Query 032119
Match_columns 147
No_of_seqs 141 out of 332
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 15:52:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032119.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032119hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u28_C H/ACA ribonucleoprotein 100.0 1.2E-46 4E-51 280.7 8.1 97 41-137 18-114 (114)
2 2ey4_C Small nucleolar RNP sim 99.9 2E-28 6.7E-33 173.1 4.9 76 47-126 5-81 (82)
3 2hvy_B GAR1, small nucleolar R 99.9 5.9E-27 2E-31 172.1 6.9 75 47-127 5-82 (104)
4 2eqn_A Hypothetical protein LO 99.9 1.8E-24 6.1E-29 158.2 5.3 80 46-125 20-103 (103)
5 2v3m_A NAF1; ribosomal protein 99.9 1.7E-23 5.7E-28 158.9 6.3 81 47-127 27-114 (131)
6 4df3_A Fibrillarin-like rRNA/T 98.1 3.4E-07 1.2E-11 74.1 0.6 63 56-132 8-84 (233)
7 3id6_C Fibrillarin-like rRNA/T 95.4 0.0026 8.8E-08 50.9 -0.1 52 56-114 8-68 (232)
8 2pk2_A Cyclin-T1, protein TAT; 65.9 1.3 4.3E-05 37.3 0.0 9 60-68 317-325 (358)
9 2pk2_A Cyclin-T1, protein TAT; 48.5 3.7 0.00013 34.4 0.0 9 60-68 320-328 (358)
10 2ipx_A RRNA 2'-O-methyltransfe 46.8 6.5 0.00022 29.3 1.2 36 48-89 3-44 (233)
11 4gjz_A Lysine-specific demethy 40.3 7.7 0.00026 28.8 0.6 28 115-147 204-234 (235)
12 1fbn_A MJ fibrillarin homologu 40.0 17 0.00059 27.0 2.6 32 57-90 7-46 (230)
13 1nt2_A Fibrillarin-like PRE-rR 33.2 17 0.00058 27.2 1.6 25 57-85 2-29 (210)
14 3l48_A Outer membrane usher pr 31.7 41 0.0014 23.0 3.2 30 71-104 19-48 (94)
15 2dgy_A MGC11102 protein; EIF-1 30.8 31 0.0011 24.7 2.5 10 85-94 15-24 (111)
16 3h9n_A Ribosome maturation fac 30.4 42 0.0014 25.3 3.4 33 76-108 101-133 (177)
17 2a7y_A Hypothetical protein RV 30.3 62 0.0021 22.4 3.9 46 54-110 1-48 (83)
18 2xet_A CAF1A usher, F1 capsule 26.5 47 0.0016 22.0 2.7 31 71-105 13-44 (89)
19 2hc8_A PACS, cation-transporti 24.3 42 0.0014 23.4 2.2 25 111-135 25-49 (113)
20 2f1l_A 16S rRNA processing pro 22.8 49 0.0017 25.3 2.5 33 76-109 119-152 (187)
21 1wb1_A Translation elongation 22.2 36 0.0012 29.1 1.8 60 60-126 414-477 (482)
22 3iz5_B 60S ribosomal protein L 21.3 92 0.0031 25.6 4.0 22 114-135 80-107 (261)
No 1
>3u28_C H/ACA ribonucleoprotein complex subunit 1; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_C
Probab=100.00 E-value=1.2e-46 Score=280.67 Aligned_cols=97 Identities=61% Similarity=1.090 Sum_probs=91.2
Q ss_pred CCCCCCCceEEecceeeeeeCCeEEEeccCCCcCCCCCceeeccceeecccccccCcceeccEEEEecCcccccccccCC
