Query 032122
Match_columns 147
No_of_seqs 80 out of 82
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 09:53:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032122.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032122hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08694 UFC1: Ubiquitin-fold 100.0 6E-78 1.3E-82 475.6 9.2 128 6-134 1-128 (161)
2 KOG3357 Uncharacterized conser 100.0 7.1E-77 1.5E-81 468.4 8.4 131 3-134 1-131 (167)
3 COG5078 Ubiquitin-protein liga 99.8 1.8E-18 3.8E-23 136.0 8.8 91 31-129 7-103 (153)
4 KOG0417 Ubiquitin-protein liga 99.7 8.8E-18 1.9E-22 132.5 6.8 91 32-130 4-99 (148)
5 PTZ00390 ubiquitin-conjugating 99.6 9.4E-16 2E-20 118.2 9.8 91 31-129 4-99 (152)
6 PLN00172 ubiquitin conjugating 99.6 1.3E-15 2.9E-20 116.4 9.7 91 31-129 3-98 (147)
7 PF00179 UQ_con: Ubiquitin-con 99.6 4.7E-15 1E-19 109.7 7.3 89 33-129 1-96 (140)
8 cd00195 UBCc Ubiquitin-conjuga 99.5 2.9E-14 6.2E-19 105.8 8.7 90 32-129 2-97 (141)
9 KOG0418 Ubiquitin-protein liga 99.4 4.4E-13 9.5E-18 110.2 6.3 94 31-128 5-103 (200)
10 smart00212 UBCc Ubiquitin-conj 99.3 9.1E-12 2E-16 92.9 8.3 90 32-129 1-97 (145)
11 KOG0422 Ubiquitin-protein liga 99.0 3.7E-10 8E-15 89.9 5.8 89 31-127 4-98 (153)
12 KOG0424 Ubiquitin-protein liga 99.0 1E-09 2.2E-14 87.8 7.9 90 31-128 6-107 (158)
13 KOG0419 Ubiquitin-protein liga 99.0 9.4E-10 2E-14 87.3 6.5 91 31-129 6-101 (152)
14 KOG0421 Ubiquitin-protein liga 99.0 9.5E-10 2.1E-14 88.6 6.3 96 26-129 26-126 (175)
15 KOG0426 Ubiquitin-protein liga 99.0 1.4E-09 3.1E-14 86.8 7.0 83 31-121 6-91 (165)
16 KOG0427 Ubiquitin conjugating 98.9 9.2E-09 2E-13 82.0 8.7 92 30-129 16-112 (161)
17 KOG0894 Ubiquitin-protein liga 98.5 3.6E-07 7.8E-12 77.3 7.7 88 30-129 6-103 (244)
18 KOG0416 Ubiquitin-protein liga 98.5 8.4E-08 1.8E-12 78.6 3.4 69 61-129 25-98 (189)
19 KOG0425 Ubiquitin-protein liga 98.4 6.9E-07 1.5E-11 72.5 7.1 80 34-121 10-92 (171)
20 KOG0428 Non-canonical ubiquiti 98.3 1.3E-06 2.9E-11 75.5 6.1 90 30-130 12-109 (314)
21 KOG0420 Ubiquitin-protein liga 97.6 3.4E-05 7.3E-10 63.4 2.6 54 78-132 73-129 (184)
22 KOG0895 Ubiquitin-conjugating 97.3 0.0006 1.3E-08 67.5 7.6 95 20-121 273-371 (1101)
23 PF14461 Prok-E2_B: Prokaryoti 97.0 0.0013 2.8E-08 49.4 4.8 54 79-133 34-89 (133)
24 KOG0423 Ubiquitin-protein liga 96.4 0.0034 7.3E-08 52.5 3.4 78 49-127 23-105 (223)
25 KOG0429 Ubiquitin-conjugating 96.3 0.023 5E-07 48.8 8.0 98 33-132 17-117 (258)
26 PF05773 RWD: RWD domain; Int 95.3 0.073 1.6E-06 36.6 5.9 65 31-103 3-71 (113)
27 KOG0895 Ubiquitin-conjugating 95.2 0.019 4.1E-07 57.3 3.7 83 29-121 851-939 (1101)
28 COG3449 DNA gyrase inhibitor [ 93.6 0.13 2.9E-06 41.3 4.7 67 30-107 21-90 (154)
29 KOG0896 Ubiquitin-conjugating 93.0 0.091 2E-06 41.9 2.9 45 63-107 36-82 (138)
30 smart00591 RWD domain in RING 92.5 0.14 3E-06 35.1 2.9 25 80-104 40-64 (107)
31 PF05743 UEV: UEV domain; Int 88.2 1.1 2.4E-05 33.6 4.8 63 63-126 25-99 (121)
32 PF14462 Prok-E2_E: Prokaryoti 57.0 9.3 0.0002 29.6 2.3 28 78-105 39-68 (122)
33 KOG0897 Predicted ubiquitin-co 52.4 8.4 0.00018 30.4 1.4 43 82-126 11-60 (122)
34 PF06113 BRE: Brain and reprod 42.1 27 0.00058 31.4 3.1 30 75-104 300-329 (333)
35 PF09765 WD-3: WD-repeat regio 32.0 35 0.00076 29.5 2.2 23 82-104 138-160 (291)
36 KOG4018 Uncharacterized conser 31.5 48 0.0011 28.3 2.9 23 82-104 50-72 (215)
37 COG4957 Predicted transcriptio 28.9 26 0.00056 28.5 0.8 46 53-102 74-123 (148)
38 PF00339 Arrestin_N: Arrestin 26.8 45 0.00099 23.4 1.7 19 80-101 94-112 (149)
39 PF09606 Med15: ARC105 or Med1 26.3 22 0.00048 35.2 0.0 87 16-102 641-735 (799)
40 cd03408 Band_7_5 A subgroup of 26.2 43 0.00092 25.6 1.6 32 106-137 21-54 (207)
41 PF08872 KGK: KGK domain; Int 26.1 1.6E+02 0.0034 22.5 4.6 21 64-92 75-96 (114)
42 PF14511 RE_EcoO109I: Type II 25.1 1E+02 0.0022 25.9 3.6 34 15-48 105-139 (200)
43 PF03920 TLE_N: Groucho/TLE N- 23.1 73 0.0016 25.5 2.4 19 30-48 24-42 (135)
44 COG2005 ModE N-terminal domain 21.7 1.1E+02 0.0025 24.0 3.2 48 8-55 54-106 (130)
45 PF01243 Pyridox_oxidase: Pyri 20.8 1.5E+02 0.0033 19.0 3.2 39 34-80 1-39 (89)
46 KOG3387 60S ribosomal protein 20.7 48 0.001 26.5 0.9 9 129-137 75-83 (131)
No 1
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=100.00 E-value=6e-78 Score=475.57 Aligned_cols=128 Identities=76% Similarity=1.329 Sum_probs=104.8
Q ss_pred chhhhhhcccceeeccCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCCCceEEeeCCCCCCeeeeeeeeeecccceeEEE
Q 032122 6 PNTKSTLTQIPLLSTKAGPRDGAAWTQRLKEEYKALIAYTQMNKSNDNDWFRISAANPEGTRWTGKCWYVHNLLKYEFDL 85 (147)
Q Consensus 6 ~~t~~~~~~ipl~~~~agprd~~~w~~RLkeEY~aLikyv~~nk~~d~dwf~Lep~n~dgTrW~gkcw~~~~~~~yeF~l 85 (147)
++||++|++||||+|+|||||+++|++||||||+|||+||++||++|||||+|+| |++||+|+|+|||+|++.+|||+|
T Consensus 1 ~~tk~t~~~IPll~~~AGPrd~~~W~~RLKEEy~aLI~Yv~~nK~~DndWF~les-n~~GT~W~GkCW~~h~l~kYEF~~ 79 (161)
T PF08694_consen 1 EATKSTVEKIPLLKTKAGPRDGDLWVQRLKEEYQALIKYVENNKENDNDWFRLES-NKEGTRWFGKCWYIHNLLKYEFDL 79 (161)
T ss_dssp -HHHHHHHCS---SS---TTSCHHHHHHHHHHHHHHHHHHHHHHHTT---EEEEE--TTSSEEEEEEEEEETTEEEEEEE
T ss_pred CchHHHHHhCccccccCCCCCHHHHHHHHHHHHHHHHHHHHhcccccCCeEEecc-CCCCCccccEEEEEeeeeeEEEee
Confidence 4799999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred EEecCCCCCCCCCeeecCCCCCcccccccCceeeecCCcccccccCCce
Q 032122 86 QFDIPVTYPATAPELELPQLDGKTQKMYRGGKICLTVHFKPLWAKNWYF 134 (147)
Q Consensus 86 efdIP~tYP~tpPeI~fPeldgkt~kmYrgGkICL~dHf~PlW~~n~p~ 134 (147)
|||||+|||+|||||++|||||||+|||||||||||+||+|||+||||-
T Consensus 80 eFdIP~tYP~t~pEi~lPeLdGKTaKMYRGGkIClt~HFkPLWakN~Pk 128 (161)
T PF08694_consen 80 EFDIPVTYPTTAPEIALPELDGKTAKMYRGGKICLTDHFKPLWAKNVPK 128 (161)
T ss_dssp EEE--TTTTTS----B-GGGTTT-SSBCCCCBB---TTHHHHHHCTTTT
T ss_pred ecCCCccCCCCCcceeccccCCchhhhhcCceEeeecccchhhhhcCCc
Confidence 9999999999999999999999999999999999999999999999994
No 2
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=7.1e-77 Score=468.40 Aligned_cols=131 Identities=76% Similarity=1.351 Sum_probs=129.7
Q ss_pred CCCchhhhhhcccceeeccCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCCCceEEeeCCCCCCeeeeeeeeeeccccee
Q 032122 3 GWDPNTKSTLTQIPLLSTKAGPRDGAAWTQRLKEEYKALIAYTQMNKSNDNDWFRISAANPEGTRWTGKCWYVHNLLKYE 82 (147)
Q Consensus 3 ~~d~~t~~~~~~ipl~~~~agprd~~~w~~RLkeEY~aLikyv~~nk~~d~dwf~Lep~n~dgTrW~gkcw~~~~~~~ye 82 (147)
|||++||++|+.||||+|+|||||+++|+|||||||++||+||+|||++|||||+||| |++||||+|||||+||+++||
T Consensus 1 ~~d~~tk~tl~~ipll~tkagprd~~~wvqrlkeey~sli~yvqnnk~~d~dwfrles-n~egtrwfgkcwy~hnllkye 79 (167)
T KOG3357|consen 1 MWDDATKSTLSRIPLLKTKAGPRDGDLWVQRLKEEYQSLIAYVQNNKSNDNDWFRLES-NKEGTRWFGKCWYVHNLLKYE 79 (167)
T ss_pred CCCchhhhHhhhCcceeccCCCccchHHHHHHHHHHHHHHHHHHhCcccCCcceEecc-CccccceehhhhHhhhhhhhe
Confidence 7999999999999999999999999999999999999999999999999999999998 999999999999999999999
