BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032121
(147 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8W4F1|PAP10_ARATH Probable plastid-lipid-associated protein 10, chloroplastic
OS=Arabidopsis thaliana GN=PAP10 PE=1 SV=1
Length = 284
Score = 249 bits (637), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 118/146 (80%), Positives = 136/146 (93%)
Query: 2 GEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVV 61
GE ID VKLDGTWRLQYTSAPDV+VLFEAA+RLPFF+VGQ+FQKFECRD+SDGG+I NVV
Sbjct: 101 GEEIDPVKLDGTWRLQYTSAPDVVVLFEAASRLPFFQVGQVFQKFECRDRSDGGIIRNVV 160
Query: 62 RWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRS 121
+WS+P LLE++EGATLVV+AKFD VS RNIYLQFEE++V+NI I+E+LQALIAPAILPRS
Sbjct: 161 QWSLPSLLEEQEGATLVVTAKFDKVSSRNIYLQFEEISVRNININEQLQALIAPAILPRS 220
Query: 122 FLSLQILQFIRAFKAQIPVTNTTPGR 147
FLSLQ+LQFIR FKAQIPV T+PGR
Sbjct: 221 FLSLQLLQFIRTFKAQIPVNATSPGR 246
>sp|Q9LW57|PAP6_ARATH Probable plastid-lipid-associated protein 6, chloroplastic
OS=Arabidopsis thaliana GN=PAP6 PE=1 SV=1
Length = 284
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 53/113 (46%), Gaps = 18/113 (15%)
Query: 2 GEPIDLV----KLDGTWRLQYTSAPDVLVLFEAAARLPFFK-----VGQIFQKFECRDKS 52
G P+DL KL G WRL Y+SA L + LP + +GQ+FQ+ + K
Sbjct: 123 GGPVDLTDDLDKLQGKWRLLYSSAFSSRSLGGSRPGLPTGRLIPVTLGQVFQRIDVFSK- 181
Query: 53 DGGVICNV---VRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQN 102
D I V W PPL AT ++ KF+++ I + FE+ TV+
Sbjct: 182 DFDNIAEVELGAPWPFPPLE-----ATATLAHKFELLGTCKIKITFEKTTVKT 229
>sp|Q94FZ9|PAP1_BRACM Plastid lipid-associated protein 1, chloroplastic OS=Brassica
campestris GN=PAP1 PE=1 SV=1
Length = 327
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 14/103 (13%)
Query: 10 LDGTWRLQYTSAPDVLVLFEAAARL--PFFKVGQIFQKFECRDKSDGGVICNVVRWSVPP 67
L+G W L YTS + LF +R P KV +I Q + SD + N VR++ P
Sbjct: 151 LNGKWILVYTS---FVGLFPLLSRRISPLVKVDEISQTID----SDSFTVHNSVRFASP- 202
Query: 68 LLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQ 110
+L +AKF+V S + + ++FE+ + +++ ++
Sbjct: 203 ----LATTSLSTNAKFEVRSPKRVQVKFEQGVIGTPQLTDSIE 241
>sp|O49629|PAP2_ARATH Probable plastid-lipid-associated protein 2, chloroplastic
OS=Arabidopsis thaliana GN=PAP2 PE=1 SV=1
Length = 310
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 50/101 (49%), Gaps = 10/101 (9%)
Query: 10 LDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVPPLL 69
L+G W L YTS ++ L +P KV +I Q + SD + N VR++ P
Sbjct: 134 LNGKWILAYTSFVNLFPLLSRGI-VPLIKVDEISQTID----SDNFTVQNSVRFAGPLGT 188
Query: 70 EKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQ 110
++ +AKF++ S + + ++FE+ + +++ ++
Sbjct: 189 N-----SISTNAKFEIRSPKRVQIKFEQGVIGTPQLTDSIE 224
>sp|Q96398|CHRC_CUCSA Chromoplast-specific carotenoid-associated protein, chromoplast
OS=Cucumis sativus GN=CHRC PE=1 SV=1
Length = 322
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 11/91 (12%)
