 115
>PRK08198 threonine dehydratase; Provisional
Probab=63.89 E-value=13 Score=32.05 Aligned_cols=38 Identities=21% Similarity=0.312 Sum_probs=33.2
Q ss_pred CCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEE
Q 032116 92 DPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVF 129 (147)
Q Consensus 92 s~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~IS 129 (147)
..+..-+.|.-.||||.|..+.+.+.+.|.||..-...
T Consensus 324 ~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~ 361 (404)
T PRK08198 324 AGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD 361 (404)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence 45556889999999999999999999999999877665
No 116
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=61.80 E-value=18 Score=22.35 Aligned_cols=33 Identities=15% Similarity=0.177 Sum_probs=26.0
Q ss_pred eEEEEEe---CCcccHHHHHHHHHHhcCceEEEEEE
Q 032116 96 TIVEITF---GDRLGALLDTMNALKNLGLNVVKANV 128 (147)
Q Consensus 96 TIVeV~s---~DR~GLLldivqaL~dLgLnI~KA~I 128 (147)
++|.|.. .+.+|++.++.++|.+.|++|.--.-
T Consensus 2 ~~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~ 37 (66)
T cd04922 2 SILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQ 37 (66)
T ss_pred eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 3455555 47899999999999999999976543
No 117
>PLN02317 arogenate dehydratase
Probab=59.57 E-value=40 Score=30.55 Aligned_cols=33 Identities=15% Similarity=0.296 Sum_probs=29.2
Q ss_pred ceEEEEEeCCcccHHHHHHHHHHhcCceEEEEE
Q 032116 95 ATIVEITFGDRLGALLDTMNALKNLGLNVVKAN 127 (147)
Q Consensus 95 aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ 127 (147)
-|-+-+.-.|++|.|+.+.++|+..|+|+.|=.
T Consensus 283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIE 315 (382)
T PLN02317 283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIE 315 (382)
T ss_pred cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEE
Confidence 477777778999999999999999999998754
No 118
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=59.28 E-value=19 Score=33.33 Aligned_cols=32 Identities=19% Similarity=0.342 Sum_probs=28.0
Q ss_pred ceEEEEEeCCcccHHHHHHHHHHhcCceEEEE
Q 032116 95 ATIVEITFGDRLGALLDTMNALKNLGLNVVKA 126 (147)
Q Consensus 95 aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA 126 (147)
-|-+-++-.|++|.|.++.++|++.|+|+.+=
T Consensus 16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthI 47 (436)
T TIGR01268 16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHI 47 (436)
T ss_pred eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEE
Confidence 36677777999999999999999999999863
No 119
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=58.59 E-value=22 Score=22.29 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=21.5
Q ss_pred CCcccHHHHHHHHHHhcCceEEEE
Q 032116 103 GDRLGALLDTMNALKNLGLNVVKA 126 (147)
Q Consensus 103 ~DR~GLLldivqaL~dLgLnI~KA 126 (147)
.+++|...++.++|.+.|+++.--
T Consensus 11 ~~~~~~~~~if~~l~~~~i~v~~i 34 (62)
T cd04890 11 NGEVGFLRKIFEILEKHGISVDLI 34 (62)
T ss_pred CcccCHHHHHHHHHHHcCCeEEEE
Confidence 477899999999999999999865
No 120
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=58.42 E-value=21 Score=21.17 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=22.0
Q ss_pred CCcccHHHHHHHHHHhcCceEEEEEE
Q 032116 103 GDRLGALLDTMNALKNLGLNVVKANV 128 (147)
Q Consensus 103 ~DR~GLLldivqaL~dLgLnI~KA~I 128 (147)
.+++|++.++.++|.+.|++|..-.-
T Consensus 11 ~~~~~~~~~i~~~l~~~~i~v~~i~~ 36 (65)
T cd04892 11 RGTPGVAARIFSALAEAGINIIMISQ 36 (65)
T ss_pred CCCccHHHHHHHHHHHCCCcEEEEEc
Confidence 37899999999999999999865543
No 121
>PRK06545 prephenate dehydrogenase; Validated
Probab=57.01 E-value=18 Score=30.95 Aligned_cols=39 Identities=13% Similarity=0.180 Sum_probs=34.1
Q ss_pred CCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEe
Q 032116 92 DPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFL 130 (147)
Q Consensus 92 s~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~IST 130 (147)
-+.+.-|-|.-.||||.|..+.+.|.+.|+||+.-.|.-
T Consensus 287 ~~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~ 325 (359)
T PRK06545 287 IPSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILE 325 (359)
T ss_pred CCcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeee
Confidence 356777888889999999999999999999999888843
No 122
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=56.45 E-value=18 Score=29.80 Aligned_cols=35 Identities=14% Similarity=0.183 Sum_probs=29.3
Q ss_pred CceEEEEEe--CCcccHHHHHHHHHHhcCceEEEEEE
Q 032116 94 DATIVEITF--GDRLGALLDTMNALKNLGLNVVKANV 128 (147)
Q Consensus 94 ~aTIVeV~s--~DR~GLLldivqaL~dLgLnI~KA~I 128 (147)
..-|++|.. ++.+|+|..+.+.|.+.|++|+-+..