Q 032119 41 FRDEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSLGD 120 (147)
Q Consensus 41 ~~~~Gpp~~vielG~f~H~~eg~lV~K~t~~~VPyfNa~Vy~ekk~~IGkVdEIFGpi~e~yfsvKl~~gI~a~sfk~gd 120 (147)
++|+|||++|++||+|+|+||++||||+|+++||||||+||+|||++||||||||||++++||||||.++|+|+||+++|
T Consensus 18 ~~~~gpp~~v~elG~f~H~ceg~lV~k~~~~~VP~fNapVy~enK~~IGKVdEIFGPin~~YfsVK~~~gv~a~Sfk~gd 97 (114)
T 3u28_C 18 GSHMGPPDTVLEMGAFLHPCEGDIVCRSINTKIPYFNAPIYLENKTQVGKVDEILGPLNEVFFTIKCGDGVQATSFKEGD 97 (114)
T ss_dssp -----CCSCEEEEEEEEEEETTEEEEEECSSSEECTTCEEECTTCCEEEEEEEEESBTTSCEEEEEECTTCCGGGCCTTC
T ss_pred CCCCCCCHHHheeeeEEEEeCCeEEEEeCCCCCCCCCCEeEccCCccceeEeEEeCCCCccEEEEEecCCCcccccccCC
Confidence 46999999999999999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCeeecccccC
Q 032119 121 KFYIDPSKLLPLARFLP 137 (147)
Q Consensus 121 kiyI~p~KlLpl~rFlp 137 (147)
+|||+++|||||+||||
T Consensus 98 k~YId~~kllPl~rFlp 114 (114)
T 3u28_C 98 KFYIAADKLLPIERFLP 114 (114)
T ss_dssp EEEEEGGGEECGGGGCC
T ss_pred EEEECccccCcHHhcCC
Confidence 99999999999999997
No 2
>2ey4_C Small nucleolar RNP similar to GAR1; trimeric complex, structural genomics, PSI, protein structur initiative; 2.11A {Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3mqk_C 2rfk_C
Probab=99.95 E-value=2e-28 Score=173.13 Aligned_cols=76 Identities=21% Similarity=0.450 Sum_probs=68.9
Q ss_pred CceEEecceeeeee-CCeEEEeccCCCcCCCCCceeeccceeecccccccCcceeccEEEEecCcccccccccCCEEEec
Q 032119 47 PAEVVEVSSFLHAC-EGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSLGDKFYID 125 (147)
Q Consensus 47 p~~vielG~f~H~~-eg~lV~K~t~~~VPyfNa~Vy~ekk~~IGkVdEIFGpi~e~yfsvKl~~gI~a~sfk~gdkiyI~ 125 (147)
-++|++||+|+|.| ++++|||++ ++||||++||+||+++||||+|||||++++||+||+++ ..+.|| ++|+|||+
T Consensus 5 ~~~mk~lG~~~h~~~~g~lV~k~~--~~P~~na~Vy~e~~~~IGkV~dIfGPv~~pY~sVk~~~-~~~~s~-~g~klYi~ 80 (82)
T 2ey4_C 5 GEKMKRLGKVLHYAKQGFLIVRTN--WVPSLNDRVVDKRLQFVGIVKDVFGPVKMPYVAIKPKV-SNPEIY-VGEVLYVD 80 (82)
T ss_dssp ---CBCCCCEEEEETTTEEEEECS--SCCCTTCEEECTTCCCCEEEEEEEEESSSCEEEEEECS-SSCSTT-BTCCCEEC
T ss_pred cceeEEeEEEEEEcCCCCEEEEeC--CCCCCCCEeEcCCCCEeEEEEEEECCCCCcEEEEEeCC-CChhhc-CCCeEEec
Confidence 47899999999999 999999985 79999999999999999999999999999999999998 567888 89999999
Q ss_pred C
Q 032119 126 P 126 (147)
Q Consensus 126 p 126 (147)
|
T Consensus 81 ~ 81 (82)
T 2ey4_C 81 E 81 (82)
T ss_dssp -
T ss_pred C
Confidence 8
No 3
