Query 032117
Match_columns 147
No_of_seqs 255 out of 1351
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 09:49:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032117.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032117hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1530 Rhodanese-related sulf 99.7 3E-17 6.5E-22 115.3 7.5 78 70-147 20-99 (136)
2 cd01533 4RHOD_Repeat_2 Member 99.6 1.3E-15 2.8E-20 104.5 7.7 67 69-147 6-76 (109)
3 cd01523 RHOD_Lact_B Member of 99.6 1.8E-15 3.9E-20 102.1 7.3 69 75-147 1-71 (100)
4 cd01518 RHOD_YceA Member of th 99.6 9.1E-16 2E-20 103.8 5.5 68 74-147 3-71 (101)
5 PLN02160 thiosulfate sulfurtra 99.6 2.8E-15 6.1E-20 107.4 8.2 77 71-147 13-91 (136)
6 cd01534 4RHOD_Repeat_3 Member 99.6 4.3E-15 9.3E-20 99.5 7.2 62 75-147 1-66 (95)
7 cd01527 RHOD_YgaP Member of th 99.6 3.9E-15 8.4E-20 100.2 6.3 63 73-147 2-64 (99)
8 cd01520 RHOD_YbbB Member of th 99.6 5E-15 1.1E-19 104.7 6.9 39 75-113 1-39 (128)
9 cd01524 RHOD_Pyr_redox Member 99.6 1.1E-14 2.5E-19 96.6 7.0 61 75-147 1-61 (90)
10 PRK00162 glpE thiosulfate sulf 99.6 1.9E-14 4E-19 98.6 7.7 65 71-147 3-68 (108)
11 cd01530 Cdc25 Cdc25 phosphatas 99.5 2E-14 4.3E-19 100.9 7.5 64 73-147 2-79 (121)
12 cd01519 RHOD_HSP67B2 Member of 99.5 1.4E-14 3.1E-19 98.3 6.3 71 76-147 2-76 (106)
13 cd01521 RHOD_PspE2 Member of t 99.5 2.1E-14 4.5E-19 98.8 6.8 65 72-147 7-74 (110)
14 cd01522 RHOD_1 Member of the R 99.5 5.1E-14 1.1E-18 98.1 7.9 71 75-147 1-74 (117)
15 cd01526 RHOD_ThiF Member of th 99.5 4.3E-14 9.2E-19 99.0 6.9 75 71-147 6-82 (122)
16 cd01528 RHOD_2 Member of the R 99.5 4.9E-14 1.1E-18 95.3 6.9 61 75-147 2-68 (101)
17 cd01444 GlpE_ST GlpE sulfurtra 99.5 8.3E-14 1.8E-18 92.8 7.2 61 75-147 2-66 (96)
18 cd01449 TST_Repeat_2 Thiosulfa 99.5 9.8E-14 2.1E-18 95.9 6.5 73 75-147 1-88 (118)
19 cd01448 TST_Repeat_1 Thiosulfa 99.5 2.1E-13 4.5E-18 95.0 7.9 73 75-147 2-89 (122)
20 COG2897 SseA Rhodanese-related 99.5 1.7E-13 3.6E-18 108.9 8.0 135 9-147 81-244 (285)
21 cd01447 Polysulfide_ST Polysul 99.5 2.1E-13 4.5E-18 91.9 7.0 69 75-147 1-71 (103)
22 cd01525 RHOD_Kc Member of the 99.5 9.9E-14 2.1E-18 94.1 5.3 70 75-147 1-75 (105)
23 PRK07411 hypothetical protein; 99.4 2.9E-13 6.2E-18 112.0 8.6 106 33-147 243-352 (390)
24 PF00581 Rhodanese: Rhodanese- 99.4 3.2E-13 6.9E-18 91.7 7.1 72 76-147 1-77 (113)
25 cd01443 Cdc25_Acr2p Cdc25 enzy 99.4 3.5E-13 7.5E-18 93.1 6.0 65 73-146 2-75 (113)
26 PRK07878 molybdopterin biosynt 99.4 8.9E-13 1.9E-17 109.2 8.6 99 34-147 252-353 (392)
27 cd01531 Acr2p Eukaryotic arsen 99.4 5.7E-13 1.2E-17 91.9 5.3 64 73-145 2-70 (113)
28 cd01529 4RHOD_Repeats Member o 99.4 6.9E-13 1.5E-17 88.9 5.6 56 86-147 11-66 (96)
29 cd01532 4RHOD_Repeat_1 Member 99.4 1.5E-12 3.2E-17 86.9 5.7 51 86-147 9-60 (92)
30 TIGR03865 PQQ_CXXCW PQQ-depend 99.3 6.1E-12 1.3E-16 92.6 8.0 75 71-147 34-126 (162)
31 PRK08762 molybdopterin biosynt 99.3 3.8E-12 8.2E-17 104.8 7.6 64 72-147 2-67 (376)
32 PRK05320 rhodanese superfamily 99.3 3.3E-12 7.3E-17 100.4 7.0 71 71-147 108-185 (257)
33 PLN02723 3-mercaptopyruvate su 99.3 2.4E-12 5.1E-17 104.0 6.2 74 74-147 191-279 (320)
34 TIGR02981 phageshock_pspE phag 99.3 4E-12 8.6E-17 86.8 6.2 49 87-147 18-68 (101)
35 PRK01415 hypothetical protein; 99.3 3.7E-12 8.1E-17 99.5 6.5 70 72-147 111-181 (247)
36 cd01445 TST_Repeats Thiosulfat 99.3 7.5E-12 1.6E-16 89.8 7.4 72 75-146 1-104 (138)
37 PRK10287 thiosulfate:cyanide s 99.3 4.7E-12 1E-16 86.9 5.8 49 87-147 20-70 (104)
38 PRK11493 sseA 3-mercaptopyruva 99.3 8E-12 1.7E-16 99.1 7.8 75 73-147 5-97 (281)
39 PRK11493 sseA 3-mercaptopyruva 99.3 7.1E-12 1.5E-16 99.4 5.9 74 74-147 154-241 (281)
40 cd01446 DSP_MapKP N-terminal r 99.3 1.3E-11 2.9E-16 87.2 6.3 72 74-147 1-85 (132)
41 smart00450 RHOD Rhodanese Homo 99.3 1.7E-11 3.6E-16 80.8 6.4 62 86-147 3-66 (100)
42 PRK00142 putative rhodanese-re 99.3 1.4E-11 3.1E-16 99.4 6.9 68 72-147 111-181 (314)
43 cd01535 4RHOD_Repeat_4 Member 99.2 1.2E-11 2.7E-16 89.4 5.9 56 80-147 2-59 (145)
44 PRK05600 thiamine biosynthesis 99.2 1.9E-11 4.1E-16 100.7 7.3 67 74-147 272-342 (370)
45 cd00158 RHOD Rhodanese Homolog 99.2 2.1E-11 4.5E-16 79.3 5.7 57 80-147 2-60 (89)
46 PRK09629 bifunctional thiosulf 99.2 3.3E-11 7.1E-16 104.8 8.1 75 73-147 9-91 (610)
47 PRK09629 bifunctional thiosulf 99.2 2.8E-11 6.1E-16 105.2 7.1 74 74-147 148-233 (610)
48 COG0607 PspE Rhodanese-related 99.2 4.2E-11 9E-16 81.2 6.3 50 86-147 19-71 (110)
49 PRK11784 tRNA 2-selenouridine 99.2 7E-11 1.5E-15 96.5 8.0 38 76-113 4-41 (345)
50 PLN02723 3-mercaptopyruvate su 99.1 2E-10 4.4E-15 92.8 7.8 75 73-147 22-113 (320)
51 PRK05597 molybdopterin biosynt 99.1 2.1E-10 4.6E-15 94.0 6.1 65 71-147 259-324 (355)
52 TIGR03167 tRNA_sel_U_synt tRNA 99.0 6.5E-10 1.4E-14 89.6 6.6 27 87-113 2-28 (311)
53 PRK01269 tRNA s(4)U8 sulfurtra 99.0 6.3E-10 1.4E-14 94.5 6.8 56 80-147 400-459 (482)
54 KOG2017 Molybdopterin synthase 98.8 8.3E-09 1.8E-13 83.6 6.8 95 44-147 289-387 (427)
55 KOG3772 M-phase inducer phosph 98.6 6.7E-08 1.4E-12 77.7 5.2 44 70-113 153-203 (325)
56 COG2897 SseA Rhodanese-related 98.5 4.9E-07 1.1E-11 72.1 7.5 75 72-146 10-99 (285)
57 COG1054 Predicted sulfurtransf 98.4 3.4E-07 7.3E-12 72.9 3.7 67 73-147 113-182 (308)
58 KOG1529 Mercaptopyruvate sulfu 98.2 2.1E-06 4.6E-11 68.0 4.5 61 87-147 172-246 (286)
59 PF04273 DUF442: Putative phos 97.0 0.0029 6.2E-08 43.7 6.3 69 73-147 13-96 (110)
60 TIGR01244 conserved hypothetic 96.9 0.0045 9.8E-08 44.0 6.5 70 73-147 13-96 (135)
61 COG5105 MIH1 Mitotic inducer, 96.8 0.0021 4.6E-08 52.2 4.6 64 71-145 240-312 (427)
62 KOG1529 Mercaptopyruvate sulfu 96.6 0.0091 2E-07 47.6 7.0 72 74-145 6-94 (286)
63 COG2603 Predicted ATPase [Gene 95.6 0.0091 2E-07 47.9 2.6 38 77-114 5-42 (334)
64 PRK00142 putative rhodanese-re 95.6 0.0035 7.6E-08 50.8 0.3 39 75-113 16-54 (314)
65 PF13350 Y_phosphatase3: Tyros 94.5 0.24 5.2E-06 35.9 7.4 44 70-113 25-74 (164)
66 PLN02727 NAD kinase 93.5 0.25 5.4E-06 45.5 6.8 71 72-147 266-351 (986)
67 COG3453 Uncharacterized protei 92.3 0.46 1E-05 33.5 5.3 70 72-147 13-97 (130)
68 cd00127 DSPc Dual specificity 91.4 0.33 7.2E-06 33.6 4.0 68 80-147 20-91 (139)
69 TIGR03167 tRNA_sel_U_synt tRNA 90.8 0.76 1.6E-05 37.3 6.0 63 72-146 135-205 (311)
70 smart00195 DSPc Dual specifici 90.3 0.5 1.1E-05 32.9 4.0 64 80-147 19-88 (138)
71 COG1891 Uncharacterized protei 87.5 0.9 2E-05 34.3 3.8 36 72-112 5-40 (235)
72 KOG1093 Predicted protein kina 85.4 0.19 4.2E-06 43.9 -0.7 40 72-113 621-660 (725)
73 PF05706 CDKN3: Cyclin-depende 79.2 3.9 8.4E-05 30.4 4.2 69 79-147 63-143 (168)
74 PTZ00242 protein tyrosine phos 77.5 7.9 0.00017 28.3 5.5 65 78-147 31-108 (166)
75 PRK12361 hypothetical protein; 74.2 5.3 0.00012 34.6 4.4 68 76-147 109-185 (547)
76 PRK07688 thiamine/molybdopteri 72.2 2.7 5.8E-05 34.5 2.0 37 71-108 275-318 (339)
77 PF00782 DSPc: Dual specificit 72.2 6.3 0.00014 26.9 3.7 63 85-147 16-83 (133)
78 PF03162 Y_phosphatase2: Tyros 61.1 15 0.00031 27.0 3.9 60 88-147 34-101 (164)
79 KOG1717 Dual specificity phosp 60.0 4.4 9.5E-05 32.6 0.9 35 74-112 5-40 (343)
80 PTZ00393 protein tyrosine phos 58.9 41 0.0009 26.4 6.2 64 79-147 108-180 (241)
81 COG2453 CDC14 Predicted protei 58.5 8.9 0.00019 28.3 2.4 14 134-147 102-115 (180)
82 KOG3636 Uncharacterized conser 57.4 5.4 0.00012 34.4 1.1 39 74-112 308-351 (669)
83 PRK11784 tRNA 2-selenouridine 57.1 32 0.0007 28.3 5.6 61 74-146 151-218 (345)
84 PF14566 PTPlike_phytase: Inos 37.7 50 0.0011 23.5 3.5 27 121-147 105-134 (149)
85 smart00404 PTPc_motif Protein 35.4 51 0.0011 20.8 3.0 12 136-147 38-49 (105)
86 smart00012 PTPc_DSPc Protein t 35.4 51 0.0011 20.8 3.0 12 136-147 38-49 (105)
87 PF07879 PHB_acc_N: PHB/PHA ac 34.0 40 0.00087 21.0 2.1 27 72-98 17-45 (64)
88 PF04343 DUF488: Protein of un 33.5 39 0.00086 23.0 2.3 20 76-95 1-22 (122)
89 PRK02227 hypothetical protein; 31.3 57 0.0012 25.6 3.0 26 74-99 7-32 (238)
90 KOG2283 Clathrin coat dissocia 30.3 1.1E+02 0.0023 26.2 4.8 72 76-147 39-117 (434)
91 COG1798 DPH5 Diphthamide biosy 24.3 1.9E+02 0.0041 23.0 4.8 52 78-147 149-208 (260)
92 PRK13957 indole-3-glycerol-pho 24.2 2.1E+02 0.0045 22.5 5.1 72 74-147 134-210 (247)
93 smart00194 PTPc Protein tyrosi 22.7 1.1E+02 0.0023 23.5 3.3 11 137-147 193-203 (258)
94 PHA02742 protein tyrosine phos 21.9 96 0.0021 24.8 2.9 11 137-147 229-239 (303)
95 cd00047 PTPc Protein tyrosine 21.8 92 0.002 23.3 2.7 12 136-147 165-176 (231)
96 TIGR01848 PHA_reg_PhaR polyhyd 21.2 96 0.0021 21.3 2.3 27 72-98 17-45 (107)
No 1
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.71 E-value=3e-17 Score=115.34 Aligned_cols=78 Identities=41% Similarity=0.600 Sum_probs=69.4
Q ss_pred CCCcccCHHHHHHHHhCC-CeEEEeCChHHHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHhhccC-CCCeEEEEcCCC
Q 032117 70 GVPTSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR-KHDEIIVVSPCI 147 (147)
Q Consensus 70 ~~~~~Is~~el~~~~~~~-~~lIDVR~~~e~~~ghIpGAinip~~~~~~~~~~~~~~~l~~~~~~l~-~d~~IVvyC~s~ 147 (147)
..+..++.++++++++.+ .++||||+|+||..||+|.++|||+......++..+++|++++....+ .|++|||+|+||
T Consensus 20 ~~~~sv~~~qvk~L~~~~~~~llDVRepeEfk~gh~~~siNiPy~~~~~~~~l~~~eF~kqvg~~kp~~d~eiIf~C~SG 99 (136)
T KOG1530|consen 20 SNPQSVSVEQVKNLLQHPDVVLLDVREPEEFKQGHIPASINIPYMSRPGAGALKNPEFLKQVGSSKPPHDKEIIFGCASG 99 (136)
T ss_pred CCcEEEEHHHHHHHhcCCCEEEEeecCHHHhhccCCcceEeccccccccccccCCHHHHHHhcccCCCCCCcEEEEeccC
Confidence 456789999999999987 899999999999999999999999986666778889999999887766 466999999997
No 2
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.63 E-value=1.3e-15 Score=104.53 Aligned_cols=67 Identities=19% Similarity=0.140 Sum_probs=53.9
Q ss_pred cCCCcccCHHHHHHHHhCC--CeEEEeCChHHHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHhhcc--CCCCeEEEEc
Q 032117 69 VGVPTSVPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEIIVVS 144 (147)
Q Consensus 69 ~~~~~~Is~~el~~~~~~~--~~lIDVR~~~e~~~ghIpGAinip~~~~~~~~~~~~~~~l~~~~~~l--~~d~~IVvyC 144 (147)
......|+++++.++++++ .+|||||++.||..||||||+|+|+. .+......+ +++++||+||
T Consensus 6 ~~~~~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~ghIpgainip~~------------~l~~~~~~l~~~~~~~ivv~C 73 (109)
T cd01533 6 VRHTPSVSADELAALQARGAPLVVLDGRRFDEYRKMTIPGSVSCPGA------------ELVLRVGELAPDPRTPIVVNC 73 (109)
T ss_pred cccCCcCCHHHHHHHHhcCCCcEEEeCCCHHHHhcCcCCCceeCCHH------------HHHHHHHhcCCCCCCeEEEEC
Confidence 3445789999999998754 58999999999999999999999995 233333334 5678999999
Q ss_pred CCC
Q 032117 145 PCI 147 (147)
Q Consensus 145 ~s~ 147 (147)
++|
T Consensus 74 ~~G 76 (109)
T cd01533 74 AGR 76 (109)
T ss_pred CCC
Confidence 986
No 3
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.61 E-value=1.8e-15 Score=102.12 Aligned_cols=69 Identities=22% Similarity=0.278 Sum_probs=52.0
Q ss_pred cCHHHHHHHHhCC--CeEEEeCChHHHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHhhccCCCCeEEEEcCCC
Q 032117 75 VPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVVSPCI 147 (147)
Q Consensus 75 Is~~el~~~~~~~--~~lIDVR~~~e~~~ghIpGAinip~~~~~~~~~~~~~~~l~~~~~~l~~d~~IVvyC~s~ 147 (147)
|++++++++++++ .+|||||++.||+.||||||+|+|+...... . .+...+....++++++||+||++|
T Consensus 1 is~~el~~~l~~~~~~~liDvR~~~e~~~ghi~ga~~ip~~~~~~~-~---~~~~~~~~~~~~~~~~ivv~C~~G 71 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVRNESDYERWKIDGENNTPYFDPYFD-F---LEIEEDILDQLPDDQEVTVICAKE 71 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeCCHHHHhhcccCCCcccccccchHH-H---HHhhHHHHhhCCCCCeEEEEcCCC
Confidence 5789999998764 6899999999999999999999999621100 0 000123345678999999999985
No 4
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.61 E-value=9.1e-16 Score=103.85 Aligned_cols=68 Identities=22% Similarity=0.196 Sum_probs=50.9
Q ss_pred ccCHHHHHHHHhCC-CeEEEeCChHHHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHhhccCCCCeEEEEcCCC
Q 032117 74 SVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVVSPCI 147 (147)
Q Consensus 74 ~Is~~el~~~~~~~-~~lIDVR~~~e~~~ghIpGAinip~~~~~~~~~~~~~~~l~~~~~~l~~d~~IVvyC~s~ 147 (147)
.|+++++.++++++ .+|||||++.||+.||||||+|+|+.... ...+.+.+. ..++++++|||||++|
T Consensus 3 ~is~~~l~~~~~~~~~~iiDvR~~~e~~~ghi~gA~~ip~~~~~-----~~~~~~~~~-~~~~~~~~ivvyC~~G 71 (101)
T cd01518 3 YLSPAEWNELLEDPEVVLLDVRNDYEYDIGHFKGAVNPDVDTFR-----EFPFWLDEN-LDLLKGKKVLMYCTGG 71 (101)
T ss_pred cCCHHHHHHHHcCCCEEEEEcCChhhhhcCEeccccCCCcccHh-----HhHHHHHhh-hhhcCCCEEEEECCCc
Confidence 58999999998764 78999999999999999999999996210 001111111 1247899999999986
No 5
>PLN02160 thiosulfate sulfurtransferase
Probab=99.61 E-value=2.8e-15 Score=107.35 Aligned_cols=77 Identities=44% Similarity=0.679 Sum_probs=60.4
Q ss_pred CCcccCHHHHHHHHhCCCeEEEeCChHHHhcCCCCCe--EEcCcccccCCCCCCCHHHHHHHhhccCCCCeEEEEcCCC
Q 032117 71 VPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGA--INVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVVSPCI 147 (147)
Q Consensus 71 ~~~~Is~~el~~~~~~~~~lIDVR~~~e~~~ghIpGA--inip~~~~~~~~~~~~~~~l~~~~~~l~~d~~IVvyC~s~ 147 (147)
.+..+++++++++++++..|||||++.||..|||||| +|+|+......+...+++++..+...++++++||+||++|
T Consensus 13 ~~~~i~~~e~~~~~~~~~~lIDVR~~~E~~~ghIpgA~~iniP~~~~~~~~~l~~~~~~~~~~~~~~~~~~IivyC~sG 91 (136)
T PLN02160 13 EVVSVDVSQAKTLLQSGHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQGRVKNQEFLEQVSSLLNPADDILVGCQSG 91 (136)
T ss_pred eeeEeCHHHHHHHHhCCCEEEECCCHHHHhcCCCCCcceecccchhcCcccccCCHHHHHHHHhccCCCCcEEEECCCc
Confidence 3667999999999987788999999999999999999 8999853322233344556555544468899999999987
No 6
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.59 E-value=4.3e-15 Score=99.55 Aligned_cols=62 Identities=26% Similarity=0.315 Sum_probs=48.1
