Query 032124
Match_columns 147
No_of_seqs 107 out of 328
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 15:59:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032124.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032124hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_T 40S ribosomal protein S 100.0 7.3E-76 2.5E-80 455.8 10.7 136 1-137 1-137 (144)
2 2xzm_T RPS19E; ribosome, trans 100.0 1.8E-74 6.3E-79 452.3 11.9 136 3-138 6-146 (155)
3 3iz6_S 40S ribosomal protein S 100.0 5.3E-75 1.8E-79 451.8 8.0 133 5-137 7-139 (146)
4 2v7f_A RPS19, RPS19E SSU ribos 100.0 5.6E-53 1.9E-57 327.0 9.3 134 4-137 1-134 (150)
5 2pg4_A Uncharacterized protein 97.3 0.00024 8.1E-09 48.3 4.4 69 55-137 14-88 (95)
6 1r7j_A Conserved hypothetical 97.2 0.00071 2.4E-08 47.5 6.0 62 58-136 10-71 (95)
7 2h09_A Transcriptional regulat 97.2 0.00085 2.9E-08 48.7 6.5 60 63-136 47-106 (155)
8 1on2_A Transcriptional regulat 97.1 0.0015 5.1E-08 46.6 7.1 63 61-137 13-75 (142)
9 3g3z_A NMB1585, transcriptiona 97.1 0.0013 4.6E-08 46.4 6.2 64 60-137 35-104 (145)
10 2x4h_A Hypothetical protein SS 96.9 0.0026 8.8E-08 45.1 6.7 54 68-136 29-82 (139)
11 1jgs_A Multiple antibiotic res 96.9 0.0029 1E-07 44.0 6.8 63 61-137 39-107 (138)
12 3oop_A LIN2960 protein; protei 96.9 0.0017 5.7E-08 45.8 5.6 63 61-137 42-110 (143)
13 2qww_A Transcriptional regulat 96.9 0.0025 8.4E-08 45.3 6.4 64 61-138 46-117 (154)
14 2nyx_A Probable transcriptiona 96.7 0.0034 1.2E-07 45.9 6.4 63 61-137 50-118 (168)
15 3eco_A MEPR; mutlidrug efflux 96.7 0.0032 1.1E-07 44.0 6.0 64 60-137 35-106 (139)
16 2hr3_A Probable transcriptiona 96.7 0.0044 1.5E-07 43.5 6.5 65 59-137 38-109 (147)
17 3s2w_A Transcriptional regulat 96.7 0.0036 1.2E-07 45.0 6.2 63 61-137 55-123 (159)
18 3ech_A MEXR, multidrug resista 96.7 0.004 1.4E-07 43.9 6.3 63 61-137 42-110 (142)
19 2frh_A SARA, staphylococcal ac 96.7 0.0017 5.8E-08 46.1 4.3 63 61-137 42-112 (127)
20 3k0l_A Repressor protein; heli 96.7 0.0048 1.6E-07 44.6 6.8 63 61-137 51-119 (162)
21 3bro_A Transcriptional regulat 96.7 0.005 1.7E-07 42.8 6.6 62 61-136 39-108 (141)
22 3e6m_A MARR family transcripti 96.7 0.0036 1.2E-07 45.3 6.0 63 61-137 58-126 (161)
23 2gxg_A 146AA long hypothetical 96.7 0.0038 1.3E-07 43.7 5.9 61 61-136 42-108 (146)
24 3kp7_A Transcriptional regulat 96.7 0.0043 1.5E-07 44.1 6.3 62 61-137 43-112 (151)
25 2bv6_A MGRA, HTH-type transcri 96.7 0.003 1E-07 44.2 5.3 63 61-137 42-110 (142)
26 1tbx_A ORF F-93, hypothetical 96.6 0.0024 8.4E-08 43.1 4.6 64 60-137 12-82 (99)
27 3bpv_A Transcriptional regulat 96.6 0.0039 1.3E-07 43.2 5.7 64 60-137 33-102 (138)
