Query 032116
Match_columns 147
No_of_seqs 103 out of 137
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 15:48:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032116.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032116hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nyi_A Unknown protein; protei 98.3 1.6E-06 5.3E-11 66.5 6.3 54 90-143 88-143 (195)
2 1u8s_A Glycine cleavage system 98.1 5.9E-06 2E-10 62.3 7.0 55 89-143 87-145 (192)
3 2ko1_A CTR148A, GTP pyrophosph 97.6 0.00018 6.2E-09 46.7 6.7 46 95-140 5-50 (88)
4 1zpv_A ACT domain protein; str 97.4 0.00059 2E-08 45.0 7.4 41 95-135 5-45 (91)
5 1u8s_A Glycine cleavage system 97.3 0.00062 2.1E-08 51.1 7.2 49 95-143 6-54 (192)
6 2jhe_A Transcription regulator 97.1 0.00074 2.5E-08 47.6 5.4 36 98-133 3-38 (190)
7 2nyi_A Unknown protein; protei 96.9 0.0033 1.1E-07 48.0 7.4 48 95-142 5-52 (195)
8 3p96_A Phosphoserine phosphata 94.3 0.059 2E-06 44.1 5.3 41 95-135 12-52 (415)
9 2f1f_A Acetolactate synthase i 94.2 0.089 3.1E-06 40.5 5.8 36 97-132 5-40 (164)
10 3o1l_A Formyltetrahydrofolate 93.4 0.12 4E-06 43.2 5.5 36 96-131 23-58 (302)
11 2pc6_A Probable acetolactate s 93.3 0.16 5.4E-06 39.3 5.7 35 97-131 6-40 (165)
12 1y7p_A Hypothetical protein AF 92.7 0.099 3.4E-06 43.0 4.0 36 97-132 6-41 (223)
13 2f06_A Conserved hypothetical 92.6 0.35 1.2E-05 34.3 6.3 34 96-129 73-106 (144)
14 3lou_A Formyltetrahydrofolate 92.6 0.18 6.1E-06 41.7 5.5 37 95-131 10-46 (292)
15 3nrb_A Formyltetrahydrofolate 92.6 0.25 8.4E-06 40.7 6.3 36 95-130 7-42 (287)
16 2f06_A Conserved hypothetical 92.4 0.44 1.5E-05 33.7 6.7 34 97-130 8-41 (144)
17 3n0v_A Formyltetrahydrofolate 92.3 0.23 7.7E-06 40.9 5.7 36 96-131 9-44 (286)
18 3obi_A Formyltetrahydrofolate 91.7 0.32 1.1E-05 40.0 6.1 36 96-131 7-42 (288)
19 1sc6_A PGDH, D-3-phosphoglycer 89.4 1 3.6E-05 38.3 7.3 62 77-141 316-377 (404)
20 2fgc_A Acetolactate synthase, 86.9 2.3 7.8E-05 33.9 7.4 34 96-129 30-63 (193)
21 3k5p_A D-3-phosphoglycerate de 85.0 2.8 9.5E-05 36.4 7.5 58 76-135 326-383 (416)
22 2qmx_A Prephenate dehydratase; 83.4 1.1 3.9E-05 36.9 4.3 48 94-141 199-247 (283)
23 2qmw_A PDT, prephenate dehydra 83.4 1.3 4.4E-05 36.4 4.5 49 93-141 184-236 (267)
24 3mwb_A Prephenate dehydratase; 80.1 1.9 6.4E-05 36.3 4.4 49 93-141 199-249 (313)
25 2re1_A Aspartokinase, alpha an 77.5 2.1 7.2E-05 31.4 3.6 36 94-129 24-60 (167)
26 3luy_A Probable chorismate mut 75.0 2.7 9.4E-05 35.5 4.1 39 103-141 216-255 (329)
27 2dt9_A Aspartokinase; protein- 70.6 2.8 9.7E-05 30.6 2.8 35 93-127 14-49 (167)
28 2dtj_A Aspartokinase; protein- 69.6 3.5 0.00012 30.7 3.1 37 93-129 13-50 (178)
29 2re1_A Aspartokinase, alpha an 69.0 7 0.00024 28.6 4.6 39 83-125 95-136 (167)
30 1phz_A Protein (phenylalanine 67.7 2.7 9.1E-05 37.3 2.4 54 88-141 27-81 (429)
31 3p96_A Phosphoserine phosphata 63.5 26 0.00088 28.4 7.4 48 94-141 100-148 (415)
32 1ygy_A PGDH, D-3-phosphoglycer 57.0 42 0.0014 29.1 8.0 49 91-139 450-500 (529)
33 3mtj_A Homoserine dehydrogenas 55.4 11 0.00037 32.8 4.0 47 97-143 361-409 (444)
34 2dt9_A Aspartokinase; protein- 53.7 13 0.00046 27.0 3.7 38 84-125 88-128 (167)
35 2dtj_A Aspartokinase; protein- 50.6 18 0.0006 26.8 4.0 39 83-125 87-128 (178)
36 3rri_A Glyoxalase/bleomycin re 40.6 72 0.0024 20.6 5.9 39 107-145 79-119 (135)
37 1wj5_A Hypothetical protein (r 39.7 12 0.0004 28.4 1.5 34 106-145 77-110 (120)
38 3kol_A Oxidoreductase, glyoxal 35.5 79 0.0027 20.5 5.0 35 108-145 108-142 (156)
39 1lfd_A Ralgds; RAL, effector i 34.4 43 0.0015 23.9 3.7 37 84-122 7-43 (87)
40 3s1t_A Aspartokinase; ACT doma 34.0 31 0.001 25.9 3.1 34 94-127 15-49 (181)
41 3s1t_A Aspartokinase; ACT doma 33.8 46 0.0016 24.9 4.0 43 81-127 86-131 (181)
42 3zw5_A Glyoxalase domain-conta 31.7 54 0.0019 22.0 3.8 38 108-145 100-138 (147)
43 4go7_X Aspartokinase; transfer 30.7 37 0.0013 26.4 3.1 34 94-127 34-68 (200)
44 3ab4_A Aspartokinase; aspartat 30.7 1.3E+02 0.0044 25.2 6.6 36 94-129 263-299 (421)
45 4esb_A Transcriptional regulat 29.5 1E+02 0.0034 21.3 5.0 39 105-144 41-79 (115)
46 2l48_A N-acetylmuramoyl-L-alan 28.6 78 0.0027 22.5 4.3 39 101-144 24-62 (85)
47 3ey7_A Biphenyl-2,3-DIOL 1,2-d 27.9 75 0.0026 20.0 3.8 37 109-145 84-121 (133)
48 1rax_A Protein (RA-domain of R 27.1 81 0.0028 23.6 4.3 38 83-122 31-68 (115)
49 3hdp_A Glyoxalase-I; glutathio 25.6 1.3E+02 0.0046 19.1 4.9 37 109-145 88-124 (133)
50 3r6a_A Uncharacterized protein 25.1 1.6E+02 0.0054 20.1 5.4 34 109-145 76-109 (144)
51 3hhh_A Transcriptional regulat 24.4 1.3E+02 0.0044 20.9 4.8 39 105-144 45-83 (116)
52 3elk_A Putative transcriptiona 23.2 1.5E+02 0.0051 20.5 4.9 38 106-144 47-84 (117)
53 2dql_A PEX protein; circadian 22.0 1.4E+02 0.0047 20.6 4.5 40 105-144 55-94 (115)
54 2kii_A Putative uncharacterize 21.7 2.5E+02 0.0085 20.8 6.6 63 80-145 113-180 (181)
55 1rlf_A RLF, RLF-RBD; signal tr 21.6 1.3E+02 0.0045 21.5 4.4 37 84-122 9-46 (90)
56 4esf_A PADR-like transcription 20.7 1.3E+02 0.0044 20.9 4.2 39 105-144 43-81 (117)
57 2i7r_A Conserved domain protei 20.5 1.7E+02 0.0057 18.3 4.7 35 109-145 74-108 (118)
No 1
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=98.25 E-value=1.6e-06 Score=66.54 Aligned_cols=54 Identities=15% Similarity=0.091 Sum_probs=48.8
Q ss_pred CCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCC--CcceEEEEEec
Q 032116 90 DSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS--SGKHNKFAITK 143 (147)
Q Consensus 90 dss~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdG--d~~~DVFyVTD 143 (147)
+.....++++|...||+|++..|+++|.+.|+||..+...+++ ++..|.||++.
