BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032117
(147 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TQ1|A Chain A, Solution Structure Of At5g66040, A Putative Protein From
Arabidosis Thaliana
Length = 129
Score = 107 bits (268), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/72 (70%), Positives = 58/72 (80%)
Query: 71 VPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEV 130
VP+SV V VAH+LL AGHRYLDVRTPEEFS GHA GAINVPYM R SGM+KN F+E+V
Sbjct: 16 VPSSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNTDFLEQV 75
Query: 131 STRFRKHDEIIV 142
S+ F + D IIV
Sbjct: 76 SSHFGQSDNIIV 87
>pdb|2JTQ|A Chain A, Rhodanese From E.Coli
pdb|2JTR|A Chain A, Rhodanese Persulfide From E. Coli
pdb|2JTS|A Chain A, Rhodanese With Anions From E. Coli
Length = 85
Score = 33.5 bits (75), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 90 YLDVRTPEEFSAGHATGAINVP 111
++DVR PE++ H GAIN+P
Sbjct: 4 WIDVRVPEQYQQEHVQGAINIP 25
>pdb|1YT8|A Chain A, Crystal Structure Of Thiosulfate Sulfurtransferase From
Pseudomonas Aeruginosa
Length = 539
Score = 33.5 bits (75), Expect = 0.049, Method: Composition-based stats.
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 91 LDVRTPEEFSAGHATGAINVP 111
LDVRTPEE+ AGH G+ + P
Sbjct: 286 LDVRTPEEYEAGHLPGSRSTP 306
>pdb|3R2U|A Chain A, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|B Chain B, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|C Chain C, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|D Chain D, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
Length = 466
Score = 30.4 bits (67), Expect = 0.35, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 91 LDVRTPEEFSAGHATGAINVPY 112
D+R+ E + GH G IN+PY
Sbjct: 300 FDLRSKEAYHGGHIEGTINIPY 321
Score = 26.9 bits (58), Expect = 4.2, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 91 LDVRTPEEFSAGHATGAINVPY 112
LDVR E++ GH + A++VP+
Sbjct: 391 LDVRNDNEWNNGHLSQAVHVPH 412
>pdb|3D1P|A Chain A, Atomic Resolution Structure Of Uncharacterized Protein
From Saccharomyces Cerevisiae
Length = 139
Score = 29.6 bits (65), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 91 LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEV 130
+DVR P E+S H +INVPY + L+F +++
Sbjct: 44 VDVREPSEYSIVHIPASINVPYRSHPDAFALDPLEFEKQI 83
>pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICR|B Chain B, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICS|A Chain A, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICS|B Chain B, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICT|A Chain A, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
pdb|3ICT|B Chain B, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
Length = 588
Score = 29.3 bits (64), Expect = 0.90, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 83 LLQAGHRYLDVRTPEEFSAGHATGAINVP 111
+++ G +DVR P E G G+IN+P
Sbjct: 499 IVENGGYLIDVREPNELKQGXIKGSINIP 527
>pdb|3AAY|A Chain A, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase Cysa3 (Rv3117) From Mycobacterium
Tuberculosis: Orthorhombic Form
pdb|3AAY|B Chain B, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase Cysa3 (Rv3117) From Mycobacterium
Tuberculosis: Orthorhombic Form
Length = 277
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 16/38 (42%)
Query: 91 LDVRTPEEFSA----------------GHATGAINVPY 112
+DVR+P+EFS GH GAINVP+
Sbjct: 161 IDVRSPDEFSGKILAPAHLPQEQSQRPGHIPGAINVPW 198
>pdb|3HWI|A Chain A, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase Cysa2 (Rhodanese-Like Protein) From