28 1sfx_A Conserved hypothetical 96.6 0.0036 1.2E-07 41.6 5.1 63 60-136 24-91 (109)
29 1xmk_A Double-stranded RNA-spe 96.6 0.0044 1.5E-07 42.9 5.7 61 58-133 13-77 (79)
30 3nrv_A Putative transcriptiona 96.6 0.0065 2.2E-07 42.8 6.6 63 61-137 45-113 (148)
31 2qvo_A Uncharacterized protein 96.6 0.0021 7.2E-08 43.7 3.8 66 57-137 13-86 (95)
32 3bja_A Transcriptional regulat 96.5 0.0046 1.6E-07 42.8 5.6 62 61-136 38-105 (139)
33 3bj6_A Transcriptional regulat 96.5 0.0055 1.9E-07 43.2 6.0 62 61-136 45-112 (152)
34 2fa5_A Transcriptional regulat 96.5 0.007 2.4E-07 43.2 6.6 62 61-136 54-121 (162)
35 2eth_A Transcriptional regulat 96.5 0.0077 2.6E-07 43.0 6.8 63 60-136 48-116 (154)
36 2nnn_A Probable transcriptiona 96.5 0.0054 1.8E-07 42.4 5.6 63 61-137 43-111 (140)
37 4hbl_A Transcriptional regulat 96.5 0.0037 1.3E-07 44.6 4.9 63 61-137 46-114 (149)
38 3hsr_A HTH-type transcriptiona 96.5 0.0031 1E-07 44.6 4.3 64 60-137 40-109 (140)
39 2rdp_A Putative transcriptiona 96.5 0.0079 2.7E-07 42.3 6.4 63 61-137 47-115 (150)
40 3jw4_A Transcriptional regulat 96.4 0.0035 1.2E-07 44.4 4.6 63 61-137 46-116 (148)
41 2fsw_A PG_0823 protein; alpha- 96.4 0.0042 1.4E-07 43.2 4.8 63 60-136 29-97 (107)
42 2fbi_A Probable transcriptiona 96.4 0.0049 1.7E-07 42.8 5.2 64 60-137 40-109 (142)
43 3cjn_A Transcriptional regulat 96.4 0.0058 2E-07 43.8 5.7 62 61-136 57-124 (162)
44 2hzt_A Putative HTH-type trans 96.4 0.0045 1.5E-07 43.1 4.8 63 60-136 18-86 (107)
45 3tgn_A ADC operon repressor AD 96.4 0.0065 2.2E-07 42.6 5.7 61 61-136 43-109 (146)
46 1z91_A Organic hydroperoxide r 96.4 0.0053 1.8E-07 43.1 5.2 63 61-137 45-113 (147)
47 1stz_A Heat-inducible transcri 96.4 0.0098 3.3E-07 50.2 7.7 67 57-135 18-91 (338)
48 2pex_A Transcriptional regulat 96.4 0.0088 3E-07 42.5 6.3 63 61-137 52-120 (153)
49 1z7u_A Hypothetical protein EF 96.3 0.0046 1.6E-07 43.4 4.7 63 60-136 26-94 (112)
50 1lj9_A Transcriptional regulat 96.3 0.0085 2.9E-07 41.9 5.9 62 61-136 34-101 (144)
51 3deu_A Transcriptional regulat 96.3 0.0082 2.8E-07 44.1 6.1 63 61-137 58-127 (166)
52 2a61_A Transcriptional regulat 96.3 0.0076 2.6E-07 42.0 5.6 63 60-136 37-105 (145)
53 3hrs_A Metalloregulator SCAR; 96.3 0.0067 2.3E-07 47.3 5.8 56 68-137 18-73 (214)
54 3cdh_A Transcriptional regulat 96.2 0.01 3.5E-07 42.2 6.1 63 61-137 48-116 (155)
55 3bdd_A Regulatory protein MARR 96.2 0.0096 3.3E-07 41.2 5.8 61 61-135 36-103 (142)
56 2fbh_A Transcriptional regulat 96.2 0.012 4.2E-07 40.9 6.4 62 61-136 42-110 (146)
57 3b73_A PHIH1 repressor-like pr 96.2 0.0098 3.4E-07 43.2 5.9 66 59-136 16-81 (111)
58 1y0u_A Arsenical resistance op 96.2 0.0091 3.1E-07 40.5 5.4 54 60-130 35-88 (96)