Q ss_pred EEEEEecCCCCCCCCCeeecCCCCCcccccccCceeeecCCcccccccCCce
Q 032122 83 FDLQFDIPVTYPATAPELELPQLDGKTQKMYRGGKICLTVHFKPLWAKNWYF 134 (147)
Q Consensus 83 F~lefdIP~tYP~tpPeI~fPeldgkt~kmYrgGkICL~dHf~PlW~~n~p~ 134 (147)
|++|||||.|||+|+|||++|||||||+||||||||||++||+|||+||||-
T Consensus 80 fdvefdipityp~tapeialpeldgktakmyrggkiclt~hfkplwarn~pk 131 (167)
T KOG3357|consen 80 FDVEFDIPITYPTTAPEIALPELDGKTAKMYRGGKICLTDHFKPLWARNVPK 131 (167)
T ss_pred eeeeeccccccCCCCccccccccCchhhhhhcCceEeeccccchhhhhcCcc
Confidence 9999999999999999999999999999999999999999999999999993
No 3
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.8e-18 Score=136.03 Aligned_cols=91 Identities=18% Similarity=0.283 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCceEEeeCCC-CCCeeeeeeee--eecccceeEEEEEecCCCCCCCCCeeecCCCCC
Q 032122 31 TQRLKEEYKALIAYTQMNKSNDNDWFRISAANP-EGTRWTGKCWY--VHNLLKYEFDLQFDIPVTYPATAPELELPQLDG 107 (147)
Q Consensus 31 ~~RLkeEY~aLikyv~~nk~~d~dwf~Lep~n~-dgTrW~gkcw~--~~~~~~yeF~lefdIP~tYP~tpPeI~fPeldg 107 (147)
.+||++||+.|.+ +...-|+..|+++ +.+.|++.+-| .++|++-.|.+.+++|..||..||.|+|-.-..
T Consensus 7 ~~RL~kE~~~l~~-------~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~ 79 (153)
T COG5078 7 LKRLLKELKKLQK-------DPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIF 79 (153)
T ss_pred HHHHHHHHHHHhc-------CCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCc
Confidence 5799999999886 5578899999887 99999999999 999999999999999999999999999999988
Q ss_pred cccccccCceeeec---CCcccccc
Q 032122 108 KTQKMYRGGKICLT---VHFKPLWA 129 (147)
Q Consensus 108 kt~kmYrgGkICL~---dHf~PlW~ 129 (147)
|+|+. .+|+|||+ ++|+|+|+
T Consensus 80 HPNV~-~~G~vCLdIL~~~WsP~~~ 103 (153)
T COG5078 80 HPNVD-PSGNVCLDILKDRWSPVYT 103 (153)
T ss_pred CCCcC-CCCCChhHHHhCCCCcccc
Confidence 99999 99999997 99999996
No 4
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=8.8e-18 Score=132.54 Aligned_cols=91 Identities=16% Similarity=0.242 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCceEEeeCCCCCCeeeeeeee--eecccceeEEEEEecCCCCCCCCCeeecCCCCCcc
Q 032122 32 QRLKEEYKALIAYTQMNKSNDNDWFRISAANPEGTRWTGKCWY--VHNLLKYEFDLQFDIPVTYPATAPELELPQLDGKT 109 (147)
Q Consensus 32 ~RLkeEY~aLikyv~~nk~~d~dwf~Lep~n~dgTrW~gkcw~--~~~~~~yeF~lefdIP~tYP~tpPeI~fPeldgkt 109 (147)
+||.+||+.|.+ .+-.-.+..|+.++...|++.+-| ++||++..|.|+|.+|..||+.||.|+|-.-.-|+
T Consensus 4 ~RI~kE~~~l~~-------dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHP 76 (148)
T KOG0417|consen 4 KRIIKELQDLLR-------DPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHP 76 (148)
T ss_pred HHHHHHHHHHhc-------CCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccC
Confidence 499999997664 233344555767899999999999 99999999999999999999999999999887799
Q ss_pred cccccCceeeec---CCccccccc
Q 032122 110 QKMYRGGKICLT---VHFKPLWAK 130 (147)
Q Consensus 110 ~kmYrgGkICL~---dHf~PlW~~ 130 (147)
|+. +.|+|||| ++|+|+|+=
T Consensus 77 NI~-~~G~IclDILk~~WsPAl~i 99 (148)
T KOG0417|consen 77 NID-SNGRICLDILKDQWSPALTI 99 (148)
T ss_pred CcC-ccccchHHhhhccCChhhHH
Confidence 999 99999999 999999973
No 5
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=99.65 E-value=9.4e-16 Score=118.21 Aligned_cols=91 Identities=14% Similarity=0.180 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCceEEeeCCCCCCeeeeeeee--eecccceeEEEEEecCCCCCCCCCeeecCCCCCc
Q 032122 31 TQRLKEEYKALIAYTQMNKSNDNDWFRISAANPEGTRWTGKCWY--VHNLLKYEFDLQFDIPVTYPATAPELELPQLDGK 108 (147)
Q Consensus 31 ~~RLkeEY~aLikyv~~nk~~d~dwf~Lep~n~dgTrW~gkcw~--~~~~~~yeF~lefdIP~tYP~tpPeI~fPeldgk 108 (147)
.+||.+|++.|.+ +..+.+.+.|+++|...|.+.+-| +++|++..|.+.+.+|.+||..||.|.|.....|
T Consensus 4 ~kRl~~E~~~l~~-------~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~H 76 (152)
T PTZ00390 4 SKRIEKETQNLAN-------DPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYH 76 (152)
T ss_pred HHHHHHHHHHHHh-------CCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCee
Confidence 4799999999875 234568888877999999999998 8999999999999999999999999999887779
Q ss_pred ccccccCceeeec---CCcccccc
Q 032122 109 TQKMYRGGKICLT---VHFKPLWA 129 (147)
Q Consensus 109 t~kmYrgGkICL~---dHf~PlW~ 129 (147)
+|+- .+|+|||+ +.|+|.|+
T Consensus 77 PNV~-~~G~iCl~iL~~~W~p~~t 99 (152)
T PTZ00390 77 PNID-KLGRICLDILKDKWSPALQ 99 (152)
T ss_pred ceEC-CCCeEECccCcccCCCCCc
Confidence 9984 78999998 77999885
No 6
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=99.64 E-value=1.3e-15 Score=116.44 Aligned_cols=91 Identities=21% Similarity=0.300 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCceEEeeCCCCCCeeeeeeee--eecccceeEEEEEecCCCCCCCCCeeecCCCCCc
Q 032122 31 TQRLKEEYKALIAYTQMNKSNDNDWFRISAANPEGTRWTGKCWY--VHNLLKYEFDLQFDIPVTYPATAPELELPQLDGK 108 (147)
Q Consensus 31 ~~RLkeEY~aLikyv~~nk~~d~dwf~Lep~n~dgTrW~gkcw~--~~~~~~yeF~lefdIP~tYP~tpPeI~fPeldgk 108 (147)
.+||.+||+.|.+ +....+.+.|.+++.+.|.+.+-| .++|++..|.+.|.+|..||..||.|+|-..-.|
T Consensus 3 ~~Rl~kE~~~l~~-------~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H 75 (147)
T PLN00172 3 TKRIQKEHKDLLK-------DPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYH 75 (147)
T ss_pred HHHHHHHHHHHHh-------CCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCccc
Confidence 3799999999987 223457888877999999999998 8999999999999999999999999999877779
Q ss_pred ccccccCceeeec---CCcccccc
Q 032122 109 TQKMYRGGKICLT---VHFKPLWA 129 (147)
Q Consensus 109 t~kmYrgGkICL~---dHf~PlW~ 129 (147)
+|+. .+|+|||+ +.|+|.|+
T Consensus 76 PNv~-~~G~iCl~il~~~W~p~~t 98 (147)
T PLN00172 76 PNIN-SNGSICLDILRDQWSPALT 98 (147)
T ss_pred ceEC-CCCEEEcccCcCCCCCcCc
Confidence 9975 69999998 78999985
No 7
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=99.58 E-value=4.7e-15 Score=109.66 Aligned_cols=89 Identities=19% Similarity=0.313 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCceEEeeCCC-CCCeeeeeeee--eecccceeEEEEEecCCCCCCCCCeeecCCCCCcc
Q 032122 33 RLKEEYKALIAYTQMNKSNDNDWFRISAANP-EGTRWTGKCWY--VHNLLKYEFDLQFDIPVTYPATAPELELPQLDGKT 109 (147)
Q Consensus 33 RLkeEY~aLikyv~~nk~~d~dwf~Lep~n~-dgTrW~gkcw~--~~~~~~yeF~lefdIP~tYP~tpPeI~fPeldgkt 109 (147)
||.+||+.|.+ +....+.+.+.++ +...|.+.+-| +++|++..|.+++.+|..||.+||.|.|-....|+
T Consensus 1 Rl~~E~~~l~~-------~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HP 73 (140)
T PF00179_consen 1 RLQKELKELQK-------NPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHP 73 (140)
T ss_dssp HHHHHHHHHHH-------SHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBT
T ss_pred CHHHHHHHHhh-------CCCCCEEEEECCCCChheEEEEEeccCccceecccccccccccccccccccccccccccccc
Confidence 89999998776 3457787777564 89999999998 99999999999999999999999999998877799
Q ss_pred cccccCceeeec----CCcccccc
Q 032122 110 QKMYRGGKICLT----VHFKPLWA 129 (147)
Q Consensus 110 ~kmYrgGkICL~----dHf~PlW~ 129 (147)
|+. .+|+|||+ ++|+|.+.