Q ss_pred cCHHHHHHHHhCC---CeEEEeCChHHHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHhhcc-CCCCeEEEEcCCC
Q 032117 75 VPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF-RKHDEIIVVSPCI 147 (147)
Q Consensus 75 Is~~el~~~~~~~---~~lIDVR~~~e~~~ghIpGAinip~~~~~~~~~~~~~~~l~~~~~~l-~~d~~IVvyC~s~ 147 (147)
|+++++.++++++ .+|||||++.||..||||||+|+|+. ++........ .++++||+||++|
T Consensus 1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~ghipga~~ip~~-----------~l~~~~~~~~~~~~~~iv~~c~~G 66 (95)
T cd01534 1 IGAAELARWAAEGDRTVYRFDVRTPEEYEAGHLPGFRHTPGG-----------QLVQETDHFAPVRGARIVLADDDG 66 (95)
T ss_pred CCHHHHHHHHHcCCCCeEEEECCCHHHHHhCCCCCcEeCCHH-----------HHHHHHHHhcccCCCeEEEECCCC
Confidence 6788999998753 57999999999999999999999985 2222222212 2578999999986
No 7
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.58 E-value=3.9e-15 Score=100.23 Aligned_cols=63 Identities=27% Similarity=0.354 Sum_probs=52.5
Q ss_pred cccCHHHHHHHHhCCCeEEEeCChHHHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHhhccCCCCeEEEEcCCC
Q 032117 73 TSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVVSPCI 147 (147)
Q Consensus 73 ~~Is~~el~~~~~~~~~lIDVR~~~e~~~ghIpGAinip~~~~~~~~~~~~~~~l~~~~~~l~~d~~IVvyC~s~ 147 (147)
..|+++|+.++++++.+|||+|+++||..||||||+|+|+. + +......++++++||+||++|
T Consensus 2 ~~i~~~el~~~~~~~~~liDvR~~~e~~~~hi~ga~~ip~~-----------~-~~~~~~~~~~~~~iv~~c~~g 64 (99)
T cd01527 2 TTISPNDACELLAQGAVLVDIREPDEYLRERIPGARLVPLS-----------Q-LESEGLPLVGANAIIFHCRSG 64 (99)
T ss_pred CccCHHHHHHHHHCCCEEEECCCHHHHHhCcCCCCEECChh-----------H-hcccccCCCCCCcEEEEeCCC
Confidence 45899999999987889999999999999999999999996 2 222222368899999999986
No 8
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.58 E-value=5e-15 Score=104.66 Aligned_cols=39 Identities=38% Similarity=0.645 Sum_probs=36.5
Q ss_pred cCHHHHHHHHhCCCeEEEeCChHHHhcCCCCCeEEcCcc
Q 032117 75 VPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYM 113 (147)
Q Consensus 75 Is~~el~~~~~~~~~lIDVR~~~e~~~ghIpGAinip~~ 113 (147)
||++|++++++++.+|||||++.||..||||||+|||+.
T Consensus 1 ~s~~el~~~l~~~~~iiDvR~~~e~~~ghIpgAinip~~ 39 (128)
T cd01520 1 ITAEDLLALRKADGPLIDVRSPKEFFEGHLPGAINLPLL 39 (128)
T ss_pred CCHHHHHHHHhcCCEEEECCCHHHhccCcCCCcEEccCC
Confidence 688999999987789999999999999999999999995
No 9
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.56 E-value=1.1e-14 Score=96.56 Aligned_cols=61 Identities=34% Similarity=0.482 Sum_probs=51.4
Q ss_pred cCHHHHHHHHhCCCeEEEeCChHHHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHhhccCCCCeEEEEcCCC
Q 032117 75 VPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVVSPCI 147 (147)
Q Consensus 75 Is~~el~~~~~~~~~lIDVR~~~e~~~ghIpGAinip~~~~~~~~~~~~~~~l~~~~~~l~~d~~IVvyC~s~ 147 (147)
++++++.++++++.++||+|++++|..||||||+|+|+. .+......++++++||+||.++
T Consensus 1 ~~~~e~~~~~~~~~~iiD~R~~~~~~~~hipgA~~ip~~------------~~~~~~~~~~~~~~vvl~c~~g 61 (90)
T cd01524 1 VQWHELDNYRADGVTLIDVRTPQEFEKGHIKGAINIPLD------------ELRDRLNELPKDKEIIVYCAVG 61 (90)
T ss_pred CCHHHHHHHhcCCCEEEECCCHHHHhcCCCCCCEeCCHH------------HHHHHHHhcCCCCcEEEEcCCC
Confidence 478899999877789999999999999999999999985 2333344578899999999874
No 10
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.55 E-value=1.9e-14 Score=98.57 Aligned_cols=65 Identities=25% Similarity=0.343 Sum_probs=54.7
Q ss_pred CCcccCHHHHHHHHhC-CCeEEEeCChHHHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHhhccCCCCeEEEEcCCC
Q 032117 71 VPTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVVSPCI 147 (147)
Q Consensus 71 ~~~~Is~~el~~~~~~-~~~lIDVR~~~e~~~ghIpGAinip~~~~~~~~~~~~~~~l~~~~~~l~~d~~IVvyC~s~ 147 (147)
..+.++++++.+++++ +.+|||||++.||..||||||+|+|+. .+......++++++|++||.++
T Consensus 3 ~~~~is~~el~~~l~~~~~~ivDvR~~~e~~~ghi~gA~~ip~~------------~l~~~~~~~~~~~~ivv~c~~g 68 (108)
T PRK00162 3 QFECINVEQAHQKLQEGGAVLVDIRDPQSFAMGHAPGAFHLTND------------SLGAFMRQADFDTPVMVMCYHG 68 (108)
T ss_pred CccccCHHHHHHHHHcCCCEEEEcCCHHHHhcCCCCCCeECCHH------------HHHHHHHhcCCCCCEEEEeCCC
Confidence 3567999999999865 578999999999999999999999985 3344445578999999999875
No 11
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.54 E-value=2e-14 Score=100.94 Aligned_cols=64 Identities=25% Similarity=0.332 Sum_probs=50.4
Q ss_pred cccCHHHHHHHHhC-------CCeEEEeCChHHHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHh-h-----ccCCCCe
Q 032117 73 TSVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVS-T-----RFRKHDE 139 (147)
Q Consensus 73 ~~Is~~el~~~~~~-------~~~lIDVR~~~e~~~ghIpGAinip~~~~~~~~~~~~~~~l~~~~-~-----~l~~d~~ 139 (147)
..|+++++.+++++ +.+|||||++.||+.||||||+|+|+. +.+.... . .++++++
T Consensus 2 ~~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA~~ip~~-----------~~l~~~~~~~~~~~~~~~~~~ 70 (121)
T cd01530 2 KRISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAVNLSTK-----------DELEEFFLDKPGVASKKKRRV 70 (121)
T ss_pred CccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCCEeCCcH-----------HHHHHHHHHhhcccccCCCCE
Confidence 35899999999865 368999999999999999999999984 1222221 1 2578999
Q ss_pred EEEEcC-CC
Q 032117 140 IIVVSP-CI 147 (147)
Q Consensus 140 IVvyC~-s~ 147 (147)
||+||+ +|
T Consensus 71 vv~yC~~sg 79 (121)
T cd01530 71 LIFHCEFSS 79 (121)
T ss_pred EEEECCCcc
Confidence 999997 64
No 12
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.54 E-value=1.4e-14 Score=98.27 Aligned_cols=71 Identities=24% Similarity=0.287 Sum_probs=52.2
Q ss_pred CHHHHHHHHh-C-CCeEEEeCChHHHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHhhc--cCCCCeEEEEcCCC
Q 032117 76 PVRVAHELLQ-A-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVVSPCI 147 (147)
Q Consensus 76 s~~el~~~~~-~-~~~lIDVR~~~e~~~ghIpGAinip~~~~~~~~~~~~~~~l~~~~~~--l~~d~~IVvyC~s~ 147 (147)
|++++.++++ + +.+|||+|++.||..||||||+|+|+... .......++.+.+.... .+++++||+||++|
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ivv~c~~g 76 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVREPEELKTGKIPGAINIPLSSL-PDALALSEEEFEKKYGFPKPSKDKELIFYCKAG 76 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECCCHHHHhcCcCCCcEEechHHh-hhhhCCCHHHHHHHhcccCCCCCCeEEEECCCc
Confidence 6788888887 5 48899999999999999999999999732 22222233333333332 46789999999985
No 13
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.53 E-value=2.1e-14 Score=98.80 Aligned_cols=65 Identities=25% Similarity=0.384 Sum_probs=53.2
Q ss_pred CcccCHHHHHHHHhCC---CeEEEeCChHHHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHhhccCCCCeEEEEcCCC
Q 032117 72 PTSVPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVVSPCI 147 (147)
Q Consensus 72 ~~~Is~~el~~~~~~~---~~lIDVR~~~e~~~ghIpGAinip~~~~~~~~~~~~~~~l~~~~~~l~~d~~IVvyC~s~ 147 (147)
...++++++.++++++ .+|||||++.+|..||||||+|+|+. .+..+....++++++||+||.++
T Consensus 7 ~~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~-----------~l~~~~~~~i~~~~~vvvyc~~g 74 (110)
T cd01521 7 AFETDCWDVAIALKNGKPDFVLVDVRSAEAYARGHVPGAINLPHR-----------EICENATAKLDKEKLFVVYCDGP 74 (110)
T ss_pred eeecCHHHHHHHHHcCCCCEEEEECCCHHHHhcCCCCCCEeCCHH-----------HhhhHhhhcCCCCCeEEEEECCC
Confidence 3568999999999753 68999999999999999999999986 22223344578999999999864
No 14
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.52 E-value=5.1e-14 Score=98.09 Aligned_cols=71 Identities=24% Similarity=0.324 Sum_probs=54.7
Q ss_pred cCHHHHHHHHhC--CCeEEEeCChHHHh-cCCCCCeEEcCcccccCCCCCCCHHHHHHHhhccCCCCeEEEEcCCC
Q 032117 75 VPVRVAHELLQA--GHRYLDVRTPEEFS-AGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVVSPCI 147 (147)
Q Consensus 75 Is~~el~~~~~~--~~~lIDVR~~~e~~-~ghIpGAinip~~~~~~~~~~~~~~~l~~~~~~l~~d~~IVvyC~s~ 147 (147)
|+++++++++++ +.+|||||++.||+ .||||||+|+|+...... ..+..+..++...++++++||+||++|
T Consensus 1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~ghIpgA~~ip~~~~~~~--~~~~~~~~~l~~~~~~~~~ivv~C~~G 74 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVRTEAEWKFVGGVPDAVHVAWQVYPDM--EINPNFLAELEEKVGKDRPVLLLCRSG 74 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECCCHHHHhcccCCCCceecchhhcccc--ccCHHHHHHHHhhCCCCCeEEEEcCCC
Confidence 588999999976 47899999999999 999999999998632211 112345555544457899999999885
No 15
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.51 E-value=4.3e-14 Score=98.99 Aligned_cols=75 Identities=27% Similarity=0.263 Sum_probs=52.7
Q ss_pred CCcccCHHHHHHHHhC--CCeEEEeCChHHHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHhhccCCCCeEEEEcCCC
Q 032117 71 VPTSVPVRVAHELLQA--GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVVSPCI 147 (147)
Q Consensus 71 ~~~~Is~~el~~~~~~--~~~lIDVR~~~e~~~ghIpGAinip~~~~~~~~~~~~~~~l~~~~~~l~~d~~IVvyC~s~ 147 (147)
....|+++++.+++++ +.+|||||++.||..||||||+|+|+..... .....+. .......++++++||+||++|
T Consensus 6 ~~~~is~~el~~~~~~~~~~~ivDvR~~~e~~~~hIpgai~ip~~~~~~-~~~~~~~-~~~~~~~~~~~~~ivv~C~~G 82 (122)
T cd01526 6 PEERVSVKDYKNILQAGKKHVLLDVRPKVHFEICRLPEAINIPLSELLS-KAAELKS-LQELPLDNDKDSPIYVVCRRG 82 (122)
T ss_pred cccccCHHHHHHHHhCCCCeEEEEcCCHHHhhcccCCCCeEccHHHHhh-hhhhhhh-hhhcccccCCCCcEEEECCCC
Confidence 3567999999999875 3689999999999999999999999862111 0000000 000012247899999999875
No 16
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.51 E-value=4.9e-14 Score=95.31 Aligned_cols=61 Identities=25% Similarity=0.361 Sum_probs=49.1
Q ss_pred cCHHHHHHHHhCC---CeEEEeCChHHHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHhhcc---CCCCeEEEEcCCC
Q 032117 75 VPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF---RKHDEIIVVSPCI 147 (147)
Q Consensus 75 Is~~el~~~~~~~---~~lIDVR~~~e~~~ghIpGAinip~~~~~~~~~~~~~~~l~~~~~~l---~~d~~IVvyC~s~ 147 (147)
|+++++.++++.+ .+|||+|+++||+.+|||||+|+|+. .+......+ +++++||+||++|
T Consensus 2 i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~~hI~ga~~ip~~------------~~~~~~~~~~~~~~~~~vv~~c~~g 68 (101)
T cd01528 2 ISVAELAEWLADEREEPVLIDVREPEELEIAFLPGFLHLPMS------------EIPERSKELDSDNPDKDIVVLCHHG 68 (101)
T ss_pred CCHHHHHHHHhcCCCCCEEEECCCHHHHhcCcCCCCEecCHH------------HHHHHHHHhcccCCCCeEEEEeCCC
Confidence 7899999998754 68999999999999999999999985 222222233 4589999999875
No 17
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.50 E-value=8.3e-14 Score=92.81 Aligned_cols=61 Identities=26% Similarity=0.352 Sum_probs=51.6
Q ss_pred cCHHHHHHHHhC--CCeEEEeCChHHHhc--CCCCCeEEcCcccccCCCCCCCHHHHHHHhhccCCCCeEEEEcCCC
Q 032117 75 VPVRVAHELLQA--GHRYLDVRTPEEFSA--GHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVVSPCI 147 (147)
Q Consensus 75 Is~~el~~~~~~--~~~lIDVR~~~e~~~--ghIpGAinip~~~~~~~~~~~~~~~l~~~~~~l~~d~~IVvyC~s~ 147 (147)
|+++++++++++ +.+|||||++.||+. ||||||+|+|+. .+.+....++++++|||||++|
T Consensus 2 i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~ga~~ip~~------------~~~~~~~~~~~~~~ivv~c~~g 66 (96)
T cd01444 2 ISVDELAELLAAGEAPVLLDVRDPASYAALPDHIPGAIHLDED------------SLDDWLGDLDRDRPVVVYCYHG 66 (96)
T ss_pred cCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCCCCeeCCHH------------HHHHHHhhcCCCCCEEEEeCCC
Confidence 688999998876 379999999999999 999999999995 3344445578999999999875
No 18
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.48 E-value=9.8e-14 Score=95.95 Aligned_cols=73 Identities=25% Similarity=0.409 Sum_probs=56.2
Q ss_pred cCHHHHHHHHhCC-CeEEEeCChHHHhc-----------CCCCCeEEcCcccccCC-CCCCCHHHHHHHhhc--cCCCCe
Q 032117 75 VPVRVAHELLQAG-HRYLDVRTPEEFSA-----------GHATGAINVPYMYRVGS-GMTKNLKFVEEVSTR--FRKHDE 139 (147)
Q Consensus 75 Is~~el~~~~~~~-~~lIDVR~~~e~~~-----------ghIpGAinip~~~~~~~-~~~~~~~~l~~~~~~--l~~d~~ 139 (147)
++++++.++++++ .+|||||++.||.. ||||||+|+|+...... +..++++.+++.... ++++++
T Consensus 1 ~s~~~l~~~l~~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (118)
T cd01449 1 VTAEEVLANLDSGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLDEDGTFKSPEELRALFAALGITPDKP 80 (118)
T ss_pred CCHHHHHHhcCCCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCcccChHHhcCCCCCcCCHHHHHHHHHHcCCCCCCC
Confidence 5788999988754 89999999999976 99999999999743322 234455666655544 568999
Q ss_pred EEEEcCCC
Q 032117 140 IIVVSPCI 147 (147)
Q Consensus 140 IVvyC~s~ 147 (147)
||+||++|
T Consensus 81 iv~yc~~g 88 (118)
T cd01449 81 VIVYCGSG 88 (118)
T ss_pred EEEECCcH
Confidence 99999874
No 19
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.47 E-value=2.1e-13 Score=94.99 Aligned_cols=73 Identities=22% Similarity=0.204 Sum_probs=57.2
Q ss_pred cCHHHHHHHHhC-CCeEEEeCCh-------HHHhcCCCCCeEEcCcccccC-----CCCCCCHHHHHHHhhc--cCCCCe
Q 032117 75 VPVRVAHELLQA-GHRYLDVRTP-------EEFSAGHATGAINVPYMYRVG-----SGMTKNLKFVEEVSTR--FRKHDE 139 (147)
Q Consensus 75 Is~~el~~~~~~-~~~lIDVR~~-------~e~~~ghIpGAinip~~~~~~-----~~~~~~~~~l~~~~~~--l~~d~~ 139 (147)
++++++.+++++ +.+|||+|++ .+|+.||||||+|+|+..... .++..+.+.+.+.... ++++++
T Consensus 2 i~~~~l~~~l~~~~~~ivDvR~~~~~~~~~~~~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (122)
T cd01448 2 VSPDWLAEHLDDPDVRILDARWYLPDRDGRKEYLEGHIPGAVFFDLDEDLDDKSPGPHMLPSPEEFAELLGSLGISNDDT 81 (122)
T ss_pred cCHHHHHHHhCCCCeEEEEeecCCCCCchhhHHhhCCCCCCEEcChhhccccCCCCCCCCCCHHHHHHHHHHcCCCCCCE
Confidence 789999999876 5789999999 999999999999999864332 2445555555555443 678999
Q ss_pred EEEEcCCC
Q 032117 140 IIVVSPCI 147 (147)
Q Consensus 140 IVvyC~s~ 147 (147)
||+||+++
T Consensus 82 vv~~c~~g 89 (122)
T cd01448 82 VVVYDDGG 89 (122)
T ss_pred EEEECCCC
Confidence 99999873
No 20
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.47 E-value=1.7e-13 Score=108.93 Aligned_cols=135 Identities=21% Similarity=0.208 Sum_probs=85.9
Q ss_pred hhhhhhcccCCCceecCCCCcc-----eeeeeccccccccccccccCccccccccccccccch---------hh-cCCCc
Q 032117 9 LSSFAAGASSLPPVLCPHGNNR-----RGLLSLTVDQQRCDNIGFISSKILSFCPKASLRGNL---------EA-VGVPT 73 (147)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~~~~r~~i~~~~~~~~~~~~~~~~~~~~~---------~~-~~~~~ 73 (147)
+.+..+++.--..++-.+.+++ .|.|.+..+.+--.+.| +++.|....-..... .. -....
