BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032118
         (147 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9LXA9|BH061_ARATH Transcription factor bHLH61 OS=Arabidopsis thaliana GN=BHLH61 PE=2
           SV=1
          Length = 315

 Score = 34.7 bits (78), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 13/72 (18%)

Query: 35  PTGPSRLLSTIAERE--GMKADPVDLTEFVDFVKLNKLQTDCFFIGKNQYIVTT------ 86
           PT P  ++ST++  E  G++ +   ++ F DF     LQ  CF +G+ +Y+VT+      
Sbjct: 248 PTKPGLVVSTVSTLETLGLEIEQCVISCFSDF----SLQASCFEVGEQRYMVTSEATKQA 303

Query: 87  -IHENWFCARCL 97
            I    +  RCL
Sbjct: 304 LIRNAGYGGRCL 315


>sp|Q8WVB6|CTF18_HUMAN Chromosome transmission fidelity protein 18 homolog OS=Homo sapiens
           GN=CHTF18 PE=1 SV=1
          Length = 975

 Score = 34.3 bits (77), Expect = 0.26,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 3/33 (9%)

Query: 26  KAALLINYDPTGPSRLLSTIAE---REGMKADP 55
           + A L+++ PT PSRL+  + E   R+GM+ADP
Sbjct: 503 QQAFLLHFPPTLPSRLVQRLQEVSLRQGMRADP 535


>sp|Q25154|CHHB_HOMAM Crustacean hyperglycemic hormones isoform B OS=Homarus americanus
           PE=1 SV=2
          Length = 134

 Score = 31.2 bits (69), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 20/32 (62%)

Query: 64  FVKLNKLQTDCFFIGKNQYIVTTIHENWFCAR 95
           F KLN++  DC+ + +  +IVTT  EN +  R
Sbjct: 76  FKKLNRVCEDCYNLYRKPFIVTTCRENCYSNR 107


>sp|Q86ZC1|KINH_BOTFU Kinesin heavy chain OS=Botryotinia fuckeliana GN=klp1 PE=3 SV=1
          Length = 880

 Score = 30.4 bits (67), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 9/68 (13%)

Query: 11  EKWASTSVGSSGEPLKAALLINYDPTGPSRLLST------IAEREGMKADPVDLTEFVDF 64
           E+WA    G SG   KAA      P+ PSRL +       +AER      P+D  E  +F
Sbjct: 379 EQWAPPLAGVSG--AKAAAAQTPRPSTPSRLATESRAETPVAERSATPGIPIDKDEREEF 436

Query: 65  VKL-NKLQ 71
           ++  N+LQ
Sbjct: 437 LRRENELQ 444


>sp|P12423|PYHD_NPVMB Polyhedrin OS=Mamestra brassicae nuclear polyhedrosis virus GN=PH
           PE=3 SV=1
          Length = 246

 Score = 30.0 bits (66), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 6/60 (10%)

Query: 1   MDWS---FVHKTWEKWASTS--VGSSGEPLKAALLINYDPTGPSRLLSTIAEREGMKADP 55
           ++WS   F+ +TW ++   S  + +  E +   L+IN  PT P+R    +A+   ++ DP
Sbjct: 88  VNWSGKEFLRETWTRFMEDSFPIVNDQEVMDVFLVINMRPTRPNRCFKFLAQH-ALRCDP 146


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.132    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,517,097
Number of Sequences: 539616
Number of extensions: 1749116
Number of successful extensions: 3965
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 3961
Number of HSP's gapped (non-prelim): 7
length of query: 147
length of database: 191,569,459
effective HSP length: 106
effective length of query: 41
effective length of database: 134,370,163
effective search space: 5509176683
effective search space used: 5509176683
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)