Mycobacterium Tuberculosis
pdb|3HWI|B Chain B, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase Cysa2 (Rhodanese-Like Protein) From
Mycobacterium Tuberculosis
Length = 298
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 16/38 (42%)
Query: 91 LDVRTPEEFSA----------------GHATGAINVPY 112
+DVR+P+EFS GH GAINVP+
Sbjct: 182 IDVRSPDEFSGKILAPAHLPQEQSQRPGHIPGAINVPW 219
>pdb|3AAX|A Chain A, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase Cysa3 (Rv3117) From Mycobacterium
Tuberculosis: Monoclinic Form
pdb|3AAX|B Chain B, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase Cysa3 (Rv3117) From Mycobacterium
Tuberculosis: Monoclinic Form
Length = 277
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 16/38 (42%)
Query: 91 LDVRTPEEFSA----------------GHATGAINVPY 112
+DVR+P+EFS GH GAINVP+
Sbjct: 161 IDVRSPDEFSGKILAPAHLPQEQSQRPGHIPGAINVPW 198
>pdb|3TP9|A Chain A, Crystal Structure Of Alicyclobacillus Acidocaldarius
Protein With Beta-Lactamase And Rhodanese Domains
pdb|3TP9|B Chain B, Crystal Structure Of Alicyclobacillus Acidocaldarius
Protein With Beta-Lactamase And Rhodanese Domains
Length = 474
Score = 28.1 bits (61), Expect = 1.9, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 66 LEAVGVPTSV---PVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPY 112
L +G P V P RV + G LDVR + F+ H G++N+P+
Sbjct: 264 LAELGAPERVDLPPERV--RAWREGGVVLDVRPADAFAKRHLAGSLNIPW 311
Score = 26.9 bits (58), Expect = 4.0, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 76 PVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVP 111
P V L Q G LDVR +E++ GH A ++P
Sbjct: 378 PDEVRGALAQQGLWLLDVRNVDEWAGGHLPQAHHIP 413
>pdb|3NTA|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase
pdb|3NTA|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase
Length = 574
Score = 28.1 bits (61), Expect = 2.0, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 91 LDVRTPEEFSAGHATGAINVP 111
LDVR P E G GA+N+P
Sbjct: 490 LDVRNPGELQNGGLEGAVNIP 510
>pdb|3NT6|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C43sC531S DOUBLE MUTANT
pdb|3NT6|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C43sC531S DOUBLE MUTANT
Length = 574
Score = 28.1 bits (61), Expect = 2.0, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 91 LDVRTPEEFSAGHATGAINVP 111
LDVR P E G GA+N+P
Sbjct: 490 LDVRNPGELQNGGLEGAVNIP 510
>pdb|1GN0|A Chain A, Escherichia Coli Glpe Sulfurtransferase Soaked With Kcn
Length = 108
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 75 VPVRVAHELLQAGHRYL-DVRTPEEFSAGHATGAINV 110
+ V AH+ LQ L D+R P+ F+ GHA A ++
Sbjct: 7 INVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHL 43
>pdb|1GMX|A Chain A, Escherichia Coli Glpe Sulfurtransferase
Length = 108
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 75 VPVRVAHELLQAGHRYL-DVRTPEEFSAGHATGAINV 110
+ V AH+ LQ L D+R P+ F+ GHA A ++
Sbjct: 7 INVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHL 43
>pdb|3NTD|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
pdb|3NTD|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
Length = 565
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 91 LDVRTPEEFSAGHATGAINVP 111
LDVR P E G GA+N+P
Sbjct: 490 LDVRNPGELQNGGLEGAVNIP 510
>pdb|1C25|A Chain A, Human Cdc25a Catalytic Domain
Length = 161
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 91 LDVRTPEEFSAGHATGAINV 110
+D R P E+ GH GA+N+
Sbjct: 48 IDCRYPYEYEGGHIKGAVNL 67
>pdb|2O3J|A Chain A, Structure Of Caenorhabditis Elegans Udp-Glucose
Dehydrogenase
pdb|2O3J|B Chain B, Structure Of Caenorhabditis Elegans Udp-Glucose