T Consensus 88 ~~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~ 143 (195)
T 2nyi_A 88 SPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGS 143 (195)
T ss_dssp CTTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEE
T ss_pred CCCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEE
Confidence 3445678999999999999999999999999999999999999 77889999864
No 2
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=98.13 E-value=5.9e-06 Score=62.25 Aligned_cols=55 Identities=15% Similarity=0.132 Sum_probs=46.3
Q ss_pred CCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCC----cceEEEEEec
Q 032116 89 LDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS----GKHNKFAITK 143 (147)
Q Consensus 89 Ndss~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd----~~~DVFyVTD 143 (147)
++.....+++.|...||+|+|.+++++|.+.|+||..++..|+++ +..|.||++.
T Consensus 87 ~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~ 145 (192)
T 1u8s_A 87 HQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAI 145 (192)
T ss_dssp CCCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEE
T ss_pred CccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEE
Confidence 355567789999999999999999999999999999999999984 5789999864
No 3
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=97.63 E-value=0.00018 Score=46.67 Aligned_cols=46 Identities=9% Similarity=0.004 Sum_probs=38.9
Q ss_pred ceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEE
Q 032116 95 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFA 140 (147)
Q Consensus 95 aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFy 140 (147)
.+.+.|...||+|+|.+++++|.+.|+||....+...++.+..+|-
T Consensus 5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~ 50 (88)
T 2ko1_A 5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLM 50 (88)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEE
T ss_pred EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEE
Confidence 4678899999999999999999999999999999887664444443
No 4
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=97.45 E-value=0.00059 Score=45.00 Aligned_cols=41 Identities=17% Similarity=0.200 Sum_probs=36.4
Q ss_pred ceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcc
Q 032116 95 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGK 135 (147)
Q Consensus 95 aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~ 135 (147)
-.++.|...||+|+|.+++++|.+.|.||......+..+.+
T Consensus 5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~ 45 (91)
T 1zpv_A 5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYF 45 (91)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEE
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEE
Confidence 35789999999999999999999999999999888876544
No 5
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=97.33 E-value=0.00062 Score=51.11 Aligned_cols=49 Identities=12% Similarity=0.152 Sum_probs=42.9
Q ss_pred ceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEec
Q 032116 95 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITK 143 (147)
Q Consensus 95 aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD 143 (147)
.-+|.|...||+|++..++++|.+.|+||..+.+.+.++++.=.|.|..
T Consensus 6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~ 54 (192)
T 1u8s_A 6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISG 54 (192)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEec
Confidence 3578999999999999999999999999999999987777766777643
No 6
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=97.13 E-value=0.00074 Score=47.63 Aligned_cols=36 Identities=19% Similarity=0.237 Sum_probs=33.8
Q ss_pred EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCC
Q 032116 98 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS 133 (147)
Q Consensus 98 VeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd 133 (147)
++|.+.||+|+|.|++++|.+.|.||....+.+.|.
T Consensus 3 ~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~g~ 38 (190)
T 2jhe_A 3 LEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGR 38 (190)
T ss_dssp EEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETTTE
T ss_pred EEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecCCE
Confidence 689999999999999999999999999999988854
No 7
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=96.88 E-value=0.0033 Score=47.98 Aligned_cols=48 Identities=23% Similarity=0.216 Sum_probs=41.6
Q ss_pred ceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEe
Q 032116 95 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAIT 142 (147)
Q Consensus 95 aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVT 142 (147)
-.+|.|...||+||...++.+|.++|+||..|.+.+.+++|.=.|.|.
T Consensus 5 ~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~ 52 (195)
T 2nyi_A 5 SFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVS 52 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEE
Confidence 358999999999999999999999999999999997666653377775
No 8
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=94.32 E-value=0.059 Score=44.14 Aligned_cols=41 Identities=12% Similarity=0.195 Sum_probs=37.0
Q ss_pred ceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcc
Q 032116 95 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGK 135 (147)
Q Consensus 95 aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~ 135 (147)
--|+.|...||+|+...+++.|.+.|.||.-..-...+++|
T Consensus 12 ~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f 52 (415)
T 3p96_A 12 SVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRL 52 (415)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEE
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEe
Confidence 45899999999999999999999999999998887777765
No 9
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=94.19 E-value=0.089 Score=40.48 Aligned_cols=36 Identities=19% Similarity=0.304 Sum_probs=32.4
Q ss_pred EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCC
Q 032116 97 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS 132 (147)
Q Consensus 97 IVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdG 132 (147)
.++|...||+|+|.+++++|++.|.||....+....
T Consensus 5 ~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~ 40 (164)
T 2f1f_A 5 ILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTD 40 (164)
T ss_dssp EEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECS
T ss_pred EEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecC
Confidence 578999999999999999999999999998887543
No 10
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=93.39 E-value=0.12 Score=43.20 Aligned_cols=36 Identities=22% Similarity=0.176 Sum_probs=33.4
Q ss_pred eEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC
Q 032116 96 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 131 (147)
Q Consensus 96 TIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTd 131 (147)
-|+.|...||+|+...+++.|.+.|+||....-..+
T Consensus 23 ~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d 58 (302)
T 3o1l_A 23 FRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSD 58 (302)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEec
Confidence 479999999999999999999999999999887765
No 11
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=93.26 E-value=0.16 Score=39.27 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=31.8
Q ss_pred EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC
Q 032116 97 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 131 (147)
Q Consensus 97 IVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTd 131 (147)
.+.|...||+|.|.+++++|++.|.||....+...
