BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032119
(147 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VZT0|NLAL1_ARATH Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1
OS=Arabidopsis thaliana GN=At3g03920 PE=2 SV=1
Length = 202
Score = 181 bits (459), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 85/98 (86%), Positives = 94/98 (95%)
Query: 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESY 102
DEGPP+EVVEV++F+HACEGDAVTKL+ EKIP+FNAPIYL+NKTQIGKVDEIFGPINES
Sbjct: 51 DEGPPSEVVEVATFVHACEGDAVTKLSQEKIPHFNAPIYLENKTQIGKVDEIFGPINESL 110
Query: 103 FSVKMMEGIVATSYSLGDKFYIDPSKLLPLARFLPQPK 140
FS+KMMEGIVATSYS GDKF+IDP KLLPLARFLPQPK
Sbjct: 111 FSIKMMEGIVATSYSPGDKFFIDPYKLLPLARFLPQPK 148
>sp|Q9FK53|NLAL2_ARATH H/ACA ribonucleoprotein complex subunit 1-like protein 2
OS=Arabidopsis thaliana GN=At5g18180 PE=2 SV=1
Length = 189
Score = 175 bits (443), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 82/98 (83%), Positives = 91/98 (92%)
Query: 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESY 102
DEGPP+EVVEV++FLHACEGDAV KL+N KIP+FNAPIYLQNKTQIG+VDEIFGPINES
Sbjct: 38 DEGPPSEVVEVATFLHACEGDAVFKLSNVKIPHFNAPIYLQNKTQIGRVDEIFGPINESL 97
Query: 103 FSVKMMEGIVATSYSLGDKFYIDPSKLLPLARFLPQPK 140
FS+KM EGIVATSYS GDKF+I P KLLPL+RFLPQPK
Sbjct: 98 FSIKMREGIVATSYSQGDKFFISPEKLLPLSRFLPQPK 135
>sp|Q6CJ45|GAR1_KLULA H/ACA ribonucleoprotein complex subunit 1 OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=GAR1 PE=3 SV=1
Length = 219
Score = 144 bits (363), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 69/110 (62%), Positives = 85/110 (77%), Gaps = 2/110 (1%)
Query: 35 GRGGFGFR--DEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVD 92
RGGFG R +GPP V+E+ +FLH CEGD V + N KIPYFNAPIYL+NKTQ+GKVD
Sbjct: 18 SRGGFGGRAAPQGPPDSVLEMGAFLHPCEGDIVCRSINTKIPYFNAPIYLENKTQVGKVD 77
Query: 93 EIFGPINESYFSVKMMEGIVATSYSLGDKFYIDPSKLLPLARFLPQPKCS 142
EI GP+NE +F+VK +G+ A S+S GDKFYI P KLLP+ RFLP+PK +
Sbjct: 78 EILGPLNEVFFTVKCSDGVKAESFSEGDKFYIAPDKLLPIERFLPKPKVA 127
>sp|Q6FSB0|GAR1_CANGA H/ACA ribonucleoprotein complex subunit 1 OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /
NRRL Y-65) GN=GAR1 PE=3 SV=1
Length = 222
Score = 138 bits (348), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 61/99 (61%), Positives = 78/99 (78%)
Query: 44 EGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYF 103
+GPP V+E+ F+H CEGD V + N K+PYFNAPIYL+NKTQ+GKVDEI GP+NE YF
Sbjct: 32 QGPPDTVLEMGEFMHPCEGDVVCRSINTKVPYFNAPIYLENKTQVGKVDEILGPLNEVYF 91
Query: 104 SVKMMEGIVATSYSLGDKFYIDPSKLLPLARFLPQPKCS 142
++K EG+ ATS+ GDKFYI P KLLP+ RF+P+PK +
Sbjct: 92 TIKCGEGVQATSFKEGDKFYIAPDKLLPIERFIPKPKVA 130
>sp|Q2HH48|GAR1_CHAGB H/ACA ribonucleoprotein complex subunit 1 OS=Chaetomium globosum
(strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 /
