Query 032121
Match_columns 147
No_of_seqs 123 out of 184
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 15:55:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032121.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032121hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gzv_A Hypothetical protein; A 77.7 14 0.00047 28.0 8.2 66 5-90 7-73 (142)
2 4i95_A Putative uncharacterize 54.6 67 0.0023 24.2 9.9 80 5-105 7-87 (142)
3 1z8m_A Conserved hypothetical 34.6 12 0.00041 24.0 0.8 13 10-22 61-73 (88)
4 4acj_A WU\:FB25H12 protein,; i 23.6 21 0.00072 26.6 0.5 13 11-23 26-38 (167)
5 2otr_A Hypothetical protein HP 19.0 37 0.0012 22.1 0.9 12 11-22 62-73 (98)
6 2a6s_A Toxin YOEB; YEFM, antit 18.1 40 0.0014 21.1 0.9 13 10-22 60-72 (84)
7 2ggt_A SCO1 protein homolog, m 16.2 46 0.0016 22.5 0.9 20 2-21 13-32 (164)
8 3cmi_A Peroxiredoxin HYR1; thi 14.9 75 0.0026 22.1 1.8 20 2-21 22-41 (171)
9 3g5o_B Uncharacterized protein 14.6 62 0.0021 21.8 1.2 12 12-23 73-84 (102)
10 2rli_A SCO2 protein homolog, m 13.8 63 0.0022 22.1 1.1 20 2-21 16-35 (171)
No 1
>4gzv_A Hypothetical protein; AN eight-stranded beta barrel, lipocalin family, structural joint center for structural genomics, JCSG; 1.95A {Bacteroides ovatus}
Probab=77.71 E-value=14 Score=28.02 Aligned_cols=66 Identities=18% Similarity=0.286 Sum_probs=46.2
Q ss_pred CCccCCCceEEEEEecchhhHHHHHhhccCCc-eeeeeeeEEEeeecCCCCceEEEEEEecCCccccccCceeEEEEEEE
Q 032121 5 IDLVKLDGTWRLQYTSAPDVLVLFEAAARLPF-FKVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSAKF 83 (147)
Q Consensus 5 l~~~lL~G~WrLlYTTa~ell~ll~a~~~lP~-v~vG~IyQ~ID~~~~~~~~~v~Nvv~~~~P~~~~~~~G~~l~V~A~f 83 (147)
....-|.|-|++.+=-+. . ...|+ ++.+..|-.|. +++++.|+.-.. . +|+.++...+|
T Consensus 7 ~~~~~L~GvWQ~c~y~~~----~----~~~~~~l~~s~~~KIlS-----~DgtF~N~~m~~--~-----~~aiIt~yGtY 66 (142)
T 4gzv_A 7 FKAADLKGIWQLCHYVSE----S----PDVPGALKPSNTFKVLS-----DDGRIVNFTIIP--G-----ADAIITGYGTY 66 (142)
T ss_dssp GGSCCCCEEEEEEEEEES----S----TTSCCEEEEEEEEEEEC-----TTSEEEEEECCT--T-----SCCEEEEEEEE
T ss_pred cccccceEEeEEeeEeec----C----CCCCceEeecCceEEEC-----CCCcEEEEEEeC--C-----CCcEEEEeEEE
Confidence 456779999998844333 1 23354 78889999666 589999988542 2 34677888888
Q ss_pred EEcCCce
Q 032121 84 DVVSVRN 90 (147)
Q Consensus 84 ev~s~~R 90 (147)
+..|++.