T Consensus 92 G~gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~ 128 (167)
T COG2150 92 GLGVIEIYPEDARYPGILAGVASLIAKRGISIRQIIS 128 (167)
T ss_pred CCeEEEEEeccCCCccHHHHHHHHHHHcCceEEEEec
Confidence 445677665 78899999999999999999998754
No 123
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=52.67 E-value=32 Score=21.17 Aligned_cols=34 Identities=21% Similarity=0.221 Sum_probs=26.4
Q ss_pred eEEEEEeC---CcccHHHHHHHHHHhcCceEEEEEEE
Q 032116 96 TIVEITFG---DRLGALLDTMNALKNLGLNVVKANVF 129 (147)
Q Consensus 96 TIVeV~s~---DR~GLLldivqaL~dLgLnI~KA~IS 129 (147)
++|.|... +++|++.++.++|.+.|++|.--..+
T Consensus 2 ~~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~ 38 (66)
T cd04924 2 AVVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQG 38 (66)
T ss_pred eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEec
Confidence 34555543 77899999999999999999766543
No 124
>PF03551 PadR: Transcriptional regulator PadR-like family; InterPro: IPR005149 Phenolic acids, also called substituted hydroxycinnamic acids, are abundant in the plant kingdom because they are involved in the structure of plant cell walls and are present in some vacuoles. In plant-soil ecosystems they are released as free acids by hemicellulases produced by several fungi and bacteria. Of these weak acids, the most abundant are p-coumaric, ferulic, and caffeic acids, considered to be natural toxins that inhibit the growth of microorganisms, especially at low pHs. In spite of this chemical stress, some bacteria can use phenolic acids as a sole source of carbon. For other microorganisms, these compounds induce a specific response by which the organism adapts to its environment. The ubiquitous lactic acid bacterium Lactobacillus plantarum exhibits an inducible phenolic acid decarboxylase (PAD) activity which converts these substrates into less-toxic vinyl phenol derivatives. PadR acts as a repressor of padA gene expression in the phenolic acid stress response [].; PDB: 1XMA_B 2ESH_A 2DQL_B 3L9F_C 3ELK_B 4EJO_B 3L7W_A 3HHH_A 1YG2_A 3F8B_A ....
Probab=49.30 E-value=66 Score=21.30 Aligned_cols=39 Identities=18% Similarity=0.219 Sum_probs=32.2
Q ss_pred cccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEecc
Q 032116 105 RLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKA 144 (147)
Q Consensus 105 R~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD~ 144 (147)
.+|-||.+.+-|.+-|+.-..-... .++..-.+|.||+.
T Consensus 30 ~~g~lY~~L~~Le~~gli~~~~~~~-~~~~~rk~Y~iT~~ 68 (75)
T PF03551_consen 30 SPGSLYPALKRLEEEGLIESRWEEE-GNGRPRKYYRITEK 68 (75)
T ss_dssp THHHHHHHHHHHHHTTSEEEEEEEE-TTSSEEEEEEESHH
T ss_pred ChhHHHHHHHHHHhCCCEEEeeecc-CCCCCCEEEEECHH
Confidence 4899999999999999987777766 66666778888874
No 125
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=48.38 E-value=44 Score=21.40 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=23.6
Q ss_pred EEEEEeC---CcccHHHHHHHHHHhcCceEE
Q 032116 97 IVEITFG---DRLGALLDTMNALKNLGLNVV 124 (147)
Q Consensus 97 IVeV~s~---DR~GLLldivqaL~dLgLnI~ 124 (147)
+|.|... +++|++..+.++|.+.|++|.
