BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032117
(147 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q38853|STR15_ARATH Rhodanese-like domain-containing protein 15, chloroplastic
OS=Arabidopsis thaliana GN=STR15 PE=2 SV=1
Length = 182
Score = 131 bits (329), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/150 (50%), Positives = 94/150 (62%), Gaps = 18/150 (12%)
Query: 1 MEATSLISLSSFAAGASSLPPVLCPHGN------NRRGLLSLTVDQQRCDNIGFISSKIL 54
ME T+ + S +S++ P L G+ RRG++ V R N + +
Sbjct: 1 METTAFNTTSRIGNWSSAISPPLQTCGSFKCQLPTRRGVI---VADLRNSNFRWRKATTT 57
Query: 55 SFCPKASLRGNL--EAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPY 112
S RGN+ EAV +PTSVPVRVA EL QAG+RYLDVRTP+EFS GH T AINVPY
Sbjct: 58 S-------RGNVAAEAVKIPTSVPVRVARELAQAGYRYLDVRTPDEFSIGHPTRAINVPY 110
Query: 113 MYRVGSGMTKNLKFVEEVSTRFRKHDEIIV 142
MYRVGSGM KN F+ +VS+ FRKHDEII+
Sbjct: 111 MYRVGSGMVKNPSFLRQVSSHFRKHDEIII 140
>sp|P27626|DIN1_RAPSA Senescence-associated protein DIN1 OS=Raphanus sativus GN=DIN1 PE=2
SV=1
Length = 183
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 52/71 (73%), Positives = 61/71 (85%)
Query: 72 PTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVS 131
PTSVPVRVA EL QAG+++LDVRTP+EFS GH + AINVPYMYRVGSGM KN F+ +VS
Sbjct: 71 PTSVPVRVARELAQAGYKHLDVRTPDEFSIGHPSRAINVPYMYRVGSGMVKNPSFLRQVS 130
Query: 132 TRFRKHDEIIV 142
+ FRKHDEII+
Sbjct: 131 SHFRKHDEIII 141
>sp|Q39129|STR16_ARATH Thiosulfate sulfurtransferase 16, chloroplastic OS=Arabidopsis
thaliana GN=STR16 PE=1 SV=2
Length = 120
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 51/72 (70%), Positives = 58/72 (80%)
Query: 71 VPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEV 130
VP+SV V VAH+LL AGHRYLDVRTPEEFS GHA GAINVPYM R SGM+KN F+E+V
Sbjct: 7 VPSSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNPDFLEQV 66
Query: 131 STRFRKHDEIIV 142
S+ F + D IIV
Sbjct: 67 SSHFGQSDNIIV 78
>sp|Q9FKW8|STR18_ARATH Thiosulfate sulfurtransferase 18 OS=Arabidopsis thaliana GN=STR18
PE=1 SV=1
Length = 136
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 74 SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGA--INVPYMYRVGSGMTKNLKFVEEVS 131
SV V A LLQ+GH+YLDVRT +EF GH A +N+PYM G KN +F+E+VS
Sbjct: 16 SVDVSQAKTLLQSGHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQGRVKNQEFLEQVS 75
Query: 132 TRFRKHDEIIV 142
+ D+I+V
Sbjct: 76 SLLNPADDILV 86
>sp|Q8RUD6|STR19_ARATH Rhodanese-like domain-containing protein 19, mitochondrial
OS=Arabidopsis thaliana GN=STR19 PE=2 SV=1
Length = 169
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 42/70 (60%)
Query: 74 SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR 133
+V V A L GHRYLDVRT EEF+ H A+N+PYM++ G N F+ +V++
Sbjct: 43 TVDVYTAKGFLSTGHRYLDVRTNEEFAKSHVEEALNIPYMFKTDEGRVINPDFLSQVASV 102
Query: 134 FRKHDEIIVV 143
+K + +IV
Sbjct: 103 CKKDEHLIVA 112
>sp|F4IPI4|STR17_ARATH Rhodanese-like domain-containing protein 17 OS=Arabidopsis thaliana
GN=STR17 PE=2 SV=1
Length = 156