T Consensus 81 ~~~~~GI~~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdG----G~~~W~~~g~p~~~~~~~~~~~~f~~~~~~~~ 156 (285)
T COG2897 81 LLGELGIRNDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDG----GLPAWKAAGLPLETEPPEPPPTTFSAKYNVKA 156 (285)
T ss_pred HHHHcCCCCCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecC----CHHHHHHcCCCccCCCCCCCCccccccCCccc
Confidence 3344445544444555545444 56666666666333333 455554322111100 00 11123
Q ss_pred ccCHHHHHHHHhCC-CeEEEeCChHHHhc----------CCCCCeEEcCcccccCC-CCCCCHHHHHHHhhc--cCCCCe
Q 032117 74 SVPVRVAHELLQAG-HRYLDVRTPEEFSA----------GHATGAINVPYMYRVGS-GMTKNLKFVEEVSTR--FRKHDE 139 (147)
Q Consensus 74 ~Is~~el~~~~~~~-~~lIDVR~~~e~~~----------ghIpGAinip~~~~~~~-~~~~~~~~l~~~~~~--l~~d~~ 139 (147)
.++.++.+...+.. .+|||+|++++|.. ||||||+|+|+...+.+ ++.+.++.++.+... ++++++
T Consensus 157 ~~~~~~~~~~~~~~~~~liDaR~~~rf~G~~~ep~~~~~GHIPGAiNipw~~~~~~~~~~~~~~~~~~l~~~~gi~~~~~ 236 (285)
T COG2897 157 VVDATLVADALEVPAVLLIDARSPERFRGKEPEPRDGKAGHIPGAINIPWTDLVDDGGLFKSPEEIARLYADAGIDPDKE 236 (285)
T ss_pred cCCHHHHHHHhcCCCeEEEecCCHHHhCCCCCCCCCCCCCCCCCCcCcCHHHHhcCCCccCcHHHHHHHHHhcCCCCCCC
Confidence 56667777777654 78999999999987 99999999999877664 567777777777633 889999
Q ss_pred EEEEcCCC
Q 032117 140 IIVVSPCI 147 (147)
Q Consensus 140 IVvyC~s~ 147 (147)
||+||++|
T Consensus 237 vI~yCgsG 244 (285)
T COG2897 237 VIVYCGSG 244 (285)
T ss_pred EEEEcCCc
Confidence 99999997
No 21
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.46 E-value=2.1e-13 Score=91.85 Aligned_cols=69 Identities=20% Similarity=0.268 Sum_probs=48.2
Q ss_pred cCHHHHHHHHhC-CCeEEEeCChHHH-hcCCCCCeEEcCcccccCCCCCCCHHHHHHHhhccCCCCeEEEEcCCC
Q 032117 75 VPVRVAHELLQA-GHRYLDVRTPEEF-SAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVVSPCI 147 (147)
Q Consensus 75 Is~~el~~~~~~-~~~lIDVR~~~e~-~~ghIpGAinip~~~~~~~~~~~~~~~l~~~~~~l~~d~~IVvyC~s~ 147 (147)
|+++++.+++++ +.+|||+|++.+| ..||||||+|+|+.... ........+ ....++++++|||||+++
T Consensus 1 is~~el~~~~~~~~~~iiDvR~~~~~~~~ghIpga~~ip~~~~~-~~~~~~~~~---~~~~~~~~~~ivv~c~~g 71 (103)
T cd01447 1 LSPEDARALLGSPGVLLVDVRDPRELERTGMIPGAFHAPRGMLE-FWADPDSPY---HKPAFAEDKPFVFYCASG 71 (103)
T ss_pred CCHHHHHHHHhCCCeEEEECCCHHHHHhcCCCCCcEEcccchhh-hhcCccccc---cccCCCCCCeEEEEcCCC
Confidence 578999998875 5789999999998 57999999999985210 000000000 011367899999999875
No 22
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.46 E-value=9.9e-14 Score=94.08 Aligned_cols=70 Identities=24% Similarity=0.353 Sum_probs=48.6
Q ss_pred cCHHHHHHHHhC---CCeEEEeCChHHHhcCCCCCeEEcCcccccC--CCCCCCHHHHHHHhhccCCCCeEEEEcCCC
Q 032117 75 VPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMYRVG--SGMTKNLKFVEEVSTRFRKHDEIIVVSPCI 147 (147)
Q Consensus 75 Is~~el~~~~~~---~~~lIDVR~~~e~~~ghIpGAinip~~~~~~--~~~~~~~~~l~~~~~~l~~d~~IVvyC~s~ 147 (147)
||++++++++++ +++|||||++.||..||||||+|+|+..... +.+...+ ...++.. .++++||+||.+|
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~-~~~~~~~--~~~~~vv~~c~~g 75 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRRGHIEGSINIPFSSVFLKEGELEQLP-TVPRLEN--YKGKIIVIVSHSH 75 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECCCHHHHhCCccCCCEeCCHHHhccccccccccc-chHHHHh--hcCCeEEEEeCCC
Confidence 689999999975 3689999999999999999999999863221 1110000 0111111 2478999999875
No 23
>PRK07411 hypothetical protein; Validated
Probab=99.45 E-value=2.9e-13 Score=112.05 Aligned_cols=106 Identities=20% Similarity=0.219 Sum_probs=72.6
Q ss_pred eeeccccccccccccccCccccccccccccccch-hhcCCCcccCHHHHHHHHhCC---CeEEEeCChHHHhcCCCCCeE
Q 032117 33 LLSLTVDQQRCDNIGFISSKILSFCPKASLRGNL-EAVGVPTSVPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAI 108 (147)
Q Consensus 33 ~l~~~~~~~r~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Is~~el~~~~~~~---~~lIDVR~~~e~~~ghIpGAi 108 (147)
.+++++++.+..+..+. +|..||+........ ........|+++|+.++++.+ .+|||||++.||+.||||||+
T Consensus 243 ~~~~~~~~~c~~i~~~~--~~~~~~G~~~~~~~~~~~~~~~~~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~ghIpGAi 320 (390)
T PRK07411 243 ELKLRPNPERPVIEKLI--DYEQFCGIPQAKAAEAAQKAEIPEMTVTELKALLDSGADDFVLIDVRNPNEYEIARIPGSV 320 (390)
T ss_pred EEeccCCCCCCcccccc--chhhhcccccccccccccccccCccCHHHHHHHHhCCCCCeEEEECCCHHHhccCcCCCCE
Confidence 45677777765555444 677777654322111 123456789999999998753 589999999999999999999
Q ss_pred EcCcccccCCCCCCCHHHHHHHhhccCCCCeEEEEcCCC
Q 032117 109 NVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVVSPCI 147 (147)
Q Consensus 109 nip~~~~~~~~~~~~~~~l~~~~~~l~~d~~IVvyC~s~ 147 (147)
|+|+.+.... .... ....++++++||+||++|
T Consensus 321 niP~~~l~~~------~~~~-~l~~l~~d~~IVvyC~~G 352 (390)
T PRK07411 321 LVPLPDIENG------PGVE-KVKELLNGHRLIAHCKMG 352 (390)
T ss_pred EccHHHhhcc------cchH-HHhhcCCCCeEEEECCCC
Confidence 9999621110 0011 223467899999999986
No 24
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.44 E-value=3.2e-13 Score=91.70 Aligned_cols=72 Identities=24% Similarity=0.404 Sum_probs=51.0
Q ss_pred CHHHHHHHHhC-CCeEEEeCChHHHhcCCCCCeEEcCcccccCCCCCCCHHH----HHHHhhccCCCCeEEEEcCCC
Q 032117 76 PVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKF----VEEVSTRFRKHDEIIVVSPCI 147 (147)
Q Consensus 76 s~~el~~~~~~-~~~lIDVR~~~e~~~ghIpGAinip~~~~~~~~~~~~~~~----l~~~~~~l~~d~~IVvyC~s~ 147 (147)
|++|+++++++ +.+|||+|++.+|..||||||+|+|+............+. +......++++++||+||.++
T Consensus 1 s~~el~~~l~~~~~~liD~R~~~~~~~~hI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~ 77 (113)
T PF00581_consen 1 SPEELKEMLENESVLLIDVRSPEEYERGHIPGAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSG 77 (113)
T ss_dssp -HHHHHHHHTTTTEEEEEESSHHHHHHSBETTEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSS
T ss_pred CHHHHHhhhhCCCeEEEEeCCHHHHHcCCCCCCccccccccccccccccccccccccccccccccccccceeeeecc
Confidence 68999999943 4899999999999999999999999964311221122222 223333468889999999653
No 25
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.42 E-value=3.5e-13 Score=93.10 Aligned_cols=65 Identities=20% Similarity=0.299 Sum_probs=48.4
Q ss_pred cccCHHHHHHHHhCC-------CeEEEeCChHHHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHhhcc--CCCCeEEEE
Q 032117 73 TSVPVRVAHELLQAG-------HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEIIVV 143 (147)
Q Consensus 73 ~~Is~~el~~~~~~~-------~~lIDVR~~~e~~~ghIpGAinip~~~~~~~~~~~~~~~l~~~~~~l--~~d~~IVvy 143 (147)
..|++++++++++++ .+|||||++ ||..||||||+|+|+.. + .+.+.+....+ .++++||+|
T Consensus 2 ~~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgAi~ip~~~-~-------~~~~~~~~~~~~~~~~~~iv~~ 72 (113)
T cd01443 2 KYISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGSINLPAQS-C-------YQTLPQVYALFSLAGVKLAIFY 72 (113)
T ss_pred cccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCceecchhH-H-------HHHHHHHHHHhhhcCCCEEEEE
Confidence 358999999999764 689999999 99999999999999962 1 11122222222 356799999
Q ss_pred cCC
Q 032117 144 SPC 146 (147)
Q Consensus 144 C~s 146 (147)
|++
T Consensus 73 C~~ 75 (113)
T cd01443 73 CGS 75 (113)
T ss_pred CCC
Confidence 985
No 26
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.40 E-value=8.9e-13 Score=109.18 Aligned_cols=99 Identities=20% Similarity=0.309 Sum_probs=71.8
Q ss_pred eeccccccccccccccCccccccccccccccchhhcCCCcccCHHHHHHHHhCC--CeEEEeCChHHHhcCCCCCeEEcC
Q 032117 34 LSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVP 111 (147)
Q Consensus 34 l~~~~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Is~~el~~~~~~~--~~lIDVR~~~e~~~ghIpGAinip 111 (147)
+++++++.+..+..+. .|..||...+... ........|+++|++++++++ .+|||||++.||+.||||||+|+|
T Consensus 252 ~~~~~~~~C~~~~~~~--~~~~~c~~~~~~~--~~~~~~~~Is~~el~~~l~~~~~~~lIDvR~~~ef~~ghIpGAinip 327 (392)
T PRK07878 252 IKIRKDPSTPKITELI--DYEAFCGVVSDEA--QQAAAGSTITPRELKEWLDSGKKIALIDVREPVEWDIVHIPGAQLIP 327 (392)
T ss_pred EeeccCCCCCcccccc--cchhhcccccccc--cccCCCCccCHHHHHHHHhCCCCeEEEECCCHHHHhcCCCCCCEEcC
Confidence 6777788764454433 5677776543211 123345689999999999764 589999999999999999999999
Q ss_pred cccccCCCCCCCHHHHH-HHhhccCCCCeEEEEcCCC
Q 032117 112 YMYRVGSGMTKNLKFVE-EVSTRFRKHDEIIVVSPCI 147 (147)
Q Consensus 112 ~~~~~~~~~~~~~~~l~-~~~~~l~~d~~IVvyC~s~ 147 (147)
+.. +.. +....++++++||+||++|
T Consensus 328 ~~~-----------l~~~~~~~~l~~d~~iVvyC~~G 353 (392)
T PRK07878 328 KSE-----------ILSGEALAKLPQDRTIVLYCKTG 353 (392)
T ss_pred hHH-----------hcchhHHhhCCCCCcEEEEcCCC
Confidence 962 211 1234578999999999975
No 27
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.39 E-value=5.7e-13 Score=91.94 Aligned_cols=64 Identities=16% Similarity=0.291 Sum_probs=48.3
Q ss_pred cccCHHHHHHHHhCC---CeEEEeCChHHHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHhhc--cCCCCeEEEEcC
Q 032117 73 TSVPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVVSP 145 (147)
Q Consensus 73 ~~Is~~el~~~~~~~---~~lIDVR~~~e~~~ghIpGAinip~~~~~~~~~~~~~~~l~~~~~~--l~~d~~IVvyC~ 145 (147)
..|+++++++++..+ .+|||||++ ||..||||||+|+|+.... ..+.++... .+++++||+||.