T Consensus 67 ~l~SD~~ 73 (142)
T 4gzv_A 67 KQLTDDS 73 (142)
T ss_dssp EEEETTE
T ss_pred EecCCCe
Confidence 8888764
No 2
>4i95_A Putative uncharacterized protein; lipocalin-like domain of PF13924 family, structural genomics center for structural genomics, JCSG; HET: MSE; 1.81A {Bacteroides eggerthii} PDB: 4gzv_A
Probab=54.63 E-value=67 Score=24.23 Aligned_cols=80 Identities=18% Similarity=0.275 Sum_probs=52.1
Q ss_pred CCccCCCceEEEEEecchhhHHHHHhhccCCc-eeeeeeeEEEeeecCCCCceEEEEEEecCCccccccCceeEEEEEEE
Q 032121 5 IDLVKLDGTWRLQYTSAPDVLVLFEAAARLPF-FKVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSAKF 83 (147)
Q Consensus 5 l~~~lL~G~WrLlYTTa~ell~ll~a~~~lP~-v~vG~IyQ~ID~~~~~~~~~v~Nvv~~~~P~~~~~~~G~~l~V~A~f 83 (147)
....-|.|-|+|..=-+.+ -..|+ ++-|..+-.+. +++++.|+.-.. . +|+......+|
T Consensus 7 ~~~~~L~GvWQ~C~y~s~~--------pd~~g~L~psn~lKIlS-----dDgtF~Ni~m~~--~-----~~aiIt~~GtY 66 (142)
T 4i95_A 7 FEPAHLQGIWQLCHYVSEN--------PDIPGVLKPSNTFKVLS-----DDGRIVNFTIRP--G-----TDAIITGYGTY 66 (142)
T ss_dssp CCCCSCCEEEEEEEEECSS--------TTSCCEEEEEEEEEEEC-----TTSEEEEEECCT--T-----SCCEEEEEEEE
T ss_pred cCcccceeEeEEEEEecCC--------CCCceEeccCccEEEEc-----CCCcEEEEEEec--C-----CCcEEEEeEEE
Confidence 3456799999997654431 23444 67777888555 589999988773 2 34678888899
Q ss_pred EEcCCceEEEEEEEEEEecccc
Q 032121 84 DVVSVRNIYLQFEEVTVQNIYI 105 (147)
Q Consensus 84 ev~s~~RV~v~Fe~~~v~~~~i 105 (147)
+..|+....=.-++. +..+++
T Consensus 67 ~~~SD~~Y~E~IeKn-i~lp~l 87 (142)
T 4i95_A 67 RQISAAAYKESIEKN-IHLPML 87 (142)
T ss_dssp EEEETTEEEEEEEEE-SSSGGG
T ss_pred EecCCcceeeeeccc-ccCccc
Confidence 988876543333333 444443
No 3
>1z8m_A Conserved hypothetical protein HP0894; structural genomics, helicobac pylori, unknown function; NMR {Helicobacter pylori} SCOP: d.298.1.2
Probab=34.58 E-value=12 Score=23.95 Aligned_cols=13 Identities=15% Similarity=0.100 Sum_probs=9.3
Q ss_pred CCceEEEEEecch
Q 032121 10 LDGTWRLQYTSAP 22 (147)
Q Consensus 10 L~G~WrLlYTTa~ 22 (147)
++|+|||+|+=..
T Consensus 61 i~~dyrliY~i~~ 73 (88)
T 1z8m_A 61 IKPDVLLVYLVKD 73 (88)
T ss_dssp SSTTCEEEEEEET
T ss_pred ECCCEEEEEEEeC
Confidence 4688899997443
No 4
>4acj_A WU\:FB25H12 protein,; immune system; 0.97A {Danio rerio}
Probab=23.58 E-value=21 Score=26.61 Aligned_cols=13 Identities=15% Similarity=0.603 Sum_probs=11.1
Q ss_pred CceEEEEEecchh
Q 032121 11 DGTWRLQYTSAPD 23 (147)
Q Consensus 11 ~G~WrLlYTTa~e 23 (147)
.-+|+|+|+|+.+
T Consensus 26 ~~~w~LlYss~~h 38 (167)
T 4acj_A 26 GYPWNLAFSTSKH 38 (167)
T ss_dssp TCCCEEEEEHHHH
T ss_pred cCCCeEEEEeccC
Confidence 4579999999986
No 5
>2otr_A Hypothetical protein HP0892; anti-parallel beta sheet, structural genomics, unknown funct; NMR {Helicobacter pylori}
Probab=18.97 E-value=37 Score=22.11 Aligned_cols=12 Identities=17% Similarity=0.099 Sum_probs=7.6
Q ss_pred CceEEEEEecch
Q 032121 11 DGTWRLQYTSAP 22 (147)
Q Consensus 11 ~G~WrLlYTTa~ 22 (147)
+|+||++|+-..