59 1s3j_A YUSO protein; structura 96.2 0.0071 2.4E-07 42.8 5.0 62 61-136 42-109 (155)
60 2f2e_A PA1607; transcription f 96.1 0.0092 3.2E-07 44.0 5.6 61 60-135 28-93 (146)
61 1ub9_A Hypothetical protein PH 96.1 0.0088 3E-07 39.6 5.0 64 60-137 20-89 (100)
62 3u2r_A Regulatory protein MARR 96.1 0.0092 3.2E-07 43.3 5.4 63 61-137 51-121 (168)
63 3fm5_A Transcriptional regulat 96.1 0.013 4.5E-07 41.5 6.1 63 61-137 44-113 (150)
64 2oqg_A Possible transcriptiona 96.1 0.01 3.5E-07 40.5 5.3 62 59-136 24-89 (114)
65 4a5n_A Uncharacterized HTH-typ 96.0 0.0096 3.3E-07 44.1 5.0 63 60-136 30-98 (131)
66 3df8_A Possible HXLR family tr 96.0 0.0086 2.9E-07 42.3 4.5 63 60-136 31-97 (111)
67 3cuo_A Uncharacterized HTH-typ 95.9 0.012 4.1E-07 39.0 4.7 61 59-133 27-90 (99)
68 2o0m_A Transcriptional regulat 95.8 0.0014 5E-08 54.4 0.0 64 57-135 21-84 (345)
69 4b8x_A SCO5413, possible MARR- 95.8 0.015 5E-07 42.1 5.3 63 61-137 40-110 (147)
70 2p8t_A Hypothetical protein PH 95.8 0.024 8.2E-07 45.4 6.9 55 68-137 28-82 (200)
71 3nqo_A MARR-family transcripti 95.8 0.021 7.3E-07 42.8 6.3 63 61-137 46-116 (189)
72 3f3x_A Transcriptional regulat 95.8 0.016 5.4E-07 40.7 5.2 62 61-137 42-109 (144)
73 1q1h_A TFE, transcription fact 95.7 0.0098 3.3E-07 41.0 3.9 53 59-125 21-78 (110)
74 2y75_A HTH-type transcriptiona 95.7 0.035 1.2E-06 39.4 6.8 59 57-129 10-73 (129)
75 3boq_A Transcriptional regulat 95.7 0.016 5.4E-07 41.3 4.9 63 61-137 52-121 (160)
76 1bja_A Transcription regulator 95.5 0.021 7.3E-07 40.9 5.1 64 58-136 18-82 (95)
77 1yyv_A Putative transcriptiona 95.4 0.013 4.3E-07 42.8 3.7 63 60-136 39-107 (131)
78 3l7w_A Putative uncharacterize 95.4 0.011 3.8E-07 41.5 3.2 66 61-137 14-86 (108)
79 1fx7_A Iron-dependent represso 95.3 0.036 1.2E-06 43.2 6.2 53 70-136 22-76 (230)
80 3tqn_A Transcriptional regulat 95.3 0.07 2.4E-06 37.6 7.2 64 54-131 10-80 (113)
81 2fxa_A Protease production reg 95.2 0.029 9.8E-07 43.1 5.3 65 60-138 52-122 (207)
82 2obp_A Putative DNA-binding pr 95.1 0.057 1.9E-06 38.5 6.3 64 59-136 19-92 (96)
83 2wte_A CSA3; antiviral protein 95.0 0.061 2.1E-06 43.3 6.8 65 57-135 153-218 (244)
84 1okr_A MECI, methicillin resis 94.9 0.026 9E-07 38.9 3.9 66 60-135 14-83 (123)
85 2qq9_A Diphtheria toxin repres 94.8 0.059 2E-06 42.1 6.1 64 60-137 10-77 (226)
86 3pqk_A Biofilm growth-associat 94.7 0.1 3.5E-06 35.3 6.5 57 60-131 27-86 (102)
87 3f8b_A Transcriptional regulat 94.7 0.03 1E-06 40.0 3.8 43 94-136 43-93 (116)
88 4aik_A Transcriptional regulat 94.5 0.082 2.8E-06 38.4 6.0 63 61-137 36-105 (151)
89 2fbk_A Transcriptional regulat 94.5 0.048 1.6E-06 40.2 4.7 62 61-136 74-144 (181)