T Consensus 6 ~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t 40 (165)
T 2pc6_A 6 IISLLMENEAGALSRVAGLFSARGYNIESLSVAPT 40 (165)
T ss_dssp EEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEEC
T ss_pred EEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEec
Confidence 57899999999999999999999999999888643
No 12
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=92.68 E-value=0.099 Score=43.00 Aligned_cols=36 Identities=25% Similarity=0.311 Sum_probs=29.6
Q ss_pred EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCC
Q 032116 97 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS 132 (147)
Q Consensus 97 IVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdG 132 (147)
-++|...||+|+|.+++++|++.+.||...+..++.
T Consensus 6 tL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~ 41 (223)
T 1y7p_A 6 GLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIK 41 (223)
T ss_dssp EEEEEEECCTTHHHHHHHHCC----CEEEEEEEECC
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccc
Confidence 478999999999999999999999999999999865
No 13
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=92.59 E-value=0.35 Score=34.31 Aligned_cols=34 Identities=24% Similarity=0.288 Sum_probs=30.5
Q ss_pred eEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEE
Q 032116 96 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVF 129 (147)
Q Consensus 96 TIVeV~s~DR~GLLldivqaL~dLgLnI~KA~IS 129 (147)
.++-|.-.|+||.|..+.++|.+.|+||...+..
T Consensus 73 svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~ 106 (144)
T 2f06_A 73 DVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSF 106 (144)
T ss_dssp EEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEE
T ss_pred eEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEE
Confidence 5788888899999999999999999999876665
No 14
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=92.58 E-value=0.18 Score=41.75 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=33.5
Q ss_pred ceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC
Q 032116 95 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 131 (147)
Q Consensus 95 aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTd 131 (147)
--++.|...||+|+...+++.|.+.|+||....-.+|
T Consensus 10 ~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d 46 (292)
T 3lou_A 10 QFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDD 46 (292)
T ss_dssp EEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEec
Confidence 3589999999999999999999999999999887753
No 15
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=92.57 E-value=0.25 Score=40.73 Aligned_cols=36 Identities=25% Similarity=0.331 Sum_probs=32.8
Q ss_pred ceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEe
Q 032116 95 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFL 130 (147)
Q Consensus 95 aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~IST 130 (147)
--++.|...||+|+...+++.|.+.|+||....-.+
T Consensus 7 ~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~ 42 (287)
T 3nrb_A 7 QYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFN 42 (287)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeee
Confidence 358999999999999999999999999999888754
No 16
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=92.37 E-value=0.44 Score=33.75 Aligned_cols=34 Identities=15% Similarity=0.215 Sum_probs=29.9
Q ss_pred EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEe
Q 032116 97 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFL 130 (147)
Q Consensus 97 IVeV~s~DR~GLLldivqaL~dLgLnI~KA~IST 130 (147)
-+.|.-.||+|.|.++.+.|.+.|+||..-.+..
T Consensus 8 ~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~ 41 (144)
T 2f06_A 8 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAE 41 (144)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred EEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEe
Confidence 4667888999999999999999999999877753
No 17
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=92.28 E-value=0.23 Score=40.94 Aligned_cols=36 Identities=19% Similarity=0.087 Sum_probs=33.1
Q ss_pred eEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC
Q 032116 96 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 131 (147)
Q Consensus 96 TIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTd 131 (147)
-++.|...||+|+...+++.|.+.|+||....-.+|
T Consensus 9 ~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d 44 (286)
T 3n0v_A 9 WILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDD 44 (286)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeecc
Confidence 579999999999999999999999999998887754
No 18
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=91.75 E-value=0.32 Score=40.03 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=32.7
Q ss_pred eEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC
Q 032116 96 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 131 (147)
Q Consensus 96 TIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTd 131 (147)
-++.|...||+|+...+++.|.+.|+||....-.++
T Consensus 7 ~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d 42 (288)
T 3obi_A 7 YVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYND 42 (288)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeec
Confidence 589999999999999999999999999998877543
No 19
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=89.36 E-value=1 Score=38.32 Aligned_cols=62 Identities=15% Similarity=0.181 Sum_probs=46.7
Q ss_pred CCccCCCEEEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEE
Q 032116 77 TDTIPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAI 141 (147)
Q Consensus 77 ~~~~~~PrV~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyV 141 (147)
...+|.|.|.+-.. ...+++ +.-.|+||.+-.+.++|.+.|+||..-++.+.|+...=+.-|
T Consensus 316 ~~~vn~p~~~~~~~--~~~rl~-~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidv 377 (404)
T 1sc6_A 316 LSAVNFPEVSLPLH--GGRRLM-HIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDI 377 (404)
T ss_dssp TTBSSSCCCCCCCC--SSEEEE-EEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEE
T ss_pred cceecccccccCcC--CcceEE-EEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEc
Confidence 34567666654422 234444 777899999999999999999999999999988876555543
No 20
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=86.87 E-value=2.3 Score=33.89 Aligned_cols=34 Identities=18% Similarity=0.300 Sum_probs=31.0
Q ss_pred eEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEE
Q 032116 96 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVF 129 (147)
Q Consensus 96 TIVeV~s~DR~GLLldivqaL~dLgLnI~KA~IS 129 (147)
-.+.|...||+|.|..++.+|++-|+||..-.+.
T Consensus 30 ~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~ 63 (193)
T 2fgc_A 30 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVG 63 (193)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEE
T ss_pred EEEEEEECCCChHHHHHHHHHHHCCceEEEEEee
Confidence 4688899999999999999999999999987775
No 21
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=85.02 E-value=2.8 Score=36.35 Aligned_cols=58 Identities=19% Similarity=0.221 Sum_probs=47.4
Q ss_pred CCCccCCCEEEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcc
Q 032116 76 DTDTIPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGK 135 (147)
Q Consensus 76 ~~~~~~~PrV~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~ 135 (147)
....+|.|.|.... .+...=+-+.-.|+||.|-.|.++|.+.|+||..=+-.|.|+..