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 74 SVPVRVAHELLQAGHRYLDVRTPEEFSAGH--ATGAINVPYMYRVGSGMTKNLKFVEEVS 131
++ V A +LL +G+ +LDVRT EEF GH + NVPY G N F++ VS
Sbjct: 34 TIDVNQAQKLLDSGYTFLDVRTVEEFKKGHVDSENVFNVPYWLYTPQGQEINPNFLKHVS 93
Query: 132 TRFRKHDEIIV 142
+ + D +I+
Sbjct: 94 SLCNQTDHLIL 104
>sp|Q94A65|STR14_ARATH Rhodanese-like domain-containing protein 14, chloroplastic
OS=Arabidopsis thaliana GN=At4g27700 PE=2 SV=1
Length = 224
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 41/90 (45%), Gaps = 22/90 (24%)
Query: 74 SVPVRVAHELLQAGHRY-LDVRTPEEFSAGHATGAINVPYMYR----------------- 115
SV V+ A L + + LDVR E+ AGH GAINV MYR
Sbjct: 76 SVDVKEAQRLQKENNFVILDVRPEAEYKAGHPPGAINVE-MYRLIREWTAWDIARRLGFA 134
Query: 116 ---VGSGMTKNLKFVEEVSTRFRKHDEIIV 142
+ SG +N +F++ V + K +IIV
Sbjct: 135 FFGIFSGTEENPEFIQSVEAKLDKEAKIIV 164
>sp|A1S1Z4|SELU_SHEAM tRNA 2-selenouridine synthase OS=Shewanella amazonensis (strain
ATCC BAA-1098 / SB2B) GN=selU PE=3 SV=1
Length = 367
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 73 TSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYM 113
+VP + E+ GH +DVR P EFS G A+N+P M
Sbjct: 4 NTVPAKQYREIFLKGHPIMDVRAPIEFSKGAFPNAVNLPLM 44
>sp|P54510|YQHL_BACSU Uncharacterized protein YqhL OS=Bacillus subtilis (strain 168)
GN=yqhL PE=4 SV=2
Length = 126
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 79 VAHELLQAGHR---YLDVRTPEEFSAGHATGAINVP 111
+ E +AG+R +DVR P EF GH GA N+P
Sbjct: 31 LTEEEFRAGYRKAQLIDVREPNEFEGGHILGARNIP 66
>sp|P23857|PSPE_ECOLI Thiosulfate sulfurtransferase PspE OS=Escherichia coli (strain K12)
GN=pspE PE=1 SV=1
Length = 104
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 86 AGHRYLDVRTPEEFSAGHATGAINVP 111
A ++DVR PE++ H GAIN+P
Sbjct: 19 AAEHWIDVRVPEQYQQEHVQGAINIP 44
>sp|A8G1H1|SELU_SHESH tRNA 2-selenouridine synthase OS=Shewanella sediminis (strain
HAW-EB3) GN=selU PE=3 SV=1
Length = 369
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 75 VPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYM 113
VP E++ +GH +DVR P EF+ G + N+P M
Sbjct: 6 VPKSAYREIMLSGHPMMDVRAPIEFNKGAFPSSTNLPLM 44
>sp|A9MLB3|SELU_SALAR tRNA 2-selenouridine synthase OS=Salmonella arizonae (strain ATCC
BAA-731 / CDC346-86 / RSK2980) GN=selU PE=3 SV=1
Length = 361
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 19/33 (57%)
Query: 81 HELLQAGHRYLDVRTPEEFSAGHATGAINVPYM 113
H LL A +DVR P EF G GAIN+P M
Sbjct: 8 HALLIADTPLIDVRAPIEFQQGAMPGAINLPLM 40
>sp|Q6MK43|SELU_BDEBA tRNA 2-selenouridine synthase OS=Bdellovibrio bacteriovorus (strain
ATCC 15356 / DSM 50701 / NCIB 9529 / HD100) GN=selU PE=3
SV=2
Length = 379
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 83 LLQAGHRYLDVRTPEEFSAGHATGAINVPYM 113
L Q +DVR P EFS G GA+N+P M
Sbjct: 14 LFQQNIPLMDVRAPVEFSQGSIPGAVNLPVM 44
>sp|B2AGP0|SELU_CUPTR tRNA 2-selenouridine synthase OS=Cupriavidus taiwanensis (strain R1
/ LMG 19424) GN=selU PE=3 SV=1
Length = 368
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 82 ELLQAGHRYLDVRTPEEFSAGHATGAINVPYM 113
EL +G LDVR P EF+ G GA+N+P M
Sbjct: 10 ELFLSGVAMLDVRAPLEFARGAFPGAVNLPLM 41