T Consensus 3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence 4555554 789999999999999999996
No 126
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=48.11 E-value=35 Score=23.30 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=25.2
Q ss_pred eEEEEE---eCCcccHHHHHHHHHHhcCceEEEE
Q 032116 96 TIVEIT---FGDRLGALLDTMNALKNLGLNVVKA 126 (147)
Q Consensus 96 TIVeV~---s~DR~GLLldivqaL~dLgLnI~KA 126 (147)
+.|.|. -.+++|.+..+.++|.+.|++|..=
T Consensus 2 ~~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI 35 (75)
T cd04932 2 TLVTLKSPNMLHAQGFLAKVFGILAKHNISVDLI 35 (75)
T ss_pred EEEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEE
Confidence 345552 4678999999999999999999865
No 127
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=45.89 E-value=81 Score=20.42 Aligned_cols=34 Identities=21% Similarity=0.290 Sum_probs=26.4
Q ss_pred eEEEEE---eCCcccHHHHHHHHHHhcCceEEEEEEE
Q 032116 96 TIVEIT---FGDRLGALLDTMNALKNLGLNVVKANVF 129 (147)
Q Consensus 96 TIVeV~---s~DR~GLLldivqaL~dLgLnI~KA~IS 129 (147)
++|+|. -.+++|++.++.++|.+.|+++..-.-+
T Consensus 2 ~~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~ 38 (80)
T cd04921 2 ALINIEGTGMVGVPGIAARIFSALARAGINVILISQA 38 (80)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEec
Confidence 456663 3478899999999999999999765443
No 128
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=45.70 E-value=56 Score=29.87 Aligned_cols=46 Identities=26% Similarity=0.320 Sum_probs=35.9
Q ss_pred EEEcC---CCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEe
Q 032116 85 VIIDL---DSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFL 130 (147)
Q Consensus 85 V~IDN---dss~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~IST 130 (147)
+.||. +..+....+=+...|+||.+..+.+.|.+.|+||..-.++-
T Consensus 439 ~~ing~~v~~~~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r 487 (526)
T PRK13581 439 VEIDGYRVDAKPEGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGR 487 (526)
T ss_pred EEECCEEEEeeCCceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEecc
Confidence 44554 34455566666779999999999999999999998887765
No 129
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=41.34 E-value=30 Score=32.63 Aligned_cols=36 Identities=19% Similarity=0.237 Sum_probs=32.0
Q ss_pred EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCC
Q 032116 98 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS 133 (147)
Q Consensus 98 VeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd 133 (147)
++|+..||.|+..|+...|-.-|+++....|.--|.
T Consensus 3 leV~cedRlGltrelLdlLv~r~idl~~iEid~~~~ 38 (511)
T COG3283 3 LEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGR 38 (511)
T ss_pred eEEEehhhhchHHHHHHHHHhcccCccceeecCCCe
Confidence 689999999999999999999999999988854443
No 130
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=41.18 E-value=30 Score=28.09 Aligned_cols=29 Identities=24% Similarity=0.536 Sum_probs=25.4
Q ss_pred EEEEEeCCcccHHHHHHHHHHhcCceEEE
Q 032116 97 IVEITFGDRLGALLDTMNALKNLGLNVVK 125 (147)
Q Consensus 97 IVeV~s~DR~GLLldivqaL~dLgLnI~K 125 (147)
-+.+.-.||.|.|.++.+++.+.++||-.
T Consensus 74 TL~l~ledr~G~LS~vLd~iA~~~~nvLT 102 (150)
T COG4492 74 TLSLSLEDRVGILSDVLDVIAREEINVLT 102 (150)
T ss_pred EEEEEEhhhhhhHHHHHHHHHHhCCcEEE
Confidence 35677899999999999999999999854
No 131
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=39.87 E-value=40 Score=22.97 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=22.3
Q ss_pred eCCcccHHHHHHHHHHhcCceEEEE
Q 032116 102 FGDRLGALLDTMNALKNLGLNVVKA 126 (147)
Q Consensus 102 s~DR~GLLldivqaL~dLgLnI~KA 126 (147)
-.+.+|.+..+.++|.+.|++|..=
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~vDmI 35 (75)
T cd04935 11 MWQQVGFLADVFAPFKKHGVSVDLV 35 (75)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEE
Confidence 4578999999999999999999865
No 132
>PRK08526 threonine dehydratase; Provisional
Probab=38.96 E-value=51 Score=29.23 Aligned_cols=37 Identities=27% Similarity=0.370 Sum_probs=32.2
Q ss_pred CCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEE
Q 032116 92 DPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANV 128 (147)
Q Consensus 92 s~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~I 128 (147)