90 1yg2_A Gene activator APHA; vi 94.5 0.15 5E-06 38.4 7.5 71 60-137 6-84 (179)
91 2b0l_A GTP-sensing transcripti 94.4 0.024 8.2E-07 40.0 2.7 51 72-136 45-97 (102)
92 3ic7_A Putative transcriptiona 94.4 0.06 2E-06 38.8 4.9 66 55-134 13-85 (126)
93 3by6_A Predicted transcription 94.3 0.14 4.9E-06 36.8 6.8 59 54-126 12-77 (126)
94 1v4r_A Transcriptional repress 94.2 0.056 1.9E-06 37.0 4.2 61 54-128 12-79 (102)
95 2ek5_A Predicted transcription 94.1 0.16 5.4E-06 36.9 6.7 64 55-132 6-76 (129)
96 2jt1_A PEFI protein; solution 93.9 0.13 4.4E-06 35.1 5.5 53 57-124 5-63 (77)
97 1mkm_A ICLR transcriptional re 93.8 0.18 6E-06 39.7 6.9 61 56-130 8-69 (249)
98 2htj_A P fimbrial regulatory p 93.8 0.1 3.5E-06 34.3 4.8 45 60-118 4-48 (81)
99 3f6v_A Possible transcriptiona 93.7 0.069 2.4E-06 39.9 4.2 62 59-135 61-125 (151)
100 3neu_A LIN1836 protein; struct 93.6 0.29 1E-05 35.0 7.4 61 54-128 14-81 (125)
101 4esb_A Transcriptional regulat 93.4 0.094 3.2E-06 37.4 4.4 67 61-136 14-88 (115)
102 2kko_A Possible transcriptiona 93.4 0.085 2.9E-06 36.6 4.0 58 60-132 29-89 (108)
103 4fx0_A Probable transcriptiona 93.3 0.12 4.1E-06 37.4 4.9 62 61-136 38-109 (148)
104 4ham_A LMO2241 protein; struct 93.3 0.13 4.3E-06 37.1 5.0 61 54-128 15-82 (134)
105 2xrn_A HTH-type transcriptiona 93.3 0.12 4E-06 40.6 5.1 61 56-130 6-68 (241)
106 1hsj_A Fusion protein consisti 93.1 0.062 2.1E-06 45.0 3.5 41 97-137 433-479 (487)
107 3f6o_A Probable transcriptiona 93.0 0.11 3.7E-06 36.4 4.1 60 60-134 22-84 (118)
108 2jsc_A Transcriptional regulat 93.0 0.19 6.5E-06 35.3 5.4 56 60-131 25-84 (118)
109 1u2w_A CADC repressor, cadmium 92.9 0.23 7.7E-06 35.1 5.7 58 60-132 46-107 (122)
110 3mq0_A Transcriptional repress 92.9 0.18 6.3E-06 40.5 5.8 58 56-127 30-88 (275)
111 3ihu_A Transcriptional regulat 92.8 0.1 3.6E-06 39.9 4.2 63 56-132 19-87 (222)
112 3hhh_A Transcriptional regulat 92.8 0.15 5.1E-06 36.5 4.7 67 61-136 18-92 (116)
113 1r1u_A CZRA, repressor protein 92.7 0.23 7.8E-06 34.0 5.4 57 60-131 30-89 (106)
114 3jth_A Transcription activator 92.7 0.23 7.8E-06 33.2 5.3 58 60-132 27-87 (98)
115 1xma_A Predicted transcription 92.6 0.095 3.2E-06 39.0 3.5 68 61-135 46-121 (145)
116 4esf_A PADR-like transcription 92.5 0.12 4E-06 37.1 3.8 67 61-136 16-90 (117)
117 1ylf_A RRF2 family protein; st 92.4 0.36 1.2E-05 35.4 6.4 57 58-128 16-75 (149)
118 1ku9_A Hypothetical protein MJ 92.3 0.36 1.2E-05 33.2 6.1 62 59-134 29-95 (152)
119 2co5_A Viral protein F93; vira 92.2 0.15 5.3E-06 35.9 4.0 42 96-137 42-86 (99)
120 3eet_A Putative GNTR-family tr 92.0 0.51 1.7E-05 38.0 7.4 60 54-127 30-96 (272)
121 3cta_A Riboflavin kinase; stru 91.9 0.1 3.5E-06 40.5 3.0 71 52-136 9-82 (230)