>sp|Q5F361|TBCK_CHICK TBC domain-containing protein kinase-like protein OS=Gallus gallus
GN=TBCK PE=2 SV=2
Length = 893
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 91 LDVRTPEEFSAGHATGAINVPY 112
+D+R E+F+ GH +G+INVP+
Sbjct: 797 VDIRNSEDFNRGHISGSINVPF 818
>sp|A0KRK0|SELU_SHESA tRNA 2-selenouridine synthase OS=Shewanella sp. (strain ANA-3)
GN=selU PE=3 SV=1
Length = 365
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 75 VPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYM 113
+P + H++ AG +D+R P EF G ++N+P M
Sbjct: 6 IPAQQYHDIFIAGQPLIDLRAPIEFDRGAFPSSVNLPLM 44
>sp|Q66KY0|SEL1A_XENLA Sel1 repeat-containing protein 1A OS=Xenopus laevis GN=selrc1-a
PE=2 SV=1
Length = 231
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 100 SAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR 135
S GH G N MY++G G+ KN + E + R R
Sbjct: 179 SLGHVWGCANASRMYKLGDGVAKNDEKAESLKNRAR 214
>sp|Q0I0D0|SELU_SHESR tRNA 2-selenouridine synthase OS=Shewanella sp. (strain MR-7)
GN=selU PE=3 SV=1
Length = 369
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 75 VPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYM 113
+P + H++ AG +D+R P EF G ++N+P M
Sbjct: 6 IPAQQYHDIFIAGQPLIDLRAPIEFDRGAFPSSVNLPLM 44
>sp|Q38W66|PYRH_LACSS Uridylate kinase OS=Lactobacillus sakei subsp. sakei (strain 23K)
GN=pyrH PE=3 SV=1
Length = 241
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 40/72 (55%), Gaps = 8/72 (11%)
Query: 22 VLCPHGNNRRGLL--SLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRV 79
++C GN RG+ + +++ + D +G +++ + + +L+ NLE++GVPT V +
Sbjct: 50 IVCGGGNIWRGVTGEQMGMERAQADYMGMMATVMNAL----ALQDNLESIGVPTRVQTSI 105
Query: 80 AHELLQAGHRYL 91
E+ Q Y+
Sbjct: 106 --EMRQIAEPYI 115
>sp|Q0HNW2|SELU_SHESM tRNA 2-selenouridine synthase OS=Shewanella sp. (strain MR-4)
GN=selU PE=3 SV=1
Length = 384
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 75 VPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYM 113
+P + H++ AG +D+R P EF G ++N+P M
Sbjct: 6 IPAQQYHDIFVAGKPLIDLRAPIEFDRGAFPSSVNLPLM 44
>sp|Q0V9D9|SELR1_XENTR Sel1 repeat-containing protein 1 OS=Xenopus tropicalis GN=selrc1
PE=2 SV=1
Length = 231
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 100 SAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR 135
S GH G N MY++G G+ KN + E + + R
Sbjct: 179 SLGHMWGCANASRMYKLGDGVAKNDEKAESLKNKAR 214
>sp|Q5FWY3|SEL1B_XENLA Sel1 repeat-containing protein 1B OS=Xenopus laevis GN=selrc1-b
PE=2 SV=1
Length = 227
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 102 GHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR 135
GH G N MY++G G+TKN + E + R
Sbjct: 181 GHVWGCANSSRMYKLGDGVTKNDEKAESFKNKAR 214
>sp|A9I3Z9|SELU_BORPD tRNA 2-selenouridine synthase OS=Bordetella petrii (strain ATCC
BAA-461 / DSM 12804 / CCUG 43448) GN=selU PE=3 SV=1
Length = 374
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 91 LDVRTPEEFSAGHATGAINVPYM 113
LD R P EFS G GA+N+P M
Sbjct: 19 LDTRAPTEFSKGAFPGAVNLPLM 41