+.+.--+.|.-.||||.|.++.+.+...|.||..-+-
T Consensus 323 ~~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~ 359 (403)
T PRK08526 323 SYRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDY 359 (403)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEE
Confidence 4566778899999999999999999999999986544
No 133
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=38.23 E-value=67 Score=21.35 Aligned_cols=31 Identities=23% Similarity=0.279 Sum_probs=24.5
Q ss_pred eEEEEE---eCCcccHHHHHHHHHHhcCceEEEE
Q 032116 96 TIVEIT---FGDRLGALLDTMNALKNLGLNVVKA 126 (147)
Q Consensus 96 TIVeV~---s~DR~GLLldivqaL~dLgLnI~KA 126 (147)
++|.|. -.+.+|.+..+.++|.+.|++|.--
T Consensus 2 ~~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i 35 (75)
T cd04912 2 TLLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLI 35 (75)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEE
Confidence 455553 3577999999999999999999543
No 134
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=38.11 E-value=51 Score=27.30 Aligned_cols=34 Identities=26% Similarity=0.455 Sum_probs=29.1
Q ss_pred EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC
Q 032116 98 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 131 (147)
Q Consensus 98 VeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTd 131 (147)
+.|.-.||||.|+-+.|=|+..|-||..--=+-+
T Consensus 8 ldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~ 41 (170)
T COG2061 8 LDIELKDKPGQLLKVLQPLSKTGANIITIIHSRD 41 (170)
T ss_pred EEEEecCCCcchhhhhcchhhcCccEEEEEeecC
Confidence 4678899999999999999999999987655555
No 135
>PRK06635 aspartate kinase; Reviewed
Probab=36.82 E-value=59 Score=28.02 Aligned_cols=34 Identities=21% Similarity=0.241 Sum_probs=28.7
Q ss_pred CCceEEEEEe---CCcccHHHHHHHHHHhcCceEEEE
Q 032116 93 PDATIVEITF---GDRLGALLDTMNALKNLGLNVVKA 126 (147)
Q Consensus 93 ~~aTIVeV~s---~DR~GLLldivqaL~dLgLnI~KA 126 (147)
++.+++.|.. .+++|.+.++.++|.+.|++|.--
T Consensus 338 ~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i 374 (404)
T PRK06635 338 DDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMI 374 (404)
T ss_pred CCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEE
Confidence 3566788865 689999999999999999999764
No 136
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=36.75 E-value=1e+02 Score=18.90 Aligned_cols=33 Identities=18% Similarity=0.225 Sum_probs=26.0
Q ss_pred EEEEEe---CCcccHHHHHHHHHHhcCceEEEEEEE
Q 032116 97 IVEITF---GDRLGALLDTMNALKNLGLNVVKANVF 129 (147)
Q Consensus 97 IVeV~s---~DR~GLLldivqaL~dLgLnI~KA~IS 129 (147)
+|.|.. .+++|++..+.++|.+.|++|..-..+
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~ 38 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQG 38 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEec
Confidence 445544 368999999999999999999876543
No 137
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=35.59 E-value=71 Score=21.76 Aligned_cols=29 Identities=14% Similarity=0.111 Sum_probs=24.6
Q ss_pred HHHHHHHHHhcCceEEEEEEEeCCCcceE
Q 032116 109 LLDTMNALKNLGLNVVKANVFLDSSGKHN 137 (147)
Q Consensus 109 LldivqaL~dLgLnI~KA~ISTdGd~~~D 137 (147)
.-++.+.|.+.|..|.+-++..+|.|-++
T Consensus 31 ~~~~~~~l~~~G~~v~~ve~~~~g~yev~ 59 (83)
T PF13670_consen 31 IEQAVAKLEAQGYQVREVEFDDDGCYEVE 59 (83)
T ss_pred HHHHHHHHHhcCCceEEEEEcCCCEEEEE
Confidence 57889999999999999999778777554
No 138
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=34.58 E-value=56 Score=19.69 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=21.7
Q ss_pred CCcccHHHHHHHHHHhcCceEEEEE
Q 032116 103 GDRLGALLDTMNALKNLGLNVVKAN 127 (147)
Q Consensus 103 ~DR~GLLldivqaL~dLgLnI~KA~ 127 (147)
.+.+|++.++.++|.+.|+++..-.
T Consensus 11 ~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04923 11 RSHPGVAAKMFKALAEAGINIEMIS 35 (63)
T ss_pred CCCccHHHHHHHHHHHCCCCEEEEE
Confidence 4678999999999999999996654
No 139
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=33.55 E-value=94 Score=26.75 Aligned_cols=34 Identities=18% Similarity=0.243 Sum_probs=27.9
Q ss_pred CCCceEEEEEeC---CcccHHHHHHHHHHhcCceEEE
Q 032116 92 DPDATIVEITFG---DRLGALLDTMNALKNLGLNVVK 125 (147)
Q Consensus 92 s~~aTIVeV~s~---DR~GLLldivqaL~dLgLnI~K 125 (147)
..+.++|.|... +++|.+..+.++|.+.|+||..