Query: 7 LVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVP 66
L L+G W L YT+ + L + LP KV +I Q + S+ + N V++S P
Sbjct: 144 LTLLNGKWILAYTTFAGLFPLL--SRNLPLVKVEEISQTID----SENLTVQNSVQFSGP 197
Query: 67 PLLEKEEGATLVVSAKFDVVSVRNIYLQFEE 97
++ +AKF+V S ++++FEE
Sbjct: 198 -----LATTSITTNAKFEVRSPLRVHIKFEE 223
>sp|Q9VR91|HERC2_DROME Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster
GN=HERC2 PE=1 SV=3
Length = 4912
Score = 34.7 bits (78), Expect = 0.21, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 9/125 (7%)
Query: 17 QYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGAT 76
+Y A +++ E A P ++ ++ R + GG++ N + VPP + E
Sbjct: 1509 RYCKAHNLMWHQEFATEHPVQELERLLSAVLIRHQYLGGLVLNALETEVPPPRQLGEIIR 1568
Query: 77 LVVSAKFDVVSVR-NIYLQFEEVTVQNIYISEELQAL---IAPAILP--RSFLSLQILQF 130
LV AK+ VV R + ++EV I E L+ L + PAI P R L ILQ
Sbjct: 1569 LVHQAKWSVVRTRQQLNRSYKEVCAP---ILERLRFLLYEVRPAISPQQRGLRRLPILQR 1625
Query: 131 IRAFK 135
FK
Sbjct: 1626 PPRFK 1630
>sp|Q94KU6|PAP2_BRACM Plastid lipid-associated protein 2, chloroplastic OS=Brassica
campestris GN=PAP2 PE=1 SV=1
Length = 319
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 15/110 (13%)
Query: 4 PID-LVKLDGTWRLQYTSAPDVLVLFEAAAR--LPFFKVGQIFQKFECRDKSDGGVICNV 60
P D L L+G W L YTS + LF +R +P KV +I Q + SD + N
Sbjct: 136 PTDALFLLNGKWILAYTS---FVGLFPLLSRGIVPLVKVDEISQTID----SDNFTVENS 188
Query: 61 VRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQ 110
V ++ P ++ +AKF++ S + + ++FEE + +++ ++
Sbjct: 189 VLFAGP-----LATTSISTNAKFEIRSPKRVQIKFEEGVIGTPQLTDSIE 233
>sp|Q6K439|PAP2_ORYSJ Probable plastid-lipid-associated protein 2, chloroplastic OS=Oryza
sativa subsp. japonica GN=PAP2 PE=2 SV=1
Length = 319
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 20/118 (16%)
Query: 7 LVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVP 66
L L+G W L YTS + L + + KV +I Q + S+ + N +++S P
Sbjct: 140 LTLLNGKWILAYTSFSQLFPLLGSGSLPQLVKVEEISQTID----SENFTVQNCIKFSGP 195
Query: 67 PLLEKEEGATLVVS--AKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRSF 122
AT VS AKF+V S + + ++F+E + +++ + +LP F
Sbjct: 196 L-------ATTSVSTNAKFEVRSPKRVQIKFDEGIIGTPQLTDSI-------VLPEKF 239
>sp|O81439|PAP1_ARATH Probable plastid-lipid-associated protein 1, chloroplastic
OS=Arabidopsis thaliana GN=PAP1 PE=1 SV=1
Length = 318
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 14/103 (13%)
Query: 10 LDGTWRLQYTSAPDVLVLFEAAARL--PFFKVGQIFQKFECRDKSDGGVICNVVRWSVPP 67
L+G W L YTS + LF +R P KV +I Q + SD + N VR++ P
Sbjct: 142 LNGKWILAYTS---FVGLFPLLSRRIEPLVKVDEISQTID----SDSFTVQNSVRFAGP- 193
Query: 68 LLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQ 110
+ +AKF++ S + + ++FE+ + +++ ++
Sbjct: 194 ----FSTTSFSTNAKFEIRSPKRVQIKFEQGVIGTPQLTDSIE 232
>sp|Q7XBW5|PAP3_ORYSJ Probable plastid-lipid-associated protein 3, chloroplastic OS=Oryza