T Consensus 2 ~~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~~hi~gA~~ip~~~l~--------~~~~~~~~~~~~~~~~~iv~yC~ 70 (113)
T cd01531 2 SYISPAQLKGWIRNGRPPFQVVDVRDE-DYAGGHIKGSWHYPSTRFK--------AQLNQLVQLLSGSKKDTVVFHCA 70 (113)
T ss_pred CcCCHHHHHHHHHcCCCCEEEEEcCCc-ccCCCcCCCCEecCHHHHh--------hCHHHHHHHHhcCCCCeEEEEee
Confidence 468999999998753 579999999 9999999999999996210 112222222 267889999997
No 28
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.39 E-value=6.9e-13 Score=88.86 Aligned_cols=56 Identities=20% Similarity=0.283 Sum_probs=41.6
Q ss_pred CCCeEEEeCChHHHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHhhccCCCCeEEEEcCCC
Q 032117 86 AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVVSPCI 147 (147)
Q Consensus 86 ~~~~lIDVR~~~e~~~ghIpGAinip~~~~~~~~~~~~~~~l~~~~~~l~~d~~IVvyC~s~ 147 (147)
.+.+|||||++.+|+.||||||+|+|+... ....+.++. ....+++++||+||.++
T Consensus 11 ~~~~iiDvR~~~~~~~~hIpgA~~ip~~~~-----~~~~~~~~~-~~~~~~~~~ivv~c~~g 66 (96)
T cd01529 11 PGTALLDVRAEDEYAAGHLPGKRSIPGAAL-----VLRSQELQA-LEAPGRATRYVLTCDGS 66 (96)
T ss_pred CCeEEEeCCCHHHHcCCCCCCcEeCCHHHh-----cCCHHHHHH-hhcCCCCCCEEEEeCCh
Confidence 357999999999999999999999998521 112233322 23357899999999875
No 29
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.36 E-value=1.5e-12 Score=86.90 Aligned_cols=51 Identities=24% Similarity=0.339 Sum_probs=39.4
Q ss_pred CCCeEEEeCChHHHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHhhcc-CCCCeEEEEcCCC
Q 032117 86 AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF-RKHDEIIVVSPCI 147 (147)
Q Consensus 86 ~~~~lIDVR~~~e~~~ghIpGAinip~~~~~~~~~~~~~~~l~~~~~~l-~~d~~IVvyC~s~ 147 (147)
++.+|||||++.||..+|||||+|+|+. .+.......+ +++++||+||.+|
T Consensus 9 ~~~~liDvR~~~e~~~~hi~ga~~ip~~-----------~~~~~~~~~~~~~~~~ivl~c~~G 60 (92)
T cd01532 9 EEIALIDVREEDPFAQSHPLWAANLPLS-----------RLELDAWVRIPRRDTPIVVYGEGG 60 (92)
T ss_pred CCeEEEECCCHHHHhhCCcccCeeCCHH-----------HHHhhhHhhCCCCCCeEEEEeCCC
Confidence 3488999999999999999999999985 2221222224 3589999999985
No 30
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.33 E-value=6.1e-12 Score=92.61 Aligned_cols=75 Identities=16% Similarity=0.210 Sum_probs=51.1
Q ss_pred CCcccCHHHHHHHHhCC-CeEEEeCChH----HHhcC---------CCCCeEEcCcccccCCCCCC--CHHHHHHHhhc-
Q 032117 71 VPTSVPVRVAHELLQAG-HRYLDVRTPE----EFSAG---------HATGAINVPYMYRVGSGMTK--NLKFVEEVSTR- 133 (147)
Q Consensus 71 ~~~~Is~~el~~~~~~~-~~lIDVR~~~----e~~~g---------hIpGAinip~~~~~~~~~~~--~~~~l~~~~~~- 133 (147)
....|+++|++++++++ .+|||||++. ||..| |||||+|+|+.. .. .+.. .+.+.+.+...
T Consensus 34 ~~~~vs~~el~~~l~~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGAv~ip~~~-~~-~l~~~~~~~~~~~l~~~~ 111 (162)
T TIGR03865 34 GARVLDTEAAQALLARGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGSLWLPNTG-YG-NLAPAWQAYFRRGLERAT 111 (162)
T ss_pred CccccCHHHHHHHHhCCCcEEEECCCCccccccccccceeccccCCCCCCcEEecccC-CC-CCCCchhHHHHHHHHHhc
Confidence 46789999999999765 7899999865 45444 999999999631 11 1111 11233332222
Q ss_pred -cCCCCeEEEEcCCC
Q 032117 134 -FRKHDEIIVVSPCI 147 (147)
Q Consensus 134 -l~~d~~IVvyC~s~ 147 (147)
.++|++||+||++|
T Consensus 112 ~~~~d~~IVvYC~~G 126 (162)
T TIGR03865 112 GGDKDRPLVFYCLAD 126 (162)
T ss_pred CCCCCCEEEEEECCC
Confidence 26899999999975
No 31
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.33 E-value=3.8e-12 Score=104.82 Aligned_cols=64 Identities=23% Similarity=0.323 Sum_probs=53.6
Q ss_pred CcccCHHHHHHHHhCCCeEEEeCChHHHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHhhc--cCCCCeEEEEcCCC
Q 032117 72 PTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVVSPCI 147 (147)
Q Consensus 72 ~~~Is~~el~~~~~~~~~lIDVR~~~e~~~ghIpGAinip~~~~~~~~~~~~~~~l~~~~~~--l~~d~~IVvyC~s~ 147 (147)
++.|+++++.++++++.+|||||++.||..||||||+|+|+. .+.+.... .+++++||+||++|
T Consensus 2 v~~is~~el~~~l~~~~~ivDvR~~~e~~~ghIpgAi~ip~~------------~l~~~~~~~~~~~~~~IvvyC~~G 67 (376)
T PRK08762 2 IREISPAEARARAAQGAVLIDVREAHERASGQAEGALRIPRG------------FLELRIETHLPDRDREIVLICASG 67 (376)
T ss_pred CceeCHHHHHHHHhCCCEEEECCCHHHHhCCcCCCCEECCHH------------HHHHHHhhhcCCCCCeEEEEcCCC
Confidence 457999999999988889999999999999999999999995 33333332 36899999999975
No 32
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.33 E-value=3.3e-12 Score=100.40 Aligned_cols=71 Identities=15% Similarity=0.119 Sum_probs=52.2
Q ss_pred CCcccCHHHHHHHHhCC-------CeEEEeCChHHHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHhhccCCCCeEEEE
Q 032117 71 VPTSVPVRVAHELLQAG-------HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVV 143 (147)
Q Consensus 71 ~~~~Is~~el~~~~~~~-------~~lIDVR~~~e~~~ghIpGAinip~~~~~~~~~~~~~~~l~~~~~~l~~d~~IVvy 143 (147)
....++++++.++++++ .+|||||++.||+.||||||+|+|+.... ..++.+.+....+ ++++||+|
T Consensus 108 ~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GAiniPl~~f~-----~~~~~l~~~~~~~-kdk~Ivvy 181 (257)
T PRK05320 108 RAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGALDYRIDKFT-----EFPEALAAHRADL-AGKTVVSF 181 (257)
T ss_pred cCceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCCEeCChhHhh-----hhHHHHHhhhhhc-CCCeEEEE
Confidence 35679999999988652 68999999999999999999999996210 0111222222223 78999999
Q ss_pred cCCC
Q 032117 144 SPCI 147 (147)
Q Consensus 144 C~s~ 147 (147)
|.+|
T Consensus 182 C~~G 185 (257)
T PRK05320 182 CTGG 185 (257)
T ss_pred CCCC
Confidence 9986
No 33
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.32 E-value=2.4e-12 Score=104.04 Aligned_cols=74 Identities=14% Similarity=0.172 Sum_probs=58.9
Q ss_pred ccCHHHHHHHHhC-CCeEEEeCChHHH-----------hcCCCCCeEEcCcccccC-CCCCCCHHHHHHHhhc--cCCCC
Q 032117 74 SVPVRVAHELLQA-GHRYLDVRTPEEF-----------SAGHATGAINVPYMYRVG-SGMTKNLKFVEEVSTR--FRKHD 138 (147)
Q Consensus 74 ~Is~~el~~~~~~-~~~lIDVR~~~e~-----------~~ghIpGAinip~~~~~~-~~~~~~~~~l~~~~~~--l~~d~ 138 (147)
.++.+++.+.+++ +.+|||+|++.|| ..||||||+|+|+...+. ++..+..+.++..... +++++
T Consensus 191 ~~~~~~v~~~~~~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAvnip~~~~~~~~~~~~~~~el~~~~~~~gi~~~~ 270 (320)
T PLN02723 191 VWTLEQVKKNIEDKTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSKCVPFPQMLDSSQTLLPAEELKKRFEQEGISLDS 270 (320)
T ss_pred eecHHHHHHhhcCCCeEEEECCCcccccCCCCCCCCCCcCCcCCCCcccCHHHhcCCCCCCCCHHHHHHHHHhcCCCCCC
Confidence 3688899888865 4789999999998 469999999999975443 3556677777776653 68899
Q ss_pred eEEEEcCCC
Q 032117 139 EIIVVSPCI 147 (147)
Q Consensus 139 ~IVvyC~s~ 147 (147)
+||+||++|
T Consensus 271 ~iv~yC~sG 279 (320)
T PLN02723 271 PIVASCGTG 279 (320)
T ss_pred CEEEECCcH
Confidence 999999985
No 34
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.32 E-value=4e-12 Score=86.78 Aligned_cols=49 Identities=29% Similarity=0.508 Sum_probs=39.4
Q ss_pred CCeEEEeCChHHHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHhhc--cCCCCeEEEEcCCC
Q 032117 87 GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVVSPCI 147 (147)
Q Consensus 87 ~~~lIDVR~~~e~~~ghIpGAinip~~~~~~~~~~~~~~~l~~~~~~--l~~d~~IVvyC~s~ 147 (147)
...+||+|+++||..||||||+|+|+. ++ ...... .+++++||+||++|
T Consensus 18 ~~~lIDvR~~~ef~~ghIpgAinip~~-----------~l-~~~l~~~~~~~~~~vvlyC~~G 68 (101)
T TIGR02981 18 AEHWIDVRIPEQYQQEHIQGAINIPLK-----------EI-KEHIATAVPDKNDTVKLYCNAG 68 (101)
T ss_pred CCEEEECCCHHHHhcCCCCCCEECCHH-----------HH-HHHHHHhCCCCCCeEEEEeCCC
Confidence 478999999999999999999999995 23 333332 35778999999986
No 35
>PRK01415 hypothetical protein; Validated
Probab=99.31 E-value=3.7e-12 Score=99.47 Aligned_cols=70 Identities=17% Similarity=0.117 Sum_probs=53.1
Q ss_pred CcccCHHHHHHHHhC-CCeEEEeCChHHHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHhhccCCCCeEEEEcCCC
Q 032117 72 PTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVVSPCI 147 (147)
Q Consensus 72 ~~~Is~~el~~~~~~-~~~lIDVR~~~e~~~ghIpGAinip~~~~~~~~~~~~~~~l~~~~~~l~~d~~IVvyC~s~ 147 (147)
-..|+++++.+++++ +.+|||||++.||+.||||||+|+|..... ..+..+.. ...++++++|++||.+|
T Consensus 111 g~~i~p~e~~~ll~~~~~vvIDVRn~~E~~~Ghi~gAinip~~~f~-----e~~~~~~~-~~~~~k~k~Iv~yCtgG 181 (247)
T PRK01415 111 GEYIEPKDWDEFITKQDVIVIDTRNDYEVEVGTFKSAINPNTKTFK-----QFPAWVQQ-NQELLKGKKIAMVCTGG 181 (247)
T ss_pred ccccCHHHHHHHHhCCCcEEEECCCHHHHhcCCcCCCCCCChHHHh-----hhHHHHhh-hhhhcCCCeEEEECCCC
Confidence 457999999999975 589999999999999999999999985110 00111111 23367899999999986
No 36
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.31 E-value=7.5e-12 Score=89.80 Aligned_cols=72 Identities=18% Similarity=0.207 Sum_probs=54.2
Q ss_pred cCHHHHHHHHh-----CCCeEEEeCCh--------HHHhc------------CCCCCeEEcCcccccC-C----CCCCCH
Q 032117 75 VPVRVAHELLQ-----AGHRYLDVRTP--------EEFSA------------GHATGAINVPYMYRVG-S----GMTKNL 124 (147)
Q Consensus 75 Is~~el~~~~~-----~~~~lIDVR~~--------~e~~~------------ghIpGAinip~~~~~~-~----~~~~~~ 124 (147)
||++++++.++ ++.+|||+|.. .+|.. ||||||+|+|+..... + .+.+++
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~~~~~~~~~~~p~~ 80 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGASFFDFEECLDEAGFEESMEPSE 80 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhhCcCCCCCCCCCCH
Confidence 58899999987 24889999976 88987 9999999999864322 1 234445
Q ss_pred HHHHHHhhc--cCCCCeEEEEcCC
Q 032117 125 KFVEEVSTR--FRKHDEIIVVSPC 146 (147)
Q Consensus 125 ~~l~~~~~~--l~~d~~IVvyC~s 146 (147)
+.+++.... ++++++||+||.+
T Consensus 81 ~~~~~~~~~~GI~~~~~vVvY~~~ 104 (138)
T cd01445 81 AEFAAMFEAKGIDLDKHLIATDGD 104 (138)
T ss_pred HHHHHHHHHcCCCCCCeEEEECCC
Confidence 555665554 6789999999974
No 37
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.30 E-value=4.7e-12 Score=86.89 Aligned_cols=49 Identities=29% Similarity=0.522 Sum_probs=39.2
Q ss_pred CCeEEEeCChHHHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHhhcc--CCCCeEEEEcCCC
Q 032117 87 GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEIIVVSPCI 147 (147)
Q Consensus 87 ~~~lIDVR~~~e~~~ghIpGAinip~~~~~~~~~~~~~~~l~~~~~~l--~~d~~IVvyC~s~ 147 (147)
...|||+|+++||+.||||||+|+|+. ++ ......+ +++++||+||++|
T Consensus 20 ~~~lIDvR~~~ef~~ghIpGAiniP~~-----------~l-~~~l~~l~~~~~~~IVlyC~~G 70 (104)
T PRK10287 20 AEHWIDVRVPEQYQQEHVQGAINIPLK-----------EV-KERIATAVPDKNDTVKLYCNAG 70 (104)
T ss_pred CCEEEECCCHHHHhcCCCCccEECCHH-----------HH-HHHHHhcCCCCCCeEEEEeCCC
Confidence 368999999999999999999999995 33 3333333 5678999999875
No 38
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.30 E-value=8e-12 Score=99.10 Aligned_cols=75 Identities=16% Similarity=0.145 Sum_probs=58.1
Q ss_pred cccCHHHHHHHHhCC-CeEEEeCC----------hHHHhcCCCCCeEEcCcccccCC-----CCCCCHHHHHHHhhc--c
Q 032117 73 TSVPVRVAHELLQAG-HRYLDVRT----------PEEFSAGHATGAINVPYMYRVGS-----GMTKNLKFVEEVSTR--F 134 (147)
Q Consensus 73 ~~Is~~el~~~~~~~-~~lIDVR~----------~~e~~~ghIpGAinip~~~~~~~-----~~~~~~~~l~~~~~~--l 134 (147)
..|+++++++.++++ .+|||+|+ +.+|..||||||+|+|+...... .+...++.+++.... +
T Consensus 5 ~lvs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi 84 (281)
T PRK11493 5 WFVAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEALSDHTSPLPHMMPRPETFAVAMRELGV 84 (281)
T ss_pred cccCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHhcCCCCCCCCCCCCHHHHHHHHHHcCC
Confidence 358999999999764 88999996 78999999999999998643221 234455666666655 5
Q ss_pred CCCCeEEEEcCCC
Q 032117 135 RKHDEIIVVSPCI 147 (147)
Q Consensus 135 ~~d~~IVvyC~s~ 147 (147)
+++++||+||.++
T Consensus 85 ~~d~~VVvyc~~~ 97 (281)
T PRK11493 85 NQDKHLVVYDEGN 97 (281)
T ss_pred CCCCEEEEECCCC
Confidence 7899999999863
No 39
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.27 E-value=7.1e-12 Score=99.39 Aligned_cols=74 Identities=22% Similarity=0.240 Sum_probs=56.1
Q ss_pred ccCHHHHHHHHhC-CCeEEEeCChHHHh-----------cCCCCCeEEcCcccccCCCCCCCHHHHHHHhhc--cCCCCe
Q 032117 74 SVPVRVAHELLQA-GHRYLDVRTPEEFS-----------AGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDE 139 (147)
Q Consensus 74 ~Is~~el~~~~~~-~~~lIDVR~~~e~~-----------~ghIpGAinip~~~~~~~~~~~~~~~l~~~~~~--l~~d~~ 139 (147)
.++.+++...+++ +.+|||+|++.||. .||||||+|+|+......+....++.++..+.. ++++++
T Consensus 154 ~~~~~~v~~~~~~~~~~llD~R~~~e~~G~~~~~~~~~~~GhIpgA~~i~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 233 (281)
T PRK11493 154 VVRLTDVLLASHEKTAQIVDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGELKTTDELDAIFFGRGVSFDRP 233 (281)