>2hvy_B GAR1, small nucleolar RNP similar to GAR1; H/ACA RNA, RNP, pseudouridine synthase, guide RNA, isomerase biosynthetic protein-RNA complex; HET: ATP; 2.30A {Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3hay_B*
Probab=99.93 E-value=5.9e-27 Score=172.14 Aligned_cols=75 Identities=20% Similarity=0.438 Sum_probs=67.2
Q ss_pred CceEEecceeeeee-CCeEEEeccCCCcCCCCCceeeccceeecccccccCcceeccEEEEecCcccccccc--cCCEEE
Q 032119 47 PAEVVEVSSFLHAC-EGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYS--LGDKFY 123 (147)
Q Consensus 47 p~~vielG~f~H~~-eg~lV~K~t~~~VPyfNa~Vy~ekk~~IGkVdEIFGpi~e~yfsvKl~~gI~a~sfk--~gdkiy 123 (147)
-++|++||+|+|.| +++||||++ ++||||++||+||+++||+|||||||++++||+||+++. +|+ ++|+||
T Consensus 5 ~~~mk~lG~~~H~~~~g~lVvk~~--~vP~~na~Vy~enk~~IGKV~DIfGPV~~pY~sVKp~~~----s~~~~~G~klY 78 (104)
T 2hvy_B 5 GEKMKRLGKVLHYAKQGFLIVRTN--WVPSLNDRVVDKRLQFVGIVKDVFGPVKMPYVAIKPKVS----NPEIYVGEVLY 78 (104)
T ss_dssp ---CEEEEEEEEEETTTEEEEECS--SCCCTTCEEECTTCCEEEEEEEEEEESSSCEEEEEECSS----CGGGGTTCEEE
T ss_pred cceeeEeEEEEEEcCCCCEEEEeC--CCCCCCCEeEcCCCCEeEEEEEEECCCCCcEEEEEecCC----CccccCCCEEE
Confidence 47899999999999 999999985 799999999999999999999999999999999999972 455 899999
Q ss_pred ecCC
Q 032119 124 IDPS 127 (147)
Q Consensus 124 I~p~ 127 (147)
|++.
T Consensus 79 I~~~ 82 (104)
T 2hvy_B 79 VDER 82 (104)
T ss_dssp ECC-
T ss_pred EcCc
Confidence 9987
No 4
>2eqn_A Hypothetical protein LOC92345; NAF1 domain, hypothetical protein BC008207 [HOMO sapiens], structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=1.8e-24 Score=158.21 Aligned_cols=80 Identities=16% Similarity=0.340 Sum_probs=74.0
Q ss_pred CCc-eEEecceeeeeeCCeEEEeccCC-CcCCCCCceeeccceeecccccccCcceeccEEEEec--CcccccccccCCE
Q 032119 46 PPA-EVVEVSSFLHACEGDAVTKLTNE-KIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMM--EGIVATSYSLGDK 121 (147)
Q Consensus 46 pp~-~vielG~f~H~~eg~lV~K~t~~-~VPyfNa~Vy~ekk~~IGkVdEIFGpi~e~yfsvKl~--~gI~a~sfk~gdk 121 (147)
||+ +|++||+|+|.|++.+|||++.+ .+|++|+.||+|||++||||+|||||++++||+||++ ++|.+.+|+.+|+
T Consensus 20 ~~~~~v~~lG~v~~~~e~~vvik~~~~~~vl~~~s~l~~edk~~IGkV~EiFGpV~~PyysVk~~~~~~i~a~~~~~G~k 99 (103)
T 2eqn_A 20 PEDIELKPLGMVSSIIEQLVIIESMTNLPPVNEETVIFKSDRQAAGKIFEIFGPVAHPFYVLRFNSSDHIESKGIKIKET 99 (103)
T ss_dssp CTTSCCEEEEEEEEECSSSEEEEECSSCCCCCTTCEEECTTSBEEEEEEEEESCSSSCEEEECCSSHHHHHHHTCCTTCE
T ss_pred CCCCeeEEeEEEEEEcCCeEEEEeCCCCcCCcCCCEEEecCCcEEEEEEEEECCCCCCEEEEEeCcccccccccccCCCE
Confidence 454 78899999999999999999866 5999999999999999999999999999999999995 4889999999999
Q ss_pred EEec