T Consensus 74 ni~-~~G~icl~~l~~~~W~p~~~ 96 (140)
T PF00179_consen 74 NID-ENGRICLDILNPESWSPSYT 96 (140)
T ss_dssp TB--TTSBBGHGGGTTTTC-TTSH
T ss_pred ccc-ccccchhhhhhcccCCcccc
Confidence 999 99999996 46998764
No 8
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=99.54 E-value=2.9e-14 Score=105.83 Aligned_cols=90 Identities=22% Similarity=0.358 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCceEEeeCCCCCCeeeeeeee--eecccceeEEEEEecCCCCCCCCCeeecCCCCCcc
Q 032122 32 QRLKEEYKALIAYTQMNKSNDNDWFRISAANPEGTRWTGKCWY--VHNLLKYEFDLQFDIPVTYPATAPELELPQLDGKT 109 (147)
Q Consensus 32 ~RLkeEY~aLikyv~~nk~~d~dwf~Lep~n~dgTrW~gkcw~--~~~~~~yeF~lefdIP~tYP~tpPeI~fPeldgkt 109 (147)
+||.+||+.|.+.. ...|++.+.+.+.++|.+.+.+ .++|.+..|.+++.+|..||.+||.|+|...--|+
T Consensus 2 ~Rl~~E~~~l~~~~-------~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~Hp 74 (141)
T cd00195 2 KRLQKELKDLKKDP-------PSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHP 74 (141)
T ss_pred chHHHHHHHHHhCC-------CCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccC
Confidence 69999999987522 2557888867899999999998 89999999999999999999999999997666699
Q ss_pred cccccCceeeec---CC-cccccc
Q 032122 110 QKMYRGGKICLT---VH-FKPLWA 129 (147)
Q Consensus 110 ~kmYrgGkICL~---dH-f~PlW~ 129 (147)
++- .+|+|||+ .+ |+|.++
T Consensus 75 nV~-~~G~icl~~l~~~~W~p~~~ 97 (141)
T cd00195 75 NVD-ENGKICLSILKTHGWSPAYT 97 (141)
T ss_pred CCC-CCCCCchhhcCCCCcCCcCc
Confidence 998 99999998 45 888764
No 9
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=4.4e-13 Score=110.18 Aligned_cols=94 Identities=17% Similarity=0.216 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCceEEeeCCCCCCeeeeeeee--eecccceeEEEEEecCCCCCCCCCeeecCCCCCc
Q 032122 31 TQRLKEEYKALIAYTQMNKSNDNDWFRISAANPEGTRWTGKCWY--VHNLLKYEFDLQFDIPVTYPATAPELELPQLDGK 108 (147)
Q Consensus 31 ~~RLkeEY~aLikyv~~nk~~d~dwf~Lep~n~dgTrW~gkcw~--~~~~~~yeF~lefdIP~tYP~tpPeI~fPeldgk 108 (147)
.+|+++|.+.+.+ +.+--..-+.++.+|.+.++=.|.+-| ++||++..|.|.|+||.+||..||++.|-.-.-|
T Consensus 5 ~~ri~~e~k~v~~----~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwH 80 (200)
T KOG0418|consen 5 FKRINREQKEVLD----DPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWH 80 (200)
T ss_pred HHHHHHHHHHhcc----ChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeec
Confidence 5799999887543 322225678999999999999999999 9999999999999999999999999999877779
Q ss_pred ccccccCceeeec---CCccccc
Q 032122 109 TQKMYRGGKICLT---VHFKPLW 128 (147)
Q Consensus 109 t~kmYrgGkICL~---dHf~PlW 128 (147)
+|+--.+|.|||| +||+|.-
T Consensus 81 PnVSs~tGaICLDilkd~Wa~sl 103 (200)
T KOG0418|consen 81 PNVSSQTGAICLDILKDQWAASL 103 (200)
T ss_pred CCCCcccccchhhhhhcccchhh
Confidence 9999999999997 9999863
No 10
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=99.31 E-value=9.1e-12 Score=92.86 Aligned_cols=90 Identities=21% Similarity=0.288 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCceEEeeCC-CCCCeeeeeeee--eecccceeEEEEEecCCCCCCCCCeeecCCCCCc
Q 032122 32 QRLKEEYKALIAYTQMNKSNDNDWFRISAAN-PEGTRWTGKCWY--VHNLLKYEFDLQFDIPVTYPATAPELELPQLDGK 108 (147)
Q Consensus 32 ~RLkeEY~aLikyv~~nk~~d~dwf~Lep~n-~dgTrW~gkcw~--~~~~~~yeF~lefdIP~tYP~tpPeI~fPeldgk 108 (147)
+||.+|++.|.+-. ..-|.+.++. ++...|.+..-| .++|.+..|.+.+.+|..||.+||.|.|-..-.|
T Consensus 1 ~Rl~~E~~~~~~~~-------~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~H 73 (145)
T smart00212 1 KRLLKELKELLKDP-------PPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYH 73 (145)
T ss_pred ChHHHHHHHHHhCC-------CCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceE
Confidence 49999999987632 2346555544 489999999987 8999999999999999999999999999766569
Q ss_pred ccccccCceeeec----CCcccccc
Q 032122 109 TQKMYRGGKICLT----VHFKPLWA 129 (147)
Q Consensus 109 t~kmYrgGkICL~----dHf~PlW~ 129 (147)
+++. .+|+|||+ ++|+|.++
T Consensus 74 p~i~-~~G~icl~~l~~~~W~p~~~ 97 (145)
T smart00212 74 PNVD-SSGEICLDILKQEKWSPATT 97 (145)
T ss_pred eeEC-CCCCEehhhcCCCCCCCCCc
Confidence 9986 59999997 57888753
No 11
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=3.7e-10 Score=89.90 Aligned_cols=89 Identities=28% Similarity=0.489 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCce-EEeeCCCCCCeeeeeeee-eecccceeEEEEEecCCCCCCCCCeeecCCCCCc
Q 032122 31 TQRLKEEYKALIAYTQMNKSNDNDWF-RISAANPEGTRWTGKCWY-VHNLLKYEFDLQFDIPVTYPATAPELELPQLDGK 108 (147)
Q Consensus 31 ~~RLkeEY~aLikyv~~nk~~d~dwf-~Lep~n~dgTrW~gkcw~-~~~~~~yeF~lefdIP~tYP~tpPeI~fPeldgk 108 (147)
.+||.+|..-|.+ ||.. .| .|++.+...-+|+|.+-. .-||.+--|+|+|+.|+.||--||.|.|-...-|
T Consensus 4 ~~Rl~kEL~dl~~----~~~~---~~rn~~~~e~nll~wt~llipd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYH 76 (153)
T KOG0422|consen 4 PRRLRKELADLQK----NKMK---FFRNIEVDEANLLKWTGLLIPDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYH 76 (153)
T ss_pred hHHHHHHHHHHHh----ccHH---HHhhhhcccccceeEEeEecCCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeecc
Confidence 3699999988776 4332 45 566656889999999988 7899999999999999999999999999876669
Q ss_pred ccccccCceeeec----CCcccc
Q 032122 109 TQKMYRGGKICLT----VHFKPL 127 (147)
Q Consensus 109 t~kmYrgGkICL~----dHf~Pl 127 (147)
+|+.=+ |++||- +||+|.