T ss_pred eecHHHHHHhhcCCCcEEEeCCCccceeeeccCCCCCcccccCCCcCCCCHHHhcCCCCcCCHHHHHHHHHhcCCCCCCC
Confidence 4456666666655 47899999999995 699999999999765544445566666666543 678999
Q ss_pred EEEEcCCC
Q 032117 140 IIVVSPCI 147 (147)
Q Consensus 140 IVvyC~s~ 147 (147)
||+||++|
T Consensus 234 ii~yC~~G 241 (281)
T PRK11493 234 IIASCGSG 241 (281)
T ss_pred EEEECCcH
Confidence 99999985
No 40
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.26 E-value=1.3e-11 Score=87.25 Aligned_cols=72 Identities=18% Similarity=0.147 Sum_probs=51.1
Q ss_pred ccCHHHHHHHHhC---CCeEEEeCChHHHhcCCCCCeEEcCcccccCC----------CCCCCHHHHHHHhhccCCCCeE
Q 032117 74 SVPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMYRVGS----------GMTKNLKFVEEVSTRFRKHDEI 140 (147)
Q Consensus 74 ~Is~~el~~~~~~---~~~lIDVR~~~e~~~ghIpGAinip~~~~~~~----------~~~~~~~~l~~~~~~l~~d~~I 140 (147)
.|+++++.++++. +.+|||||++.+|..||||||+|+|+...... .+...++....+.. . ++++|
T Consensus 1 ~is~~~l~~~l~~~~~~~~iiDvR~~~~~~~~hI~~ai~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-~~~~V 78 (132)
T cd01446 1 TIDCAWLAALLREGGERLLLLDCRPFLEYSSSHIRGAVNVCCPTILRRRLQGGKILLQQLLSCPEDRDRLRR-G-ESLAV 78 (132)
T ss_pred CcCHHHHHHHHhcCCCCEEEEECCCHHHHhhCcccCcEecChHHHHHHhhcccchhhhhhcCCHHHHHHHhc-C-CCCeE
Confidence 3789999999974 37899999999999999999999998732110 01222222222222 2 67899
Q ss_pred EEEcCCC
Q 032117 141 IVVSPCI 147 (147)
Q Consensus 141 VvyC~s~ 147 (147)
||||.++
T Consensus 79 VvYd~~~ 85 (132)
T cd01446 79 VVYDESS 85 (132)
T ss_pred EEEeCCC
Confidence 9999864
No 41
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.26 E-value=1.7e-11 Score=80.81 Aligned_cols=62 Identities=31% Similarity=0.474 Sum_probs=42.5
Q ss_pred CCCeEEEeCChHHHhcCCCCCeEEcCcccccCC-CCCCCHHHHHHHh-hccCCCCeEEEEcCCC
Q 032117 86 AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGS-GMTKNLKFVEEVS-TRFRKHDEIIVVSPCI 147 (147)
Q Consensus 86 ~~~~lIDVR~~~e~~~ghIpGAinip~~~~~~~-~~~~~~~~l~~~~-~~l~~d~~IVvyC~s~ 147 (147)
++.+|||+|++.||..||||||+|+|+...... .......+..... ...+++++||+||.++
T Consensus 3 ~~~~ivDvR~~~e~~~~hi~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g 66 (100)
T smart00450 3 EKVVLLDVRSPEEYEGGHIPGAVNIPLSELLDRRGELDILEFEELLKRLGLDKDKPVVVYCRSG 66 (100)
T ss_pred CCEEEEECCCHHHhccCCCCCceeCCHHHhccCCCCcCHHHHHHHHHHcCCCCCCeEEEEeCCC
Confidence 357899999999999999999999999743222 1111111222222 2367889999999875
No 42
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.25 E-value=1.4e-11 Score=99.37 Aligned_cols=68 Identities=21% Similarity=0.212 Sum_probs=52.5
Q ss_pred CcccCHHHHHHHHhC-CCeEEEeCChHHHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHhh--ccCCCCeEEEEcCCC
Q 032117 72 PTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST--RFRKHDEIIVVSPCI 147 (147)
Q Consensus 72 ~~~Is~~el~~~~~~-~~~lIDVR~~~e~~~ghIpGAinip~~~~~~~~~~~~~~~l~~~~~--~l~~d~~IVvyC~s~ 147 (147)
...++++++.+++++ +.+|||||++.||+.||||||+|+|+... .++..++.. ...++++||+||.+|
T Consensus 111 ~~~is~~el~~~l~~~~~vlIDVR~~~E~~~GhI~GAi~ip~~~~--------~~~~~~l~~~~~~~kdk~IvvyC~~G 181 (314)
T PRK00142 111 GTYLKPKEVNELLDDPDVVFIDMRNDYEYEIGHFENAIEPDIETF--------REFPPWVEENLDPLKDKKVVMYCTGG 181 (314)
T ss_pred CcccCHHHHHHHhcCCCeEEEECCCHHHHhcCcCCCCEeCCHHHh--------hhhHHHHHHhcCCCCcCeEEEECCCC
Confidence 467999999998876 48999999999999999999999999621 112222211 245889999999986
No 43
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.25 E-value=1.2e-11 Score=89.41 Aligned_cols=56 Identities=14% Similarity=0.194 Sum_probs=45.4
Q ss_pred HHHHHhCC--CeEEEeCChHHHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHhhccCCCCeEEEEcCCC
Q 032117 80 AHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVVSPCI 147 (147)
Q Consensus 80 l~~~~~~~--~~lIDVR~~~e~~~ghIpGAinip~~~~~~~~~~~~~~~l~~~~~~l~~d~~IVvyC~s~ 147 (147)
+.+++.++ .+|||||++.+|..||||||+|+|.. .+.+....++++++|||||.++
T Consensus 2 l~~~l~~~~~~~ivDvR~~~e~~~gHIpgAi~~~~~------------~l~~~l~~l~~~~~vVv~c~~g 59 (145)
T cd01535 2 LAAWLGEGGQTAVVDVTASANYVKRHIPGAWWVLRA------------QLAQALEKLPAAERYVLTCGSS 59 (145)
T ss_pred hHHHHhCCCCeEEEECCCHHHHHcCCCCCceeCCHH------------HHHHHHHhcCCCCCEEEEeCCC
Confidence 45566544 68999999999999999999999984 4555555678889999999874
No 44
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.24 E-value=1.9e-11 Score=100.66 Aligned_cols=67 Identities=13% Similarity=0.198 Sum_probs=48.9
Q ss_pred ccCHHHHHHHHhCC-CeEEEeCChHHHhcCCCC---CeEEcCcccccCCCCCCCHHHHHHHhhccCCCCeEEEEcCCC
Q 032117 74 SVPVRVAHELLQAG-HRYLDVRTPEEFSAGHAT---GAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVVSPCI 147 (147)
Q Consensus 74 ~Is~~el~~~~~~~-~~lIDVR~~~e~~~ghIp---GAinip~~~~~~~~~~~~~~~l~~~~~~l~~d~~IVvyC~s~ 147 (147)
.++++++.++++++ .+|||||+++||+.|||| ||+|||+.... . ..++. +....++++ +|||||++|
T Consensus 272 ~~~~~el~~~l~~~~~~lIDVR~~~E~~~ghI~~~~gAinIPl~~l~-~----~~~~~-~~l~~~~~~-~Ivv~C~sG 342 (370)
T PRK05600 272 RTDTTSLIDATLNGSATLLDVREPHEVLLKDLPEGGASLKLPLSAIT-D----DADIL-HALSPIDGD-NVVVYCASG 342 (370)
T ss_pred ccCHHHHHHHHhcCCeEEEECCCHHHhhhccCCCCCccEeCcHHHhh-c----chhhh-hhccccCCC-cEEEECCCC
Confidence 68999999999875 689999999999999998 59999996210 0 00011 112224455 999999987
No 45
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.23 E-value=2.1e-11 Score=79.32 Aligned_cols=57 Identities=39% Similarity=0.581 Sum_probs=43.2
Q ss_pred HHHHHh-CCCeEEEeCChHHHhcCCCCCeEEcCcccccCCCCCCCHHHHHH-HhhccCCCCeEEEEcCCC
Q 032117 80 AHELLQ-AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEE-VSTRFRKHDEIIVVSPCI 147 (147)
Q Consensus 80 l~~~~~-~~~~lIDVR~~~e~~~ghIpGAinip~~~~~~~~~~~~~~~l~~-~~~~l~~d~~IVvyC~s~ 147 (147)
+.++++ ++..|||+|++.+|+.+|||||+|+|+. +.... .....+++++||+||.++
T Consensus 2 ~~~~~~~~~~~iiD~R~~~~~~~~~i~ga~~~~~~-----------~~~~~~~~~~~~~~~~vv~~c~~~ 60 (89)
T cd00158 2 LKELLDDEDAVLLDVREPEEYAAGHIPGAINIPLS-----------ELEERAALLELDKDKPIVVYCRSG 60 (89)
T ss_pred hHHHhcCCCeEEEECCCHHHHhccccCCCEecchH-----------HHhhHHHhhccCCCCeEEEEeCCC
Confidence 344443 3589999999999999999999999996 22222 133467899999999864
No 46
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.22 E-value=3.3e-11 Score=104.79 Aligned_cols=75 Identities=17% Similarity=0.105 Sum_probs=58.9
Q ss_pred cccCHHHHHHHHhCC-CeEEEeCChHHHhcCCCCCeEEcCcccccC-----CCCCCCHHHHHHHhhc--cCCCCeEEEEc
Q 032117 73 TSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVG-----SGMTKNLKFVEEVSTR--FRKHDEIIVVS 144 (147)
Q Consensus 73 ~~Is~~el~~~~~~~-~~lIDVR~~~e~~~ghIpGAinip~~~~~~-----~~~~~~~~~l~~~~~~--l~~d~~IVvyC 144 (147)
..|++++++++++++ ++|||+|++.+|..||||||+|+++..... .++.+.++.+++.... +++|++||+||
T Consensus 9 ~lIs~~eL~~~l~~~~vvIIDvR~~~eY~~GHIPGAv~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~lGI~~d~~VVvYd 88 (610)
T PRK09629 9 LVIEPNDLLERLDAPELILVDLTSSARYEAGHIRGARFVDPKRTQLGKPPAPGLLPDTADLEQLFGELGHNPDAVYVVYD 88 (610)
T ss_pred ceecHHHHHHHhcCCCEEEEECCChHHHHhCCCCCcEEcChhHhhccCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEEC
Confidence 469999999999864 889999999999999999999999853211 2445555556666555 57899999999
Q ss_pred CCC
Q 032117 145 PCI 147 (147)
Q Consensus 145 ~s~ 147 (147)
+++
T Consensus 89 ~~g 91 (610)
T PRK09629 89 DEG 91 (610)
T ss_pred CCC
Confidence 864
No 47
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.21 E-value=2.8e-11 Score=105.19 Aligned_cols=74 Identities=20% Similarity=0.274 Sum_probs=58.7
Q ss_pred ccCHHHHHHHHhC-CCeEEEeCChHHHh--------cCCCCCeEEcCcccccC-CCCCCCHHHHHHHhhc--cCCCCeEE
Q 032117 74 SVPVRVAHELLQA-GHRYLDVRTPEEFS--------AGHATGAINVPYMYRVG-SGMTKNLKFVEEVSTR--FRKHDEII 141 (147)
Q Consensus 74 ~Is~~el~~~~~~-~~~lIDVR~~~e~~--------~ghIpGAinip~~~~~~-~~~~~~~~~l~~~~~~--l~~d~~IV 141 (147)
.++.+++++.+++ +.+|||+|+++||. .||||||+|+|+...+. .+..+.++.++++... ++++++||
T Consensus 148 ~v~~e~v~~~l~~~~~~iIDaR~~~ef~G~~~~~~r~GHIPGAvnip~~~~~~~~~~lk~~~el~~~~~~~Gi~~~~~VV 227 (610)
T PRK09629 148 TATREYLQSRLGAADLAIWDARAPTEYSGEKVVAAKGGHIPGAVNFEWTAGMDKARNLRIRQDMPEILRDLGITPDKEVI 227 (610)
T ss_pred cccHHHHHHhhCCCCcEEEECCCccccCCcccccccCCCCCCCeecCHHHhcCCCCCCCCHHHHHHHHHHcCCCCCCCEE
Confidence 5788999998865 47899999999994 79999999999864433 3445566667776654 57899999
Q ss_pred EEcCCC
Q 032117 142 VVSPCI 147 (147)
Q Consensus 142 vyC~s~ 147 (147)
+||++|
T Consensus 228 vYC~sG 233 (610)
T PRK09629 228 THCQTH 233 (610)
T ss_pred EECCCC
Confidence 999986
No 48
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.20 E-value=4.2e-11 Score=81.25 Aligned_cols=50 Identities=34% Similarity=0.547 Sum_probs=40.6
Q ss_pred CCCeEEEeCChHHHhcCCCCC-eEEcCcccccCCCCCCCHHHHHHHhhc--cCCCCeEEEEcCCC
Q 032117 86 AGHRYLDVRTPEEFSAGHATG-AINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVVSPCI 147 (147)
Q Consensus 86 ~~~~lIDVR~~~e~~~ghIpG-Ainip~~~~~~~~~~~~~~~l~~~~~~--l~~d~~IVvyC~s~ 147 (147)
++.+|||||++.||+.+|||| ++|+|..+ +.+.... ++++++|||||++|
T Consensus 19 ~~~~liDvR~~~e~~~~~i~~~~~~ip~~~------------~~~~~~~~~~~~~~~ivv~C~~G 71 (110)
T COG0607 19 EDAVLLDVREPEEYERGHIPGAAINIPLSE------------LKAAENLLELPDDDPIVVYCASG 71 (110)
T ss_pred CCCEEEeccChhHhhhcCCCcceeeeeccc------------chhhhcccccCCCCeEEEEeCCC
Confidence 358999999999999999999 99999972 2222222 47899999999986
No 49
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.19 E-value=7e-11 Score=96.45 Aligned_cols=38 Identities=37% Similarity=0.649 Sum_probs=34.3
Q ss_pred CHHHHHHHHhCCCeEEEeCChHHHhcCCCCCeEEcCcc
Q 032117 76 PVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYM 113 (147)
Q Consensus 76 s~~el~~~~~~~~~lIDVR~~~e~~~ghIpGAinip~~ 113 (147)
+..++.+++.++.+|||||++.||..||||||+|+|+.
T Consensus 4 ~~~~~~~~~~~~~~lIDVRsp~Ef~~ghIpgAiniPl~ 41 (345)
T PRK11784 4 DAQDFRALFLNDTPLIDVRSPIEFAEGHIPGAINLPLL 41 (345)
T ss_pred cHHHHHHHHhCCCEEEECCCHHHHhcCCCCCeeeCCCC
Confidence 46778887777899999999999999999999999995
No 50
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.12 E-value=2e-10 Score=92.79 Aligned_cols=75 Identities=17% Similarity=0.162 Sum_probs=56.6
Q ss_pred cccCHHHHHHHHhC-CCeEEEeC--------C-hHHHhcCCCCCeEEcCcccccCC-----CCCCCHHHHHHHhhc--cC
Q 032117 73 TSVPVRVAHELLQA-GHRYLDVR--------T-PEEFSAGHATGAINVPYMYRVGS-----GMTKNLKFVEEVSTR--FR 135 (147)
Q Consensus 73 ~~Is~~el~~~~~~-~~~lIDVR--------~-~~e~~~ghIpGAinip~~~~~~~-----~~~~~~~~l~~~~~~--l~ 135 (147)
..|++++|++++++ +.+|||+| + ..+|..||||||+|+++...... .+.+.++.+.+.... ++
T Consensus 22 ~lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~~~~~~~~~lp~~~~~~~~l~~~Gi~ 101 (320)
T PLN02723 22 PVVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISDRTTDLPHMLPSEEAFAAAVSALGIE 101 (320)
T ss_pred ceecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcCCCCCcCCCCCCHHHHHHHHHHcCCC
Confidence 47999999999975 48899996 3 37899999999999998642221 334455666666655 56
Q ss_pred CCCeEEEEcCCC
Q 032117 136 KHDEIIVVSPCI 147 (147)
Q Consensus 136 ~d~~IVvyC~s~ 147 (147)
++++|||||+++
T Consensus 102 ~~~~VVvY~~~g 113 (320)
T PLN02723 102 NKDGVVVYDGKG 113 (320)
T ss_pred CCCEEEEEcCCC
Confidence 889999999864
No 51
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.07 E-value=2.1e-10 Score=93.96 Aligned_cols=65 Identities=29% Similarity=0.376 Sum_probs=50.0
Q ss_pred CCcccCHHHHHHHHhCCCeEEEeCChHHHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHh-hccCCCCeEEEEcCCC
Q 032117 71 VPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVS-TRFRKHDEIIVVSPCI 147 (147)
Q Consensus 71 ~~~~Is~~el~~~~~~~~~lIDVR~~~e~~~ghIpGAinip~~~~~~~~~~~~~~~l~~~~-~~l~~d~~IVvyC~s~ 147 (147)
....++++++.+. .++.+|||||+++||+.+|||||+|+|+. ++..... ..++++++||+||++|
T Consensus 259 ~~~~i~~~~~~~~-~~~~~IIDVR~~~ef~~ghIpgAinip~~-----------~l~~~~~~~~~~~~~~IvvyC~~G 324 (355)
T PRK05597 259 FGEVLDVPRVSAL-PDGVTLIDVREPSEFAAYSIPGAHNVPLS-----------AIREGANPPSVSAGDEVVVYCAAG 324 (355)
T ss_pred cccccCHHHHHhc-cCCCEEEECCCHHHHccCcCCCCEEeCHH-----------HhhhccccccCCCCCeEEEEcCCC
Confidence 3457888888854 45689999999999999999999999996 2222111 2257889999999975
No 52
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.01 E-value=6.5e-10 Score=89.64 Aligned_cols=27 Identities=48% Similarity=0.879 Sum_probs=25.1
Q ss_pred CCeEEEeCChHHHhcCCCCCeEEcCcc
Q 032117 87 GHRYLDVRTPEEFSAGHATGAINVPYM 113 (147)
Q Consensus 87 ~~~lIDVR~~~e~~~ghIpGAinip~~ 113 (147)
+..|||||++.||..||||||+|+|+.
