BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032122
(147 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2K07|A Chain A, Solution Nmr Structure Of Human E2-Like Ubiquitin-Fold
Modifier Conjugating Enzyme 1 (Ufc1). Northeast
Structural Genomics Consortium Target Hr41
Length = 175
Score = 192 bits (489), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 85/127 (66%), Positives = 105/127 (82%), Gaps = 1/127 (0%)
Query: 5 DPNTKSTLTQIPLLSTKAGPRDGAAWTQRLKEEYKALIAYTQMNKSNDNDWFRISAANPE 64
D T+ +++IP+L T AGPRD W QRLKEEY++LI Y + NK+ DNDWFR+ + N E
Sbjct: 3 DEATRRVVSEIPVLKTNAGPRDRELWVQRLKEEYQSLIRYVENNKNADNDWFRLES-NKE 61
Query: 65 GTRWTGKCWYVHNLLKYEFDLQFDIPVTYPATAPELELPQLDGKTQKMYRGGKICLTVHF 124
GTRW GKCWY+H+LLKYEFD++FDIP+TYP TAPE+ +P+LDGKT KMYRGGKICLT HF
Sbjct: 62 GTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPELDGKTAKMYRGGKICLTDHF 121
Query: 125 KPLWAKN 131
KPLWA+N
Sbjct: 122 KPLWARN 128
>pdb|2Z6O|A Chain A, Crystal Structure Of The Ufc1, Ufm1 Conjugating Enzyme 1
Length = 172
Score = 192 bits (488), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 85/127 (66%), Positives = 105/127 (82%), Gaps = 1/127 (0%)
Query: 5 DPNTKSTLTQIPLLSTKAGPRDGAAWTQRLKEEYKALIAYTQMNKSNDNDWFRISAANPE 64
D T+ +++IP+L T AGPRD W QRLKEEY++LI Y + NK+ DNDWFR+ + N E
Sbjct: 8 DEATRRVVSEIPVLKTNAGPRDRELWVQRLKEEYQSLIRYVENNKNADNDWFRLES-NKE 66
Query: 65 GTRWTGKCWYVHNLLKYEFDLQFDIPVTYPATAPELELPQLDGKTQKMYRGGKICLTVHF 124
GTRW GKCWY+H+LLKYEFD++FDIP+TYP TAPE+ +P+LDGKT KMYRGGKICLT HF
Sbjct: 67 GTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPELDGKTAKMYRGGKICLTDHF 126
Query: 125 KPLWAKN 131
KPLWA+N
Sbjct: 127 KPLWARN 133
>pdb|3EVX|A Chain A, Crystal Structure Of The Human E2-Like Ubiquitin-Fold
Modifier Conjugating Enzyme 1 (Ufc1). Northeast
Structural Genomics Consortium Target Hr41
pdb|3EVX|B Chain B, Crystal Structure Of The Human E2-Like Ubiquitin-Fold
Modifier Conjugating Enzyme 1 (Ufc1). Northeast
Structural Genomics Consortium Target Hr41
pdb|3EVX|C Chain C, Crystal Structure Of The Human E2-Like Ubiquitin-Fold
Modifier Conjugating Enzyme 1 (Ufc1). Northeast
Structural Genomics Consortium Target Hr41
pdb|3EVX|D Chain D, Crystal Structure Of The Human E2-Like Ubiquitin-Fold
Modifier Conjugating Enzyme 1 (Ufc1). Northeast
Structural Genomics Consortium Target Hr41
Length = 175
Score = 189 bits (481), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 84/127 (66%), Positives = 104/127 (81%), Gaps = 1/127 (0%)
Query: 5 DPNTKSTLTQIPLLSTKAGPRDGAAWTQRLKEEYKALIAYTQMNKSNDNDWFRISAANPE 64
D T+ +++IP+L T AGPRD W QRLKEEY++LI Y + NK+ DNDWFR+ + N E
Sbjct: 3 DEATRRVVSEIPVLKTNAGPRDRELWVQRLKEEYQSLIRYVENNKNADNDWFRLES-NKE 61
Query: 65 GTRWTGKCWYVHNLLKYEFDLQFDIPVTYPATAPELELPQLDGKTQKMYRGGKICLTVHF 124
GTRW GKCWY+H+LLKYEFD++FDIP+TYP TAPE+ +P+LDGKT K YRGGKICLT HF
Sbjct: 62 GTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPELDGKTAKXYRGGKICLTDHF 121
Query: 125 KPLWAKN 131
KPLWA+N
Sbjct: 122 KPLWARN 128
>pdb|2Z6P|A Chain A, Crystal Structure Of The Ufc1, Ufm1 Conjugating Enzyme 1
Length = 172
Score = 189 bits (481), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 84/127 (66%), Positives = 104/127 (81%), Gaps = 1/127 (0%)
Query: 5 DPNTKSTLTQIPLLSTKAGPRDGAAWTQRLKEEYKALIAYTQMNKSNDNDWFRISAANPE 64