122 3sxy_A Transcriptional regulat 91.8 0.092 3.2E-06 40.1 2.7 62 58-133 17-84 (218)
123 2g9w_A Conserved hypothetical 91.6 0.37 1.3E-05 34.4 5.6 60 60-129 13-78 (138)
124 2o0y_A Transcriptional regulat 91.6 0.27 9.3E-06 39.0 5.3 60 56-129 23-83 (260)
125 2hs5_A Putative transcriptiona 91.5 0.14 4.9E-06 40.0 3.5 66 54-133 29-100 (239)
126 3c7j_A Transcriptional regulat 91.5 0.15 5.2E-06 40.0 3.7 49 70-132 49-97 (237)
127 2esh_A Conserved hypothetical 91.3 0.094 3.2E-06 37.1 2.1 70 60-136 17-94 (118)
128 3t8r_A Staphylococcus aureus C 91.3 0.38 1.3E-05 35.3 5.5 55 60-128 15-74 (143)
129 3elk_A Putative transcriptiona 91.2 0.13 4.3E-06 36.9 2.8 68 61-137 19-94 (117)
130 1p4x_A Staphylococcal accessor 91.1 0.25 8.7E-06 39.6 4.8 39 98-136 188-232 (250)
131 2dql_A PEX protein; circadian 91.1 0.18 6.1E-06 35.9 3.4 43 94-136 52-103 (115)
132 3r4k_A Transcriptional regulat 91.0 0.18 6E-06 40.2 3.7 58 56-127 6-65 (260)
133 1sd4_A Penicillinase repressor 90.9 0.32 1.1E-05 33.5 4.5 53 60-122 14-66 (126)
134 2d1h_A ST1889, 109AA long hypo 90.1 0.41 1.4E-05 31.4 4.4 44 61-118 26-70 (109)
135 3k69_A Putative transcription 90.1 0.52 1.8E-05 35.5 5.4 55 60-128 16-74 (162)
136 3u1d_A Uncharacterized protein 90.1 0.3 1E-05 37.4 4.1 62 60-134 33-107 (151)
137 1hw1_A FADR, fatty acid metabo 90.1 0.17 5.8E-06 38.8 2.7 58 56-127 10-74 (239)
138 2g7u_A Transcriptional regulat 90.0 0.42 1.4E-05 37.7 5.0 60 56-130 14-74 (257)
139 2lkp_A Transcriptional regulat 90.0 0.43 1.5E-05 32.8 4.6 59 60-133 36-95 (119)
140 2zfw_A PEX; five alpha-helices 89.9 0.24 8.2E-06 37.3 3.4 42 95-136 75-125 (148)
141 2di3_A Bacterial regulatory pr 89.7 0.18 6.2E-06 39.0 2.6 44 73-130 31-78 (239)
142 3l9f_A Putative uncharacterize 89.7 0.23 7.8E-06 39.1 3.2 65 68-138 47-119 (204)
143 1p6r_A Penicillinase repressor 89.6 0.32 1.1E-05 31.7 3.4 49 61-119 14-62 (82)
144 3edp_A LIN2111 protein; APC883 89.6 0.78 2.7E-05 36.0 6.3 60 54-127 10-76 (236)
145 3lwf_A LIN1550 protein, putati 88.9 0.83 2.8E-05 34.5 5.8 53 61-127 32-89 (159)
146 2heo_A Z-DNA binding protein 1 88.8 0.77 2.6E-05 29.6 4.8 46 60-119 14-60 (67)
147 2wv0_A YVOA, HTH-type transcri 88.7 1.3 4.5E-05 34.7 7.0 60 54-127 11-77 (243)
148 3ri2_A Transcriptional regulat 88.6 0.42 1.4E-05 34.7 3.7 42 95-136 49-97 (123)
149 2e1n_A PEX, period extender; c 88.2 0.28 9.6E-06 36.4 2.6 43 94-136 64-115 (138)
150 1xn7_A Hypothetical protein YH 87.4 0.85 2.9E-05 30.9 4.5 44 60-117 6-49 (78)
151 3l09_A Putative transcriptiona 87.1 0.69 2.3E-05 38.2 4.6 67 56-133 22-97 (266)
152 2k4b_A Transcriptional regulat 86.9 0.59 2E-05 32.8 3.6 51 61-122 40-90 (99)