NRRL 1970) GN=GAR1 PE=3 SV=1
Length = 210
Score = 137 bits (344), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 63/98 (64%), Positives = 78/98 (79%)
Query: 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESY 102
D GPPA V+E+ F+HACEG+ V + TN K+P+FNAPIYL+NKT +GKVDE+ GPIN+ Y
Sbjct: 30 DMGPPATVLEMGKFIHACEGEMVIESTNPKVPHFNAPIYLENKTAVGKVDEVLGPINQVY 89
Query: 103 FSVKMMEGIVATSYSLGDKFYIDPSKLLPLARFLPQPK 140
F++K EGI ATS+ GDKFYI KLLPL RFLP+PK
Sbjct: 90 FTIKPSEGIQATSFKYGDKFYIAGEKLLPLERFLPKPK 127
>sp|P28007|GAR1_YEAST H/ACA ribonucleoprotein complex subunit 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=GAR1 PE=1
SV=1
Length = 205
Score = 136 bits (343), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 61/97 (62%), Positives = 77/97 (79%)
Query: 44 EGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYF 103
+GPP V+E+ +FLH CEGD V + N KIPYFNAPIYL+NKTQ+GKVDEI GP+NE +F
Sbjct: 31 QGPPDTVLEMGAFLHPCEGDIVCRSINTKIPYFNAPIYLENKTQVGKVDEILGPLNEVFF 90
Query: 104 SVKMMEGIVATSYSLGDKFYIDPSKLLPLARFLPQPK 140
++K +G+ ATS+ GDKFYI KLLP+ RFLP+PK
Sbjct: 91 TIKCGDGVQATSFKEGDKFYIAADKLLPIERFLPKPK 127
>sp|A3GHP2|GAR1_PICST H/ACA ribonucleoprotein complex subunit 1 OS=Scheffersomyces
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 /
NRRL Y-11545) GN=GAR1 PE=3 SV=1
Length = 202
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 62/97 (63%), Positives = 77/97 (79%)
Query: 44 EGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYF 103
+GPP V+E+ +F+ ACEGD V + N KIPYFNAPIYL+NKTQIGKVDEI GP+NE +F
Sbjct: 23 QGPPDTVLEMGAFMQACEGDIVCRSINVKIPYFNAPIYLENKTQIGKVDEILGPLNEVFF 82
Query: 104 SVKMMEGIVATSYSLGDKFYIDPSKLLPLARFLPQPK 140
++K EG+ A S+ GDKF+I P KLLPL RFLP+PK
Sbjct: 83 TIKPSEGVKADSFKEGDKFFIGPDKLLPLERFLPKPK 119
>sp|Q6BVF9|GAR1_DEBHA H/ACA ribonucleoprotein complex subunit 1 OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=GAR1 PE=3 SV=1
Length = 215
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 61/97 (62%), Positives = 77/97 (79%)
Query: 44 EGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYF 103
+GPP V+E+ +F+ +CEGD V + N KIPYFNAPIYL+NKTQ+GKVDEI GP+NE +F
Sbjct: 23 QGPPDTVLEMGAFMQSCEGDIVCRSINVKIPYFNAPIYLENKTQVGKVDEILGPVNEVFF 82
Query: 104 SVKMMEGIVATSYSLGDKFYIDPSKLLPLARFLPQPK 140
++K EG+ A S+ GDKFYI P KLLPL RFLP+PK
Sbjct: 83 TIKPSEGVQADSFKDGDKFYIGPDKLLPLERFLPKPK 119
>sp|P0CN78|GAR1_CRYNJ H/ACA ribonucleoprotein complex subunit 1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21 /
ATCC MYA-565) GN=GAR1 PE=3 SV=1
Length = 203
Score = 130 bits (327), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 76/102 (74%), Gaps = 1/102 (0%)
Query: 42 RDEGPPAEVVEVSSFLHACEGDAVTKLTN-EKIPYFNAPIYLQNKTQIGKVDEIFGPINE 100
RD GPP V+E+ SF H E + + LT KIPYFNAPIYLQNKTQIGKVDEI GPINE
Sbjct: 32 RDMGPPDTVLEIGSFQHDVESEMLCSLTAPTKIPYFNAPIYLQNKTQIGKVDEILGPINE 91