sativa subsp. japonica GN=PAP3 PE=3 SV=1
Length = 374
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 11/109 (10%)
Query: 3 EPIDLVKL-DGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVV 61
EP+ L G W L YT+ ++L + A P FKV +I Q+ + + I N
Sbjct: 189 EPVQATHLLAGNWILIYTAYSELLPILAVGA-APLFKVDEISQEIDTNSMT----IVNAS 243
Query: 62 RWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQ 110
+ + +A FDV S I +QF+E + Q IS +
Sbjct: 244 T-----ISSPFASFSFSATASFDVQSPSRIEVQFKEGSFQPPKISSSVD 287
>sp|P80471|LIPC_SOLTU Light-induced protein, chloroplastic OS=Solanum tuberosum PE=1 SV=2
Length = 326
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 10/91 (10%)
Query: 7 LVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVP 66
L L+G W L YTS + L + LP +V +I Q + S+ + N V ++ P
Sbjct: 147 LTLLNGKWILAYTSFSGLFPLL-SRGNLPLVRVEEISQTID----SESFTVQNSVVFAGP 201
Query: 67 PLLEKEEGATLVVSAKFDVVSVRNIYLQFEE 97
++ +AKF+V S + + ++FEE
Sbjct: 202 -----LATTSISTNAKFEVRSPKRVQIKFEE 227
>sp|O99019|LIPC_SOLDE Light-induced protein, chloroplastic OS=Solanum demissum PE=1 SV=1
Length = 326
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 10/91 (10%)
Query: 7 LVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVP 66
L L+G W L YTS + L + LP +V +I Q + S+ + N V ++ P
Sbjct: 147 LTLLNGKWILAYTSFSGLFPLL-SRGNLPLVRVEEISQTID----SESFTVQNSVVFAGP 201
Query: 67 PLLEKEEGATLVVSAKFDVVSVRNIYLQFEE 97
++ +AKF+V S + + ++FEE
Sbjct: 202 -----LATTSISTNAKFEVRSPKRVQIKFEE 227
>sp|Q94KU5|PAP3_BRACM Plastid lipid-associated protein 3, chloroplastic OS=Brassica
campestris GN=PAP3 PE=2 SV=1
Length = 360
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 10/92 (10%)
Query: 10 LDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVPPLL 69
LDG W L YT+ ++L L AA P KV I Q + + S I N S P
Sbjct: 185 LDGNWVLLYTAFSELLPLL-AAGSTPLLKVKSISQSIDTKSLS----IDNSTTLSSP--- 236
Query: 70 EKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQ 101
+ +A F+V + I + F+E T++
Sbjct: 237 --FADFSFSATASFEVRTPSRIEVSFKEGTLK 266
>sp|O82291|PAP3_ARATH Probable plastid-lipid-associated protein 3, chloroplastic
OS=Arabidopsis thaliana GN=PAP3 PE=1 SV=1
Length = 376
Score = 32.7 bits (73), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 60/149 (40%), Gaps = 21/149 (14%)
Query: 10 LDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVPPLL 69
LDG W L YT+ +++ L AA P KV I Q + + +I N S P
Sbjct: 201 LDGNWVLLYTAFSELIPLL-AAGSTPLLKVKSISQSIDTNNL----IIDNSTTLSSP--- 252
Query: 70 EKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQ---------ALIAPAILPR 120
+ +A F+V S I + F+E T++ I + I+ ++L +
Sbjct: 253 --FADFSFSATASFEVRSPSRIEVSFKEGTLKPPVIKSSVDLPESVGVFGQQISLSLLKQ 310
Query: 121 SFLSLQIL--QFIRAFKAQIPVTNTTPGR 147
S LQ + RA Q P+ PG
Sbjct: 311 SLNPLQDVAANISRALSGQPPLKLPFPGN 339
>sp|Q1LU74|DER_BAUCH GTPase Der OS=Baumannia cicadellinicola subsp. Homalodisca
coagulata GN=der PE=3 SV=1
Length = 472