T Consensus 77 pNVDe~-gqvClPiis~EnWkP~ 98 (153)
T KOG0422|consen 77 PNVDEK-GQVCLPIISAENWKPA 98 (153)
T ss_pred CCCCCC-CceeeeeeecccccCc
Confidence 999888 999995 999995
No 12
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1e-09 Score=87.79 Aligned_cols=90 Identities=19% Similarity=0.234 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCceEEeeCC-----CCCCeeeeeeee--eecccceeEEEEEecCCCCCCCCCeeecC
Q 032122 31 TQRLKEEYKALIAYTQMNKSNDNDWFRISAAN-----PEGTRWTGKCWY--VHNLLKYEFDLQFDIPVTYPATAPELELP 103 (147)
Q Consensus 31 ~~RLkeEY~aLikyv~~nk~~d~dwf~Lep~n-----~dgTrW~gkcw~--~~~~~~yeF~lefdIP~tYP~tpPeI~fP 103 (147)
.+||+||=++++|- -.--|.-.|+- .++.+|++.+=| ++++++-.|.|..+.|..||.+||.++|+
T Consensus 6 ~~rl~eErk~wrk~-------hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~ 78 (158)
T KOG0424|consen 6 LNRLAEERKKWRKD-------HPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFK 78 (158)
T ss_pred HHHHHHHHHHHhhc-------CCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccC
Confidence 68999999998872 22223222221 223455555555 55555569999999999999999999997
Q ss_pred CCCCcccccccCceeeec----CC-ccccc
Q 032122 104 QLDGKTQKMYRGGKICLT----VH-FKPLW 128 (147)
Q Consensus 104 eldgkt~kmYrgGkICL~----dH-f~PlW 128 (147)
.--.|+|| |-.|.|||+ +| |+|.-
T Consensus 79 ~pl~HPNV-ypsgtVcLsiL~e~~~W~pai 107 (158)
T KOG0424|consen 79 PPLFHPNV-YPSGTVCLSILNEEKDWRPAI 107 (158)
T ss_pred CCCcCCCc-CCCCcEehhhhccccCCCchh
Confidence 76668886 778999997 55 99964
No 13
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=9.4e-10 Score=87.31 Aligned_cols=91 Identities=18% Similarity=0.343 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCceEEeeCCCCCCeeeeeeee--eecccceeEEEEEecCCCCCCCCCeeecCCCCCc
Q 032122 31 TQRLKEEYKALIAYTQMNKSNDNDWFRISAANPEGTRWTGKCWY--VHNLLKYEFDLQFDIPVTYPATAPELELPQLDGK 108 (147)
Q Consensus 31 ~~RLkeEY~aLikyv~~nk~~d~dwf~Lep~n~dgTrW~gkcw~--~~~~~~yeF~lefdIP~tYP~tpPeI~fPeldgk 108 (147)
..||.+.++.|++ +..--++-+|+..+.-.|.+.+-| .+|+++-.|+|.++.+++||..||-++|-....|
T Consensus 6 rrrLmrDfkrlqe-------dpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFH 78 (152)
T KOG0419|consen 6 RRRLMRDFKRLQE-------DPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFH 78 (152)
T ss_pred HHHHHHHHHHhhc-------CCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccC
Confidence 3578888877664 556777888888999999999999 9999999999999999999999999999998889
Q ss_pred ccccccCceeeec---CCcccccc
Q 032122 109 TQKMYRGGKICLT---VHFKPLWA 129 (147)
Q Consensus 109 t~kmYrgGkICL~---dHf~PlW~ 129 (147)
+|+ |..|+|||| ..|+|.++
T Consensus 79 PNv-ya~G~iClDiLqNrWsp~Yd 101 (152)
T KOG0419|consen 79 PNV-YADGSICLDILQNRWSPTYD 101 (152)
T ss_pred CCc-CCCCcchHHHHhcCCCCchh
Confidence 987 666999998 78999875
No 14
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=9.5e-10 Score=88.59 Aligned_cols=96 Identities=19% Similarity=0.325 Sum_probs=81.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhcCCCCCCceEEeeCCCCCCeeeeeeee--eecccceeEEEEEecCCCCCCCCCeeecC
Q 032122 26 DGAAWTQRLKEEYKALIAYTQMNKSNDNDWFRISAANPEGTRWTGKCWY--VHNLLKYEFDLQFDIPVTYPATAPELELP 103 (147)
Q Consensus 26 d~~~w~~RLkeEY~aLikyv~~nk~~d~dwf~Lep~n~dgTrW~gkcw~--~~~~~~yeF~lefdIP~tYP~tpPeI~fP 103 (147)
|+..=.+||..|.+.|.- ++..-|+--|.++++++|.|.+=| ++.|++-+|+|.++.|..||-.||.|+|-
T Consensus 26 ~~~~V~KRLq~ELm~Lmm-------s~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFl 98 (175)
T KOG0421|consen 26 DGHSVTKRLQSELMGLMM-------SNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFL 98 (175)
T ss_pred cCchHHHHHHHHHHHHHh-------cCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEee
Confidence 455567899999999875 555666555766899999999999 99999999999999999999999999997
Q ss_pred CCCCcccccccCceeeec---CCcccccc
Q 032122 104 QLDGKTQKMYRGGKICLT---VHFKPLWA 129 (147)
Q Consensus 104 eldgkt~kmYrgGkICL~---dHf~PlW~ 129 (147)
.--.|+|+.- -|.|||| |.|+-+++
T Consensus 99 tpc~HPNVD~-~GnIcLDILkdKWSa~Yd 126 (175)
T KOG0421|consen 99 TPCFHPNVDL-SGNICLDILKDKWSAVYD 126 (175)
T ss_pred ccccCCCccc-cccchHHHHHHHHHHHHh
Confidence 6666888875 4789998 99998875
No 15
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1.4e-09 Score=86.79 Aligned_cols=83 Identities=20% Similarity=0.342 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCceEEeeCC-CCCCeeeeeeee--eecccceeEEEEEecCCCCCCCCCeeecCCCCC
Q 032122 31 TQRLKEEYKALIAYTQMNKSNDNDWFRISAAN-PEGTRWTGKCWY--VHNLLKYEFDLQFDIPVTYPATAPELELPQLDG 107 (147)
Q Consensus 31 ~~RLkeEY~aLikyv~~nk~~d~dwf~Lep~n-~dgTrW~gkcw~--~~~~~~yeF~lefdIP~tYP~tpPeI~fPeldg 107 (147)
..||.+||+.|++ +..+-+.-.|+| ++-..|++-+.| +++|++-.|--.+..|..||.+||.++|.--..
T Consensus 6 lkRLm~EykqLt~-------~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~f 78 (165)
T KOG0426|consen 6 LKRLMAEYKQLTL-------NPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMF 78 (165)
T ss_pred HHHHHHHHHHHcc-------CCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccc
Confidence 5799999999987 567788777877 677899999999 999999999999999999999999999975555
Q ss_pred cccccccCceeeec
Q 032122 108 KTQKMYRGGKICLT 121 (147)
Q Consensus 108 kt~kmYrgGkICL~ 121 (147)
|+| .|..|++|..
T Consensus 79 HPN-iy~dG~VCIS 91 (165)
T KOG0426|consen 79 HPN-IYPDGRVCIS 91 (165)
T ss_pred cCc-ccCCCeEEEE
Confidence 877 4999999985
No 16
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=9.2e-09 Score=82.01 Aligned_cols=92 Identities=21% Similarity=0.335 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCceEEeeCCCCCCeeeeeeee--eecccceeEEEEEecCCCCCCCCCeeecCCCCC
Q 032122 30 WTQRLKEEYKALIAYTQMNKSNDNDWFRISAANPEGTRWTGKCWY--VHNLLKYEFDLQFDIPVTYPATAPELELPQLDG 107 (147)
Q Consensus 30 w~~RLkeEY~aLikyv~~nk~~d~dwf~Lep~n~dgTrW~gkcw~--~~~~~~yeF~lefdIP~tYP~tpPeI~fPeldg 107 (147)
=..||.+|+.+++. +-..-|++. +.+++++|.-.-=| ++=|.+=.|.|+|+.|..||+..|++-|---.-
T Consensus 16 at~RLqKEl~e~q~-------~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P 87 (161)
T KOG0427|consen 16 ATNRLQKELSEWQN-------NPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAP 87 (161)
T ss_pred HHHHHHHHHHHHhc-------CCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCC
Confidence 47899999998763 334556554 35678888755555 677777799999999999999999999943322
Q ss_pred cccccccCceeeec---CCcccccc
Q 032122 108 KTQKMYRGGKICLT---VHFKPLWA 129 (147)
Q Consensus 108 kt~kmYrgGkICL~---dHf~PlW~ 129 (147)
-..-.|.+|-|||+ |.|+|+-.