153 3aaf_A Werner syndrome ATP-dep 86.9 2.7 9.4E-05 30.8 7.4 78 60-137 20-111 (134)
154 2ia2_A Putative transcriptiona 86.8 0.54 1.9E-05 37.3 3.8 59 56-129 21-80 (265)
155 1r1t_A Transcriptional repress 86.8 0.87 3E-05 32.3 4.5 54 60-128 50-106 (122)
156 1in4_A RUVB, holliday junction 86.3 1.4 4.8E-05 35.6 6.0 54 65-133 271-325 (334)
157 1p4x_A Staphylococcal accessor 84.8 0.99 3.4E-05 36.1 4.4 62 61-136 39-108 (250)
158 2k02_A Ferrous iron transport 84.8 1 3.6E-05 31.4 4.0 44 60-117 6-49 (87)
159 1xd7_A YWNA; structural genomi 84.1 0.93 3.2E-05 33.0 3.6 54 59-127 12-67 (145)
160 2w48_A Sorbitol operon regulat 83.6 1.7 5.9E-05 35.2 5.4 53 55-122 6-59 (315)
161 3bwg_A Uncharacterized HTH-typ 83.4 0.79 2.7E-05 35.9 3.2 42 72-127 31-72 (239)
162 3f8m_A GNTR-family protein tra 82.8 0.75 2.6E-05 36.3 2.9 59 54-127 15-78 (248)
163 2qm3_A Predicted methyltransfe 81.9 2.3 7.8E-05 35.0 5.6 57 60-134 47-103 (373)
164 2p4w_A Transcriptional regulat 80.9 1.8 6.2E-05 33.6 4.4 58 60-132 19-84 (202)
165 2rkh_A Putative APHA-like tran 79.4 0.83 2.8E-05 35.4 2.0 32 104-135 54-92 (180)
166 1i1g_A Transcriptional regulat 79.3 2.1 7.1E-05 30.0 3.9 44 60-117 8-51 (141)
167 2qlz_A Transcription factor PF 79.0 1 3.6E-05 36.0 2.5 57 60-131 16-81 (232)
168 3u5c_Z RP45, S31, YS23, 40S ri 78.5 0.87 3E-05 33.5 1.7 23 96-118 71-93 (108)
169 3r0a_A Putative transcriptiona 78.2 4.1 0.00014 28.7 5.2 44 60-117 30-75 (123)
170 2zkz_A Transcriptional repress 78.0 2.7 9.4E-05 28.3 4.1 58 60-132 31-91 (99)
171 3kfw_X Uncharacterized protein 77.6 2 6.9E-05 34.8 3.8 66 57-134 4-72 (247)
172 3iz6_V 40S ribosomal protein S 77.2 0.84 2.9E-05 33.5 1.3 22 97-118 73-94 (108)
173 2dk5_A DNA-directed RNA polyme 77.1 4.5 0.00015 27.9 5.0 41 61-115 25-67 (91)
174 3ijw_A Aminoglycoside N3-acety 77.0 0.54 1.8E-05 38.9 0.2 92 12-106 51-148 (268)
175 2fu4_A Ferric uptake regulatio 76.6 3 0.0001 26.9 3.8 52 59-119 20-73 (83)
176 3k2z_A LEXA repressor; winged 75.4 4.3 0.00015 30.5 5.0 41 68-122 21-62 (196)
177 1lva_A Selenocysteine-specific 75.0 5.1 0.00017 31.8 5.5 100 9-124 136-255 (258)
178 2ra5_A Putative transcriptiona 74.8 0.75 2.6E-05 36.3 0.6 42 72-127 42-83 (247)
179 2xzm_8 RPS25E,; ribosome, tran 72.9 2.1 7E-05 32.9 2.5 22 96-117 75-96 (143)
180 2w25_A Probable transcriptiona 72.9 6.3 0.00022 28.0 5.1 43 60-116 11-53 (150)
181 1qbj_A Protein (double-strande 72.6 7.4 0.00025 26.3 5.1 44 60-117 14-60 (81)
182 1oyi_A Double-stranded RNA-bin 72.4 3.2 0.00011 28.8 3.2 44 60-118 21-64 (82)
183 2ijl_A AGR_C_4647P, molybdenum 70.1 4.6 0.00016 29.8 3.9 37 99-135 53-96 (135)
184 3cuq_B Vacuolar protein-sortin 70.1 20 0.00067 28.4 7.8 87 9-118 113-202 (218)