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 64 SVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRSFL 123
S+ L K + T ++ K D + + + LQF + + I+ LQ +L FL
Sbjct: 101 SIAKYLRKLQKPTFIIINKIDGIDITQVKLQFYAINIGQIFPIAALQGRGINILLKAVFL 160
Query: 124 SLQILQFIRAFKAQIPVTNTT 144
SL + IP+TN +
Sbjct: 161 SL--------IQNNIPLTNNS 173
>sp|Q9ZWQ8|PAP_CITUN Plastid-lipid-associated protein, chloroplastic OS=Citrus unshiu
GN=PAP PE=2 SV=1
Length = 323
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Query: 7 LVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVP 66
L L+ W L YTS + L + LP +V +I Q + S+ + N ++++ P
Sbjct: 144 LTLLNAKWILVYTSFSGLFPLL-SRGTLPLARVEEISQTID----SENFTVQNSIQFAGP 198
Query: 67 PLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEEL 109
++ +AKF+V S + + ++FEE + +++ L
Sbjct: 199 LAT-----TSISTNAKFEVRSPKRVQIKFEEGVIGTPQVTDSL 236
>sp|Q9ZP40|PG1_PEA Plastoglobulin-1, chloroplastic OS=Pisum sativum GN=PG1 PE=1 SV=1
Length = 358
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 10 LDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFEC 48
L+G W L YT++ ++L L AA LP K+ +I Q +
Sbjct: 183 LNGNWVLLYTASSELLPLL-AAGSLPLLKLDKISQTIDT 220
>sp|P13591|NCAM1_HUMAN Neural cell adhesion molecule 1 OS=Homo sapiens GN=NCAM1 PE=1 SV=3
Length = 858
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 14/100 (14%)
Query: 41 QIFQKF---------ECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNI 91
+IFQK E R+ D ++C+VV P ++ K +G +++ + + N
Sbjct: 113 KIFQKLMFKNAPTPQEFREGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN 172
Query: 92 YLQFEEVTVQNIYISEELQALIAPAILPRSFLSLQILQFI 131
YLQ ++ I ++E IL R ++ + +Q I
Sbjct: 173 YLQ-----IRGIKKTDEGTYRCEGRILARGEINFKDIQVI 207
>sp|P31836|NCAM1_BOVIN Neural cell adhesion molecule 1 OS=Bos taurus GN=NCAM1 PE=1 SV=1
Length = 853
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 14/100 (14%)
Query: 41 QIFQKF---------ECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNI 91
+IFQK E R+ D ++C+VV P ++ K +G +++ + + N
Sbjct: 113 KIFQKLMFKNAPTPQEFREGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLTNN 172
Query: 92 YLQFEEVTVQNIYISEELQALIAPAILPRSFLSLQILQFI 131
YLQ ++ I ++E IL R ++ + +Q I
Sbjct: 173 YLQ-----IRGIKKTDEGTYRCEGRILARGEINFKDIQVI 207
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.140 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,376,039
Number of Sequences: 539616
Number of extensions: 1823286
Number of successful extensions: 3512
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 3504
Number of HSP's gapped (non-prelim): 20
length of query: 147
length of database: 191,569,459
effective HSP length: 106
effective length of query: 41
effective length of database: 134,370,163
effective search space: 5509176683
effective search space used: 5509176683
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)