Q 032119 122 FYID 125 (147)
Q Consensus 122 iyI~ 125 (147)
|||+
T Consensus 100 vY~~ 103 (103)
T 2eqn_A 100 MYFA 103 (103)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9985
No 5
>2v3m_A NAF1; ribosomal protein, GAR1, snoRNP, phosphorylation, hypothetical protein; 2.74A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.7e-23 Score=158.92 Aligned_cols=81 Identities=20% Similarity=0.389 Sum_probs=74.1
Q ss_pred CceEEecceeeeeeCCeEEEeccC---CCcCCCCCceeeccceeecccccccCcceeccEEEEec----CcccccccccC
Q 032119 47 PAEVVEVSSFLHACEGDAVTKLTN---EKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMM----EGIVATSYSLG 119 (147)
Q Consensus 47 p~~vielG~f~H~~eg~lV~K~t~---~~VPyfNa~Vy~ekk~~IGkVdEIFGpi~e~yfsvKl~----~gI~a~sfk~g 119 (147)
-++|++||+|+|.|++++|||++. ..+|++|++||+|||++||+|+|||||++++||+||++ ++|.+.++++|
T Consensus 27 ~~~v~~lG~i~~ive~~vVik~~~~g~~~vl~~~s~l~ledr~~IGkV~EiFGpV~~P~ysVk~~~~~~e~i~~~~~~~G 106 (131)
T 2v3m_A 27 KTIITPIGVLKSAFENNIIIHATMSGEKRVLKEGSIFCLEDRTLIGMLTEVFGPLQNPFYRIKLPDSKKNLFDELKVRLG 106 (131)
T ss_dssp TSCEEEEEEEEEEETTEEEEEEC-----CCCCTTCEEEETTCCEEEECCEEESCSSSCEEEEECCGGGHHHHHHHHTTTT
T ss_pred CCEEEEeeeEEEEeCCcEEEEecCCCCccccCCCCEEEecCCcEEEEEEEEeCCCCCcEEEEEeCCcchhhhhhcccCCC
Confidence 367999999999999999999875 36999999999999999999999999999999999998 45899999999
Q ss_pred CEEEecCC
Q 032119 120 DKFYIDPS 127 (147)
Q Consensus 120 dkiyI~p~ 127 (147)
|+|||++.
T Consensus 107 ~kvY~~~~ 114 (131)
T 2v3m_A 107 EKAFIVTP 114 (131)
T ss_dssp SEEEEEC-
T ss_pred CEEEECcC
Confidence 99999997
No 6
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=98.15 E-value=3.4e-07 Score=74.10 Aligned_cols=63 Identities=16% Similarity=0.214 Sum_probs=51.9
Q ss_pred eee-eeCCeEEEe--------ccCCCcCCCCCceeeccceeecccccccCcceec----cEEEEecCcccccccccCCEE
Q 032119 56 FLH-ACEGDAVTK--------LTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINES----YFSVKMMEGIVATSYSLGDKF 122 (147)
Q Consensus 56 f~H-~~eg~lV~K--------~t~~~VPyfNa~Vy~ekk~~IGkVdEIFGpi~e~----yfsvKl~~gI~a~sfk~gdki 122 (147)
..| ++++++|++ +|.|++| +.+||+|+..++.. +|| ++++||+++|..+ .|.|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~l~t~n~~~--g~~vyge~~~~~~~--------~e~r~w~p~rsklaa~i~~g----l~~l 73 (233)
T 4df3_A 8 SRHDRWRGVYVVELEDGSLRIATKNLVP--GQRVYGERIFRYNG--------EEYREWNAYRSKLAAALLKG----LIEL 73 (233)
T ss_dssp EECSSSTTEEEEEETTSCEEEEEECSST--TCCSSSCCEEEETT--------EEEEECCTTTCHHHHHHHTT----CSCC