T Consensus 88 ~HPHiYSNGHICL~iL~d~WsPAms 112 (161)
T KOG0427|consen 88 LHPHIYSNGHICLDILYDSWSPAMS 112 (161)
T ss_pred CCCceecCCeEEEEeecccCCcchh
Confidence 22347999999998 99999864
No 17
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=3.6e-07 Score=77.28 Aligned_cols=88 Identities=20% Similarity=0.375 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCceEEeeCCCCCCeeeeeeee--eecccceeEEEEEecCCCCCCCCCeeecCCCCC
Q 032122 30 WTQRLKEEYKALIAYTQMNKSNDNDWFRISAANPEGTRWTGKCWY--VHNLLKYEFDLQFDIPVTYPATAPELELPQLDG 107 (147)
Q Consensus 30 w~~RLkeEY~aLikyv~~nk~~d~dwf~Lep~n~dgTrW~gkcw~--~~~~~~yeF~lefdIP~tYP~tpPeI~fPeldg 107 (147)
=++||.+||++|.| +--+.+.-.|.-.+--.|.=..-| ++||.+--+-=-+..|..||-.||-|..=.-.|
T Consensus 6 a~kRl~keY~~l~k-------~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNG 78 (244)
T KOG0894|consen 6 AVKRLQKEYRALCK-------DPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNG 78 (244)
T ss_pred HHHHHHHHHHHHHh-------CCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCC
Confidence 47999999999987 334555555533666777777777 788888788888899999999999999855556
Q ss_pred --cccccccCceeeec------CCcccccc
Q 032122 108 --KTQKMYRGGKICLT------VHFKPLWA 129 (147)
Q Consensus 108 --kt~kmYrgGkICL~------dHf~PlW~ 129 (147)
+||+ +|||. |.|.|.|+
T Consensus 79 RFktnt-----RLCLSiSDfHPdsWNP~Ws 103 (244)
T KOG0894|consen 79 RFKTNT-----RLCLSISDFHPDSWNPGWS 103 (244)
T ss_pred ceecCc-----eEEEeccccCcCcCCCccc
Confidence 7765 89996 89999996
No 18
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=8.4e-08 Score=78.64 Aligned_cols=69 Identities=16% Similarity=0.237 Sum_probs=59.2
Q ss_pred CCCCCCeeeeeeee--eecccceeEEEEEecCCCCCCCCCeeecCCCCCcccccccCceeeec---CCcccccc
Q 032122 61 ANPEGTRWTGKCWY--VHNLLKYEFDLQFDIPVTYPATAPELELPQLDGKTQKMYRGGKICLT---VHFKPLWA 129 (147)
Q Consensus 61 ~n~dgTrW~gkcw~--~~~~~~yeF~lefdIP~tYP~tpPeI~fPeldgkt~kmYrgGkICL~---dHf~PlW~ 129 (147)
+|+..+...-++-| +++|++-.|+|++++|..||-..|.|.|-.-..|+|+-...|.|||| ..|+|+++
T Consensus 25 ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~SGsVCLDViNQtWSp~yD 98 (189)
T KOG0416|consen 25 INDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEASGSVCLDVINQTWSPLYD 98 (189)
T ss_pred ecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhccCccHHHHHhhhhhHHHH
Confidence 34556665555555 77788889999999999999999999999988899999999999998 89999975
No 19
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=6.9e-07 Score=72.47 Aligned_cols=80 Identities=16% Similarity=0.294 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCCceEEeeCC-CCCCeeeeeeee--eecccceeEEEEEecCCCCCCCCCeeecCCCCCccc
Q 032122 34 LKEEYKALIAYTQMNKSNDNDWFRISAAN-PEGTRWTGKCWY--VHNLLKYEFDLQFDIPVTYPATAPELELPQLDGKTQ 110 (147)
Q Consensus 34 LkeEY~aLikyv~~nk~~d~dwf~Lep~n-~dgTrW~gkcw~--~~~~~~yeF~lefdIP~tYP~tpPeI~fPeldgkt~ 110 (147)
|.++|+.|.+ .-.+-|+...++ .|.-.|+=.+-| .+-|++-=|+-....|..||.+||.++|-.=.-|+|
T Consensus 10 l~~qlk~L~~-------~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPN 82 (171)
T KOG0425|consen 10 LLKQLKELQE-------EPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPN 82 (171)
T ss_pred HHHHHHHHhc-------CCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCC
Confidence 4556666554 347888777766 699999987777 999999999999999999999999999976555887
Q ss_pred ccccCceeeec
Q 032122 111 KMYRGGKICLT 121 (147)
Q Consensus 111 kmYrgGkICL~ 121 (147)
+ |++|++|..
T Consensus 83 v-y~~G~vCIS 92 (171)
T KOG0425|consen 83 V-YEDGDVCIS 92 (171)
T ss_pred c-CCCCCEEEE
Confidence 5 899999984
No 20
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=1.3e-06 Score=75.54 Aligned_cols=90 Identities=20% Similarity=0.351 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCceEEeeCCCCCCeeeeeeee--eecccceeEEEEEecCCCCCCCCCeeecCCCCC
Q 032122 30 WTQRLKEEYKALIAYTQMNKSNDNDWFRISAANPEGTRWTGKCWY--VHNLLKYEFDLQFDIPVTYPATAPELELPQLDG 107 (147)
Q Consensus 30 w~~RLkeEY~aLikyv~~nk~~d~dwf~Lep~n~dgTrW~gkcw~--~~~~~~yeF~lefdIP~tYP~tpPeI~fPeldg 107 (147)
=++||.+|-+.|. +-+|-+.-.|..+++..|.=.+.| ++++++--+-=+|.+|+.||+-||.|-+=.-.|
T Consensus 12 aVkRlmkEa~El~--------~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpNG 83 (314)
T KOG0428|consen 12 AVKRLMKEAAELK--------DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPNG 83 (314)
T ss_pred HHHHHHHHHHHhc--------CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCCC
Confidence 4789998887764 234555444667899999999998 999999999999999999999999998855555
Q ss_pred cccccccCceeeec------CCccccccc
Q 032122 108 KTQKMYRGGKICLT------VHFKPLWAK 130 (147)
Q Consensus 108 kt~kmYrgGkICL~------dHf~PlW~~ 130 (147)
.-. -+-||||. +||-|-|+-
T Consensus 84 RFE---~nkKiCLSISgyHPEtWqPSWSi 109 (314)
T KOG0428|consen 84 RFE---VNKKICLSISGYHPETWQPSWSI 109 (314)
T ss_pred cee---eCceEEEEecCCCccccCcchhH
Confidence 211 14489997 999999973
No 21
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=3.4e-05 Score=63.41 Aligned_cols=54 Identities=20% Similarity=0.431 Sum_probs=41.2
Q ss_pred ccceeEEEEEecCCCCCCCCCeeecCCCCCcccccccCceeeec---CCcccccccCC
Q 032122 78 LLKYEFDLQFDIPVTYPATAPELELPQLDGKTQKMYRGGKICLT---VHFKPLWAKNW 132 (147)
Q Consensus 78 ~~~yeF~lefdIP~tYP~tpPeI~fPeldgkt~kmYrgGkICL~---dHf~PlW~~n~ 132 (147)
|.+-.|.++|+||..||..||.+.=-.---|+|+.- .|.|||+ +||+|.-+=|.
T Consensus 73 Y~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPNId~-~GnVCLnILRedW~P~lnL~s 129 (184)
T KOG0420|consen 73 YQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPNIDL-DGNVCLNILREDWRPVLNLNS 129 (184)
T ss_pred ecCceEEEEEECCCCCCCCCCeeeeeeccccCCcCC-cchHHHHHHHhcCccccchHH
Confidence 334468889999999999999997633333666554 6899998 89999876553
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.0006 Score=67.50 Aligned_cols=95 Identities=18% Similarity=0.270 Sum_probs=68.2
Q ss_pred ccCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCCCceEEeeCCCCCCeeeeeeee--eecccceeEEEEEecCCCCCCCC
Q 032122 20 TKAGPRDGAAWTQRLKEEYKALIAYTQMNKSNDNDWFRISAANPEGTRWTGKCWY--VHNLLKYEFDLQFDIPVTYPATA 97 (147)
Q Consensus 20 ~~agprd~~~w~~RLkeEY~aLikyv~~nk~~d~dwf~Lep~n~dgTrW~gkcw~--~~~~~~yeF~lefdIP~tYP~tp 97 (147)
.++++.-...|.+|+++|.+.|=+-+ ...+...|-....+.=...+=+ ++||..--|.++|.-|.+||..|
T Consensus 273 ~~~~k~hs~~~skrv~ke~~llskdl-------pEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~p 345 (1101)
T KOG0895|consen 273 GKSSKPHSKNWSKKVAKELKLLSKDL-------PEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVP 345 (1101)
T ss_pred CCCCCccchhhHHHHHHHhhhhcccC-------CCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCC
Confidence 34566666889999999999865422 1223333323455555566555 67777778999999999999999
Q ss_pred CeeecCCC-CCcc-cccccCceeeec
Q 032122 98 PELELPQL-DGKT-QKMYRGGKICLT 121 (147)
Q Consensus 98 PeI~fPel-dgkt-~kmYrgGkICL~ 121 (147)
|.+.+-.. ..+. .--|+.|||||.
T Consensus 346 p~v~~lt~~~~R~nPNlYn~GKVcLs 371 (1101)
T KOG0895|consen 346 PHVKYLTGGGVRLNPNLYNDGKVCLS 371 (1101)
T ss_pred ceeEEeeccceeecCCcccCceEEee
Confidence 99999766 4433 456999999997
No 23
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=97.00 E-value=0.0013 Score=49.36 Aligned_cols=54 Identities=19% Similarity=0.200 Sum_probs=41.7
Q ss_pred cceeEEEEEecCCCCCCCCCeeecCCCCC--cccccccCceeeecCCcccccccCCc
Q 032122 79 LKYEFDLQFDIPVTYPATAPELELPQLDG--KTQKMYRGGKICLTVHFKPLWAKNWY 133 (147)
Q Consensus 79 ~~yeF~lefdIP~tYP~tpPeI~fPeldg--kt~kmYrgGkICL~dHf~PlW~~n~p 133 (147)
.+.+|.|.+.+|..||..||.|.+.+... .-.-.+.+|+|||-+. .=.|+.+-|
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~-~~~~D~~~P 89 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDE-ELVLDPWDP 89 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecC-CcccCccCH
Confidence 67799999999999999999999976553 2333455999999755 656666555
No 24
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.0034 Score=52.51 Aligned_cols=78 Identities=12% Similarity=0.155 Sum_probs=61.7
Q ss_pred CCCCCCceEEeeCCCCCCeeeeeeee--eecccceeEEEEEecCCCCCCCCCeeecCCCCCcccccccCceeeec---CC
Q 032122 49 KSNDNDWFRISAANPEGTRWTGKCWY--VHNLLKYEFDLQFDIPVTYPATAPELELPQLDGKTQKMYRGGKICLT---VH 123 (147)
Q Consensus 49 k~~d~dwf~Lep~n~dgTrW~gkcw~--~~~~~~yeF~lefdIP~tYP~tpPeI~fPeldgkt~kmYrgGkICL~---dH 123 (147)
.++-.|-|.+-+-+.|.|.=.+.+=| ++||.+--|++.+-+--.+|.+||+=-|-.-..|+|+. ..|+||.+ -.