T Consensus 2 ~~~liDVRsp~Ef~~ghipgAiniPl~ 28 (311)
T TIGR03167 2 FDPLIDVRSPAEFAEGHLPGAINLPLL 28 (311)
T ss_pred CCEEEECCCHHHHhcCCCcCCEecccc
Confidence 357999999999999999999999995
No 53
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=99.01 E-value=6.3e-10 Score=94.49 Aligned_cols=56 Identities=11% Similarity=0.140 Sum_probs=45.3
Q ss_pred HHHHHhCCCeEEEeCChHHHhcCCCCC----eEEcCcccccCCCCCCCHHHHHHHhhccCCCCeEEEEcCCC
Q 032117 80 AHELLQAGHRYLDVRTPEEFSAGHATG----AINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVVSPCI 147 (147)
Q Consensus 80 l~~~~~~~~~lIDVR~~~e~~~ghIpG----Ainip~~~~~~~~~~~~~~~l~~~~~~l~~d~~IVvyC~s~ 147 (147)
..+.+..+.++||||+++||+.+|||| |+|+|+. .+......++++++||+||++|
T Consensus 400 ~~~~~~~~~~lIDVR~~~E~~~~hI~g~~~~a~niP~~------------~l~~~~~~l~~~~~iivyC~~G 459 (482)
T PRK01269 400 TVSELPPDDVIIDIRSPDEQEDKPLKLEGVEVKSLPFY------------KLSTQFGDLDQSKTYLLYCDRG 459 (482)
T ss_pred HHHhcCCCCEEEECCCHHHHhcCCCCCCCceEEECCHH------------HHHHHHhhcCCCCeEEEECCCC
Confidence 444445578999999999999999999 9999996 3333345578999999999986
No 54
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=98.84 E-value=8.3e-09 Score=83.59 Aligned_cols=95 Identities=20% Similarity=0.281 Sum_probs=67.3
Q ss_pred ccccccCcccccccccccccc-chhhcCCCcccCHHHHHHHHhCC--CeEEEeCChHHHhcCCCCCeEEcCcccccCCCC
Q 032117 44 DNIGFISSKILSFCPKASLRG-NLEAVGVPTSVPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGM 120 (147)
Q Consensus 44 ~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Is~~el~~~~~~~--~~lIDVR~~~e~~~ghIpGAinip~~~~~~~~~ 120 (147)
.++..+ +|..||+...... .+........|+..++++.++++ .++||||++.||+..|+|+|+|||+.+....
T Consensus 289 tit~~~--dYe~fCg~~~~~~~~l~lL~~~~Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~~lP~avNIPL~~l~~~-- 364 (427)
T KOG2017|consen 289 TITSLI--DYELFCGSSATDKCPLKLLEPDERVSVTDYKRILDSGAKHLLLDVRPSHEYEICRLPEAVNIPLKELRSR-- 364 (427)
T ss_pred ccCccc--chhcccCCccccccchhcCChhhcccHHHHHHHHhcCCCeEEEeccCcceEEEEecccccccchhhhhhh--
Confidence 455444 7999999665443 33333445679999999999875 7999999999999999999999999621110
Q ss_pred CCCHHHHHHHhhccC-CCCeEEEEcCCC
Q 032117 121 TKNLKFVEEVSTRFR-KHDEIIVVSPCI 147 (147)
Q Consensus 121 ~~~~~~l~~~~~~l~-~d~~IVvyC~s~ 147 (147)
.-++....++ ...+|+|+|+.|
T Consensus 365 -----~~~~~~~~~~~~~~~I~ViCrrG 387 (427)
T KOG2017|consen 365 -----SGKKLQGDLNTESKDIFVICRRG 387 (427)
T ss_pred -----hhhhhcccccccCCCEEEEeCCC
Confidence 0022222333 567899999976
No 55
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=98.59 E-value=6.7e-08 Score=77.74 Aligned_cols=44 Identities=27% Similarity=0.360 Sum_probs=38.8
Q ss_pred CCCcccCHHHHHHHHhCC-------CeEEEeCChHHHhcCCCCCeEEcCcc
Q 032117 70 GVPTSVPVRVAHELLQAG-------HRYLDVRTPEEFSAGHATGAINVPYM 113 (147)
Q Consensus 70 ~~~~~Is~~el~~~~~~~-------~~lIDVR~~~e~~~ghIpGAinip~~ 113 (147)
..+..||+++++.++++. ++|||+|-|.||..|||+||+||+..
T Consensus 153 ~~~k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkgavnl~~~ 203 (325)
T KOG3772|consen 153 QDLKYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGAVNLYSK 203 (325)
T ss_pred ccccccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccceecccH
Confidence 346789999999999752 36999999999999999999999986
No 56
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=98.49 E-value=4.9e-07 Score=72.13 Aligned_cols=75 Identities=19% Similarity=0.206 Sum_probs=57.6
Q ss_pred CcccCHHHHHHHHhC------CCeEEEeCCh--HHHhcCCCCCeEEcCcccccC-----CCCCCCHHHHHHHhhc--cCC
Q 032117 72 PTSVPVRVAHELLQA------GHRYLDVRTP--EEFSAGHATGAINVPYMYRVG-----SGMTKNLKFVEEVSTR--FRK 136 (147)
Q Consensus 72 ~~~Is~~el~~~~~~------~~~lIDVR~~--~e~~~ghIpGAinip~~~~~~-----~~~~~~~~~l~~~~~~--l~~ 136 (147)
...|+++++.+.+++ +..+++++.. .+|..+|||||+++++..... .++.++++.+.+++.. ++.
T Consensus 10 ~~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv~~d~~~~~~~~~~~~~~lp~~e~fa~~~~~~GI~~ 89 (285)
T COG2897 10 EFLVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGAVFFDWEADLSDPVPLPHMLPSPEQFAKLLGELGIRN 89 (285)
T ss_pred ceEEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCCEecCHHHhhcCCCCCCCCCCCHHHHHHHHHHcCCCC
Confidence 457999999998864 3456666554 889999999999999975443 2567787777777665 678
Q ss_pred CCeEEEEcCC
Q 032117 137 HDEIIVVSPC 146 (147)
Q Consensus 137 d~~IVvyC~s 146 (147)
|+.||+|-..
T Consensus 90 d~tVVvYdd~ 99 (285)
T COG2897 90 DDTVVVYDDG 99 (285)
T ss_pred CCEEEEECCC
Confidence 9999999754
No 57
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=98.36 E-value=3.4e-07 Score=72.90 Aligned_cols=67 Identities=21% Similarity=0.203 Sum_probs=51.5
Q ss_pred cccCHHHHHHHHhC-CCeEEEeCChHHHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHhhc--cCCCCeEEEEcCCC
Q 032117 73 TSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVVSPCI 147 (147)
Q Consensus 73 ~~Is~~el~~~~~~-~~~lIDVR~~~e~~~ghIpGAinip~~~~~~~~~~~~~~~l~~~~~~--l~~d~~IVvyC~s~ 147 (147)
.-|++++..+++.+ +.++||+|+.-||+.||..||++.+... -.+|..++.+. .-++++|+.||-+|
T Consensus 113 ~yl~p~~wn~~l~D~~~vviDtRN~YE~~iG~F~gAv~p~~~t--------FrefP~~v~~~~~~~~~KkVvmyCTGG 182 (308)
T COG1054 113 TYLSPKDWNELLSDPDVVVIDTRNDYEVAIGHFEGAVEPDIET--------FREFPAWVEENLDLLKDKKVVMYCTGG 182 (308)
T ss_pred CccCHHHHHHHhcCCCeEEEEcCcceeEeeeeecCccCCChhh--------hhhhHHHHHHHHHhccCCcEEEEcCCc
Confidence 46899999999975 5899999999999999999999999851 11333333322 23667999999876
No 58
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=98.18 E-value=2.1e-06 Score=67.95 Aligned_cols=61 Identities=26% Similarity=0.455 Sum_probs=47.2
Q ss_pred CCeEEEeCChHHHh-----------cCCCCCeEEcCcccccCC-CCCCCHHHHHHHhhc--cCCCCeEEEEcCCC
Q 032117 87 GHRYLDVRTPEEFS-----------AGHATGAINVPYMYRVGS-GMTKNLKFVEEVSTR--FRKHDEIIVVSPCI 147 (147)
Q Consensus 87 ~~~lIDVR~~~e~~-----------~ghIpGAinip~~~~~~~-~~~~~~~~l~~~~~~--l~~d~~IVvyC~s~ 147 (147)
++.+||.|...+|. .||||||+|+|+...+.. +..+.++.+...... +..++|+|+-|++|
T Consensus 172 ~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa~n~P~~~~~~~~g~~k~~edl~~~f~~~~l~~~~p~~~sC~~G 246 (286)
T KOG1529|consen 172 NFQYLDARSKGRFDGTEPEPRSGATGGHIPGAINFPFDEVLDPDGFIKPAEDLKHLFAQKGLKLSKPVIVSCGTG 246 (286)
T ss_pred cceeeeccccccccccCCCCcccCcCccCCCcccCChHHhcccccccCCHHHHHHHHHhcCcccCCCEEEeeccc
Confidence 37899999988883 599999999999876653 444446666665543 56789999999986
No 59
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=97.02 E-value=0.0029 Score=43.74 Aligned_cols=69 Identities=12% Similarity=0.030 Sum_probs=36.0
Q ss_pred cccCHHHHHHHHhCC-CeEEEeCChHHHh-------------cCCCCCeEEcCcccccCCCCCCCHHHHHHHhhccC-CC
Q 032117 73 TSVPVRVAHELLQAG-HRYLDVRTPEEFS-------------AGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR-KH 137 (147)
Q Consensus 73 ~~Is~~el~~~~~~~-~~lIDVR~~~e~~-------------~ghIpGAinip~~~~~~~~~~~~~~~l~~~~~~l~-~d 137 (147)
..++++++.++.+.| ..||+.|+..|=. .-.+ .-+|+|+.. -..+.+.+..+...+. .+
T Consensus 13 ~Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl-~y~~iPv~~-----~~~~~~~v~~f~~~l~~~~ 86 (110)
T PF04273_consen 13 GQPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGL-QYVHIPVDG-----GAITEEDVEAFADALESLP 86 (110)
T ss_dssp CS--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT--EEEE----T-----TT--HHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCC-eEEEeecCC-----CCCCHHHHHHHHHHHHhCC
Confidence 358999999999999 5799999764411 0111 246788752 1233445555544443 46
Q ss_pred CeEEEEcCCC
Q 032117 138 DEIIVVSPCI 147 (147)
Q Consensus 138 ~~IVvyC~s~ 147 (147)
+||++||+||
T Consensus 87 ~Pvl~hC~sG 96 (110)
T PF04273_consen 87 KPVLAHCRSG 96 (110)
T ss_dssp TSEEEE-SCS
T ss_pred CCEEEECCCC
Confidence 7999999997
No 60
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=96.87 E-value=0.0045 Score=44.01 Aligned_cols=70 Identities=14% Similarity=0.092 Sum_probs=43.2
Q ss_pred cccCHHHHHHHHhCC-CeEEEeCChHHHhcCC----------CCC--eEEcCcccccCCCCCCCHHHHHHHhhccC-CCC
Q 032117 73 TSVPVRVAHELLQAG-HRYLDVRTPEEFSAGH----------ATG--AINVPYMYRVGSGMTKNLKFVEEVSTRFR-KHD 138 (147)
Q Consensus 73 ~~Is~~el~~~~~~~-~~lIDVR~~~e~~~gh----------IpG--Ainip~~~~~~~~~~~~~~~l~~~~~~l~-~d~ 138 (147)
..++.+++..+.+.| ..|||.|+..|-.... -+| -+++|+.. .. .+++.+..+...+. .++
T Consensus 13 ~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~---~~--~~~~~v~~f~~~~~~~~~ 87 (135)
T TIGR01244 13 PQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTA---GD--ITPDDVETFRAAIGAAEG 87 (135)
T ss_pred CCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCC---CC--CCHHHHHHHHHHHHhCCC
Confidence 457889998877778 5799999876632110 023 35677642 11 23344444433333 468
Q ss_pred eEEEEcCCC
Q 032117 139 EIIVVSPCI 147 (147)
Q Consensus 139 ~IVvyC~s~ 147 (147)
||++||++|
T Consensus 88 pvL~HC~sG 96 (135)
T TIGR01244 88 PVLAYCRSG 96 (135)
T ss_pred CEEEEcCCC
Confidence 999999987
No 61
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=96.79 E-value=0.0021 Score=52.16 Aligned_cols=64 Identities=17% Similarity=0.249 Sum_probs=47.8
Q ss_pred CCcccCHHHHHHHHhCC-------CeEEEeCChHHHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHhh-c-cCCCCeEE
Q 032117 71 VPTSVPVRVAHELLQAG-------HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST-R-FRKHDEII 141 (147)
Q Consensus 71 ~~~~Is~~el~~~~~~~-------~~lIDVR~~~e~~~ghIpGAinip~~~~~~~~~~~~~~~l~~~~~-~-l~~d~~IV 141 (147)
-.+.|+++.++..+++. ..|||.|=+.||..|||-.|+||--. +.+...+. . +..-.-+|
T Consensus 240 s~~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIinaVNi~s~-----------~~l~~~F~hkplThp~aLi 308 (427)
T COG5105 240 SIQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIINAVNISST-----------KKLGLLFRHKPLTHPRALI 308 (427)
T ss_pred chhhcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceeeeeeecchH-----------HHHHHHHHhccccCceeEE
Confidence 36789999999999753 36999999999999999999999875 23332222 1 33345688
Q ss_pred EEcC
Q 032117 142 VVSP 145 (147)
Q Consensus 142 vyC~ 145 (147)
++|.
T Consensus 309 fHCE 312 (427)
T COG5105 309 FHCE 312 (427)
T ss_pred EEee
Confidence 8885
No 62
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=96.60 E-value=0.0091 Score=47.62 Aligned_cols=72 Identities=24% Similarity=0.251 Sum_probs=51.9
Q ss_pred ccCHHHHHHHHhC-CCeEEEeC---------ChHHHhcCCCCCeEEcCcccccC-----CCCCCCHHHHHHHhhc--cCC
Q 032117 74 SVPVRVAHELLQA-GHRYLDVR---------TPEEFSAGHATGAINVPYMYRVG-----SGMTKNLKFVEEVSTR--FRK 136 (147)
Q Consensus 74 ~Is~~el~~~~~~-~~~lIDVR---------~~~e~~~ghIpGAinip~~~~~~-----~~~~~~~~~l~~~~~~--l~~ 136 (147)
.|+++.+.+.+.+ +.+|||.- ...||..-|||||.++.++.... .++...++.+++.... +++
T Consensus 6 iv~~~~v~~~~~~~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~~fdld~~~~~s~~~~~~lp~~e~Fa~y~~~lGi~n 85 (286)
T KOG1529|consen 6 IVSVKWVMENLGNHGLRILDASWYFPPLRRIAEFEFLERHIPGASHFDLDIISYPSSPYRHMLPTAEHFAEYASRLGVDN 85 (286)
T ss_pred ccChHHHHHhCcCCCeEEEeeeeecCchhhhhhhhhhhccCCCceeeeccccccCCCcccccCccHHHHHHHHHhcCCCC
Confidence 5788988888876 58999984 34578889999999999864322 2455554544444433 678
Q ss_pred CCeEEEEcC
Q 032117 137 HDEIIVVSP 145 (147)
Q Consensus 137 d~~IVvyC~ 145 (147)
++.+|||-+
T Consensus 86 ~d~vViYd~ 94 (286)
T KOG1529|consen 86 GDHVVIYDR 94 (286)
T ss_pred CCeEEEEcC
Confidence 899999977
No 63
>COG2603 Predicted ATPase [General function prediction only]
Probab=95.62 E-value=0.0091 Score=47.92 Aligned_cols=38 Identities=39% Similarity=0.506 Sum_probs=31.8
Q ss_pred HHHHHHHHhCCCeEEEeCChHHHhcCCCCCeEEcCccc
Q 032117 77 VRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMY 114 (147)
Q Consensus 77 ~~el~~~~~~~~~lIDVR~~~e~~~ghIpGAinip~~~ 114 (147)
.+....++-++..+||||.|-||..|+.|+++|+|...
T Consensus 5 ~q~~~~~~~~~~~lid~rap~ef~~g~~~ia~nl~~~n 42 (334)
T COG2603 5 EQDYRALLLADTPLIDVRAPIEFENGAMPIAINLPLMN 42 (334)
T ss_pred HHHHHHHHhcCCceeeccchHHHhcccchhhhcccccc
Confidence 34555566677899999999999999999999999853
No 64
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=95.62 E-value=0.0035 Score=50.81 Aligned_cols=39 Identities=8% Similarity=-0.054 Sum_probs=34.6
Q ss_pred cCHHHHHHHHhCCCeEEEeCChHHHhcCCCCCeEEcCcc
Q 032117 75 VPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYM 113 (147)
Q Consensus 75 Is~~el~~~~~~~~~lIDVR~~~e~~~ghIpGAinip~~ 113 (147)
-+++++++.+.++..++|+|....|..+||+|++|+|..
T Consensus 16 ~~~~~~~~~l~~~~~~~d~rg~i~~a~egIngtis~~~~ 54 (314)
T PRK00142 16 EDPEAFRDEHLALCKSLGLKGRILVAEEGINGTVSGTIE 54 (314)
T ss_pred CCHHHHHHHHHHHHHHcCCeeEEEEcCCCceEEEEecHH
Confidence 367888888877778999999999999999999999984
No 65
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=94.54 E-value=0.24 Score=35.95 Aligned_cols=44 Identities=20% Similarity=0.384 Sum_probs=23.2
Q ss_pred CCCcccCHHHHHHHHhCC-CeEEEeCChHHHhc---CCCCCe--EEcCcc
Q 032117 70 GVPTSVPVRVAHELLQAG-HRYLDVRTPEEFSA---GHATGA--INVPYM 113 (147)
Q Consensus 70 ~~~~~Is~~el~~~~~~~-~~lIDVR~~~e~~~---ghIpGA--inip~~ 113 (147)
+....+|.++.+.+.+-| ..|||.|++.|... -.++|. +|+|+.