T Consensus 334 ~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~ 370 (401)
T TIGR00656 334 EEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILM 370 (401)
T ss_pred eCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEE
Confidence 345666666664 7999999999999999999983
No 140
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=32.43 E-value=76 Score=28.03 Aligned_cols=36 Identities=17% Similarity=0.216 Sum_probs=29.1
Q ss_pred CCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEE
Q 032116 92 DPDATIVEITFGDRLGALLDTMNALKNLGLNVVKAN 127 (147)
Q Consensus 92 s~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ 127 (147)
+.+.-.+.|...||||.|.++.+.+...+-||..-+
T Consensus 322 ~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~ 357 (409)
T TIGR02079 322 EGLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFE 357 (409)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEE
Confidence 456678899999999999999996666766887433
No 141
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.40 E-value=66 Score=22.51 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=23.4
Q ss_pred EEeCCcccHHHHHHHHHHhcCceEEEE
Q 032116 100 ITFGDRLGALLDTMNALKNLGLNVVKA 126 (147)
Q Consensus 100 V~s~DR~GLLldivqaL~dLgLnI~KA 126 (147)
..-.+.+|.+.++.++|.+.|++|..-
T Consensus 9 ~~~~~~~g~~a~IF~~La~~~InVDmI 35 (78)
T cd04933 9 TRMLGQYGFLAKVFSIFETLGISVDVV 35 (78)
T ss_pred CCCCCccCHHHHHHHHHHHcCCcEEEE
Confidence 334688999999999999999999875
No 142
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=31.37 E-value=1.6e+02 Score=19.50 Aligned_cols=43 Identities=12% Similarity=0.076 Sum_probs=30.4
Q ss_pred EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032116 97 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 145 (147)
Q Consensus 97 IVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD~d 145 (147)
.+-+...| +-+..+.|+.+|.++.+.-.... +....||+.|.+
T Consensus 64 ~~~f~v~d----i~~~~~~l~~~g~~~~~~~~~~~--~~~~~~~~~DPd 106 (114)
T cd07247 64 LVYFAVDD----VDAAAARVEAAGGKVLVPPTDIP--GVGRFAVFADPE 106 (114)
T ss_pred EEEEEeCC----HHHHHHHHHHCCCEEEeCCcccC--CcEEEEEEECCC
Confidence 34444455 67788999999999987755433 333689999976
No 143
>PRK06635 aspartate kinase; Reviewed
Probab=30.97 E-value=1.2e+02 Score=26.11 Aligned_cols=35 Identities=20% Similarity=0.177 Sum_probs=26.9
Q ss_pred ceEEEEE-eCCcccHHHHHHHHHHhcCceEEEEEEE
Q 032116 95 ATIVEIT-FGDRLGALLDTMNALKNLGLNVVKANVF 129 (147)
Q Consensus 95 aTIVeV~-s~DR~GLLldivqaL~dLgLnI~KA~IS 129 (147)
..+|.|. -.+++|.|..+.++|.+.|++|.--.-+
T Consensus 262 v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s 297 (404)
T PRK06635 262 EAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQN 297 (404)
T ss_pred eEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEec
Confidence 3444443 4678999999999999999999965443
No 144
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=30.06 E-value=74 Score=19.13 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=21.9
Q ss_pred CCcccHHHHHHHHHHhcCceEEEEE
Q 032116 103 GDRLGALLDTMNALKNLGLNVVKAN 127 (147)
Q Consensus 103 ~DR~GLLldivqaL~dLgLnI~KA~ 127 (147)
.+.+|++.++.+.|.+.|+++..-.
T Consensus 11 ~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04936 11 RSHPGVAAKMFEALAEAGINIEMIS 35 (63)
T ss_pred CCCccHHHHHHHHHHHCCCcEEEEE
Confidence 4678999999999999999996654
No 145
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=28.95 E-value=68 Score=22.89 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=20.5
Q ss_pred EEEEEeCCcccHHHHHHHHHHhcCceEE
Q 032116 97 IVEITFGDRLGALLDTMNALKNLGLNVV 124 (147)
Q Consensus 97 IVeV~s~DR~GLLldivqaL~dLgLnI~ 124 (147)
++.|...||.+++ ++++.|.++|+.|-
T Consensus 4 lisv~~~dk~~~~-~~a~~l~~~G~~i~ 30 (116)
T cd01423 4 LISIGSYSKPELL-PTAQKLSKLGYKLY 30 (116)
T ss_pred EEecCcccchhHH-HHHHHHHHCCCEEE
Confidence 4566667887665 88888888888873
No 146
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.67 E-value=2e+02 Score=19.94 Aligned_cols=42 Identities=21% Similarity=0.214 Sum_probs=28.2
Q ss_pred EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEE
Q 032116 97 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKF 139 (147)
Q Consensus 97 IVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVF 139 (147)
++.|....|||.|..-.+.|.. +-+|..=.=--.|+..-.+|
T Consensus 3 ~~~v~iPErpGal~~Fl~~l~p-~~~ITeF~YR~~~~~~a~vl 44 (81)
T cd04907 3 LFRFEFPERPGALKKFLNELLP-KWNITLFHYRNQGSDYGRVL 44 (81)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC-CCeEeEEEEecCCCCceeEE
Confidence 5789999999999999999853 56666544333333333333
No 147
>PRK08639 threonine dehydratase; Validated
Probab=27.93 E-value=1.1e+02 Score=27.01 Aligned_cols=36 Identities=14% Similarity=0.207 Sum_probs=28.0
Q ss_pred CCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEE
Q 032116 92 DPDATIVEITFGDRLGALLDTMNALKNLGLNVVKAN 127 (147)
Q Consensus 92 s~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ 127 (147)
+.+.--+.|...||||.|.++.+.+...+-||..-.