T Consensus 326 ~~~~Vn~p~~~~~~--~~~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~ 383 (416)
T 3k5p_A 326 TVGAVNFPQVQLPP--RPTGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVG 383 (416)
T ss_dssp CTTBSSSCCCCCCC--CSSSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCE
T ss_pred CCceeeCCCcCCCC--CCCceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceE
Confidence 34567777776543 34556677888999999999999999999999999999999974
No 22
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=83.41 E-value=1.1 Score=36.93 Aligned_cols=48 Identities=13% Similarity=0.190 Sum_probs=35.6
Q ss_pred CceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEe-CCCcceEEEEE
Q 032116 94 DATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFL-DSSGKHNKFAI 141 (147)
Q Consensus 94 ~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~IST-dGd~~~DVFyV 141 (147)
+-|-+-+.-.|++|.|+++.+.|++.|+|..|=.=-- .+.-..=.|||
T Consensus 199 ~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~Ffv 247 (283)
T 2qmx_A 199 QKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYA 247 (283)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEE
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEE
Confidence 3566667777999999999999999999998743222 23334667877
No 23
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=83.37 E-value=1.3 Score=36.40 Aligned_cols=49 Identities=16% Similarity=0.194 Sum_probs=36.1
Q ss_pred CCceEEEEEe---CCcccHHHHHHHHHHhcCceEEEEEEEe-CCCcceEEEEE
Q 032116 93 PDATIVEITF---GDRLGALLDTMNALKNLGLNVVKANVFL-DSSGKHNKFAI 141 (147)
Q Consensus 93 ~~aTIVeV~s---~DR~GLLldivqaL~dLgLnI~KA~IST-dGd~~~DVFyV 141 (147)
.+-|-+-+.- .|++|.|+++.+.|++.|+|..|=.=-- .+.-..=.|||
T Consensus 184 ~~ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~Ffi 236 (267)
T 2qmw_A 184 QNATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFV 236 (267)
T ss_dssp SSCSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEE
T ss_pred CCeEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEE
Confidence 3556666777 8999999999999999999998743222 23334567777
No 24
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=80.13 E-value=1.9 Score=36.26 Aligned_cols=49 Identities=24% Similarity=0.363 Sum_probs=35.2
Q ss_pred CCceEEEEEeC-CcccHHHHHHHHHHhcCceEEEEEEEe-CCCcceEEEEE
Q 032116 93 PDATIVEITFG-DRLGALLDTMNALKNLGLNVVKANVFL-DSSGKHNKFAI 141 (147)
Q Consensus 93 ~~aTIVeV~s~-DR~GLLldivqaL~dLgLnI~KA~IST-dGd~~~DVFyV 141 (147)
.+-|-+-+.-. |++|.|+++.+.|++.|+|..|=.=-- .+.-..=.|||
T Consensus 199 ~~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~Ffi 249 (313)
T 3mwb_A 199 ADKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSI 249 (313)
T ss_dssp SEEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEE
T ss_pred CCeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEE
Confidence 34577777774 999999999999999999987643221 23333457777
No 25
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=77.46 E-value=2.1 Score=31.43 Aligned_cols=36 Identities=11% Similarity=0.134 Sum_probs=30.3
Q ss_pred CceEEEEEe-CCcccHHHHHHHHHHhcCceEEEEEEE
Q 032116 94 DATIVEITF-GDRLGALLDTMNALKNLGLNVVKANVF 129 (147)
Q Consensus 94 ~aTIVeV~s-~DR~GLLldivqaL~dLgLnI~KA~IS 129 (147)
+.+.|.|.. .|++|.+.++.++|.+.|++|.--..+
T Consensus 24 ~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s 60 (167)
T 2re1_A 24 NQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQN 60 (167)
T ss_dssp CCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC
T ss_pred CEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcC
Confidence 557788884 899999999999999999999875443
No 26
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=75.01 E-value=2.7 Score=35.47 Aligned_cols=39 Identities=15% Similarity=0.218 Sum_probs=28.6
Q ss_pred CCcccHHHHHHHHHHhcCceEEEEEEEe-CCCcceEEEEE
Q 032116 103 GDRLGALLDTMNALKNLGLNVVKANVFL-DSSGKHNKFAI 141 (147)
Q Consensus 103 ~DR~GLLldivqaL~dLgLnI~KA~IST-dGd~~~DVFyV 141 (147)
.|++|.|+++.+.|++.|+|..|=.=-- .+.-..=.|||
T Consensus 216 ~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~Ffi 255 (329)
T 3luy_A 216 VTGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIV 255 (329)
T ss_dssp CCSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEE
T ss_pred CCCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEE
Confidence 3899999999999999999987643221 23333556776
No 27
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=70.55 E-value=2.8 Score=30.65 Aligned_cols=35 Identities=20% Similarity=0.168 Sum_probs=28.8
Q ss_pred CCceEEEEEe-CCcccHHHHHHHHHHhcCceEEEEE
Q 032116 93 PDATIVEITF-GDRLGALLDTMNALKNLGLNVVKAN 127 (147)
Q Consensus 93 ~~aTIVeV~s-~DR~GLLldivqaL~dLgLnI~KA~ 127 (147)
.+.+.|.|.. .|++|.+..+.++|.+.|++|.--.
T Consensus 14 ~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~ 49 (167)
T 2dt9_A 14 LDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMII 49 (167)
T ss_dssp CSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEE
T ss_pred CCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEE
Confidence 3556666665 7999999999999999999998743
No 28
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=69.64 E-value=3.5 Score=30.70 Aligned_cols=37 Identities=16% Similarity=0.190 Sum_probs=30.3
Q ss_pred CCceEEEE-EeCCcccHHHHHHHHHHhcCceEEEEEEE
Q 032116 93 PDATIVEI-TFGDRLGALLDTMNALKNLGLNVVKANVF 129 (147)
Q Consensus 93 ~~aTIVeV-~s~DR~GLLldivqaL~dLgLnI~KA~IS 129 (147)
.+.+.|.| ...|++|.+.++.+.|.+.|++|.--..+
T Consensus 13 ~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s 50 (178)
T 2dtj_A 13 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQN 50 (178)
T ss_dssp CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEEC
T ss_pred CCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcC
Confidence 35677777 35899999999999999999998876554
No 29
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=69.01 E-value=7 Score=28.58 Aligned_cols=39 Identities=15% Similarity=0.124 Sum_probs=33.6
Q ss_pred CEEEEcCCCCCCceEEEEEeCC---cccHHHHHHHHHHhcCceEEE
Q 032116 83 PKVIIDLDSDPDATIVEITFGD---RLGALLDTMNALKNLGLNVVK 125 (147)
Q Consensus 83 PrV~IDNdss~~aTIVeV~s~D---R~GLLldivqaL~dLgLnI~K 125 (147)
..|.++ ++.++|.|...+ ++|.+..+.++|.+.|+||.-
T Consensus 95 ~~i~~~----~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~ 136 (167)
T 2re1_A 95 ASIDGD----DTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQM 136 (167)
T ss_dssp SEEEEE----SSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCE
T ss_pred ceEEec----CCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEE
Confidence 356654 468899999987 999999999999999999987
No 30
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=67.66 E-value=2.7 Score=37.28 Aligned_cols=54 Identities=13% Similarity=0.193 Sum_probs=38.1
Q ss_pred cCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEE-eCCCcceEEEEE
Q 032116 88 DLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVF-LDSSGKHNKFAI 141 (147)
Q Consensus 88 DNdss~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~IS-TdGd~~~DVFyV 141 (147)
++.+..+-|-+-+.-.|++|.|+++.+.|++.|+|+.|=.=- +.+.-..=.|||
T Consensus 27 e~~tg~dKTSLiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfV 81 (429)
T 1phz_A 27 DNSNQNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFT 81 (429)