Query: 101 SYFSVKMMEGIVATSYSLGDKFYIDPSKLLPLARFLPQPKCS 142
YF+VKM +G++A+S+ DK YI KLLP+ RFLP+PK +
Sbjct: 92 VYFTVKMEQGMLASSFKKEDKVYISGEKLLPIERFLPKPKVA 133
>sp|P0CN79|GAR1_CRYNB H/ACA ribonucleoprotein complex subunit 1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
GN=GAR1 PE=3 SV=1
Length = 203
Score = 130 bits (327), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 76/102 (74%), Gaps = 1/102 (0%)
Query: 42 RDEGPPAEVVEVSSFLHACEGDAVTKLTN-EKIPYFNAPIYLQNKTQIGKVDEIFGPINE 100
RD GPP V+E+ SF H E + + LT KIPYFNAPIYLQNKTQIGKVDEI GPINE
Sbjct: 32 RDMGPPDTVLEIGSFQHDVESEMLCSLTAPTKIPYFNAPIYLQNKTQIGKVDEILGPINE 91
Query: 101 SYFSVKMMEGIVATSYSLGDKFYIDPSKLLPLARFLPQPKCS 142
YF+VKM +G++A+S+ DK YI KLLP+ RFLP+PK +
Sbjct: 92 VYFTVKMEQGMLASSFKKEDKVYISGEKLLPIERFLPKPKVA 133
>sp|A6SDR8|GAR1_BOTFB H/ACA ribonucleoprotein complex subunit 1 OS=Botryotinia fuckeliana
(strain B05.10) GN=GAR1 PE=3 SV=1
Length = 221
Score = 129 bits (325), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 63/95 (66%), Positives = 73/95 (76%)
Query: 42 RDEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINES 101
RD GPPA+V + SFLHA EG+ V + N KIPYFNAPIYL+NKT IGKVDEI GPIN+
Sbjct: 39 RDNGPPADVFAMGSFLHASEGEIVCESINTKIPYFNAPIYLENKTSIGKVDEILGPINQV 98
Query: 102 YFSVKMMEGIVATSYSLGDKFYIDPSKLLPLARFL 136
YF++K EGI ATS+ GDKFYI KLLPL +FL
Sbjct: 99 YFTIKPTEGIQATSFKTGDKFYIGGDKLLPLEKFL 133
>sp|Q1E6M1|GAR1_COCIM H/ACA ribonucleoprotein complex subunit 1 OS=Coccidioides immitis
(strain RS) GN=GAR1 PE=3 SV=1
Length = 203
Score = 129 bits (324), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 65/105 (61%), Positives = 78/105 (74%), Gaps = 1/105 (0%)
Query: 28 GGGRGGGGRGGFGFRDEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQ 87
GG GGRGG + GPP V+E+ SF+HACEG+ V + N KIPYFNAPIYL+NKT
Sbjct: 19 GGFSARGGRGGMQ-QSFGPPTTVLEMGSFMHACEGEMVCESINPKIPYFNAPIYLENKTP 77
Query: 88 IGKVDEIFGPINESYFSVKMMEGIVATSYSLGDKFYIDPSKLLPL 132
+GKVDE+ GPIN+ YF++K EGIVATS+ GDKFYI KLLPL
Sbjct: 78 VGKVDEVLGPINQVYFTIKPQEGIVATSFKPGDKFYIGGDKLLPL 122
>sp|Q6AYA1|GAR1_RAT H/ACA ribonucleoprotein complex subunit 1 OS=Rattus norvegicus
GN=Gar1 PE=2 SV=1
Length = 226
Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 61/101 (60%), Positives = 75/101 (74%), Gaps = 2/101 (1%)
Query: 41 FRDEGPPAEVVEVSSFLHACEGDAVTKLTNE--KIPYFNAPIYLQNKTQIGKVDEIFGPI 98
F+D+GPP VV + F+H CE D V K T E K+PYFNAP+YL+NK QIGKVDEIFG +
Sbjct: 63 FQDQGPPERVVLLGEFMHPCEDDIVCKCTTEENKVPYFNAPVYLENKEQIGKVDEIFGQL 122
Query: 99 NESYFSVKMMEGIVATSYSLGDKFYIDPSKLLPLARFLPQP 139
+ YFSVK+ E + A+S+ KFYIDP KLLPL RFLP+P
Sbjct: 123 RDFYFSVKLSENMKASSFKKLQKFYIDPYKLLPLQRFLPRP 163
>sp|Q9CY66|GAR1_MOUSE H/ACA ribonucleoprotein complex subunit 1 OS=Mus musculus GN=Gar1
PE=2 SV=1
Length = 231
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 60/101 (59%), Positives = 75/101 (74%), Gaps = 2/101 (1%)