D T+ +++IP+L T AGPRD W QRLKEEY++LI Y + NK+ DNDWFR+ + N E
Sbjct: 8 DEATRRVVSEIPVLKTNAGPRDRELWVQRLKEEYQSLIRYVENNKNADNDWFRLES-NKE 66
Query: 65 GTRWTGKCWYVHNLLKYEFDLQFDIPVTYPATAPELELPQLDGKTQKMYRGGKICLTVHF 124
GTRW GKCWY+H+LLKYEFD++FDIP+TYP TAPE+ +P+LDGKT K YRGGKICLT HF
Sbjct: 67 GTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPELDGKTAKXYRGGKICLTDHF 126
Query: 125 KPLWAKN 131
KPLWA+N
Sbjct: 127 KPLWARN 133
>pdb|3KPA|A Chain A, Ubiquitin Fold Modifier Conjugating Enzyme From Leishmania
Major (Probable)
pdb|3KPA|B Chain B, Ubiquitin Fold Modifier Conjugating Enzyme From Leishmania
Major (Probable)
pdb|3KPA|C Chain C, Ubiquitin Fold Modifier Conjugating Enzyme From Leishmania
Major (Probable)
Length = 168
Score = 166 bits (421), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 78/136 (57%), Positives = 99/136 (72%), Gaps = 2/136 (1%)
Query: 5 DPNTKSTLTQIPLLSTKAGPRDGAAWTQRLKEEYKALIAYTQMNKSNDNDWFRISAANPE 64
+P+ K ++++IPLL TKAGPRDG WT RLKEEY +LI Y + NK++D+ WF + + NP+
Sbjct: 10 EPSVKESVSRIPLLKTKAGPRDGDKWTARLKEEYASLITYVEHNKASDSHWFHLES-NPQ 68
Query: 65 GTRWTGKCWYVHNLLKYEFDLQFDIPVTYPATAPELELPQLDGKTQKMYRGGKICLTVHF 124
GTRW G CW + KYEF+ FDIPVTYP PE+ LP+L+GKT K YRGGKIC T HF
Sbjct: 69 GTRWYGTCWTYYKNEKYEFEXNFDIPVTYPQAPPEIALPELEGKTVKXYRGGKICXTTHF 128
Query: 125 KPLWAKNW-YFCFTFV 139
PLWA+N YF + V
Sbjct: 129 FPLWARNVPYFGISHV 144
>pdb|1TG7|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp.
pdb|1XC6|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp. In Complex With Galactose
Length = 971
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 24/57 (42%)
Query: 65 GTRWTGKCWYVHNLLKYEFDLQFDIPVTYPATAPELELPQLDGKTQKMYRGGKICLT 121
G+ + ++V Y + +T P +A L +PQL G R KI +T
Sbjct: 382 GSNSSASSFFVIRHSDYSSQASVEYKLTVPTSAGNLTIPQLGGSLTLSGRDSKIHVT 438
>pdb|1SPP|A Chain A, The Crystal Structures Of Two Members Of The
Spermadhesin Family Reveal The Folding Of The Cub
Domain
Length = 109
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 20 TKAGPRDGAAWTQRLKEEYKALIAYTQMNKSNDNDWFRISAANPEGTRWTGK 71
T GP+ WT ++ +YK L++ +N + ++ + P G++ GK
Sbjct: 19 TYKGPKTECVWTLQVDPKYKLLVSIPTLNLTCGKEYVEVLEGAP-GSKSLGK 69
>pdb|1Y79|1 Chain 1, Crystal Structure Of The E.Coli Dipeptidyl
Carboxypeptidase Dcp In Complex With A Peptidic
Inhibitor
Length = 680
Score = 26.6 bits (57), Expect = 6.1, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 22 AGPRDGAAWTQRLKEEYKALIAYTQMNKSNDNDWFRISAANPEGTRWTGKCWYVHNLLKY 81
A P D A + ++++ E ++++ +F ++ EG WT + L
Sbjct: 331 AQPWDWAFYAEQVRREK------FDLDEAQLKPYFELNTVLNEGVFWTA-----NQLFGI 379
Query: 82 EFDLQFDIPVTYP 94
+F +FDIPV +P
Sbjct: 380 KFVERFDIPVYHP 392
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.469
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,062,701
Number of Sequences: 62578
Number of extensions: 213016
Number of successful extensions: 410
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 395
Number of HSP's gapped (non-prelim): 12
length of query: 147
length of database: 14,973,337
effective HSP length: 90
effective length of query: 57
effective length of database: 9,341,317
effective search space: 532455069
effective search space used: 532455069
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)