T ss_dssp CCCCSSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEE
T ss_pred CCCCCCCeEEEEEEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCCccEEEEE
Confidence 344455667777777899999999999999999998753321 123333556776
No 31
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=63.46 E-value=26 Score=28.43 Aligned_cols=48 Identities=10% Similarity=0.012 Sum_probs=36.6
Q ss_pred CceEEEEEeCC-cccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEE
Q 032116 94 DATIVEITFGD-RLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAI 141 (147)
Q Consensus 94 ~aTIVeV~s~D-R~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyV 141 (147)
.--++.+.+.+ ++|++.++.++|.+.|+||....--++...+.=-|+|
T Consensus 100 ~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~~~~~~~~v 148 (415)
T 3p96_A 100 STHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGLELRV 148 (415)
T ss_dssp CSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSSSEEEEEEE
T ss_pred CcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCCceEEEEEe
Confidence 34467888888 9999999999999999999888777743333222555
No 32
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=57.04 E-value=42 Score=29.07 Aligned_cols=49 Identities=24% Similarity=0.242 Sum_probs=39.7
Q ss_pred CCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC--CCcceEEE
Q 032116 91 SDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD--SSGKHNKF 139 (147)
Q Consensus 91 ss~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTd--Gd~~~DVF 139 (147)
..+....+-|.-.||||.+-.+...|.+.|+||..-.|.-. |+..+=++
T Consensus 450 ~~~~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i 500 (529)
T 1ygy_A 450 LRAQGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILL 500 (529)
T ss_dssp EESCSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEE
T ss_pred ecCCccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEE
Confidence 55667778899999999999999999999999999999864 44443333
No 33
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Probab=55.45 E-value=11 Score=32.80 Aligned_cols=47 Identities=15% Similarity=0.128 Sum_probs=31.8
Q ss_pred EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC--CCcceEEEEEec
Q 032116 97 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD--SSGKHNKFAITK 143 (147)
Q Consensus 97 IVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTd--Gd~~~DVFyVTD 143 (147)
-+.+...||+|.|.+|+++|.+.|++|.+-.=.-. ++.......||.
T Consensus 361 y~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q~~~~~~~~~~~~v~~th 409 (444)
T 3mtj_A 361 YLRLRAFDRPGVLADITRILADSSISIDAMVQKEPAEGEEQVDIILLTH 409 (444)
T ss_dssp EEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEECC------CEEEEEEEC
T ss_pred EEEEEecCcccHHHHHHHHHHhcCCceeEEeecccccCCCCceEEEEec
Confidence 46677899999999999999999999976432111 122356666664
No 34
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=53.66 E-value=13 Score=26.98 Aligned_cols=38 Identities=21% Similarity=0.220 Sum_probs=31.8
Q ss_pred EEEEcCCCCCCceEEEEEeCC---cccHHHHHHHHHHhcCceEEE
Q 032116 84 KVIIDLDSDPDATIVEITFGD---RLGALLDTMNALKNLGLNVVK 125 (147)
Q Consensus 84 rV~IDNdss~~aTIVeV~s~D---R~GLLldivqaL~dLgLnI~K 125 (147)
.|.++ ++..+|.|...+ ++|.+..+.++|.+-|+||..
T Consensus 88 ~v~~~----~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~ 128 (167)
T 2dt9_A 88 EAILR----PDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEM 128 (167)
T ss_dssp EEEEE----CSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCE
T ss_pred cEEEe----CCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEE
Confidence 45554 577888888877 999999999999999999943
No 35
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=50.64 E-value=18 Score=26.81 Aligned_cols=39 Identities=21% Similarity=0.316 Sum_probs=32.4
Q ss_pred CEEEEcCCCCCCceEEEEEeC---CcccHHHHHHHHHHhcCceEEE
Q 032116 83 PKVIIDLDSDPDATIVEITFG---DRLGALLDTMNALKNLGLNVVK 125 (147)
Q Consensus 83 PrV~IDNdss~~aTIVeV~s~---DR~GLLldivqaL~dLgLnI~K 125 (147)
..|.++ ++..+|.|... +++|.+..+.++|.+.|+||.-
T Consensus 87 ~~v~~~----~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~ 128 (178)
T 2dtj_A 87 TNVLYD----DQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIEL 128 (178)
T ss_dssp SEEEEE----SCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCE
T ss_pred CeEEEe----CCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEE
Confidence 356664 46678888776 8999999999999999999987
No 36
>3rri_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-biology, midwest center for structu genomics; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=40.62 E-value=72 Score=20.55 Aligned_cols=39 Identities=10% Similarity=0.086 Sum_probs=30.5
Q ss_pred cHHHHHHHHHHhcCceEEEEEEEe-CC-CcceEEEEEeccc
Q 032116 107 GALLDTMNALKNLGLNVVKANVFL-DS-SGKHNKFAITKAY 145 (147)
Q Consensus 107 GLLldivqaL~dLgLnI~KA~IST-dG-d~~~DVFyVTD~d 145 (147)
.-|-++.+.|++.|+.+...-... .| .+..-.||+.|.+
T Consensus 79 ~d~~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~~~~DPd 119 (135)
T 3rri_A 79 KHFDNLYKLAKQRGIPFYHDLSRRFEGLIEEHETFFLIDPS 119 (135)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEEESTTSTTCEEEEEEECTT
T ss_pred HhHHHHHHHHHHcCCceecCcccccCCCCCceEEEEEECCC
Confidence 568899999999999998776664 33 3556689999876
No 37
>1wj5_A Hypothetical protein (riken cDNA 0610009H20); winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.4.5.59
Probab=39.75 E-value=12 Score=28.42 Aligned_cols=34 Identities=18% Similarity=0.300 Sum_probs=26.4
Q ss_pred ccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032116 106 LGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 145 (147)
Q Consensus 106 ~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD~d 145 (147)
+-++-+.++.|.+.|+.-+| .+..-++|||||+|
T Consensus 77 ~sifKeAi~~Lqe~G~VfqK------~~~~d~lYyVT~qD 110 (120)
T 1wj5_A 77 QRVFKNALQLLQEKGLVFQR------DSGSDKLYYVTTKD 110 (120)
T ss_dssp HHHHHHHHHHHHHHTSEECS------SCSSSCCBEECSSS
T ss_pred HHHHHHHHHHHHHCCEEEec------cCCccceEEeeccc
Confidence 45666999999999997765 33344799999987
No 38
>3kol_A Oxidoreductase, glyoxalase/bleomycin resistance protein/dioxygenase; metal ION binding, NYSGXRC, PSI2, structural genomics; 1.90A {Nostoc punctiforme pcc 73102}
Probab=35.47 E-value=79 Score=20.50 Aligned_cols=35 Identities=3% Similarity=-0.015 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032116 108 ALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 145 (147)
Q Consensus 108 LLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD~d 145 (147)
-|-++.+.|++.|..+...-....++ ..||+.|.+
T Consensus 108 d~~~~~~~l~~~G~~~~~~~~~~~~g---~~~~~~DPd 142 (156)
T 3kol_A 108 LFDRAVTVIGENKIAIAHGPVTRPTG---RGVYFYDPD 142 (156)
T ss_dssp GHHHHHHHHHHTTCCEEEEEEEC-CC---EEEEEECTT
T ss_pred HHHHHHHHHHHCCCccccCceecCCc---cEEEEECCC
Confidence 37888899999999998766554333 288899876
No 39
>1lfd_A Ralgds; RAL, effector interaction; HET: GNP; 2.10A {Rattus norvegicus} SCOP: d.15.1.5 PDB: 2b3a_A
Probab=34.36 E-value=43 Score=23.92 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=32.2
Q ss_pred EEEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCce
Q 032116 84 KVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLN 122 (147)
Q Consensus 84 rV~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgLn 122 (147)
||.+|++....|--|.|++.||--.+ |.++|.++||.