Query: 41 FRDEGPPAEVVEVSSFLHACEGDAVTKLTNE--KIPYFNAPIYLQNKTQIGKVDEIFGPI 98
F+D+GPP VV + F+H CE D V K T E K+PYFNAP+YL+NK Q+GKVDEIFG +
Sbjct: 72 FQDQGPPERVVLLGEFMHPCEDDIVCKCTTEENKVPYFNAPVYLENKEQVGKVDEIFGQL 131
Query: 99 NESYFSVKMMEGIVATSYSLGDKFYIDPSKLLPLARFLPQP 139
+ YFSVK+ E + A+S+ KFYIDP KLLPL RFLP+P
Sbjct: 132 RDFYFSVKLSENMKASSFKKLQKFYIDPYKLLPLQRFLPRP 172
>sp|Q5RJV1|GAR1_XENTR H/ACA ribonucleoprotein complex subunit 1 OS=Xenopus tropicalis
GN=gar1 PE=2 SV=1
Length = 218
Score = 127 bits (318), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 61/99 (61%), Positives = 76/99 (76%), Gaps = 2/99 (2%)
Query: 43 DEGPPAEVVEVSSFLHACEGDAVTK-LTNE-KIPYFNAPIYLQNKTQIGKVDEIFGPINE 100
D+GPP VVEV F+H CE D V K +T E ++PYFNAPIYL+NK QIGKVDEIFG + +
Sbjct: 56 DQGPPESVVEVGEFMHPCEDDVVCKCITQENRVPYFNAPIYLENKEQIGKVDEIFGQLRD 115
Query: 101 SYFSVKMMEGIVATSYSLGDKFYIDPSKLLPLARFLPQP 139
YFS+K+ E + A+S+ KFYIDP+KLLPL RFLP+P
Sbjct: 116 FYFSIKLSENMKASSFKKLQKFYIDPAKLLPLQRFLPRP 154
>sp|Q9NY12|GAR1_HUMAN H/ACA ribonucleoprotein complex subunit 1 OS=Homo sapiens GN=GAR1
PE=1 SV=1
Length = 217
Score = 126 bits (316), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 60/100 (60%), Positives = 74/100 (74%), Gaps = 2/100 (2%)
Query: 42 RDEGPPAEVVEVSSFLHACEGDAVTKLTNE--KIPYFNAPIYLQNKTQIGKVDEIFGPIN 99
+D+GPP VV + FLH CE D V K T + K+PYFNAP+YL+NK QIGKVDEIFG +
Sbjct: 62 QDQGPPERVVLLGEFLHPCEDDIVCKCTTDENKVPYFNAPVYLENKEQIGKVDEIFGQLR 121
Query: 100 ESYFSVKMMEGIVATSYSLGDKFYIDPSKLLPLARFLPQP 139
+ YFSVK+ E + A+S+ KFYIDP KLLPL RFLP+P
Sbjct: 122 DFYFSVKLSENMKASSFKKLQKFYIDPYKLLPLQRFLPRP 161
>sp|A1CVY3|GAR1_NEOFI H/ACA ribonucleoprotein complex subunit 1 OS=Neosartorya fischeri
(strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181)
GN=gar1 PE=3 SV=1
Length = 209
Score = 124 bits (310), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 58/88 (65%), Positives = 71/88 (80%)
Query: 45 GPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFS 104
GPPA+V+E+ +F+HACEG+ V + N KIPYFNAPIYL+NKT IGKVDE+ GPIN+ YF+
Sbjct: 35 GPPAQVLEMGTFMHACEGEMVCESVNPKIPYFNAPIYLENKTPIGKVDEVLGPINQVYFT 94
Query: 105 VKMMEGIVATSYSLGDKFYIDPSKLLPL 132
+K EGIVATS+ GDK YI KLLPL
Sbjct: 95 IKPQEGIVATSFKPGDKVYIGGDKLLPL 122
>sp|Q4P5P0|GAR1_USTMA H/ACA ribonucleoprotein complex subunit 1 OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=GAR1 PE=3 SV=1
Length = 227
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/101 (58%), Positives = 76/101 (75%), Gaps = 1/101 (0%)
Query: 41 FRDEGPPAEVVEVSSFLHACEGDAVTKLTNEK-IPYFNAPIYLQNKTQIGKVDEIFGPIN 99
+ + GPP V + SF+HA EG+ + + T+ K +PYFNAPIYL+NK+QIGKVDEI GPIN
Sbjct: 36 YANAGPPETVQPMGSFMHAVEGEMLCQSTDAKHVPYFNAPIYLENKSQIGKVDEILGPIN 95
Query: 100 ESYFSVKMMEGIVATSYSLGDKFYIDPSKLLPLARFLPQPK 140
E +F+VKM G+VATS+ DK YI KLLP+ RFLP+PK