Dehydrogenase
pdb|2O3J|C Chain C, Structure Of Caenorhabditis Elegans Udp-Glucose
Dehydrogenase
Length = 481
Score = 26.6 bits (57), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 107 AINVPY-MYRVGSGMTKNLKFVEEVS 131
++N P MY G GM +LK+VE VS
Sbjct: 93 SVNTPTKMYGRGKGMAPDLKYVESVS 118
>pdb|3C01|E Chain E, Crystal Structural Of Native Spas C-Terminal Domain
pdb|3C01|F Chain F, Crystal Structural Of Native Spas C-Terminal Domain
pdb|3C01|G Chain G, Crystal Structural Of Native Spas C-Terminal Domain
pdb|3C01|H Chain H, Crystal Structural Of Native Spas C-Terminal Domain
Length = 98
Score = 26.6 bits (57), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 61 SLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFS 100
++R E VGVP V +++A L + RY D+ + EE
Sbjct: 31 AVRAYAEKVGVPVIVDIKLARSLFKTHRRY-DLVSLEEID 69
>pdb|3FOZ|A Chain A, Structure Of E. Coli Isopentenyl-Trna Transferase In
Complex With E. Coli Trna(Phe)
pdb|3FOZ|B Chain B, Structure Of E. Coli Isopentenyl-Trna Transferase In
Complex With E. Coli Trna(Phe)
pdb|2ZXU|A Chain A, Crystal Structure Of Trna Modification Enzyme Miaa In The
Complex With Trna(Phe) And Dmaspp
pdb|2ZXU|B Chain B, Crystal Structure Of Trna Modification Enzyme Miaa In The
Complex With Trna(Phe) And Dmaspp
Length = 316
Score = 26.6 bits (57), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 80 AHELLQAGHRYLDVRTPEE-FSAG 102
A ELL A HR LD+R P + +SA
Sbjct: 59 AEELLAAPHRLLDIRDPSQAYSAA 82
>pdb|2ZM5|A Chain A, Crystal Structure Of Trna Modification Enzyme Miaa In The
Complex With Trna(Phe)
pdb|2ZM5|B Chain B, Crystal Structure Of Trna Modification Enzyme Miaa In The
Complex With Trna(Phe)
Length = 316
Score = 26.2 bits (56), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 80 AHELLQAGHRYLDVRTPEE-FSAG 102
A ELL A HR LD+R P + +SA
Sbjct: 59 AEELLAAPHRLLDIRDPSQAYSAA 82
>pdb|3L2K|A Chain A, Structure Of Phenazine Antibiotic Biosynthesis Protein
With Substrate
pdb|3L2K|B Chain B, Structure Of Phenazine Antibiotic Biosynthesis Protein
With Substrate
Length = 366
Score = 26.2 bits (56), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 43 CDNIGFISSKILSFCPKASLRGNLEAVGVPTSV 75
D I FI+S+IL C ++ G+ A+GV S+
Sbjct: 242 LDEIKFIASEILPDCEFSASYGSTSALGVSRSL 274
>pdb|3HGU|A Chain A, Structure Of Phenazine Antibiotic Biosynthesis Protein
pdb|3HGU|B Chain B, Structure Of Phenazine Antibiotic Biosynthesis Protein
Length = 369
Score = 26.2 bits (56), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 43 CDNIGFISSKILSFCPKASLRGNLEAVGVPTSV 75
D I FI+S+IL C ++ G+ A+GV S+
Sbjct: 245 LDEIKFIASEILPDCEFSASYGSTSALGVSRSL 277
>pdb|3HGV|A Chain A, Structure Of Phenazine Antibiotic Biosynthesis Protein
pdb|3HGV|B Chain B, Structure Of Phenazine Antibiotic Biosynthesis Protein
Length = 369
Score = 26.2 bits (56), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 43 CDNIGFISSKILSFCPKASLRGNLEAVGVPTSV 75
D I FI+S+IL C ++ G+ A+GV S+
Sbjct: 245 LDEIKFIASEILPDCEFSASYGSTSALGVSRSL 277
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,661,022
Number of Sequences: 62578
Number of extensions: 130316
Number of successful extensions: 346
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 322
Number of HSP's gapped (non-prelim): 28
length of query: 147
length of database: 14,973,337
effective HSP length: 90
effective length of query: 57
effective length of database: 9,341,317
effective search space: 532455069
effective search space used: 532455069
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)