T Consensus 7 RVs~d~~~gn~YKSI~ltsqDrtp~v--I~~al~Khnl~ 43 (87)
T 1lfd_A 7 RVSLDVDNGNMYKSILVTSQDKAPTV--IRKAMDKHNLD 43 (87)
T ss_dssp EEEESSCSSEEEEEEEEETTCBHHHH--HHHHHHHTTCC
T ss_pred EEEEecCCCcEEEEEEEecCCCcHHH--HHHHHHHcCCC
Confidence 79999999999999999999997654 67889999986
No 40
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=33.96 E-value=31 Score=25.89 Aligned_cols=34 Identities=18% Similarity=0.174 Sum_probs=26.7
Q ss_pred CceEEEEE-eCCcccHHHHHHHHHHhcCceEEEEE
Q 032116 94 DATIVEIT-FGDRLGALLDTMNALKNLGLNVVKAN 127 (147)
Q Consensus 94 ~aTIVeV~-s~DR~GLLldivqaL~dLgLnI~KA~ 127 (147)
+.+.|.|. -.|++|.+..+.++|.+.|++|.--.
T Consensus 15 ~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~ 49 (181)
T 3s1t_A 15 SEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVL 49 (181)
T ss_dssp SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEE
T ss_pred CEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEE
Confidence 44455543 46999999999999999999997543
No 41
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=33.78 E-value=46 Score=24.91 Aligned_cols=43 Identities=16% Similarity=0.156 Sum_probs=34.2
Q ss_pred CCCEEEEcCCCCCCceEEEEEeC---CcccHHHHHHHHHHhcCceEEEEE
Q 032116 81 PTPKVIIDLDSDPDATIVEITFG---DRLGALLDTMNALKNLGLNVVKAN 127 (147)
Q Consensus 81 ~~PrV~IDNdss~~aTIVeV~s~---DR~GLLldivqaL~dLgLnI~KA~ 127 (147)
+.-.|.+++ +..+|.|-.. +++|.+..+.++|.+-|+||..-.
T Consensus 86 ~~~~v~~~~----~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Is 131 (181)
T 3s1t_A 86 GFSQLLYDD----HIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS 131 (181)
T ss_dssp CCSEEEEES----CEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred CcceEEEeC----CEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEE
Confidence 334566653 5677777665 899999999999999999998766
No 42
>3zw5_A Glyoxalase domain-containing protein 5; lyase; 1.60A {Homo sapiens}
Probab=31.66 E-value=54 Score=21.97 Aligned_cols=38 Identities=13% Similarity=0.113 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhcCceEEEEEEEeCCC-cceEEEEEeccc
Q 032116 108 ALLDTMNALKNLGLNVVKANVFLDSS-GKHNKFAITKAY 145 (147)
Q Consensus 108 LLldivqaL~dLgLnI~KA~ISTdGd-~~~DVFyVTD~d 145 (147)
-|-++.+.|++.|+.+...-+...|. ...-.||+.|.+
T Consensus 100 dl~~~~~~l~~~G~~~~~~p~~~~~~~g~~~~~~~~DPd 138 (147)
T 3zw5_A 100 PLEEMIQHLKACDVPIEEGPVPRTGAKGPIMSIYFRDPD 138 (147)
T ss_dssp CHHHHHHHHHHTTCCCCEEEEEEEETTEEEEEEEEECTT
T ss_pred CHHHHHHHHHHcCCceeeCcccccCCCCceEEEEEECCC
Confidence 47788889999999998766654443 445689999976
No 43
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=30.74 E-value=37 Score=26.45 Aligned_cols=34 Identities=18% Similarity=0.174 Sum_probs=27.0
Q ss_pred CceEEEEE-eCCcccHHHHHHHHHHhcCceEEEEE
Q 032116 94 DATIVEIT-FGDRLGALLDTMNALKNLGLNVVKAN 127 (147)
Q Consensus 94 ~aTIVeV~-s~DR~GLLldivqaL~dLgLnI~KA~ 127 (147)
+.+.|.|. -.|++|.+..+-++|.+.|+||..=.
T Consensus 34 ~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~ 68 (200)
T 4go7_X 34 SEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVL 68 (200)
T ss_dssp SEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEE
T ss_pred CEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEe
Confidence 34455554 37999999999999999999998753
No 44
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=30.67 E-value=1.3e+02 Score=25.17 Aligned_cols=36 Identities=17% Similarity=0.199 Sum_probs=29.9
Q ss_pred CceEEEEE-eCCcccHHHHHHHHHHhcCceEEEEEEE
Q 032116 94 DATIVEIT-FGDRLGALLDTMNALKNLGLNVVKANVF 129 (147)
Q Consensus 94 ~aTIVeV~-s~DR~GLLldivqaL~dLgLnI~KA~IS 129 (147)
+.+.|.|. -.|++|.+.++.+.|.+.|++|.--..+
T Consensus 263 ~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~ 299 (421)
T 3ab4_A 263 SEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQN 299 (421)
T ss_dssp SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEEC
T ss_pred CEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEcc
Confidence 45677777 5899999999999999999999865443
No 45
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=29.52 E-value=1e+02 Score=21.32 Aligned_cols=39 Identities=13% Similarity=0.069 Sum_probs=28.2
Q ss_pred cccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEecc
Q 032116 105 RLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKA 144 (147)
Q Consensus 105 R~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD~ 144 (147)
.+|.||-+.+-|.+-||....-. ..+++.-.-.|.+|+.