>sp|Q8TEA7|TBCK_HUMAN TBC domain-containing protein kinase-like protein OS=Homo sapiens
GN=TBCK PE=2 SV=4
Length = 893
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 91 LDVRTPEEFSAGHATGAINVPY 112
+D+R E+F GH +G+IN+P+
Sbjct: 797 VDIRNSEDFIRGHISGSINIPF 818
>sp|A7MJZ3|SELU_CROS8 tRNA 2-selenouridine synthase OS=Cronobacter sakazakii (strain ATCC
BAA-894) GN=selU PE=3 SV=1
Length = 377
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 91 LDVRTPEEFSAGHATGAINVPYM 113
+DVR P EF+ G GAIN+P M
Sbjct: 25 IDVRAPVEFAQGAMPGAINLPLM 47
>sp|B1KN07|SELU_SHEWM tRNA 2-selenouridine synthase OS=Shewanella woodyi (strain ATCC
51908 / MS32) GN=selU PE=3 SV=1
Length = 368
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 75 VPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYM 113
+P E++ +GH +DVR P EF G + N P M
Sbjct: 6 IPKTTYQEIMLSGHPMIDVRAPIEFDKGAFPSSSNFPLM 44
>sp|B4T9K6|SELU_SALHS tRNA 2-selenouridine synthase OS=Salmonella heidelberg (strain
SL476) GN=selU PE=3 SV=1
Length = 364
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 83 LLQAGHRYLDVRTPEEFSAGHATGAINVPYM 113
LL A +DVR P EF G GAIN+P M
Sbjct: 13 LLLADTPLIDVRAPIEFEQGAMPGAINLPLM 43
>sp|B4TMJ2|SELU_SALSV tRNA 2-selenouridine synthase OS=Salmonella schwarzengrund (strain
CVM19633) GN=selU PE=3 SV=1
Length = 361
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 83 LLQAGHRYLDVRTPEEFSAGHATGAINVPYM 113
LL A +DVR P EF G GAIN+P M
Sbjct: 10 LLLADTPLIDVRAPIEFEQGAMPGAINLPLM 40
>sp|Q9S4Y8|SELU_SALEN tRNA 2-selenouridine synthase OS=Salmonella enteritidis GN=selU
PE=3 SV=1
Length = 364
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 83 LLQAGHRYLDVRTPEEFSAGHATGAINVPYM 113
LL A +DVR P EF G GAIN+P M
Sbjct: 13 LLLADTPLIDVRAPIEFEQGAMPGAINLPLM 43
>sp|C0PVG5|SELU_SALPC tRNA 2-selenouridine synthase OS=Salmonella paratyphi C (strain
RKS4594) GN=selU PE=3 SV=1
Length = 364
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 83 LLQAGHRYLDVRTPEEFSAGHATGAINVPYM 113
LL A +DVR P EF G GAIN+P M
Sbjct: 13 LLLADTPLIDVRAPIEFEQGAMPGAINLPLM 43
>sp|B4SXL9|SELU_SALNS tRNA 2-selenouridine synthase OS=Salmonella newport (strain SL254)
GN=selU PE=3 SV=1
Length = 364
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 83 LLQAGHRYLDVRTPEEFSAGHATGAINVPYM 113
LL A +DVR P EF G GAIN+P M
Sbjct: 13 LLLADTPLIDVRAPIEFEQGAMPGAINLPLM 43
>sp|B5R637|SELU_SALG2 tRNA 2-selenouridine synthase OS=Salmonella gallinarum (strain
287/91 / NCTC 13346) GN=selU PE=3 SV=1
Length = 364
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 83 LLQAGHRYLDVRTPEEFSAGHATGAINVPYM 113
LL A +DVR P EF G GAIN+P M
Sbjct: 13 LLLADTPLIDVRAPIEFEQGAMPGAINLPLM 43
>sp|Q57S51|SELU_SALCH tRNA 2-selenouridine synthase OS=Salmonella choleraesuis (strain
SC-B67) GN=selU PE=3 SV=1
Length = 364
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 83 LLQAGHRYLDVRTPEEFSAGHATGAINVPYM 113
LL A +DVR P EF G GAIN+P M
Sbjct: 13 LLLADTPLIDVRAPIEFEQGAMPGAINLPLM 43
>sp|A9MW55|SELU_SALPB tRNA 2-selenouridine synthase OS=Salmonella paratyphi B (strain
ATCC BAA-1250 / SPB7) GN=selU PE=3 SV=1