T Consensus 333 ~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~ 368 (420)
T PRK08639 333 EGLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFE 368 (420)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEE
Confidence 456677899999999999999995555555777543
No 148
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=26.84 E-value=1.1e+02 Score=26.65 Aligned_cols=60 Identities=22% Similarity=0.324 Sum_probs=48.0
Q ss_pred ccCCCEEEEcCCCCCCceEEEEEeCCcc-------cHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEec
Q 032116 79 TIPTPKVIIDLDSDPDATIVEITFGDRL-------GALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITK 143 (147)
Q Consensus 79 ~~~~PrV~IDNdss~~aTIVeV~s~DR~-------GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD 143 (147)
.++.--|+|=+.++++..+..+.+.+.. .||..+.++=+++|+.++.+.|- -.|.||=.|
T Consensus 98 ~v~l~DvVia~~A~tds~~~~~~f~~~df~~~ad~~Ll~~a~~~A~e~gi~~hvgnv~-----ssD~FY~~~ 164 (236)
T COG0813 98 DVKLRDVVIAQGASTDSNVNRIRFKPHDFAPIADFELLEKAYETAKELGIDTHVGNVF-----SSDLFYNPD 164 (236)
T ss_pred CcccceEEEeccccCcchhhhcccCcccccccCCHHHHHHHHHHHHHhCCceeeeeee-----eeecccCCC
Confidence 3444558888888888888877776654 78999999999999999999886 368998654
No 149
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=25.64 E-value=2.7e+02 Score=29.86 Aligned_cols=56 Identities=21% Similarity=0.280 Sum_probs=0.0
Q ss_pred CCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEE---EEEe-CCCcc-eEEEEEeccc
Q 032116 90 DSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKA---NVFL-DSSGK-HNKFAITKAY 145 (147)
Q Consensus 90 dss~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA---~IST-dGd~~-~DVFyVTD~d 145 (147)
+..+...-++++...++..|.+++.+|.+|||.|... .|.. +|+.+ +..|++....
T Consensus 484 ~~~~~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~ 544 (1528)
T PF05088_consen 484 GAGPGRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPD 544 (1528)
T ss_pred CCCCCeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCC
No 150
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=25.14 E-value=1.4e+02 Score=21.35 Aligned_cols=31 Identities=29% Similarity=0.490 Sum_probs=25.5
Q ss_pred HHHHHHHhcCceEEEEEEEeCCCcc--eEEEEE
Q 032116 111 DTMNALKNLGLNVVKANVFLDSSGK--HNKFAI 141 (147)
Q Consensus 111 divqaL~dLgLnI~KA~ISTdGd~~--~DVFyV 141 (147)
+|.+.|+++|+.+..++--..++|. ++-|+|
T Consensus 3 ~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~v 35 (69)
T smart00596 3 QIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEV 35 (69)
T ss_pred HHHHHHHHcCCceeEEEcccccCCCCcceeEEE
Confidence 6889999999999999987766644 777776
No 151
>PF02319 E2F_TDP: E2F/DP family winged-helix DNA-binding domain; InterPro: IPR003316 The mammalian transcription factor E2F plays an important role in regulating the expression of genes that are required for passage through the cell cycle. Multiple E2F family members have been identified that bind to DNA as heterodimers, interacting with proteins known as DP - the dimerisation partners [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005667 transcription factor complex; PDB: 1CF7_B.
Probab=24.66 E-value=61 Score=22.08 Aligned_cols=17 Identities=41% Similarity=0.530 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhcCceEE
Q 032116 108 ALLDTMNALKNLGLNVV 124 (147)
Q Consensus 108 LLldivqaL~dLgLnI~ 124 (147)
=||||+.+|..+|+--.