T ss_pred eEecccCCEEEEEccCCceeEEEecCCC--CCcccCceEEEcCC--------ceeeeECCCchHHHHHHHhc----hhhc
Confidence 468 789999997 5889999 99999999887643 355 8999999998776 6778
Q ss_pred EecCC-Ceeec
Q 032119 123 YIDPS-KLLPL 132 (147)
Q Consensus 123 yI~p~-KlLpl 132 (147)
+|.|+ ++|.|
T Consensus 74 ~ikpG~~Vldl 84 (233)
T 4df3_A 74 PVKEGDRILYL 84 (233)
T ss_dssp CCCTTCEEEEE
T ss_pred CCCCCCEEEEe
Confidence 88887 77765
No 7
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=95.40 E-value=0.0026 Score=50.89 Aligned_cols=52 Identities=17% Similarity=0.134 Sum_probs=37.8
Q ss_pred eeeeeCCeEEEe--------ccCCCcCCCCCceeeccceeecccc-cccCcceeccEEEEecCccccc
Q 032119 56 FLHACEGDAVTK--------LTNEKIPYFNAPIYLQNKTQIGKVD-EIFGPINESYFSVKMMEGIVAT 114 (147)
Q Consensus 56 f~H~~eg~lV~K--------~t~~~VPyfNa~Vy~ekk~~IGkVd-EIFGpi~e~yfsvKl~~gI~a~ 114 (147)
..|+++++++++ +|+|++| +..||.|+...+...+ + .-+ ++.+|+++.+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~t~~~~p--g~~vy~e~~~~~~~~~yr----~w~-~~~skla~~ll~~ 68 (232)
T 3id6_C 8 KQTNMENIYECEFNDGSFRLCTRNLVP--NFNVYGERLIKYEGVEYR----EWN-AFRSKLAGAILKG 68 (232)
T ss_dssp EECSSTTEEEEECTTSCEEEEEECSST--TCCSSSCCEEEETTEEEE----ECC-TTTCHHHHHHHTT
T ss_pred EeeccCcEEEEEccCCcceEEEecccC--CCCcccceeeeecCcchh----hhc-hHHHHHHHHHHhh
Confidence 367899999997 4889999 9999999998874321 1 111 5688888776543
No 8
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=65.91 E-value=1.3 Score=37.34 Aligned_cols=9 Identities=11% Similarity=-0.267 Sum_probs=0.0
Q ss_pred eCCeEEEec
Q 032119 60 CEGDAVTKL 68 (147)
Q Consensus 60 ~eg~lV~K~ 68 (147)
|-...||=+
T Consensus 317 ~~~~~~~~~ 325 (358)
T 2pk2_A 317 NYHCQLCFL 325 (358)
T ss_dssp ---------
T ss_pred ceecHHHhc
Confidence 333344443
No 9
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=48.51 E-value=3.7 Score=34.42 Aligned_cols=9 Identities=22% Similarity=0.335 Sum_probs=0.0
Q ss_pred eCCeEEEec
Q 032119 60 CEGDAVTKL 68 (147)
Q Consensus 60 ~eg~lV~K~ 68 (147)
|+-.|+-|+
T Consensus 320 ~~~~~~~~~ 328 (358)
T 2pk2_A 320 CQLCFLRSL 328 (358)
T ss_dssp ---------
T ss_pred cHHHhcccc
Confidence 444444443
No 10
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=46.83 E-value=6.5 Score=29.35 Aligned_cols=36 Identities=25% Similarity=0.466 Sum_probs=26.9
Q ss_pred ceEEecceeeeeeCCeEEEe------ccCCCcCCCCCceeeccceeec
Q 032119 48 AEVVEVSSFLHACEGDAVTK------LTNEKIPYFNAPIYLQNKTQIG 89 (147)
Q Consensus 48 ~~vielG~f~H~~eg~lV~K------~t~~~VPyfNa~Vy~ekk~~IG 89 (147)
+.+++ .|.+++.++++ .|.|..| +..||.|+...+.