Length = 364
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 83 LLQAGHRYLDVRTPEEFSAGHATGAINVPYM 113
LL A +DVR P EF G GAIN+P M
Sbjct: 13 LLLADTPLIDVRAPIEFEQGAMPGAINLPLM 43
>sp|B5QUA2|SELU_SALEP tRNA 2-selenouridine synthase OS=Salmonella enteritidis PT4 (strain
P125109) GN=selU PE=3 SV=1
Length = 364
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 83 LLQAGHRYLDVRTPEEFSAGHATGAINVPYM 113
LL A +DVR P EF G GAIN+P M
Sbjct: 13 LLLADTPLIDVRAPIEFEQGAMPGAINLPLM 43
>sp|Q8Z8R4|SELU_SALTI tRNA 2-selenouridine synthase OS=Salmonella typhi GN=selU PE=3 SV=1
Length = 364
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 83 LLQAGHRYLDVRTPEEFSAGHATGAINVPYM 113
LL A +DVR P EF G GAIN+P M
Sbjct: 13 LLLADTPLIDVRAPIEFEQGAMPGAINLPLM 43
>sp|Q8ZR88|SELU_SALTY tRNA 2-selenouridine synthase OS=Salmonella typhimurium (strain LT2
/ SGSC1412 / ATCC 700720) GN=selU PE=1 SV=1
Length = 364
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 83 LLQAGHRYLDVRTPEEFSAGHATGAINVPYM 113
LL A +DVR P EF G GAIN+P M
Sbjct: 13 LLLADTPLIDVRAPIEFEQGAMPGAINLPLM 43
>sp|B5FLM4|SELU_SALDC tRNA 2-selenouridine synthase OS=Salmonella dublin (strain
CT_02021853) GN=selU PE=3 SV=1
Length = 364
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 91 LDVRTPEEFSAGHATGAINVPYM 113
+DVR P EF G GAIN+P M
Sbjct: 21 IDVRAPIEFEQGAMPGAINLPLM 43
>sp|B5EYB4|SELU_SALA4 tRNA 2-selenouridine synthase OS=Salmonella agona (strain SL483)
GN=selU PE=3 SV=1
Length = 364
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 83 LLQAGHRYLDVRTPEEFSAGHATGAINVPYM 113
LL A +DVR P EF G GAIN+P M
Sbjct: 13 LLLADTPLIDVRAPIEFEQGAMPGAINLPLM 43
>sp|Q0KEU1|SELU_CUPNH tRNA 2-selenouridine synthase OS=Cupriavidus necator (strain ATCC
17699 / H16 / DSM 428 / Stanier 337) GN=selU PE=3 SV=1
Length = 367
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 83 LLQAGHRYLDVRTPEEFSAGHATGAINVPYM 113
L +G LDVR P EF+ G GA+N+P M
Sbjct: 11 LFLSGVAMLDVRAPLEFARGAFPGAVNLPLM 41
>sp|B5BD19|SELU_SALPK tRNA 2-selenouridine synthase OS=Salmonella paratyphi A (strain
AKU_12601) GN=selU PE=3 SV=1
Length = 364
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 83 LLQAGHRYLDVRTPEEFSAGHATGAINVPYM 113
LL A +DVR P EF G GAIN+P M
Sbjct: 13 LLLADTPLIDVRAPIEFEQGAMPGAINLPLM 43
>sp|Q5PCH1|SELU_SALPA tRNA 2-selenouridine synthase OS=Salmonella paratyphi A (strain
ATCC 9150 / SARB42) GN=selU PE=3 SV=1
Length = 364
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 83 LLQAGHRYLDVRTPEEFSAGHATGAINVPYM 113
LL A +DVR P EF G GAIN+P M
Sbjct: 13 LLLADTPLIDVRAPIEFEQGAMPGAINLPLM 43
>sp|C6DH73|GLPE_PECCP Thiosulfate sulfurtransferase GlpE OS=Pectobacterium carotovorum
subsp. carotovorum (strain PC1) GN=glpE PE=3 SV=1
Length = 107
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 74 SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINV 110
++ + AH Q G +D+R P+ F+A H GA ++
Sbjct: 6 AISIEQAHSRWQEGGVVVDIRDPQSFAAAHVPGATHL 42
>sp|Q6CZL2|GLPE_ERWCT Thiosulfate sulfurtransferase GlpE OS=Erwinia carotovora subsp.