T Consensus 45 RlYDI~NVLealgli~K 61 (71)
T PF02319_consen 45 RLYDIINVLEALGLIEK 61 (71)
T ss_dssp HHHHHHHHHHHCTSEEE
T ss_pred hhhHHHHHHHHhCceee
Confidence 38999999999998543
No 152
>PRK09224 threonine dehydratase; Reviewed
Probab=24.41 E-value=2.8e+02 Score=25.38 Aligned_cols=45 Identities=20% Similarity=0.304 Sum_probs=31.8
Q ss_pred CCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEE
Q 032116 93 PDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKF 139 (147)
Q Consensus 93 ~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVF 139 (147)
.+--.+.|...||||.|.+..+.|. +-||..-+-.-.+.....+|
T Consensus 326 ~re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~ 370 (504)
T PRK09224 326 QREALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIF 370 (504)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEE
Confidence 4567899999999999999999999 56666544333333334444
No 153
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=24.34 E-value=2.1e+02 Score=18.67 Aligned_cols=37 Identities=11% Similarity=0.109 Sum_probs=27.4
Q ss_pred HHHHHHHHHhcCceEEEEEEEeCC-CcceEEEEEeccc
Q 032116 109 LLDTMNALKNLGLNVVKANVFLDS-SGKHNKFAITKAY 145 (147)
Q Consensus 109 LldivqaL~dLgLnI~KA~ISTdG-d~~~DVFyVTD~d 145 (147)
+-++.+.|.+.|+.+..+-....| .+....||+.|.+
T Consensus 79 ~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPd 116 (125)
T cd07253 79 IDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPD 116 (125)
T ss_pred HHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCC
Confidence 778889999999998766554333 3445779999976
No 154
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=23.97 E-value=1.6e+02 Score=19.35 Aligned_cols=37 Identities=14% Similarity=0.087 Sum_probs=26.2
Q ss_pred cHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032116 107 GALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 145 (147)
Q Consensus 107 GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD~d 145 (147)
--+.++.+.|++.|+.+..... ...+....||+.|.+
T Consensus 69 ~~v~~~~~~l~~~g~~~~~~~~--~~~~~~~~~~~~DP~ 105 (117)
T cd07240 69 EDLEALAAHLEAAGVAPEEASD--PEPGVGRGLRFQDPD 105 (117)
T ss_pred HHHHHHHHHHHHcCCceEEcCc--cCCCCceEEEEECCC
Confidence 3567788889999998866433 233445788998875
No 155
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=23.90 E-value=2.1e+02 Score=18.51 Aligned_cols=37 Identities=16% Similarity=0.079 Sum_probs=27.0
Q ss_pred cHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032116 107 GALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 145 (147)
Q Consensus 107 GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD~d 145 (147)
-=+-++.+.|.++|..+...-..... -+-.||+.|.+
T Consensus 65 ~dv~~~~~~l~~~G~~~~~~~~~~~~--g~~~~~~~DPd 101 (108)
T PF12681_consen 65 EDVDALYERLKELGAEIVTEPRDDPW--GQRSFYFIDPD 101 (108)
T ss_dssp SHHHHHHHHHHHTTSEEEEEEEEETT--SEEEEEEE-TT
T ss_pred cCHHHHHHHHHHCCCeEeeCCEEcCC--CeEEEEEECCC
Confidence 34677788999999998876665444 35689999876
No 156
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=23.63 E-value=1.8e+02 Score=18.74 Aligned_cols=35 Identities=11% Similarity=0.017 Sum_probs=26.5
Q ss_pred HHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEecccC
Q 032116 109 LLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAYV 146 (147)
Q Consensus 109 LldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD~d~ 146 (147)
+-++.+.|++.|..+.+.-. +..+ ...||+.|.+-
T Consensus 78 i~~~~~~l~~~g~~~~~~~~--~~~~-~~~~~~~DP~G 112 (119)
T cd07263 78 IDATYEELKARGVEFSEEPR--EMPY-GTVAVFRDPDG 112 (119)
T ss_pred HHHHHHHHHhCCCEEeeccc--cCCC-ceEEEEECCCC
Confidence 78899999999998887652 3333 46899999763
No 157
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=23.56 E-value=1.8e+02 Score=19.33 Aligned_cols=39 Identities=10% Similarity=0.125 Sum_probs=28.1
Q ss_pred cHHHHHHHHHHhcCceEEEEEEEeC-C-CcceEEEEEeccc
Q 032116 107 GALLDTMNALKNLGLNVVKANVFLD-S-SGKHNKFAITKAY 145 (147)
Q Consensus 107 GLLldivqaL~dLgLnI~KA~ISTd-G-d~~~DVFyVTD~d 145 (147)
.-|-++.+-|++.|+.+...-.... | .+....||+.|.+
T Consensus 76 ~dv~~~~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPd 116 (125)
T cd08357 76 EEFDALAERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPS 116 (125)
T ss_pred HHHHHHHHHHHHCCCcEecCcceeccCCcCceeEEEEECCC
Confidence 4688999999999999886544322 1 2345779999876
No 158
>TIGR03433 padR_acidobact transcriptional regulator, Acidobacterial, PadR-family. Members of this protein family are putative transcriptional regulators of the PadR family, as found in species of the Acidobacteria. This family of proteins has expanded greatly in this lineage, and where it regularly is found in the vicinity of a putative transporter protein
Probab=21.91 E-value=2.2e+02 Score=20.11 Aligned_cols=39 Identities=15% Similarity=0.192 Sum_probs=28.9
Q ss_pred cccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEecc
Q 032116 105 RLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKA 144 (147)
Q Consensus 105 R~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD~ 144 (147)
.+|.+|-+.+-|.+-|+-...- ...+++...-.|+||+.