T Consensus 41 s~gtlY~~L~rLe~~GlI~~~~~-~~~~g~~rk~Y~LT~~ 79 (115)
T 4esb_A 41 SEGSIYPLLLRMQKEKLIEGTLK-ASSLGPKRKYYHITDK 79 (115)
T ss_dssp CHHHHHHHHHHHHHTTSEEEEEE-ECTTSCEEEEEEECHH
T ss_pred CcChHHHHHHHHHHCCCeEEEee-ecCCCCCcEEEEECHH
Confidence 47999999999999999655433 3344455556778874
No 46
>2l48_A N-acetylmuramoyl-L-alanine amidase; bacillus anthracis gamma- phage endolysin, PLYG, cell WALL B domain, homodimer, ACT-type domain; NMR {Bacillus phage gamma}
Probab=28.60 E-value=78 Score=22.46 Aligned_cols=39 Identities=28% Similarity=0.296 Sum_probs=29.3
Q ss_pred EeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEecc
Q 032116 101 TFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKA 144 (147)
Q Consensus 101 ~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD~ 144 (147)
+.+=-+.++.|++++|.++|. +|+|-++++.. .|.+||.
T Consensus 24 TGgfg~~~v~ev~~am~~~g~---~gkii~~~dGl--~y~~T~~ 62 (85)
T 2l48_A 24 SGAFSPYETPDVMGALTSLKM---TADFILQSDGL--TYFISKP 62 (85)
T ss_dssp ECCBCTTTHHHHHHHHHHTTC---CEEEEECTTSC--EEEEECC
T ss_pred ecccCHHHHHHHHHHHHHcCc---eEEEEECCCce--EEEEeCC
Confidence 344456789999999999998 78888887643 4557763
No 47
>3ey7_A Biphenyl-2,3-DIOL 1,2-dioxygenase III-related protein; integron cassette protein mobIle metagenome structural genomics, oxidoreductase, PSI-2; HET: MSE; 1.60A {Vibrio cholerae} PDB: 3ey8_A*
Probab=27.90 E-value=75 Score=19.99 Aligned_cols=37 Identities=19% Similarity=0.336 Sum_probs=28.0
Q ss_pred HHHHHHHHHhcCceEEEEEEEeCCC-cceEEEEEeccc
Q 032116 109 LLDTMNALKNLGLNVVKANVFLDSS-GKHNKFAITKAY 145 (147)
Q Consensus 109 LldivqaL~dLgLnI~KA~ISTdGd-~~~DVFyVTD~d 145 (147)
|-++.+.|++.|+.+...-....+. ...-.||+.|.+
T Consensus 84 ~~~~~~~l~~~G~~~~~~~~~~~~~~g~~~~~~~~DPd 121 (133)
T 3ey7_A 84 LSDAMKHVEDQGVTIMEGPVKRTGAQGAITSFYFRDPD 121 (133)
T ss_dssp HHHHHHHHHHTTCCCCEEEEEEEETTEEEEEEEEECTT
T ss_pred HHHHHHHHHHCCCccccCCccccCCCCCeEEEEEECCC
Confidence 7888899999999998765544333 445688999876
No 48
>1rax_A Protein (RA-domain of RAL guanosine dissociation stimulator); RAS-binding domain, ralgef, ralgds, RAS; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=27.07 E-value=81 Score=23.56 Aligned_cols=38 Identities=21% Similarity=0.249 Sum_probs=32.9
Q ss_pred CEEEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCce
Q 032116 83 PKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLN 122 (147)
Q Consensus 83 PrV~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgLn 122 (147)
-||.+|++....|--|.|...||--.+ |.++|.++||.
T Consensus 31 IRVs~d~~~gn~YKSIlltsqDktp~V--I~raL~Khnl~ 68 (115)
T 1rax_A 31 IRVSLDVDNGNMYKSILVTSQDKAPAV--IRKAMDKHNLE 68 (115)
T ss_dssp EEEEESSSSCCCCEEEEEETTCCHHHH--HHHHHHHHTCT
T ss_pred EEEEEecCCCcEEEEEEEecCCCcHHH--HHHHHHHcCCC
Confidence 489999999999999999999997654 67888888886
No 49
>3hdp_A Glyoxalase-I; glutathione,lyase, methylglyoxal,11003P,PSI2, structural GENOMIC,NYSGXRC., structural genomics; 2.06A {Clostridium acetobutylicum} PDB: 2qh0_A
Probab=25.61 E-value=1.3e+02 Score=19.07 Aligned_cols=37 Identities=5% Similarity=0.142 Sum_probs=26.5
Q ss_pred HHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032116 109 LLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 145 (147)
Q Consensus 109 LldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD~d 145 (147)
+-++.+.|++.|+.+...-....+.+-.-.+|+.|.+
T Consensus 88 i~~~~~~l~~~G~~~~~~p~~~~~~~g~~~~~~~dPd 124 (133)
T 3hdp_A 88 IQKSIEEMSQIGYTLFKKAEIAPAIDNRKVAFLFSTD 124 (133)
T ss_dssp HHHHHHHHTTTTEEEEEEEEEEGGGTTEEEEEEEETT
T ss_pred HHHHHHHHHHcCCccccCCeecccCCCceEEEEECCC
Confidence 6778899999999987753333344445678898875
No 50
>3r6a_A Uncharacterized protein; PSI biology, structural genomics, NEW YORK structural genomi research consortium, putative glyoxalase I; 1.76A {Methanosarcina mazei}
Probab=25.13 E-value=1.6e+02 Score=20.06 Aligned_cols=34 Identities=9% Similarity=0.167 Sum_probs=26.1
Q ss_pred HHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032116 109 LLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 145 (147)
Q Consensus 109 LldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD~d 145 (147)
+-++.+.|++.|..|...-.....+ -.||+.|.+
T Consensus 76 ~d~~~~~l~~~G~~v~~~p~~~~~G---~~~~~~DPd 109 (144)
T 3r6a_A 76 LDKFKTFLEENGAEIIRGPSKVPTG---RNMTVRHSD 109 (144)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEETTE---EEEEEECTT
T ss_pred HHHHHHHHHHcCCEEecCCccCCCc---eEEEEECCC
Confidence 6778899999999998776554433 468999876
No 51
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=24.36 E-value=1.3e+02 Score=20.91 Aligned_cols=39 Identities=8% Similarity=0.089 Sum_probs=27.1
Q ss_pred cccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEecc
Q 032116 105 RLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKA 144 (147)
Q Consensus 105 R~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD~ 144 (147)
.+|.||-+.+-|.+-||....-. .++++.-.-.|.||+.