T Consensus 3 ~~~~~----~~~~~g~~~~~~~~~~~~~~n~~~--~~~vy~e~~~~~~ 44 (233)
T 2ipx_A 3 NVMVE----PHRHEGVFICRGKEDALVTKNLVP--GESVYGEKRVSIS 44 (233)
T ss_dssp --CCE----ECSSTTEEECC-----CEEECSST--TCCSSSCCEEEEC
T ss_pred ceEEe----ecccCceEEEecCCceEEEEecCC--CcccccceEEEec
Confidence 45555 49999999998 3557777 8999999887764
No 11
>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A*
Probab=40.31 E-value=7.7 Score=28.76 Aligned_cols=28 Identities=29% Similarity=0.460 Sum_probs=20.6
Q ss_pred ccccCCEEEecCC---CeeecccccCCCCCCCCccC
Q 032119 115 SYSLGDKFYIDPS---KLLPLARFLPQPKCSVSHWY 147 (147)
Q Consensus 115 sfk~gdkiyI~p~---KlLpl~rFlp~p~~~~~~~~ 147 (147)
.+++||.|||.++ .+.-|+. -=+|++||
T Consensus 204 ~l~pGD~LyiP~gW~H~V~~l~~-----sisvn~w~ 234 (235)
T 4gjz_A 204 ILSPGEILFIPVKYWHYVRALDL-----SFSVSFWW 234 (235)
T ss_dssp EECTTCEEEECTTCEEEEEESSS-----EEEEEEEE
T ss_pred EECCCCEEEeCCCCcEEEEECCC-----EEEEEEec
Confidence 4577999999998 7776653 24677775
No 12
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=39.98 E-value=17 Score=27.04 Aligned_cols=32 Identities=19% Similarity=0.209 Sum_probs=24.6
Q ss_pred eeeeCCeEEEec--------cCCCcCCCCCceeeccceeecc
Q 032119 57 LHACEGDAVTKL--------TNEKIPYFNAPIYLQNKTQIGK 90 (147)
Q Consensus 57 ~H~~eg~lV~K~--------t~~~VPyfNa~Vy~ekk~~IGk 90 (147)
.|++++.++++. |.|..| +..||+|+...+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~vyge~~~~~~~ 46 (230)
T 1fbn_A 7 KEIFENIYEVDLGDGLKRIATKSIVK--GKKVYDEKIIKIGD 46 (230)
T ss_dssp EEETTTEEEEECSSSCCCEEEECSST--TCCSSSCCEEEETT
T ss_pred ccccCcEEEEecCCCceeeeEEccCC--CCCccCceEEeecc
Confidence 389999999982 456667 89999998877643
No 13
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=33.18 E-value=17 Score=27.23 Aligned_cols=25 Identities=12% Similarity=0.022 Sum_probs=20.2
Q ss_pred eeeeCCeEEEe---ccCCCcCCCCCceeeccc
Q 032119 57 LHACEGDAVTK---LTNEKIPYFNAPIYLQNK 85 (147)
Q Consensus 57 ~H~~eg~lV~K---~t~~~VPyfNa~Vy~ekk 85 (147)
.|.++++++++ +|.+++| .||+|+.
T Consensus 2 ~~~~~~~~~~~~~~~t~~~~~----~~Y~~~~ 29 (210)
T 1nt2_A 2 KELMRNVYLLDDTLVTKSKYG----SHYGEKV 29 (210)
T ss_dssp CEEETTEEEETTEEEEECSCC----CSSSCCE
T ss_pred CcccCcEEEEeeeEeeccCCc----cccchhh
Confidence 58899999997 4788888 8888844
No 14
>3l48_A Outer membrane usher protein PAPC; IG fold, greek KEY, cell outer membrane, fimbrium, transmembrane, transport, transport protein; 2.10A {Escherichia coli} PDB: 2kt6_A
Probab=31.74 E-value=41 Score=23.03 Aligned_cols=30 Identities=20% Similarity=0.359 Sum_probs=21.1
Q ss_pred CCcCCCCCceeeccceeecccccccCcceeccEE
Q 032119 71 EKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFS 104 (147)
Q Consensus 71 ~~VPyfNa~Vy~ekk~~IGkVdEIFGpi~e~yfs 104 (147)
.+.+-|++.|++++...+|-|.+ --.+|++
T Consensus 19 G~plPfGA~V~d~~g~~~giVG~----~G~vyl~ 48 (94)
T 3l48_A 19 GSQPPFGASVTSEKGRELGMVAD----EGLAWLS 48 (94)
T ss_dssp SCCCCTTCEEECTTCCEEEEBCG----GGEEEES
T ss_pred CCcCCCccEEEcCCCceEEEECC----CCEEEEE
Confidence 35555899999998888888753 4455544
No 15
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.84 E-value=31 Score=24.70 Aligned_cols=10 Identities=30% Similarity=0.228 Sum_probs=4.3
Q ss_pred ceeecccccc
Q 032119 85 KTQIGKVDEI 94 (147)
Q Consensus 85 k~~IGkVdEI 94 (147)
-+.+++|.+.