T Consensus 38 ~~gtlY~~L~rLe~~GlI~~~~-~~~~~~~~rk~y~iT~~ 76 (100)
T TIGR03433 38 EEGSLYPALHRLERRGWIAAEW-GESENNRRAKFYRLTAA 76 (100)
T ss_pred CCCcHHHHHHHHHHCCCeEEEe-eecCCCCCceEEEECHH
Confidence 4588999999999999876643 33445555578999875
No 159
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=21.87 E-value=1.6e+02 Score=25.38 Aligned_cols=34 Identities=24% Similarity=0.229 Sum_probs=28.0
Q ss_pred CCceEEEEE---eCCcccHHHHHHHHHHhcCceEEEE
Q 032116 93 PDATIVEIT---FGDRLGALLDTMNALKNLGLNVVKA 126 (147)
Q Consensus 93 ~~aTIVeV~---s~DR~GLLldivqaL~dLgLnI~KA 126 (147)
++..+|.|. -.+++|.+..+.++|.+.|++|..-
T Consensus 258 ~~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i 294 (401)
T TIGR00656 258 KNVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLI 294 (401)
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEE
Confidence 356677776 4688999999999999999999743
No 160
>PRK08210 aspartate kinase I; Reviewed
Probab=21.79 E-value=2.4e+02 Score=24.50 Aligned_cols=37 Identities=19% Similarity=0.339 Sum_probs=30.7
Q ss_pred CCceEEEEEeCCc-ccHHHHHHHHHHhcCceEEEEEEE
Q 032116 93 PDATIVEITFGDR-LGALLDTMNALKNLGLNVVKANVF 129 (147)
Q Consensus 93 ~~aTIVeV~s~DR-~GLLldivqaL~dLgLnI~KA~IS 129 (147)
.+-..++|...+. +|.|..+..+|.+.|++|..-..+
T Consensus 269 ~~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~ 306 (403)
T PRK08210 269 SNVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIF 306 (403)
T ss_pred CCcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEec
Confidence 4567778876665 999999999999999999987554
No 161
>PF09904 HTH_43: Winged helix-turn helix; InterPro: IPR017162 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 3KE2_B.
Probab=21.10 E-value=1e+02 Score=23.14 Aligned_cols=31 Identities=23% Similarity=0.370 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEE
Q 032116 108 ALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAI 141 (147)
Q Consensus 108 LLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyV 141 (147)
-++|+.++|.++|+.+..-. +|++-.+-+|-
T Consensus 37 T~Qd~i~aL~~~~I~~~Fvq---~G~R~~~GyY~ 67 (90)
T PF09904_consen 37 TIQDTIKALPELGIECEFVQ---DGERNNAGYYR 67 (90)
T ss_dssp HHHHHHHGGGGGT-EEEEE-----TTS-S--EEE
T ss_pred HHHHHHHHhhcCCeEEEEEe---cCccCCCCcEE
Confidence 47899999999998887655 89988888885
No 162
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=20.70 E-value=1.8e+02 Score=19.35 Aligned_cols=35 Identities=9% Similarity=0.130 Sum_probs=25.6
Q ss_pred HHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032116 109 LLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 145 (147)
Q Consensus 109 LldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD~d 145 (147)
+-++.+.|+..|+.+...... ..|..-.|||.|.+
T Consensus 68 ~~~~~~~l~~~G~~~~~~~~~--~~~g~~~~~~~DP~ 102 (112)
T cd07238 68 VDAALARAVAAGFAIVYGPTD--EPWGVRRFFVRDPF 102 (112)
T ss_pred HHHHHHHHHhcCCeEecCCcc--CCCceEEEEEECCC
Confidence 557788899999998764332 33556689999875
Done!