185 2cfx_A HTH-type transcriptiona 69.6 8.3 0.00029 27.3 5.1 43 60-116 9-51 (144)
186 2p5v_A Transcriptional regulat 69.6 8 0.00027 27.9 5.1 43 60-116 14-56 (162)
187 2pn6_A ST1022, 150AA long hypo 69.0 5.5 0.00019 28.2 4.0 43 60-116 7-49 (150)
188 1olt_A Oxygen-independent copr 68.3 3.1 0.0001 35.5 2.9 34 103-137 405-438 (457)
189 1uly_A Hypothetical protein PH 65.9 8.2 0.00028 29.5 4.7 44 59-117 23-66 (192)
190 2vxz_A Pyrsv_GP04; viral prote 64.5 10 0.00035 29.7 4.9 55 51-120 6-60 (165)
191 2dbb_A Putative HTH-type trans 63.7 9.4 0.00032 27.0 4.4 43 60-116 13-55 (151)
192 2cyy_A Putative HTH-type trans 62.2 8.6 0.00029 27.4 3.9 43 60-116 11-53 (151)
193 3pfi_A Holliday junction ATP-d 61.9 5 0.00017 31.6 2.8 33 100-133 295-328 (338)
194 1qzz_A RDMB, aclacinomycin-10- 61.9 22 0.00077 28.2 6.7 51 67-131 46-98 (374)
195 2cg4_A Regulatory protein ASNC 61.4 12 0.00039 26.7 4.5 43 60-116 12-54 (152)
196 1qgp_A Protein (double strande 60.0 12 0.00042 24.6 4.1 44 60-117 18-64 (77)
197 1tw3_A COMT, carminomycin 4-O- 59.9 19 0.00065 28.6 6.0 50 68-131 50-99 (360)
198 2ia0_A Putative HTH-type trans 59.8 15 0.00052 27.1 5.1 43 60-116 21-63 (171)
199 1bia_A BIRA bifunctional prote 58.3 14 0.00048 30.1 5.0 57 57-127 6-63 (321)
200 1ixc_A CBNR, LYSR-type regulat 58.1 5.9 0.0002 29.4 2.5 36 99-135 30-68 (294)
201 3hhg_A Transcriptional regulat 57.8 8.9 0.0003 28.6 3.5 36 99-135 32-70 (306)
202 3i53_A O-methyltransferase; CO 56.9 35 0.0012 26.8 7.0 52 68-133 36-87 (332)
203 1b9m_A Protein (mode); DNA-bin 56.8 10 0.00036 29.0 3.8 63 56-134 22-91 (265)
204 2qc0_A Uncharacterized protein 55.9 8 0.00027 32.4 3.2 28 95-123 322-349 (373)
205 2esn_A Probable transcriptiona 53.8 10 0.00036 28.4 3.3 36 99-135 39-77 (310)
206 3szp_A Transcriptional regulat 53.1 11 0.00038 27.5 3.3 36 99-135 30-68 (291)
207 2e1c_A Putative HTH-type trans 52.8 18 0.00063 26.7 4.5 43 60-116 31-73 (171)
208 2ip2_A Probable phenazine-spec 52.4 32 0.0011 26.9 6.1 51 68-132 39-89 (334)
209 1j5y_A Transcriptional regulat 52.3 23 0.00078 26.4 5.0 58 56-128 21-80 (187)
210 3isp_A HTH-type transcriptiona 51.2 15 0.00051 27.5 3.8 35 99-135 35-72 (303)
211 1sfu_A 34L protein; protein/Z- 50.8 12 0.00041 25.6 2.9 20 99-118 44-63 (75)
212 3eqx_A FIC domain containing t 50.5 12 0.0004 31.7 3.4 48 61-123 302-349 (373)
213 3fxq_A LYSR type regulator of 50.5 16 0.00055 27.5 3.9 36 99-135 31-69 (305)
214 1hqc_A RUVB; extended AAA-ATPa 50.4 25 0.00085 27.1 5.0 50 70-133 264-313 (324)
215 3rkx_A Biotin-[acetyl-COA-carb 49.1 26 0.00088 28.9 5.2 54 60-127 7-63 (323)
216 3fzv_A Probable transcriptiona 48.6 7.5 0.00026 29.0 1.7 35 101-135 35-72 (306)