Sbjct: 96 EVFFTVKMDPGMVATSFKADDKVYISGDKLLPIERFLPKPK 136
>sp|Q7ZVE0|GAR1_DANRE H/ACA ribonucleoprotein complex subunit 1 OS=Danio rerio GN=gar1
PE=2 SV=1
Length = 226
Score = 119 bits (298), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 57/100 (57%), Positives = 72/100 (72%), Gaps = 2/100 (2%)
Query: 42 RDEGPPAEVVEVSSFLHACEGDAVTKLTNE--KIPYFNAPIYLQNKTQIGKVDEIFGPIN 99
+D GPP VV + F+H CE + V K E K+PYFNAP+YL+NK QIGKVDEIFG +
Sbjct: 56 QDYGPPEYVVALGEFMHPCEDEIVCKCVTEENKVPYFNAPVYLENKEQIGKVDEIFGQLR 115
Query: 100 ESYFSVKMMEGIVATSYSLGDKFYIDPSKLLPLARFLPQP 139
+ YFSVK+ + + A+S+ KFYIDP KLLPL RFLP+P
Sbjct: 116 DFYFSVKLSDNMKASSFKKLQKFYIDPMKLLPLQRFLPRP 155
>sp|Q757V8|GAR1_ASHGO H/ACA ribonucleoprotein complex subunit 1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=GAR1 PE=3 SV=1
Length = 212
Score = 118 bits (295), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/102 (55%), Positives = 74/102 (72%), Gaps = 10/102 (9%)
Query: 46 PPAEVVEVSSFLHACEGD-----AVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINE 100
PP VVE+ +F+H CEGD N KIPYFNA IYL+NKT++GKVDEI GP+NE
Sbjct: 34 PPDSVVEMGAFMHDCEGDIVCRS-----INTKIPYFNAMIYLENKTEVGKVDEILGPLNE 88
Query: 101 SYFSVKMMEGIVATSYSLGDKFYIDPSKLLPLARFLPQPKCS 142
+F++K EG+ A+S+ GDKFYI P KLLP+ RF+P+PK +
Sbjct: 89 VFFTIKCAEGVKASSFKDGDKFYISPEKLLPIERFIPKPKVA 130
>sp|Q61B10|GAR1_CAEBR Probable H/ACA ribonucleoprotein complex subunit 1-like protein
OS=Caenorhabditis briggsae GN=CBG13541 PE=3 SV=1
Length = 246
Score = 116 bits (290), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 55/96 (57%), Positives = 69/96 (71%)
Query: 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESY 102
D+GPP EVV V F H C+ D V T+ KIPYFNAPIY +NK Q+GK+DEIFG E+
Sbjct: 61 DQGPPEEVVLVGVFSHKCQDDIVCNNTSGKIPYFNAPIYFENKEQVGKIDEIFGSPGENG 120
Query: 103 FSVKMMEGIVATSYSLGDKFYIDPSKLLPLARFLPQ 138
FSV + +G+ A+S+ G + YIDP KLLP+ RFLPQ
Sbjct: 121 FSVTLSQGVKASSFKSGSELYIDPGKLLPVERFLPQ 156
>sp|Q9TYK1|GAR1_CAEEL Probable H/ACA ribonucleoprotein complex subunit 1-like protein
OS=Caenorhabditis elegans GN=Y66H1A.4 PE=3 SV=2
Length = 244
Score = 113 bits (282), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 54/96 (56%), Positives = 68/96 (70%)
Query: 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESY 102
D+GPP EVV V F H C+ D V T+ KIPYFNAPIY +NK Q+GK+DEIFG E+
Sbjct: 53 DQGPPEEVVLVGVFSHQCQDDIVCNNTSGKIPYFNAPIYFKNKEQVGKIDEIFGSPGENG 112
Query: 103 FSVKMMEGIVATSYSLGDKFYIDPSKLLPLARFLPQ 138
FSV + +G+ A+S+ + YIDP KLLP+ RFLPQ
Sbjct: 113 FSVTLSQGVKASSFEPESQLYIDPGKLLPVDRFLPQ 148
>sp|Q7KVQ0|GAR1_DROME Probable H/ACA ribonucleoprotein complex subunit 1 OS=Drosophila
melanogaster GN=CG4038 PE=1 SV=1
Length = 237
Score = 109 bits (272), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 70/97 (72%)