T Consensus 25 ~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~~~~g~~~~~~p~~ 74 (164)
T PF13350_consen 25 GNLSNLTEADLERLRELGIRTIIDLRSPTERERAPDPLIDGVQYVHIPIF 74 (164)
T ss_dssp S--TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS----TT-EEEE--SS
T ss_pred CCcCcCCHHHHHHHHhCCCCEEEECCCccccccCCCCCcCCceeeeeccc
Confidence 345678999988888667 57999999999764 233454 566664
No 66
>PLN02727 NAD kinase
Probab=93.54 E-value=0.25 Score=45.46 Aligned_cols=71 Identities=15% Similarity=0.103 Sum_probs=48.6
Q ss_pred CcccCHHHHHHHHhCCC-eEEEeCChHHHhcCCC------------CCeEEcCcccccCCCCCCCHHHHHHHhhcc-C-C
Q 032117 72 PTSVPVRVAHELLQAGH-RYLDVRTPEEFSAGHA------------TGAINVPYMYRVGSGMTKNLKFVEEVSTRF-R-K 136 (147)
Q Consensus 72 ~~~Is~~el~~~~~~~~-~lIDVR~~~e~~~ghI------------pGAinip~~~~~~~~~~~~~~~l~~~~~~l-~-~ 136 (147)
...+++++++.+.+.|+ .||+.|+..|- .+.- =.-+|+|+.. ...+.++.+.++.+.+ + .
T Consensus 266 sgQpspe~la~LA~~GfKTIINLRpd~E~-~q~~~~ee~eAae~~GL~yVhIPVs~----~~apt~EqVe~fa~~l~~sl 340 (986)
T PLN02727 266 GGQVTEEGLKWLLEKGFKTIVDLRAEIVK-DNFYQAAVDDAISSGKIEVVKIPVEV----RTAPSAEQVEKFASLVSDSS 340 (986)
T ss_pred eCCCCHHHHHHHHHCCCeEEEECCCCCcC-CCchhHHHHHHHHHcCCeEEEeecCC----CCCCCHHHHHHHHHHHHhhc
Confidence 45789999999888894 79999987661 1111 1246777631 1234556777766666 3 5
Q ss_pred CCeEEEEcCCC
Q 032117 137 HDEIIVVSPCI 147 (147)
Q Consensus 137 d~~IVvyC~s~ 147 (147)
.+||++||++|
T Consensus 341 pkPVLvHCKSG 351 (986)
T PLN02727 341 KKPIYLHSKEG 351 (986)
T ss_pred CCCEEEECCCC
Confidence 78999999997
No 67
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.29 E-value=0.46 Score=33.48 Aligned_cols=70 Identities=13% Similarity=0.068 Sum_probs=45.7
Q ss_pred CcccCHHHHHHHHhCC-CeEEEeCChHHH-------------hcCCCCCeEEcCcccccCCCCCCCHHHHHHHhhccC-C
Q 032117 72 PTSVPVRVAHELLQAG-HRYLDVRTPEEF-------------SAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR-K 136 (147)
Q Consensus 72 ~~~Is~~el~~~~~~~-~~lIDVR~~~e~-------------~~ghIpGAinip~~~~~~~~~~~~~~~l~~~~~~l~-~ 136 (147)
...++++++.++...| ..||--|+..|= +..-+. -.+||.. +....++.++.....++ .
T Consensus 13 sgQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~-y~~iPV~-----~~~iT~~dV~~f~~Al~ea 86 (130)
T COG3453 13 SGQISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLT-YTHIPVT-----GGGITEADVEAFQRALDEA 86 (130)
T ss_pred cCCCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCc-eEEeecC-----CCCCCHHHHHHHHHHHHHh
Confidence 4568999999998888 569999964331 112222 4567764 22344556665555554 6
Q ss_pred CCeEEEEcCCC
Q 032117 137 HDEIIVVSPCI 147 (147)
Q Consensus 137 d~~IVvyC~s~ 147 (147)
+.||+.||+||
T Consensus 87 egPVlayCrsG 97 (130)
T COG3453 87 EGPVLAYCRSG 97 (130)
T ss_pred CCCEEeeecCC
Confidence 78999999997
No 68
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=91.44 E-value=0.33 Score=33.59 Aligned_cols=68 Identities=15% Similarity=0.088 Sum_probs=34.9
Q ss_pred HHHHHhCC-CeEEEeCChHHHhcCCCCC--eEEcCcccccCCCCCCC-HHHHHHHhhccCCCCeEEEEcCCC
Q 032117 80 AHELLQAG-HRYLDVRTPEEFSAGHATG--AINVPYMYRVGSGMTKN-LKFVEEVSTRFRKHDEIIVVSPCI 147 (147)
Q Consensus 80 l~~~~~~~-~~lIDVR~~~e~~~ghIpG--Ainip~~~~~~~~~~~~-~~~l~~~~~~l~~d~~IVvyC~s~ 147 (147)
...+.+.| ..|||+++..++..-+.+| -.++|+.+......... ....+.+......+++|+|+|..|
T Consensus 20 ~~~L~~~gi~~VI~l~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G 91 (139)
T cd00127 20 KELLKKLGITHVLNVAKEVPNENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDAREKGGKVLVHCLAG 91 (139)
T ss_pred HHHHHHcCCCEEEEcccCCCCcccCCCCceEEEEEceeCCCCChHHHHHHHHHHHHHHHhcCCcEEEECCCC
Confidence 33344456 5899999877752222222 45677653321111100 011122222234568999999876
No 69
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=90.85 E-value=0.76 Score=37.29 Aligned_cols=63 Identities=19% Similarity=0.212 Sum_probs=43.0
Q ss_pred CcccCHHHHHHHHhC-CCeEEEeCChHHHhc---CCCC-CeEEcCcccccCCCCCCCHHHHHHH---hhccCCCCeEEEE
Q 032117 72 PTSVPVRVAHELLQA-GHRYLDVRTPEEFSA---GHAT-GAINVPYMYRVGSGMTKNLKFVEEV---STRFRKHDEIIVV 143 (147)
Q Consensus 72 ~~~Is~~el~~~~~~-~~~lIDVR~~~e~~~---ghIp-GAinip~~~~~~~~~~~~~~~l~~~---~~~l~~d~~IVvy 143 (147)
...+...++.+.+.+ +..|||+|+..+|.. |||+ |.. |- ...|...+ ...++.+++|++-
T Consensus 135 ~tg~gKt~Ll~~L~~~~~~VvDlr~~a~hrGs~fG~~~~~~q--ps----------q~~fe~~L~~~l~~~~~~~~i~~e 202 (311)
T TIGR03167 135 MTGSGKTELLHALANAGAQVLDLEGLANHRGSSFGALGLGPQ--PS----------QKRFENALAEALRRLDPGRPIFVE 202 (311)
T ss_pred CCCcCHHHHHHHHhcCCCeEEECCchHHhcCcccCCCCCCCC--Cc----------hHHHHHHHHHHHHhCCCCceEEEE
Confidence 457888888888875 589999999999987 8888 421 11 11232222 2235777899988
Q ss_pred cCC
Q 032117 144 SPC 146 (147)
Q Consensus 144 C~s 146 (147)
|.|
T Consensus 203 ~es 205 (311)
T TIGR03167 203 DES 205 (311)
T ss_pred eCc
Confidence 865
No 70
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=90.27 E-value=0.5 Score=32.89 Aligned_cols=64 Identities=16% Similarity=0.103 Sum_probs=33.7
Q ss_pred HHHHHhCC-CeEEEeCChHHHhc-CCCCCeEEcCcccccCCCCCCCHHHHHHHh----hccCCCCeEEEEcCCC
Q 032117 80 AHELLQAG-HRYLDVRTPEEFSA-GHATGAINVPYMYRVGSGMTKNLKFVEEVS----TRFRKHDEIIVVSPCI 147 (147)
Q Consensus 80 l~~~~~~~-~~lIDVR~~~e~~~-ghIpGAinip~~~~~~~~~~~~~~~l~~~~----~~l~~d~~IVvyC~s~ 147 (147)
+..+.+.| ..||++++..+... ..+ --+++|+.+.. .....+++.... .....+++|+|+|..|
T Consensus 19 ~~~l~~~gi~~Vi~l~~~~~~~~~~~~-~~~~ipi~D~~---~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G 88 (138)
T smart00195 19 LALLKKLGITHVINVTNEVPNLNKKGF-TYLGVPILDNT---ETKISPYFPEAVEFIEDAEKKGGKVLVHCQAG 88 (138)
T ss_pred HHHHHHcCCCEEEEccCCCCCCCCCCC-EEEEEECCCCC---CCChHHHHHHHHHHHHHHhcCCCeEEEECCCC
Confidence 34444567 57999987654321 111 24567765311 111112222222 2245678999999976
No 71
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=87.46 E-value=0.9 Score=34.28 Aligned_cols=36 Identities=33% Similarity=0.528 Sum_probs=28.9
Q ss_pred CcccCHHHHHHHHhCCCeEEEeCChHHHhcCCCCCeEEcCc
Q 032117 72 PTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPY 112 (147)
Q Consensus 72 ~~~Is~~el~~~~~~~~~lIDVR~~~e~~~ghIpGAinip~ 112 (147)
+..|+.+|..+.+..|.-||||.+|.|=.- || |+||
T Consensus 5 vSPin~eEA~eAieGGAdIiDVKNP~EGSL----GA-NFPW 40 (235)
T COG1891 5 VSPINREEAIEAIEGGADIIDVKNPAEGSL----GA-NFPW 40 (235)
T ss_pred eccCCHHHHHHHhhCCCceEeccCcccCcc----cC-CChH
Confidence 345888999999988899999999988433 33 8998
No 72
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=85.43 E-value=0.19 Score=43.92 Aligned_cols=40 Identities=25% Similarity=0.300 Sum_probs=33.4
Q ss_pred CcccCHHHHHHHHhCCCeEEEeCChHHHhcCCCCCeEEcCcc
Q 032117 72 PTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYM 113 (147)
Q Consensus 72 ~~~Is~~el~~~~~~~~~lIDVR~~~e~~~ghIpGAinip~~ 113 (147)
.+.|+++++..+ ....++|.|...||..+|+++++|+|+.
T Consensus 621 ~prmsAedl~~~--~~l~v~d~r~~~ef~r~~~s~s~nip~~ 660 (725)
T KOG1093|consen 621 CPRISAEDLIWL--KMLYVLDTRQESEFQREHFSDSINIPFN 660 (725)
T ss_pred CccccHHHHHHH--HHHHHHhHHHHHHHHHhhccccccCCcc
Confidence 456777766665 3378999999999999999999999996
No 73
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=79.21 E-value=3.9 Score=30.38 Aligned_cols=69 Identities=13% Similarity=0.135 Sum_probs=27.2
Q ss_pred HHHHHHhCC-CeEEEeCChHHHhcCCCCC-----------eEEcCcccccCCCCCCCHHHHHHHhhccCCCCeEEEEcCC
Q 032117 79 VAHELLQAG-HRYLDVRTPEEFSAGHATG-----------AINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVVSPC 146 (147)
Q Consensus 79 el~~~~~~~-~~lIDVR~~~e~~~ghIpG-----------Ainip~~~~~~~~~~~~~~~l~~~~~~l~~d~~IVvyC~s 146 (147)
++.++.+.| ..||=.-+..|...-.+|+ ..++|+.+...+....--+.+.++...+..+++|+++|++
T Consensus 63 DL~~Lk~~G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~aPd~~~~~~i~~eL~~~L~~g~~V~vHC~G 142 (168)
T PF05706_consen 63 DLERLKDWGAQDVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGSAPDFAAAWQILEELAARLENGRKVLVHCRG 142 (168)
T ss_dssp HHHHHHHTT--EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS---HHHHHHHHHHHHHHHHTT--EEEE-SS
T ss_pred HHHHHHHCCCCEEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCCCCCHHHHHHHHHHHHHHHHcCCEEEEECCC
Confidence 344444455 2344456666665444443 3467764322111100011233334446788999999998
Q ss_pred C
Q 032117 147 I 147 (147)
Q Consensus 147 ~ 147 (147)
|
T Consensus 143 G 143 (168)
T PF05706_consen 143 G 143 (168)
T ss_dssp S
T ss_pred C
Confidence 6
No 74
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=77.49 E-value=7.9 Score=28.35 Aligned_cols=65 Identities=12% Similarity=0.080 Sum_probs=34.2
Q ss_pred HHHHHHHhCC-CeEEEeCC----hHHHhcCCCCCeEEcCcccccCCCCCCCH----HHHHHHhhc----cCCCCeEEEEc
Q 032117 78 RVAHELLQAG-HRYLDVRT----PEEFSAGHATGAINVPYMYRVGSGMTKNL----KFVEEVSTR----FRKHDEIIVVS 144 (147)
Q Consensus 78 ~el~~~~~~~-~~lIDVR~----~~e~~~ghIpGAinip~~~~~~~~~~~~~----~~l~~~~~~----l~~d~~IVvyC 144 (147)
+.++.+.+.| ..||.+.+ ++.+...+|. -.++|+.+ +..+.. ++++.+... ..++.+|+|+|
T Consensus 31 ~~l~~L~~~gI~~Iv~l~~~~~~~~~~~~~gi~-~~~~p~~D----~~~P~~~~i~~~~~~i~~~~~~~~~~g~~V~VHC 105 (166)
T PTZ00242 31 LYIKELQRYNVTHLVRVCGPTYDAELLEKNGIE-VHDWPFDD----GAPPPKAVIDNWLRLLDQEFAKQSTPPETIAVHC 105 (166)
T ss_pred HHHHHHHhCCCeEEEecCCCCCCHHHHHHCCCE-EEecCCCC----CCCCCHHHHHHHHHHHHHHHHhhccCCCeEEEEC
Confidence 3445555567 46887743 3455555553 35566532 112222 222222221 24588999999
Q ss_pred CCC
Q 032117 145 PCI 147 (147)
Q Consensus 145 ~s~ 147 (147)
..|
T Consensus 106 ~aG 108 (166)
T PTZ00242 106 VAG 108 (166)
T ss_pred CCC
Confidence 976
No 75
>PRK12361 hypothetical protein; Provisional
Probab=74.25 E-value=5.3 Score=34.63 Aligned_cols=68 Identities=13% Similarity=0.072 Sum_probs=36.0
Q ss_pred CHHHHHHHHhCC-CeEEEeCChHHHh-cCCCC---CeEEcCcccccCCCCCCCHHHHHHHhhc----cCCCCeEEEEcCC
Q 032117 76 PVRVAHELLQAG-HRYLDVRTPEEFS-AGHAT---GAINVPYMYRVGSGMTKNLKFVEEVSTR----FRKHDEIIVVSPC 146 (147)
Q Consensus 76 s~~el~~~~~~~-~~lIDVR~~~e~~-~ghIp---GAinip~~~~~~~~~~~~~~~l~~~~~~----l~~d~~IVvyC~s 146 (147)
++.++..+.+.+ ..|||++.+.+.. ....+ .-.|+|..+.. .++.+.+.+..+. ...+.+|+|+|..
T Consensus 109 ~a~d~~~L~~~gI~~Vldlt~E~~~~~~~~~~~~i~yl~iPi~D~~----~p~~~~l~~a~~~i~~~~~~~~~VlVHC~~ 184 (547)
T PRK12361 109 FPADLEKLKSNKITAILDVTAEFDGLDWSLTEEDIDYLNIPILDHS----VPTLAQLNQAINWIHRQVRANKSVVVHCAL 184 (547)
T ss_pred CcccHHHHHHcCCCEEEEcccccccccccccccCceEEEeecCCCC----CCcHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 445555555566 5799999533211 01111 34677865322 1223333333222 3467899999987
Q ss_pred C
Q 032117 147 I 147 (147)
Q Consensus 147 ~ 147 (147)
|
T Consensus 185 G 185 (547)
T PRK12361 185 G 185 (547)
T ss_pred C
Confidence 6
No 76
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=72.22 E-value=2.7 Score=34.45 Aligned_cols=37 Identities=14% Similarity=-0.024 Sum_probs=29.3
Q ss_pred CCcccCHHHHHHHHh-------CCCeEEEeCChHHHhcCCCCCeE
Q 032117 71 VPTSVPVRVAHELLQ-------AGHRYLDVRTPEEFSAGHATGAI 108 (147)
Q Consensus 71 ~~~~Is~~el~~~~~-------~~~~lIDVR~~~e~~~ghIpGAi 108 (147)
....++++++.++++ .+..+||||++. |+..++|+-.