T Consensus 23 ~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVa-aNGEICVNtLKkD 101 (223)
T KOG0423|consen 23 DESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVA-ANGEICVNTLKKD 101 (223)
T ss_pred ccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcc-cCceehhhhhhcc
Confidence 34557788665622667766666666 78888889999999999999999999887777788886 47999987 77
Q ss_pred cccc
Q 032122 124 FKPL 127 (147)
Q Consensus 124 f~Pl 127 (147)
|+|-
T Consensus 102 W~p~ 105 (223)
T KOG0423|consen 102 WNPS 105 (223)
T ss_pred cCcc
Confidence 8874
No 25
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.023 Score=48.85 Aligned_cols=98 Identities=16% Similarity=0.230 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCceEEeeCCCCCCeeeeeeeeee-cccceeEEEEEecCCCCCCCC--CeeecCCCCCcc
Q 032122 33 RLKEEYKALIAYTQMNKSNDNDWFRISAANPEGTRWTGKCWYVH-NLLKYEFDLQFDIPVTYPATA--PELELPQLDGKT 109 (147)
Q Consensus 33 RLkeEY~aLikyv~~nk~~d~dwf~Lep~n~dgTrW~gkcw~~~-~~~~yeF~lefdIP~tYP~tp--PeI~fPeldgkt 109 (147)
-++.||.-|-.|+.--++. -+.+...|+-..+--|+|.+..-+ =|.+--|++.|-||..||..- |.+-|..--.|+
T Consensus 17 ~i~qey~llAEf~lV~~ek-L~gIyviPSyan~l~WFGViFvr~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP 95 (258)
T KOG0429|consen 17 NILQEYALLAEFVLVCREK-LDGIYVIPSYANKLLWFGVIFVRKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHP 95 (258)
T ss_pred HHHHHHHHHHHHHHHHhcc-CCceEEcccccccceEEEEEEEecccccCceEEEEEEcCccCCCcCCCCeEEeecccccc
Confidence 3678888888887665433 344544464678999999998844 467889999999999999543 999886554588
Q ss_pred cccccCceeeecCCcccccccCC
Q 032122 110 QKMYRGGKICLTVHFKPLWAKNW 132 (147)
Q Consensus 110 ~kmYrgGkICL~dHf~PlW~~n~ 132 (147)
.+-=.+|+.||+ |+-|-|-|+-
T Consensus 96 ~icp~skeLdl~-raf~eWRk~e 117 (258)
T KOG0429|consen 96 LICPKSKELDLN-RAFPEWRKEE 117 (258)
T ss_pred ccCCCccceeHh-hhhhhhhccc
Confidence 888889999986 5556688763
No 26
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=95.26 E-value=0.073 Score=36.60 Aligned_cols=65 Identities=20% Similarity=0.233 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCceEEeeCCCCCCeeeeeee----eeecccceeEEEEEecCCCCCCCCCeeecC
Q 032122 31 TQRLKEEYKALIAYTQMNKSNDNDWFRISAANPEGTRWTGKCW----YVHNLLKYEFDLQFDIPVTYPATAPELELP 103 (147)
Q Consensus 31 ~~RLkeEY~aLikyv~~nk~~d~dwf~Lep~n~dgTrW~gkcw----~~~~~~~yeF~lefdIP~tYP~tpPeI~fP 103 (147)
.++..+|..+|..--.+.. ++....+.....-++- ....-....+.|.|.+|.+||.+||.|.+-
T Consensus 3 ~e~~~~EieaL~sIy~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~ 71 (113)
T PF05773_consen 3 EEQQEEEIEALQSIYPDDF--------IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLE 71 (113)
T ss_dssp HHHHHHHHHHHHHHSSSSE--------SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEE
T ss_pred HHHHHHHHHHHHHHcCCCc--------cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEE
Confidence 4678899999877543332 1110011111222220 022233448999999999999999999874
No 27
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=95.17 E-value=0.019 Score=57.31 Aligned_cols=83 Identities=23% Similarity=0.484 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcC-----CCCCCceEEeeCCCCCCeeeeeeeeeecccceeEEEEEecCCCCCCCCCeeecC
Q 032122 29 AWTQRLKEEYKALIAYTQMNK-----SNDNDWFRISAANPEGTRWTGKCWYVHNLLKYEFDLQFDIPVTYPATAPELELP 103 (147)
Q Consensus 29 ~w~~RLkeEY~aLikyv~~nk-----~~d~dwf~Lep~n~dgTrW~gkcw~~~~~~~yeF~lefdIP~tYP~tpPeI~fP 103 (147)
+|.+....||+.|..-+-+.- +.--|..+.-=++..||.+... -|-+.|..|.+||.+||-+-.-
T Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~----------~f~fd~~~~~~yp~~pp~~~~~ 920 (1101)
T KOG0895|consen 851 QWAKKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDG----------LFFFDFQFPQDYPSSPPLVHYH 920 (1101)
T ss_pred HHHHHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccc----------eEEEEeecCCCCCCCCCceEee
Confidence 688877778777653221110 0002222111234556655544 5667778899999999998764
Q ss_pred CCCC-cccccccCceeeec
Q 032122 104 QLDG-KTQKMYRGGKICLT 121 (147)
Q Consensus 104 eldg-kt~kmYrgGkICL~ 121 (147)
.--. -..-.|.+||+||.
T Consensus 921 s~~~r~npnly~~g~vc~s 939 (1101)
T KOG0895|consen 921 SGGVRLNPNLYEDGKVCLS 939 (1101)
T ss_pred cCceeeCcccccccceehh
Confidence 3322 23346999999995
No 28
>COG3449 DNA gyrase inhibitor [DNA replication, recombination, and repair]
Probab=93.59 E-value=0.13 Score=41.26 Aligned_cols=67 Identities=21% Similarity=0.295 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCceEEeeCCCCCCeeeeeeee---eecccceeEEEEEecCCCCCCCCCeeecCCCC
Q 032122 30 WTQRLKEEYKALIAYTQMNKSNDNDWFRISAANPEGTRWTGKCWY---VHNLLKYEFDLQFDIPVTYPATAPELELPQLD 106 (147)
Q Consensus 30 w~~RLkeEY~aLikyv~~nk~~d~dwf~Lep~n~dgTrW~gkcw~---~~~~~~yeF~lefdIP~tYP~tpPeI~fPeld 106 (147)
|...|++=.++|++++..| +|-| +.|.|.|+||. +++=++|.+|+...+|..-+...+.|.+-++.
T Consensus 21 ~~~~~~~~~~~l~~W~~~~--------~l~p---~~S~~~gI~~ddP~~Tp~e~~R~D~cv~v~~~~~~n~~~v~~~~i~ 89 (154)
T COG3449 21 DPATLKQTFEQLIAWRREN--------GLLP---EQSETLGIYQDDPDTTPAEKCRYDACVVVPEPIPENSEGVQLGEIP 89 (154)
T ss_pred cHHHHHHHHHHHHHHHHHc--------CCCC---CCceEEEEecCCCCCCCHHHceeeEEEEcCCccCCCCCceeEeeec
Confidence 8899999999999999999 6755 48899999998 88999999999999998888888888887777
Q ss_pred C
Q 032122 107 G 107 (147)
Q Consensus 107 g 107 (147)
|
T Consensus 90 G 90 (154)
T COG3449 90 G 90 (154)
T ss_pred C
Confidence 3
No 29
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=93.05 E-value=0.091 Score=41.89 Aligned_cols=45 Identities=20% Similarity=0.262 Sum_probs=39.3
Q ss_pred CCCCeeeeeeee--eecccceeEEEEEecCCCCCCCCCeeecCCCCC
Q 032122 63 PEGTRWTGKCWY--VHNLLKYEFDLQFDIPVTYPATAPELELPQLDG 107 (147)
Q Consensus 63 ~dgTrW~gkcw~--~~~~~~yeF~lefdIP~tYP~tpPeI~fPeldg 107 (147)
--+++|.|.+-+ -+.|++--+.|.|+.-..||.+||.++|-.-+.
T Consensus 36 mtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkin 82 (138)
T KOG0896|consen 36 MTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKIN 82 (138)
T ss_pred ceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEee
Confidence 568999999999 888999999999999999999999999854433
No 30
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=92.45 E-value=0.14 Score=35.08 Aligned_cols=25 Identities=32% Similarity=0.603 Sum_probs=21.6
Q ss_pred ceeEEEEEecCCCCCCCCCeeecCC
Q 032122 80 KYEFDLQFDIPVTYPATAPELELPQ 104 (147)
Q Consensus 80 ~yeF~lefdIP~tYP~tpPeI~fPe 104 (147)
.-.+.|.|..|.+||.++|.|.+-.