atroseptica (strain SCRI 1043 / ATCC BAA-672) GN=glpE
PE=3 SV=1
Length = 105
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 74 SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINV 110
++ + AH Q G +D+R P+ F+A H GA ++
Sbjct: 6 AISIEQAHSRWQEGGVVVDIRDPQSFAAAHVPGATHL 42
>sp|Q8NFU3|TSTD1_HUMAN Thiosulfate sulfurtransferase/rhodanese-like domain-containing
protein 1 OS=Homo sapiens GN=TSTD1 PE=1 SV=3
Length = 115
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 69 VGVPTSVPVRVAHELLQAGH-RYLDVRTPEEFSAGHATGAINVP 111
G PT V + LL +G R DVR+ EE +AG GA+N+P
Sbjct: 2 AGAPT-VSLPELRSLLASGRARLFDVRSREEAAAGTIPGALNIP 44
>sp|Q1R084|SELU_CHRSD tRNA 2-selenouridine synthase OS=Chromohalobacter salexigens
(strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=selU
PE=3 SV=1
Length = 361
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 91 LDVRTPEEFSAGHATGAINVPYM 113
+DVR P EF+ G GA+N+P M
Sbjct: 18 IDVRAPVEFARGALPGAVNLPLM 40
>sp|Q8EKA0|SELU_SHEON tRNA 2-selenouridine synthase OS=Shewanella oneidensis (strain
MR-1) GN=selU PE=3 SV=1
Length = 376
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 73 TSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYM 113
T +P + ++ AG +D+R P EF+ G ++N+P M
Sbjct: 4 TLIPAQQYRDIFVAGKPLIDLRAPIEFNRGAFPSSVNLPLM 44
>sp|A0KEH8|GLPE_AERHH Thiosulfate sulfurtransferase GlpE OS=Aeromonas hydrophila subsp.
hydrophila (strain ATCC 7966 / NCIB 9240) GN=glpE PE=3
SV=1
Length = 107
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 75 VPVRVAHELLQAGH-RYLDVRTPEEFSAGHATGAINV 110
+ AH+ L AG R +D+R P+ F HA GA ++
Sbjct: 7 ISAHDAHQKLAAGAARLVDIRDPQSFETAHAVGAFHL 43
>sp|B7MDQ1|GLPE_ECO45 Thiosulfate sulfurtransferase GlpE OS=Escherichia coli O45:K1
(strain S88 / ExPEC) GN=glpE PE=3 SV=1
Length = 108
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 75 VPVRVAHELLQAGHRYL-DVRTPEEFSAGHATGAINV 110
+ V AH+ LQ L D+R P+ F+ GHAT A ++
Sbjct: 7 INVADAHQKLQEKEAVLVDIRDPQSFAMGHATQAFHL 43
>sp|Q12305|RDL1_YEAST Thiosulfate sulfurtransferase RDL1, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RDL1 PE=1
SV=1
Length = 139
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 91 LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEV 130
+DVR P E+S H +INVPY + L+F +++
Sbjct: 44 VDVREPSEYSIVHIPASINVPYRSHPDAFALDPLEFEKQI 83
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,543,435
Number of Sequences: 539616
Number of extensions: 1869708
Number of successful extensions: 5150
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 5091
Number of HSP's gapped (non-prelim): 65
length of query: 147
length of database: 191,569,459
effective HSP length: 106
effective length of query: 41
effective length of database: 134,370,163
effective search space: 5509176683
effective search space used: 5509176683
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)