T Consensus 15 ge~~g~V~~~ 24 (111)
T 2dgy_A 15 QQQIVRVLRT 24 (111)
T ss_dssp SCEEEEEEEC
T ss_pred CeEEEEEEEe
Confidence 3444444443
No 16
>3h9n_A Ribosome maturation factor RIMM; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Haemophilus influenzae}
Probab=30.40 E-value=42 Score=25.25 Aligned_cols=33 Identities=15% Similarity=0.187 Sum_probs=24.5
Q ss_pred CCCceeeccceeecccccccCcceeccEEEEec
Q 032119 76 FNAPIYLQNKTQIGKVDEIFGPINESYFSVKMM 108 (147)
Q Consensus 76 fNa~Vy~ekk~~IGkVdEIFGpi~e~yfsvKl~ 108 (147)
++-.|++++...+|+|.+|+=.-.+-.+.||..
T Consensus 101 iGl~V~~~~g~~lG~V~~v~~~gandvl~V~~~ 133 (177)
T 3h9n_A 101 IGCTVVNLEGYTMGTVTEMMETGSNDVLVVKAN 133 (177)
T ss_dssp TTCEEEETTCCEEEEEEEEEESSSCEEEEEECC
T ss_pred cCCEEEeCCCCEEEEEEEEeeCCCcEEEEEEec
Confidence 577899999999999999875333334677754
No 17
>2a7y_A Hypothetical protein RV2302/MT2359; anti-parallel beta sheet, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.34.6.3
Probab=30.28 E-value=62 Score=22.36 Aligned_cols=46 Identities=24% Similarity=0.237 Sum_probs=31.8
Q ss_pred ceeeeeeCC-eEEEeccCCCcCCCCCceeeccceeecccccccCcceeccEEEEe-cCc
Q 032119 54 SSFLHACEG-DAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKM-MEG 110 (147)
Q Consensus 54 G~f~H~~eg-~lV~K~t~~~VPyfNa~Vy~ekk~~IGkVdEIFGpi~e~yfsvKl-~~g 110 (147)
|+.||+.-+ .||++...-..| .+.|.|-|+-|+--.++|.|+- +++
T Consensus 1 g~~M~A~vGDrlvv~g~~vg~~-----------~R~GeIvEV~g~dG~PPY~VRw~ddG 48 (83)
T 2a7y_A 1 GSHMHAKVGDYLVVKGTTTERH-----------DQHAEIIEVRSADGSPPYVVRWLVNG 48 (83)
T ss_dssp ---CCCCTTEEEEESCTTTSCC-----------EEEEEEEECSCSSSCSCEEEEETTTT
T ss_pred CCccCccCCCEEEEecCcCCCC-----------CcEEEEEEEECCCCCCCEEEEecCCC
Confidence 466787765 677776433444 5678889999999999999996 554
No 18
>2xet_A CAF1A usher, F1 capsule-anchoring protein; transport protein; 1.60A {Yersinia pestis}
Probab=26.48 E-value=47 Score=21.96 Aligned_cols=31 Identities=16% Similarity=0.183 Sum_probs=20.8
Q ss_pred CCcCCCCCce-eeccceeecccccccCcceeccEEE
Q 032119 71 EKIPYFNAPI-YLQNKTQIGKVDEIFGPINESYFSV 105 (147)
Q Consensus 71 ~~VPyfNa~V-y~ekk~~IGkVdEIFGpi~e~yfsv 105 (147)
.+.+-|++.| ++++...+|-|.+ --.+|++-
T Consensus 13 G~~lPfGa~V~~~~~g~~~giVg~----~G~vyl~g 44 (89)
T 2xet_A 13 NKPVPFGSIVTIEGQSSSSGIVGD----NSGVYLTG 44 (89)
T ss_dssp SCBCCTTCEEEETTCCSCCEECCT----TSEEEEEE
T ss_pred CCcCCCccEEEECCCCCEEEEEcC----CCEEEEEC
Confidence 3433499999 9887777888853 44556543
No 19
>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB, actuator, transport protein; 1.65A {Archaeoglobus fulgidus} PDB: 2voy_F
Probab=24.34 E-value=42 Score=23.35 Aligned_cols=25 Identities=16% Similarity=0.438 Sum_probs=19.6
Q ss_pred ccccccccCCEEEecCCCeeecccc
Q 032119 111 IVATSYSLGDKFYIDPSKLLPLARF 135 (147)
Q Consensus 111 I~a~sfk~gdkiyI~p~KlLpl~rF 135 (147)
|.+..+.+||.|.+.++..+|.+=.