T Consensus 275 ~~~~i~~~~~~~~l~~~~~~~~~~~~ll~vr~~~-~~~~~~~~gr 318 (339)
T PRK07688 275 HKEEYDLEELAELLRDRGLDVNVNPYLLSFSLEE-KRLVLFKDGR 318 (339)
T ss_pred CcCccCHHHHHHHHHhcccccCCCcEEEEEecCC-eEEEEEcCCC
Confidence 346799999998883 246899999988 9999998543
No 77
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=72.17 E-value=6.3 Score=26.92 Aligned_cols=63 Identities=8% Similarity=0.071 Sum_probs=32.3
Q ss_pred hCC-CeEEEeCChHHH---hcCCCCCeEEcCcccccCCCCCCCHHHHHHHh-hccCCCCeEEEEcCCC
Q 032117 85 QAG-HRYLDVRTPEEF---SAGHATGAINVPYMYRVGSGMTKNLKFVEEVS-TRFRKHDEIIVVSPCI 147 (147)
Q Consensus 85 ~~~-~~lIDVR~~~e~---~~ghIpGAinip~~~~~~~~~~~~~~~l~~~~-~~l~~d~~IVvyC~s~ 147 (147)
+.+ ..||+++.+.+. ....----.++|..+.........-+...+.. ....++.+|+|+|..|
T Consensus 16 ~~~I~~Vin~~~~~~~~~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G 83 (133)
T PF00782_consen 16 NLGITHVINLQEECPNPYFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVHCKAG 83 (133)
T ss_dssp HTTEEEEEECSSSSSTSHHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred HCCCCEEEEccCCCcCchhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEEeCCC
Confidence 456 479999975443 22222244677765311111111111122222 2245778999999876
No 78
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=61.10 E-value=15 Score=26.95 Aligned_cols=60 Identities=10% Similarity=0.155 Sum_probs=23.8
Q ss_pred CeEEEeCChH---H---HhcCCCCCeEEcCcccccCCCCCCCHHHHHHHhhc-cC-CCCeEEEEcCCC
Q 032117 88 HRYLDVRTPE---E---FSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR-FR-KHDEIIVVSPCI 147 (147)
Q Consensus 88 ~~lIDVR~~~---e---~~~ghIpGAinip~~~~~~~~~~~~~~~l~~~~~~-l~-~d~~IVvyC~s~ 147 (147)
..||..|++. + |...+--.-++++........+....+.+.+.... ++ .+.||+|+|.+|
T Consensus 34 KTII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~ild~~n~PvLiHC~~G 101 (164)
T PF03162_consen 34 KTIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEALEIILDPRNYPVLIHCNHG 101 (164)
T ss_dssp SEEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHHHHHHHHHH-GGG-SEEEE-SSS
T ss_pred ceEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHHHHHhCCCCCCEEEEeCCC
Confidence 4688887541 2 32223234556666422222233445566655544 44 578999999876
No 79
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=59.96 E-value=4.4 Score=32.60 Aligned_cols=35 Identities=34% Similarity=0.410 Sum_probs=28.6
Q ss_pred ccCHHHHHHHHhCC-CeEEEeCChHHHhcCCCCCeEEcCc
Q 032117 74 SVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPY 112 (147)
Q Consensus 74 ~Is~~el~~~~~~~-~~lIDVR~~~e~~~ghIpGAinip~ 112 (147)
.++++++.+.+..+ ++++|.|+ +..||.+|+|+-+
T Consensus 5 ~~s~~wlnr~l~~~nllllDCRs----es~~i~~A~~val 40 (343)
T KOG1717|consen 5 SKSVAWLNRQLELGNLLLLDCRS----ESSHIESAINVAL 40 (343)
T ss_pred HHHHHHHHhhcccCceEEEecCC----ccchhhhhhhhcc
Confidence 46788888888764 88999999 6789999988765
No 80
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=58.89 E-value=41 Score=26.43 Aligned_cols=64 Identities=9% Similarity=0.090 Sum_probs=31.9
Q ss_pred HHHHHHhCC-CeEEEeCC----hHHHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHhhc----cCCCCeEEEEcCCC
Q 032117 79 VAHELLQAG-HRYLDVRT----PEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR----FRKHDEIIVVSPCI 147 (147)
Q Consensus 79 el~~~~~~~-~~lIDVR~----~~e~~~ghIpGAinip~~~~~~~~~~~~~~~l~~~~~~----l~~d~~IVvyC~s~ 147 (147)
.++++.+.+ ..||++.+ +++|....|. -.++|+. ++..+..+.+.+.... +..+..|+|+|..|
T Consensus 108 yl~eLk~~gV~~lVrlcE~~Yd~~~~~~~GI~-~~~lpip----Dg~aPs~~~i~~~l~~i~~~l~~g~~VaVHC~AG 180 (241)
T PTZ00393 108 YIKEMKNYNVTDLVRTCERTYNDGEITSAGIN-VHELIFP----DGDAPTVDIVSNWLTIVNNVIKNNRAVAVHCVAG 180 (241)
T ss_pred HHHHHHHcCCCEEEECCCCCCCHHHHHHcCCe-EEEeecC----CCCCCCHHHHHHHHHHHHHHHhcCCeEEEECCCC
Confidence 334444455 45777754 2344433331 2345543 2223333433333322 45678999999876
No 81
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=58.50 E-value=8.9 Score=28.31 Aligned_cols=14 Identities=14% Similarity=0.152 Sum_probs=11.5
Q ss_pred cCCCCeEEEEcCCC
Q 032117 134 FRKHDEIIVVSPCI 147 (147)
Q Consensus 134 l~~d~~IVvyC~s~ 147 (147)
+.+.++|+|+|..|
T Consensus 102 ~~~g~kVvVHC~~G 115 (180)
T COG2453 102 LSKGKKVVVHCQGG 115 (180)
T ss_pred HhcCCeEEEEcCCC
Confidence 45677999999976
No 82
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=57.38 E-value=5.4 Score=34.38 Aligned_cols=39 Identities=23% Similarity=0.373 Sum_probs=29.0
Q ss_pred ccCHHHHHHHHh--CC---CeEEEeCChHHHhcCCCCCeEEcCc
Q 032117 74 SVPVRVAHELLQ--AG---HRYLDVRTPEEFSAGHATGAINVPY 112 (147)
Q Consensus 74 ~Is~~el~~~~~--~~---~~lIDVR~~~e~~~ghIpGAinip~ 112 (147)
.|++-|+.+.-+ .+ ..|||.|+.++|+.||+-.|.|..-
T Consensus 308 pisv~el~~~~~~~~~~VrFFiVDcRpaeqynaGHlstaFhlDc 351 (669)
T KOG3636|consen 308 PISVIELTSHDEISSGSVRFFIVDCRPAEQYNAGHLSTAFHLDC 351 (669)
T ss_pred chhHHHhhcccccccCceEEEEEeccchhhcccccchhhhcccH
Confidence 456655554322 22 4699999999999999999998774
No 83
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=57.07 E-value=32 Score=28.32 Aligned_cols=61 Identities=16% Similarity=0.190 Sum_probs=36.1
Q ss_pred ccCHHHHHHHHhC-CCeEEEeCChHHHh---cCCCCCeEEcCcccccCCCCCCCHHHHHHHhhc---cCCCCeEEEEcCC
Q 032117 74 SVPVRVAHELLQA-GHRYLDVRTPEEFS---AGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR---FRKHDEIIVVSPC 146 (147)
Q Consensus 74 ~Is~~el~~~~~~-~~~lIDVR~~~e~~---~ghIpGAinip~~~~~~~~~~~~~~~l~~~~~~---l~~d~~IVvyC~s 146 (147)
.....++...+.+ +..+||+|++.+|. .|++++ +-|- ..+|...+... ++..++|+|=|-|
T Consensus 151 GsGKT~iL~~L~~~~~~vlDlE~~aehrGS~fG~~~~--~qps----------Q~~Fe~~l~~~l~~~~~~~~i~vE~Es 218 (345)
T PRK11784 151 GSGKTELLQALANAGAQVLDLEGLANHRGSSFGRLGG--PQPS----------QKDFENLLAEALLKLDPARPIVVEDES 218 (345)
T ss_pred cccHHHHHHHHHhcCCeEEECCchhhhccccccCCCC--CCcc----------hHHHHHHHHHHHHcCCCCCeEEEEecc
Confidence 3455566666654 68899999999996 344444 2232 12344433333 4556788877654
No 84
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=37.70 E-value=50 Score=23.55 Aligned_cols=27 Identities=4% Similarity=-0.052 Sum_probs=14.2
Q ss_pred CCCHHHHHHHh---hccCCCCeEEEEcCCC
Q 032117 121 TKNLKFVEEVS---TRFRKHDEIIVVSPCI 147 (147)
Q Consensus 121 ~~~~~~l~~~~---~~l~~d~~IVvyC~s~ 147 (147)
.+.++.+..+. ..++++..++|+|+.|
T Consensus 105 ~P~~~~iD~fi~~v~~~p~~~~l~fhC~~G 134 (149)
T PF14566_consen 105 APDPEDIDAFINFVKSLPKDTWLHFHCQAG 134 (149)
T ss_dssp ---HHHHHHHHHHHHTS-TT-EEEEE-SSS
T ss_pred CCCHHHHHHHHHHHHhCCCCCeEEEECCCC
Confidence 44454444443 3468899999999976
No 85
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=35.44 E-value=51 Score=20.80 Aligned_cols=12 Identities=8% Similarity=0.102 Sum_probs=9.9
Q ss_pred CCCeEEEEcCCC
Q 032117 136 KHDEIIVVSPCI 147 (147)
Q Consensus 136 ~d~~IVvyC~s~ 147 (147)
.+.+|+|+|..|
T Consensus 38 ~~~pvlVHC~~G 49 (105)
T smart00404 38 SSGPVVVHCSAG 49 (105)
T ss_pred CCCCEEEEeCCC
Confidence 367999999876
No 86
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=35.44 E-value=51 Score=20.80 Aligned_cols=12 Identities=8% Similarity=0.102 Sum_probs=9.9
Q ss_pred CCCeEEEEcCCC
Q 032117 136 KHDEIIVVSPCI 147 (147)
Q Consensus 136 ~d~~IVvyC~s~ 147 (147)
.+.+|+|+|..|
T Consensus 38 ~~~pvlVHC~~G 49 (105)
T smart00012 38 SSGPVVVHCSAG 49 (105)
T ss_pred CCCCEEEEeCCC
Confidence 367999999876
No 87
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=33.98 E-value=40 Score=20.98 Aligned_cols=27 Identities=19% Similarity=0.427 Sum_probs=21.9
Q ss_pred CcccCHHHHHHHHhCC--CeEEEeCChHH
Q 032117 72 PTSVPVRVAHELLQAG--HRYLDVRTPEE 98 (147)
Q Consensus 72 ~~~Is~~el~~~~~~~--~~lIDVR~~~e 98 (147)
-.-|+.+++.+++.+| +.++|+.+-++
T Consensus 17 s~YiTL~di~~lV~~g~~~~V~D~ktgeD 45 (64)
T PF07879_consen 17 SSYITLEDIAQLVREGEDFKVVDAKTGED 45 (64)
T ss_pred ceeEeHHHHHHHHHCCCeEEEEECCCCcc
Confidence 3569999999999876 78999987443
No 88
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=33.55 E-value=39 Score=23.05 Aligned_cols=20 Identities=30% Similarity=0.463 Sum_probs=14.0
Q ss_pred CHHHHHHHHhC-C-CeEEEeCC
Q 032117 76 PVRVAHELLQA-G-HRYLDVRT 95 (147)
Q Consensus 76 s~~el~~~~~~-~-~~lIDVR~ 95 (147)
+.+++.+.+.+ + .+|||||.
T Consensus 1 ~~e~f~~~l~~~~i~~lVDVR~ 22 (122)
T PF04343_consen 1 SIERFYDLLKKNGIRVLVDVRL 22 (122)
T ss_pred CHHHHHHHHHHCCCeEEEEECC
Confidence 35667776654 5 48999995
No 89
>PRK02227 hypothetical protein; Provisional
Probab=31.29 E-value=57 Score=25.62 Aligned_cols=26 Identities=31% Similarity=0.382 Sum_probs=22.5
Q ss_pred ccCHHHHHHHHhCCCeEEEeCChHHH
Q 032117 74 SVPVRVAHELLQAGHRYLDVRTPEEF 99 (147)
Q Consensus 74 ~Is~~el~~~~~~~~~lIDVR~~~e~ 99 (147)
..+.+|....+..|.-|||+-+|.|=
T Consensus 7 vr~~eEA~~Al~~GaDiIDvK~P~~G 32 (238)
T PRK02227 7 VRNLEEALEALAGGADIIDVKNPKEG 32 (238)
T ss_pred cCCHHHHHHHHhcCCCEEEccCCCCC
Confidence 46889999999999999999998873
No 90
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=30.35 E-value=1.1e+02 Score=26.25 Aligned_cols=72 Identities=6% Similarity=0.088 Sum_probs=43.0
Q ss_pred CHHHHHHHHhC----CCeEEEeCChHHHhcCCCCCeEE-cCcccccCCCCCCCHHHHHHHhhcc--CCCCeEEEEcCCC
Q 032117 76 PVRVAHELLQA----GHRYLDVRTPEEFSAGHATGAIN-VPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEIIVVSPCI 147 (147)
Q Consensus 76 s~~el~~~~~~----~~~lIDVR~~~e~~~ghIpGAin-ip~~~~~~~~~~~~~~~l~~~~~~l--~~d~~IVvyC~s~ 147 (147)
+.+++...++. .+.|.-.+.+..|+.++.-|.+- ++|.+-..+.+.....+-+.....+ ++..-+|++|++|
T Consensus 39 ~l~dV~~fL~s~H~~~y~vyNL~~er~yd~~~f~g~V~~~~~~Dh~~P~L~~l~~~c~~~~~WL~~d~~nVvvvHCk~G 117 (434)
T KOG2283|consen 39 NLEDVVLFLDSKHKDHYKVYNLSSERLYDPSRFHGRVARFGFDDHNPPPLELLCPFCKSMDNWLSEDPKNVVVVHCKAG 117 (434)
T ss_pred CHHHHHHHHhhccCCceEEEecCccccCCccccccceeecCCCCCCCCcHHHHHHHHHCHHHHHhcCccceEEEEccCC
Confidence 44555555542 37899999888899888888765 7776433333222222222222223 4556789999876
No 91
>COG1798 DPH5 Diphthamide biosynthesis methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=24.27 E-value=1.9e+02 Score=23.05 Aligned_cols=52 Identities=19% Similarity=0.197 Sum_probs=30.1
Q ss_pred HHHHHHHhCC---CeEEEeCChHHHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHhh-----ccCCCCeEEEEcCCC
Q 032117 78 RVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST-----RFRKHDEIIVVSPCI 147 (147)
Q Consensus 78 ~el~~~~~~~---~~lIDVR~~~e~~~ghIpGAinip~~~~~~~~~~~~~~~l~~~~~-----~l~~d~~IVvyC~s~ 147 (147)
+-+++..+.| .+++|++... .+++..+.. +.+-+..+ .+.+|..+|+.|+-|
T Consensus 149 d~Ik~N~~~GLHTl~lLDi~~~~----------r~Mt~~ea~--------~~LLe~e~~~~~~~~~~d~~~vvvaR~G 208 (260)
T COG1798 149 DVIKENLERGLHTLVLLDIKEDE----------RYMTANEAL--------ELLLEAEERRGRGVLTEDTLAVVVARAG 208 (260)
T ss_pred HHHHHhhhcCccceEEEEecccc----------cccCHHHHH--------HHHHHHHHHhcCCCcCCCceEEEEEecC
Confidence 4566666666 5899999865 455543100 11111111 256888999988754
No 92
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=24.18 E-value=2.1e+02 Score=22.52 Aligned_cols=72 Identities=19% Similarity=0.173 Sum_probs=42.2
Q ss_pred ccCHHHHHHHHhC----C-CeEEEeCChHHHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHhhccCCCCeEEEEcCCC
Q 032117 74 SVPVRVAHELLQA----G-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVVSPCI 147 (147)
Q Consensus 74 ~Is~~el~~~~~~----~-~~lIDVR~~~e~~~ghIpGAinip~~~~~~~~~~~~~~~l~~~~~~l~~d~~IVvyC~s~ 147 (147)
..+.++++++++. | ..||.|++.+|.+...--|+..|-.....-..+..+.+...++...++++ ++++..||
T Consensus 134 ~L~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~ga~iiGINnRdL~t~~vd~~~~~~L~~~ip~~--~~~IsESG 210 (247)
T PRK13957 134 ILTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLALDCGAEIIGINTRDLDTFQIHQNLVEEVAAFLPPN--IVKVGESG 210 (247)
T ss_pred hCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhCCCC--cEEEEcCC
Confidence 4566667766642 5 58999999999875444455555554222223444555556666667654 44554444
No 93
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=22.73 E-value=1.1e+02 Score=23.46 Aligned_cols=11 Identities=18% Similarity=0.132 Sum_probs=9.5
Q ss_pred CCeEEEEcCCC
Q 032117 137 HDEIIVVSPCI 147 (147)
Q Consensus 137 d~~IVvyC~s~ 147 (147)
+.||||+|..|
T Consensus 193 ~~pivVHC~~G 203 (258)
T smart00194 193 TGPIVVHCSAG 203 (258)
T ss_pred CCCEEEEeCCC
Confidence 67999999876
No 94
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=21.94 E-value=96 Score=24.82 Aligned_cols=11 Identities=18% Similarity=0.120 Sum_probs=9.1
Q ss_pred CCeEEEEcCCC
Q 032117 137 HDEIIVVSPCI 147 (147)
Q Consensus 137 d~~IVvyC~s~ 147 (147)
+.||||+|..|
T Consensus 229 ~~PIvVHCsaG 239 (303)
T PHA02742 229 EPPILVHCSAG 239 (303)
T ss_pred CCCeEEECCCC
Confidence 46999999865
No 95
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=21.78 E-value=92 Score=23.32 Aligned_cols=12 Identities=17% Similarity=0.094 Sum_probs=9.9
Q ss_pred CCCeEEEEcCCC
Q 032117 136 KHDEIIVVSPCI 147 (147)
Q Consensus 136 ~d~~IVvyC~s~ 147 (147)
.+.||+|+|..|
T Consensus 165 ~~~pivVHC~~G 176 (231)
T cd00047 165 GSGPIVVHCSAG 176 (231)
T ss_pred CCCCeEEECCCC
Confidence 467999999876
No 96
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=21.21 E-value=96 Score=21.32 Aligned_cols=27 Identities=15% Similarity=0.409 Sum_probs=22.2
Q ss_pred CcccCHHHHHHHHhCC--CeEEEeCChHH
Q 032117 72 PTSVPVRVAHELLQAG--HRYLDVRTPEE 98 (147)
Q Consensus 72 ~~~Is~~el~~~~~~~--~~lIDVR~~~e 98 (147)
-.-|+.+++++++.+| +.|+|+.+-++
T Consensus 17 S~YITLedi~~lV~~g~~f~V~DakTgeD 45 (107)
T TIGR01848 17 SSYVTLEDIRDLVREGREFQVVDSKSGDD 45 (107)
T ss_pred cceeeHHHHHHHHHCCCeEEEEECCCCch
Confidence 4569999999999876 78999997544
Done!