T Consensus 62 ~~~yriiY~i~~ 73 (98)
T 2otr_A 62 KPDLLLVYQIKK 73 (98)
T ss_dssp ETTEEEEEEEET
T ss_pred CCCEEEEEEEcC
Confidence 466777776544
No 6
>2a6s_A Toxin YOEB; YEFM, antitoxin, addiction modules, RNAse, inhibitor; 1.77A {Escherichia coli} SCOP: d.298.1.1 PDB: 2a6r_A 2a6q_E
Probab=18.05 E-value=40 Score=21.14 Aligned_cols=13 Identities=23% Similarity=0.401 Sum_probs=8.0
Q ss_pred CCceEEEEEecch
Q 032121 10 LDGTWRLQYTSAP 22 (147)
Q Consensus 10 L~G~WrLlYTTa~ 22 (147)
+++.|||+|.-..
T Consensus 60 i~~~yRiiY~i~~ 72 (84)
T 2a6s_A 60 ITEEHRLVYAVTD 72 (84)
T ss_dssp SSSSCEEEEEECS
T ss_pred ECCCeEEEEEEEC
Confidence 3455888886443
No 7
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=16.18 E-value=46 Score=22.53 Aligned_cols=20 Identities=30% Similarity=0.375 Sum_probs=16.5
Q ss_pred CCCCCccCCCceEEEEEecc
Q 032121 2 GEPIDLVKLDGTWRLQYTSA 21 (147)
Q Consensus 2 ~~~l~~~lL~G~WrLlYTTa 21 (147)
|.+.+++.+.|+|.|+|-.+
T Consensus 13 G~~~~l~~~~gk~vll~f~~ 32 (164)
T 2ggt_A 13 GERKTDKDYLGQWLLIYFGF 32 (164)
T ss_dssp SCEEEGGGGTTCEEEEEEEC
T ss_pred CCEEeHHHcCCCEEEEEEEe
Confidence 67788888999999997544
No 8
>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}
Probab=14.89 E-value=75 Score=22.06 Aligned_cols=20 Identities=30% Similarity=0.439 Sum_probs=16.8
Q ss_pred CCCCCccCCCceEEEEEecc
Q 032121 2 GEPIDLVKLDGTWRLQYTSA 21 (147)
Q Consensus 2 ~~~l~~~lL~G~WrLlYTTa 21 (147)
|.+.+++.+.|+|.|+|=.+
T Consensus 22 G~~~~l~~~~Gk~vll~F~a 41 (171)
T 3cmi_A 22 GQPFPFDQLKGKVVLIVNVA 41 (171)
T ss_dssp SCBCCGGGGTTCEEEEEEEE
T ss_pred CCEecHHHcCCCEEEEEEEe
Confidence 77889999999999998543
No 9
>3g5o_B Uncharacterized protein RV2866; heterotetramer, 1:1 ratio, structural genomics, PSI-2, prote structure initiative; 2.00A {Mycobacterium tuberculosis}
Probab=14.57 E-value=62 Score=21.78 Aligned_cols=12 Identities=42% Similarity=0.772 Sum_probs=8.6
Q ss_pred ceEEEEEecchh
Q 032121 12 GTWRLQYTSAPD 23 (147)
Q Consensus 12 G~WrLlYTTa~e 23 (147)
|.||++|+=..+
T Consensus 73 g~yRiIY~i~~~ 84 (102)
T 3g5o_B 73 GTYRLLYRIDDE 84 (102)
T ss_dssp SSEEEEEEEETT
T ss_pred CCEEEEEEEeCC
Confidence 678888876554
No 10
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}
Probab=13.77 E-value=63 Score=22.06 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=16.1
Q ss_pred CCCCCccCCCceEEEEEecc
Q 032121 2 GEPIDLVKLDGTWRLQYTSA 21 (147)
Q Consensus 2 ~~~l~~~lL~G~WrLlYTTa 21 (147)
|.+.+++.+.|+|.|+|--+
T Consensus 16 G~~~~l~~~~gk~vll~F~~ 35 (171)
T 2rli_A 16 GRARCKADFRGQWVLMYFGF 35 (171)
T ss_dssp SCEEETTTTTTSEEEEEEEC
T ss_pred CCEEeHHHhCCCEEEEEEEc
Confidence 67788888999999997543
Done!