T Consensus 25 i~~~~l~~GDiv~v~~G~~iPaDg~ 49 (113)
T 2hc8_A 25 VPVEEVAVGDIVIVRPGEKIPVDGV 49 (113)
T ss_dssp EEGGGCCTTCEEEECTTCBCCSEEE
T ss_pred EEHHHCCCCCEEEECCCCEEeeeEE
Confidence 4566788899999999988887643
No 20
>2f1l_A 16S rRNA processing protein; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS unknown function; HET: UNL; 2.46A {Pseudomonas aeruginosa} SCOP: b.41.1.4 b.43.3.4
Probab=22.79 E-value=49 Score=25.30 Aligned_cols=33 Identities=18% Similarity=0.226 Sum_probs=25.2
Q ss_pred CCCceeeccceeecccccccCcc-eeccEEEEecC
Q 032119 76 FNAPIYLQNKTQIGKVDEIFGPI-NESYFSVKMME 109 (147)
Q Consensus 76 fNa~Vy~ekk~~IGkVdEIFGpi-~e~yfsvKl~~ 109 (147)
++-.||+++.+.+|+|.||+=.- +++ +.||...
T Consensus 119 IGl~V~~~~g~~lG~V~~v~~~ganDv-lvV~~~~ 152 (187)
T 2f1l_A 119 EGLKVIDQGRQLLGVIDHLLETGANDV-MVVKPCA 152 (187)
T ss_dssp TTCEEEETTSCEEEEEEEEECCSSSCE-EEEECCT
T ss_pred CCeEEEeCCCCEEEEEEEEccCCCcEE-EEEEeCC
Confidence 48889999888999999988643 455 5777654
No 21
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=22.24 E-value=36 Score=29.13 Aligned_cols=60 Identities=17% Similarity=0.280 Sum_probs=44.7
Q ss_pred eCCeEEEec----cCCCcCCCCCceeeccceeecccccccCcceeccEEEEecCcccccccccCCEEEecC
Q 032119 60 CEGDAVTKL----TNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSLGDKFYIDP 126 (147)
Q Consensus 60 ~eg~lV~K~----t~~~VPyfNa~Vy~ekk~~IGkVdEIFGpi~e~yfsvKl~~gI~a~sfk~gdkiyI~p 126 (147)
.+...||+. +.+...|.+..|++...+..|.|++=||.. =+|++-..++|.. .|++++.-
T Consensus 414 ~~~~~i~~~lf~~~~~~~~f~g~~v~~~~g~~~G~I~~~fg~~--G~~~~~f~~~~~~-----~d~v~~~~ 477 (482)
T 1wb1_A 414 DKGRTVIDGLAQSKVAAEKLIGEEISIEGKDIVGKIKGTFGTK--GLLTAEFSGNVEN-----RDKVILNR 477 (482)
T ss_dssp CSSCCEETTSCSSHHHHHHSCSCCCEETTTCCCBCCCCCBTTT--TBBCCCBSSCCCS-----SCEEEEEC
T ss_pred cCCEEEEEcCccchhhhHHhcCcEEEEcCCceEEEEeccCCCC--ceEEEEecCCCCC-----CCeeeeeh
Confidence 556888883 224567899999999988779999999963 3467777776655 48888764
No 22
>3iz5_B 60S ribosomal protein L2 (L2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_B 2zkr_a
Probab=21.35 E-value=92 Score=25.61 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=15.6
Q ss_pred cccccCCEEEe------cCCCeeecccc
Q 032119 114 TSYSLGDKFYI------DPSKLLPLARF 135 (147)
Q Consensus 114 ~sfk~gdkiyI------~p~KlLpl~rF 135 (147)
..+++||.|+. .++++|||...
T Consensus 80 eGl~vGd~I~sG~~a~i~~GN~LPL~~I 107 (261)
T 3iz5_B 80 EGMYTGQFVYCGRRATLSIGNVLPIRSV 107 (261)
T ss_dssp TTCBTTCEEEBSTTCCSCTTCEEEGGGS
T ss_pred cCCCCCCEEEeCCCCCCCCCCEeccccC
Confidence 35566788774 46689999865
Done!