T Consensus 40 ~~~~~l~~~~p~~YP~~~P~i~~~~ 64 (107)
T smart00591 40 YVSLTLQVKLPENYPDEAPPISLLN 64 (107)
T ss_pred ceEEEEEEECCCCCCCCCCCeEEEC
Confidence 3468999999999999999998853
No 31
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=88.16 E-value=1.1 Score=33.63 Aligned_cols=63 Identities=21% Similarity=0.385 Sum_probs=37.6
Q ss_pred CCCCeeeeeeee-----eecccceeEEEEEecCCCCCCCCCeeec-CCCCC--cc--cccccCceeeec--CCccc
Q 032122 63 PEGTRWTGKCWY-----VHNLLKYEFDLQFDIPVTYPATAPELEL-PQLDG--KT--QKMYRGGKICLT--VHFKP 126 (147)
Q Consensus 63 ~dgTrW~gkcw~-----~~~~~~yeF~lefdIP~tYP~tpPeI~f-Peldg--kt--~kmYrgGkICL~--dHf~P 126 (147)
.||+.=.=.|-+ .+.-..|..-+.|-||.+||.+||-+-+ |+.++ +. .+.- .|+|.+. +.|.+
T Consensus 25 ~~G~~~~LL~L~Gtipi~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~-~G~v~~pyL~~W~~ 99 (121)
T PF05743_consen 25 NDGSSKLLLCLYGTIPITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDS-NGRVYLPYLQNWNP 99 (121)
T ss_dssp TTSTEEEEEEEEEEEEECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-T-TSBB-SHHHHT--T
T ss_pred CCCChheEEEEecCcccccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECC-CCCEeCchhccCCC
Confidence 455543333333 3333458999999999999999999977 44442 22 3333 5788876 77766
No 32
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=56.96 E-value=9.3 Score=29.65 Aligned_cols=28 Identities=29% Similarity=0.456 Sum_probs=21.9
Q ss_pred ccceeEEEEEecCCCCCCCCCeeec--CCC
Q 032122 78 LLKYEFDLQFDIPVTYPATAPELEL--PQL 105 (147)
Q Consensus 78 ~~~yeF~lefdIP~tYP~tpPeI~f--Pel 105 (147)
|..-+=+|-|.||..||.++|.+-. |.|
T Consensus 39 y~~~~~dili~iP~gYP~~~~DmfY~~P~L 68 (122)
T PF14462_consen 39 YNHNEVDILILIPPGYPDAPLDMFYVYPPL 68 (122)
T ss_pred cCccceEEEEECCCCCCCCCCCcEEECCce
Confidence 3444679999999999999998754 555
No 33
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=52.40 E-value=8.4 Score=30.35 Aligned_cols=43 Identities=23% Similarity=0.293 Sum_probs=29.2
Q ss_pred eEEE-EEecCCCCCCCCCeeec--CCCCCcccccccCceeeec----CCccc
Q 032122 82 EFDL-QFDIPVTYPATAPELEL--PQLDGKTQKMYRGGKICLT----VHFKP 126 (147)
Q Consensus 82 eF~l-efdIP~tYP~tpPeI~f--Peldgkt~kmYrgGkICL~----dHf~P 126 (147)
++.| .+.-|.+||-.||+++. |-+|+-+. -.||.||.. .-|+-
T Consensus 11 e~ill~~~f~~~fp~~ppf~rvv~p~~~~Gyv--l~ggAIcmellt~qgwss 60 (122)
T KOG0897|consen 11 ENILLLDIFDDNFPFMPPFPRVVKPLEDEGYV--LEGGAICMELLTKQGWSS 60 (122)
T ss_pred ceeEeeeecccCCCCCCCcceeeeecccCCEE--ecchhhHHHHHccccccc
Confidence 4544 44557999999999887 55554332 359999985 55544
No 34
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=42.14 E-value=27 Score=31.39 Aligned_cols=30 Identities=20% Similarity=0.541 Sum_probs=25.3
Q ss_pred eecccceeEEEEEecCCCCCCCCCeeecCC
Q 032122 75 VHNLLKYEFDLQFDIPVTYPATAPELELPQ 104 (147)
Q Consensus 75 ~~~~~~yeF~lefdIP~tYP~tpPeI~fPe 104 (147)
......|.|-++|+||..+|...|.+.|-.
T Consensus 300 L~~~~~F~flvHi~Lp~~FP~~qP~ltlqS 329 (333)
T PF06113_consen 300 LLESGDFTFLVHISLPIQFPKDQPSLTLQS 329 (333)
T ss_pred HhhcCCeEEEEEEeccCCCCCcCCeEEEEe
Confidence 345567899999999999999999998753
No 35
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=32.02 E-value=35 Score=29.50 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=19.5
Q ss_pred eEEEEEecCCCCCCCCCeeecCC
Q 032122 82 EFDLQFDIPVTYPATAPELELPQ 104 (147)
Q Consensus 82 eF~lefdIP~tYP~tpPeI~fPe 104 (147)
+..|++.+|..||..+|++..|-
T Consensus 138 ~H~l~l~l~~~yp~~~p~~~~~~ 160 (291)
T PF09765_consen 138 QHYLELKLPSNYPFEPPSCSLDL 160 (291)
T ss_dssp EEEEEEETTTTTTTSEEEECS-T
T ss_pred eEEEEEEECCCCCCCCceeeCCC
Confidence 66789999999999999998773
No 36
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=31.49 E-value=48 Score=28.27 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=20.2
Q ss_pred eEEEEEecCCCCCCCCCeeecCC
Q 032122 82 EFDLQFDIPVTYPATAPELELPQ 104 (147)
Q Consensus 82 eF~lefdIP~tYP~tpPeI~fPe 104 (147)
.|.|.|..+.+||..||-|.+-+
T Consensus 50 ~~~l~~s~tEnYPDe~Pli~~~~ 72 (215)
T KOG4018|consen 50 SFILVFSLTENYPDEAPLIEAFE 72 (215)
T ss_pred cEEEEEEccCCCCCCCcceeccc
Confidence 79999999999999999995533
No 37
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=28.88 E-value=26 Score=28.45 Aligned_cols=46 Identities=20% Similarity=0.422 Sum_probs=28.4
Q ss_pred CCce-EEeeCCCCCCeeeeeeee---eecccceeEEEEEecCCCCCCCCCeeec
Q 032122 53 NDWF-RISAANPEGTRWTGKCWY---VHNLLKYEFDLQFDIPVTYPATAPELEL 102 (147)
Q Consensus 53 ~dwf-~Lep~n~dgTrW~gkcw~---~~~~~~yeF~lefdIP~tYP~tpPeI~f 102 (147)
.|+| .|| ||-+...-=.+ .|.+--=+++---++|..|||++|..+-
T Consensus 74 pD~IicLE----DGkkfKSLKRHL~t~~gmTPd~YR~KW~LP~dYPMvAPnYAa 123 (148)
T COG4957 74 PDYIICLE----DGKKFKSLKRHLTTHYGLTPDEYRAKWGLPPDYPMVAPNYAA 123 (148)
T ss_pred CCeEEEec----cCcchHHHHHHHhcccCCCHHHHHHhcCCCCCCCccchHHHH
Confidence 4555 553 45554443333 3444444566667899999999997653
No 38
>PF00339 Arrestin_N: Arrestin (or S-antigen), N-terminal domain; InterPro: IPR011021 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli. The receptors relay the information encoded by the ligand through the activation of heterotrimeric G proteins and intracellular effector molecules. To ensure the appropriate regulation of the signalling cascade, it is vital to properly inactivate the receptor. This inactivation is achieved, in part, by the binding of a soluble protein, arrestin, which uncouples the receptor from the downstream G protein after the receptors are phosphorylated by G protein-coupled receptor kinases. In addition to the inactivation of G protein-coupled receptors, arrestins have also been implicated in the endocytosis of receptors and cross talk with other signalling pathways. Arrestin (retinal S-antigen) is a major protein of the retinal rod outer segments. It interacts with photo-activated phosphorylated rhodopsin, inhibiting or 'arresting' its ability to interact with transducin []. The protein binds calcium, and shows similarity in its C terminus to alpha-transducin and other purine nucleotide-binding proteins. In mammals, arrestin is associated with autoimmune uveitis. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X) [], which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction [, , ]. The crystal structure of bovine retinal arrestin comprises two domains of antiparallel beta-sheets connected through a hinge region and one short alpha-helix on the back of the amino-terminal fold []. The binding region for phosphorylated light-activated rhodopsin is located at the N-terminal domain, as indicated by the docking of the photoreceptor to the three-dimensional structure of arrestin. The N-terminal domain consists of an immunoglobulin-like beta-sandwich structure. This entry represents proteins with immunoglobulin-like domains that are similar to those found in arrestin.; PDB: 1SUJ_A 3UGX_A 1CF1_B 1AYR_A 3UGU_A 3P2D_B 1ZSH_A 2WTR_B 3GC3_A 1G4R_A ....
Probab=26.84 E-value=45 Score=23.43 Aligned_cols=19 Identities=32% Similarity=0.822 Sum_probs=10.0
Q ss_pred ceeEEEEEecCCCCCCCCCeee
Q 032122 80 KYEFDLQFDIPVTYPATAPELE 101 (147)
Q Consensus 80 ~yeF~lefdIP~tYP~tpPeI~ 101 (147)
.|+|.++|.||..- ||-+.