Query: 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESY 102
D GPP V+ + +++++C+ D V K+ + +PYFNAPI+L+NK Q+GK+DEIFG + +
Sbjct: 62 DTGPPERVIPLGNYVYSCQNDLVCKVDIQDVPYFNAPIFLENKEQVGKIDEIFGTVRDYS 121
Query: 103 FSVKMMEGIVATSYSLGDKFYIDPSKLLPLARFLPQP 139
S+K+ + + A S+ K +IDP KLLP+ARFLP+P
Sbjct: 122 VSIKLSDNVYANSFKPNQKLFIDPGKLLPIARFLPKP 158
>sp|Q06975|GAR1_SCHPO H/ACA ribonucleoprotein complex subunit 1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=gar1 PE=2 SV=1
Length = 194
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 52/104 (50%), Positives = 70/104 (67%), Gaps = 13/104 (12%)
Query: 41 FRDEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINE 100
F GPP +V+E+ F+H CEG+ V + TN KIPYFNAPIYL+NK+QIGK+DE+FGP+N+
Sbjct: 21 FTPSGPPDQVIELGLFMHDCEGEMVCQSTNVKIPYFNAPIYLENKSQIGKIDEVFGPMNQ 80
Query: 101 SYFSVKMMEGIVATSYSLGDK-------------FYIDPSKLLP 131
YF+VK EGIV++S+ +GDK F P + P
Sbjct: 81 VYFTVKPSEGIVSSSFKVGDKVYLSGDKLIPLDRFLPKPKTVGP 124
>sp|Q54XE6|GAR1_DICDI Probable H/ACA ribonucleoprotein complex subunit 1 OS=Dictyostelium
discoideum GN=gar1 PE=3 SV=1
Length = 230
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 60/93 (64%), Gaps = 1/93 (1%)
Query: 49 EVVEVSSFLHACEGDAVTKLT-NEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKM 107
E +E+ F H CE V KLT E++P FN + +K IG VDEIFGPIN+ +FSVK+
Sbjct: 61 ENIEIGVFSHVCEEQIVCKLTATEQVPKFNCKVLSSSKNTIGSVDEIFGPINKVFFSVKL 120
Query: 108 MEGIVATSYSLGDKFYIDPSKLLPLARFLPQPK 140
G+ ATS+ DK ++D + +LP+ FL +PK
Sbjct: 121 DSGVQATSFKENDKIFVDSNSVLPIKIFLEEPK 153
>sp|O96722|GAR1_ENCCU H/ACA ribonucleoprotein complex subunit 1 OS=Encephalitozoon
cuniculi (strain GB-M1) GN=GAR1 PE=3 SV=1
Length = 195
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 12/106 (11%)
Query: 38 GFGFRDEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGP 97
F R E E+ L+ C+G V KL + IPY N+P+ + IGKVDEI G
Sbjct: 17 NFNNRKRLKSTETAELGKILYMCQGQLVIKLAAKDIPYPNSPVLDASSKIIGKVDEILGR 76
Query: 98 INESYFSVKMMEGIV-----ATSYSLGDKFYIDPSKLLPLARFLPQ 138
I++ + ++K + T +S DKF +P RFLP+
Sbjct: 77 IDDVHVTIKPDDQCSISKEGETLFSYADKF-------IPKKRFLPR 115
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.146 0.461
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,764,554
Number of Sequences: 539616
Number of extensions: 3746128
Number of successful extensions: 89753
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1530
Number of HSP's successfully gapped in prelim test: 505
Number of HSP's that attempted gapping in prelim test: 27229
Number of HSP's gapped (non-prelim): 29501
length of query: 147
length of database: 191,569,459
effective HSP length: 106
effective length of query: 41
effective length of database: 134,370,163
effective search space: 5509176683
effective search space used: 5509176683
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)