T Consensus 45 s~gtlY~~L~rLe~~GlI~~~~~-~~~~g~~rk~Y~lT~~ 83 (116)
T 3hhh_A 45 VEGTVYTILLRLEKNQWVIAEKK-PSEKGPMRKFYRLTSS 83 (116)
T ss_dssp CHHHHHHHHHHHHHTTSEEEEEE-ECC--CEEEEEEECHH
T ss_pred CccHHHHHHHHHHHCCCEEEEee-ecCCCCCceEEEECHH
Confidence 47999999999999999655433 3344444556778874
No 52
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=23.16 E-value=1.5e+02 Score=20.54 Aligned_cols=38 Identities=18% Similarity=0.344 Sum_probs=27.1
Q ss_pred ccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEecc
Q 032116 106 LGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKA 144 (147)
Q Consensus 106 ~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD~ 144 (147)
+|.||-+.+.|.+-||....-.. .+++.-.-.|.+|+.
T Consensus 47 ~gtly~~L~~Le~~GlI~~~~~~-~~~~~~rk~Y~lT~~ 84 (117)
T 3elk_A 47 QGSIYILLKTMKERGFVISESSV-NEKGQQLTVYHITDA 84 (117)
T ss_dssp TTHHHHHHHHHHHHTSEEEEEEE-C-CCCEEEEEEECHH
T ss_pred cchHHHHHHHHHHCCCEEEEeee-cCCCCCceEEEECHH
Confidence 59999999999999996655432 344445556778864
No 53
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=21.95 E-value=1.4e+02 Score=20.59 Aligned_cols=40 Identities=5% Similarity=-0.025 Sum_probs=28.5
Q ss_pred cccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEecc
Q 032116 105 RLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKA 144 (147)
Q Consensus 105 R~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD~ 144 (147)
..|.||-+.+-|.+-|+....-....+++.-.-.|.+|+.
T Consensus 55 s~gtLY~~L~rLe~~GlI~~~~~~~~~~~~~rk~Y~LT~~ 94 (115)
T 2dql_A 55 SDTVLYSAIKFLEDNRAITGYWKKLEGRGRPRRMYQVSPE 94 (115)
T ss_dssp CHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEECGG
T ss_pred CcchHHHHHHHHHHCCCEEEEeeecCCCCCCcEEEEECHH
Confidence 4699999999999999965443222134555677888875
No 54
>2kii_A Putative uncharacterized protein; H-NOX, unknown function; HET: HEM; NMR {Shewanella oneidensis} PDB: 2kil_A*
Probab=21.73 E-value=2.5e+02 Score=20.79 Aligned_cols=63 Identities=13% Similarity=0.185 Sum_probs=40.9
Q ss_pred cCCCEEEEcCCCCCCceEEEEEeCCcc-----cHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032116 80 IPTPKVIIDLDSDPDATIVEITFGDRL-----GALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 145 (147)
Q Consensus 80 ~~~PrV~IDNdss~~aTIVeV~s~DR~-----GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD~d 145 (147)
+.+|...+...++ +.-++.-.+..+. |+|..+++-+ +..+.|.......+| .-..+|.|+-.+
T Consensus 113 ~~~Psf~~~~~~~-~~l~l~Y~S~R~l~~~~~Gli~~~A~~f-~~~v~i~~~~~~~~~-~~h~~f~i~~~~ 180 (181)
T 2kii_A 113 PSLPHINGQLLPN-NQIALRYSSPRRLCFCAEGLLFGAAQHF-QQKIQISHDTCMHTG-ADHCMLIIELQN 180 (181)
T ss_dssp SCCCEEEEEECSS-SEEEEEEECTTCCHHHHHHHHHHHHHHT-TCCEEEEEEECGGGT-CSSEEEEEEECC
T ss_pred CCCCeeEEEECCC-CEEEEEEecCCChHHHHHHHHHHHHHHh-CCCeEEEEEeeccCC-CCEEEEEEEecC
Confidence 6788888877653 3333555555443 7777777777 667777655554454 458899998543
No 55
>1rlf_A RLF, RLF-RBD; signal transduction protein; NMR {Mus musculus} SCOP: d.15.1.5
Probab=21.62 E-value=1.3e+02 Score=21.51 Aligned_cols=37 Identities=16% Similarity=0.215 Sum_probs=29.7
Q ss_pred EEEEcC-CCCCCceEEEEEeCCcccHHHHHHHHHHhcCce
Q 032116 84 KVIIDL-DSDPDATIVEITFGDRLGALLDTMNALKNLGLN 122 (147)
Q Consensus 84 rV~IDN-dss~~aTIVeV~s~DR~GLLldivqaL~dLgLn 122 (147)
||.+|+ +....|--|.|++.||--.+ |.++|.++||.
T Consensus 9 RVs~e~~~~Gn~YKSIlltsqDktp~v--I~~al~Khnl~ 46 (90)
T 1rlf_A 9 RVQMELGEDGSVYKSILVTSQDKAPSV--ISRVLKKNNRD 46 (90)
T ss_dssp EEEECCSSSCCSCCEEEEETTCCCTTH--HHHHHHHTTTT
T ss_pred EEEEEeCCCCceEEEEEEecCCCcHHH--HHHHHHHcCCC
Confidence 788885 77788889999999997655 56788888875
No 56
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=20.72 E-value=1.3e+02 Score=20.85 Aligned_cols=39 Identities=13% Similarity=0.169 Sum_probs=25.8
Q ss_pred cccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEecc
Q 032116 105 RLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKA 144 (147)
Q Consensus 105 R~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD~ 144 (147)
.+|.||-+.+-|.+-||....-.. .+++.-.-.|.+|+.
T Consensus 43 s~gtlY~~L~rLe~~GlI~~~~~~-~~~g~~rk~Y~LT~~ 81 (117)
T 4esf_A 43 VEGTVYTILVRLEKKKLVNIEKKP-SDMGPPRKFYSLNEA 81 (117)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEEC------CEEEEEECHH
T ss_pred CccHHHHHHHHHHHCCCEEEEeec-CCCCCCceEEEECHH
Confidence 479999999999999996554332 234444556778864
No 57
>2i7r_A Conserved domain protein; structural genomics conserved domain, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae} SCOP: d.32.1.2
Probab=20.46 E-value=1.7e+02 Score=18.31 Aligned_cols=35 Identities=11% Similarity=0.195 Sum_probs=25.9
Q ss_pred HHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032116 109 LLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 145 (147)
Q Consensus 109 LldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD~d 145 (147)
+-++.+.|++.|..+...-... .|-.-.||+.|.+
T Consensus 74 ~~~~~~~l~~~G~~~~~~~~~~--~~g~~~~~~~DPd 108 (118)
T 2i7r_A 74 VDQNYKRLNELGIKVLHGPTVT--DWGTESLLVQGPA 108 (118)
T ss_dssp HHHHHHHHHHHTCCEEEEEEEC--TTSCEEEEEECGG
T ss_pred HHHHHHHHHHCCCceecCCccc--cCccEEEEEECCC
Confidence 7788899999999986654433 2445578899876
Done!