T Consensus 94 ~~~fpF~f~LP~~l---P~S~~ 112 (149)
T PF00339_consen 94 EYEFPFEFQLPSNL---PSSFE 112 (149)
T ss_dssp TTEEEEEE---TTS-----SEE
T ss_pred CEEEEEEEECCCCC---CceEe
Confidence 58999999999554 44443
No 39
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=26.31 E-value=22 Score=35.17 Aligned_cols=87 Identities=16% Similarity=0.223 Sum_probs=0.0
Q ss_pred ceeeccCCCC--ChhHHHHHHHHHHHH---HHHHHHhcC-CCCCCce-EEeeCCCCC-CeeeeeeeeeecccceeEEEEE
Q 032122 16 PLLSTKAGPR--DGAAWTQRLKEEYKA---LIAYTQMNK-SNDNDWF-RISAANPEG-TRWTGKCWYVHNLLKYEFDLQF 87 (147)
Q Consensus 16 pl~~~~agpr--d~~~w~~RLkeEY~a---Likyv~~nk-~~d~dwf-~Lep~n~dg-TrW~gkcw~~~~~~~yeF~lef 87 (147)
|.|++--||- +.....+|.|=|... |..-|+-.- .-|..+. .|+|..-.+ ..=.=+||-+...+--.=-|++
T Consensus 641 p~~~~~~g~~~~~~~~~~k~~~~~~~~~~~ip~~lqgEva~Ld~kF~v~ldp~~~~~~~~v~Lic~Ldd~~LP~VPPl~l 720 (799)
T PF09606_consen 641 PAMTALHGPPIKAPPPPPKKRRLEEDERQSIPNVLQGEVARLDPKFKVNLDPSHCSGNGSVHLICKLDDKNLPSVPPLRL 720 (799)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhhccCCCCCCCCCcchhcccchhhhhhhHHHHHHHHHHhcccceeecChhccCCCCeEEEEEEeCCCCCCCCCCeeE
Confidence 6677777763 234466666655533 222222221 1233333 777733222 2233567766666666777899
Q ss_pred ecCCCCCCCCCeeec
Q 032122 88 DIPVTYPATAPELEL 102 (147)
Q Consensus 88 dIP~tYP~tpPeI~f 102 (147)
.||.+||.++|.+.+
T Consensus 721 ~vP~~YP~~sp~~~~ 735 (799)
T PF09606_consen 721 TVPADYPRQSPQCSV 735 (799)
T ss_dssp ---------------
T ss_pred eCCCCCCccCCcCcc
Confidence 999999999999876
No 40
>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=26.23 E-value=43 Score=25.59 Aligned_cols=32 Identities=16% Similarity=0.084 Sum_probs=22.9
Q ss_pred CCcccccccCceee--ecCCcccccccCCceeEe
Q 032122 106 DGKTQKMYRGGKIC--LTVHFKPLWAKNWYFCFT 137 (147)
Q Consensus 106 dgkt~kmYrgGkIC--L~dHf~PlW~~n~p~~~~ 137 (147)
.|++++.+|.|+++ +..----+|..|.|+...
T Consensus 21 e~~~av~~~~Gk~~~~~~~g~~~~~~~~~p~~~~ 54 (207)
T cd03408 21 EGQAAVFVNEGKVADVFAPGGYYLTTNNLPVLAF 54 (207)
T ss_pred CCcEEEEEECCEEEEEecCCcceeeecCccHHHH
Confidence 46899999999999 344444466677776543
No 41
>PF08872 KGK: KGK domain; InterPro: IPR014971 This protein is found in one or two copies in cyanobacterial proteins. It is named after a short sequence motif.
Probab=26.11 E-value=1.6e+02 Score=22.47 Aligned_cols=21 Identities=33% Similarity=0.759 Sum_probs=13.8
Q ss_pred CCCeee-eeeeeeecccceeEEEEEecCCC
Q 032122 64 EGTRWT-GKCWYVHNLLKYEFDLQFDIPVT 92 (147)
Q Consensus 64 dgTrW~-gkcw~~~~~~~yeF~lefdIP~t 92 (147)
....|. ||. +-++.||| +|.+
T Consensus 75 g~~~W~kGK~-------ri~~~leF-~pde 96 (114)
T PF08872_consen 75 GSKGWQKGKV-------RIKVSLEF-IPDE 96 (114)
T ss_pred CCCCCccceE-------EEEEEEEE-ecCC
Confidence 445888 774 44668887 6654
No 42
>PF14511 RE_EcoO109I: Type II restriction endonuclease EcoO109I; PDB: 1WTD_A 1WTE_A.
Probab=25.11 E-value=1e+02 Score=25.88 Aligned_cols=34 Identities=18% Similarity=0.282 Sum_probs=24.4
Q ss_pred cceeeccCCCCChhH-HHHHHHHHHHHHHHHHHhc
Q 032122 15 IPLLSTKAGPRDGAA-WTQRLKEEYKALIAYTQMN 48 (147)
Q Consensus 15 ipl~~~~agprd~~~-w~~RLkeEY~aLikyv~~n 48 (147)
.=+|+.|+||-.+++ =+..|+++++++++.+..|
T Consensus 105 ~~~~~iKSGpNt~N~~qi~~~~~~Fk~~~~~~r~~ 139 (200)
T PF14511_consen 105 RYICQIKSGPNTINSDQIKKMKDHFKEAKNLLRTN 139 (200)
T ss_dssp EEEEEEESSTTS--HHHHHHHHHHHHHHHHH----
T ss_pred EEEEEEecCCCcCCHHHHHHHHHHHHHHHHhhccc
Confidence 447899999988854 6789999999999988765
No 43
>PF03920 TLE_N: Groucho/TLE N-terminal Q-rich domain; InterPro: IPR005617 The N-terminal domain of the Grouch/TLE co-repressor proteins are involved in oligomerisation.; GO: 0005515 protein binding
Probab=23.06 E-value=73 Score=25.51 Aligned_cols=19 Identities=32% Similarity=0.300 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 032122 30 WTQRLKEEYKALIAYTQMN 48 (147)
Q Consensus 30 w~~RLkeEY~aLikyv~~n 48 (147)
=.+|||+||.-|.+...+.
T Consensus 24 s~drIKeEf~~lqaq~hsl 42 (135)
T PF03920_consen 24 SCDRIKEEFQFLQAQYHSL 42 (135)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4689999999999988666
No 44
>COG2005 ModE N-terminal domain of molybdenum-binding protein [General function prediction only]
Probab=21.72 E-value=1.1e+02 Score=23.95 Aligned_cols=48 Identities=25% Similarity=0.338 Sum_probs=37.7
Q ss_pred hhhhhcccceeeccCCCCChh-----HHHHHHHHHHHHHHHHHHhcCCCCCCc
Q 032122 8 TKSTLTQIPLLSTKAGPRDGA-----AWTQRLKEEYKALIAYTQMNKSNDNDW 55 (147)
Q Consensus 8 t~~~~~~ipl~~~~agprd~~-----~w~~RLkeEY~aLikyv~~nk~~d~dw 55 (147)
....+.+.||+.++-|=+.+- .--+||.+||..+-+.++.--..+.||
T Consensus 54 ~~n~~~~~plVe~~rGGk~gGga~LT~~g~~ll~~y~~l~~~~~~~~~~~~~~ 106 (130)
T COG2005 54 ALNRLLGEPLVERRRGGKGGGGAVLTDFGERLLEEYRLLEKEIEEALRKLEDE 106 (130)
T ss_pred HHHHHhCCCeeeeccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345678889999998887763 578999999999998887665556676
No 45
>PF01243 Pyridox_oxidase: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR011576 Pyridoxamine 5'-phosphate oxidase (PNPOx; 1.4.3.5 from EC) is a FMN flavoprotein that catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP). This reaction serves as the terminal step in the de novo biosynthesis of PLP in Escherichia coli and as a part of the salvage pathway of this coenzyme in both E. coli and mammalian cells [, ]. The binding sites for FMN and for substrate have been highly conserved throughout evolution. This entry represents the FMN-binding domain present in pyridoxamine 5'-phosphate oxidases, as well as in a number of proteins that have not been demonstrated to have enzymatic activity. The FMN-binding domain has a structure consisting of a beta-barrel with Greek key topology, and is related to the ferredoxin reductase-like FAD-binding domain. PNPOx has a different dimerisation mode than that found in flavin reductases, which also carry an FMN-binding domain with a similar topology. ; GO: 0004733 pyridoxamine-phosphate oxidase activity, 0010181 FMN binding, 0055114 oxidation-reduction process; PDB: 2IG6_A 1CI0_A 2HQ7_B 2HTD_B 3EC6_A 1WV4_B 1DNL_A 1G76_A 1G79_A 1G77_A ....
Probab=20.75 E-value=1.5e+02 Score=18.98 Aligned_cols=39 Identities=15% Similarity=0.452 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCCceEEeeCCCCCCeeeeeeeeeecccc
Q 032122 34 LKEEYKALIAYTQMNKSNDNDWFRISAANPEGTRWTGKCWYVHNLLK 80 (147)
Q Consensus 34 LkeEY~aLikyv~~nk~~d~dwf~Lep~n~dgTrW~gkcw~~~~~~~ 80 (147)
|.||..++++ ....+.|..+++||..|-.-.|+..--..
T Consensus 1 l~~~~~~~l~--------~~~~~~laTv~~dG~P~~~~v~~~~~~~~ 39 (89)
T PF01243_consen 1 LTEEIREFLE--------ESKYCVLATVDEDGRPHASPVWFVYDDDD 39 (89)
T ss_dssp HHHHHHHHHH--------STSEEEEEEEETTSEEEEEEEEEEEECTT
T ss_pred CcHHHHHHhc--------CCCEEEEEEECCCCCEEEEEEeeecCCce
Confidence 5667666654 23677998888999999999888544433
No 46
>KOG3387 consensus 60S ribosomal protein 15.5kD/SNU13, NHP2/L7A family (includes ribonuclease P subunit p38), involved in splicing [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=20.67 E-value=48 Score=26.46 Aligned_cols=9 Identities=33% Similarity=0.486 Sum_probs=7.2
Q ss_pred ccCCceeEe
Q 032122 129 AKNWYFCFT 137 (147)
Q Consensus 129 ~~n~p~~~~ 137 (147)
+|||||||.
T Consensus 75 dknVp~v~V 83 (131)
T KOG3387|consen 75 DKNVPYVFV 83 (131)
T ss_pred ccCCceEEe
Confidence 589999874
Done!