217 2gqq_A Leucine-responsive regu 48.2 5.7 0.00019 28.9 1.0 43 60-116 17-59 (163)
218 2qlz_A Transcription factor PF 47.9 22 0.00077 28.2 4.5 52 60-126 168-219 (232)
219 2v1x_A ATP-dependent DNA helic 46.8 58 0.002 28.7 7.4 78 58-135 446-536 (591)
220 2a4a_A Deoxyribose-phosphate a 46.1 15 0.00051 30.5 3.3 13 35-47 186-198 (281)
221 1z05_A Transcriptional regulat 45.3 24 0.00082 29.3 4.5 47 57-117 40-86 (429)
222 3zsu_A TLL2057 protein, cyanoq 44.5 6.4 0.00022 29.6 0.8 58 50-118 46-103 (130)
223 1z6r_A MLC protein; transcript 44.4 27 0.00094 28.6 4.7 45 59-117 19-63 (406)
224 3i4p_A Transcriptional regulat 44.1 25 0.00087 25.4 4.0 43 60-116 7-49 (162)
225 2hoe_A N-acetylglucosamine kin 43.8 19 0.00066 29.4 3.7 43 60-117 24-66 (380)
226 3ndo_A Deoxyribose-phosphate a 42.7 42 0.0014 26.9 5.4 49 12-73 144-193 (231)
227 1w7p_D VPS36P, YLR417W; ESCRT- 41.8 41 0.0014 30.6 5.7 95 8-118 453-549 (566)
228 3sma_A FRBF; N-acetyl transfer 40.7 21 0.00073 29.7 3.5 87 12-106 58-155 (286)
229 2e9x_B DNA replication complex 40.3 11 0.00037 29.5 1.5 20 18-37 47-68 (185)
230 1bm9_A RTP, TER, replication t 39.4 29 0.00098 25.6 3.6 33 98-130 54-96 (122)
231 2nyg_A YOKD protein; PFAM02522 39.1 9.5 0.00033 31.3 1.1 87 12-106 49-147 (273)
232 2h9b_A HTH-type transcriptiona 38.9 6.4 0.00022 30.0 0.0 34 101-135 32-68 (312)
233 2r3s_A Uncharacterized protein 37.4 39 0.0013 26.2 4.3 51 69-134 38-88 (335)
234 3gwz_A MMCR; methyltransferase 37.1 37 0.0013 27.5 4.3 50 68-131 69-119 (369)
235 4eiv_A Deoxyribose-phosphate a 35.6 45 0.0015 28.1 4.6 33 12-51 164-196 (297)
236 2v0f_A Chromodomain-helicase-D 35.3 3.7 0.00013 29.0 -1.7 24 16-39 38-62 (87)
237 3lcz_A YCZA, inhibitor of trap 34.5 12 0.00039 23.7 0.7 38 90-136 11-48 (53)
238 1t6s_A Conserved hypothetical 34.4 37 0.0013 25.8 3.7 45 55-116 92-137 (162)
239 3mz1_A Putative transcriptiona 34.1 8.5 0.00029 28.2 0.0 34 101-135 29-65 (300)
240 1uth_A LYSR-type regulatory pr 33.3 9 0.00031 29.3 0.0 31 103-134 47-80 (315)
241 2vn2_A DNAD, chromosome replic 32.4 31 0.001 24.3 2.7 34 71-118 52-85 (128)
242 2h98_A HTH-type transcriptiona 32.2 9.5 0.00033 29.4 0.0 34 101-135 32-68 (313)
243 1i96_V Translation initiation 31.9 26 0.00089 24.4 2.2 31 95-125 48-79 (89)
244 2xvc_A ESCRT-III, SSO0910; cel 31.6 44 0.0015 22.1 3.1 34 69-116 24-57 (59)
245 3ls0_A SLL1638 protein, PSBQ; 31.4 32 0.0011 25.8 2.8 58 50-118 49-106 (133)
246 3e97_A Transcriptional regulat 30.8 35 0.0012 24.7 2.9 42 97-141 188-229 (231)
247 2yu3_A DNA-directed RNA polyme 30.8 24 0.00082 24.8 1.9 44 61-118 42-87 (95)
248 3lst_A CALO1 methyltransferase 30.4 63 0.0021 25.7 4.6 50 68-132 53-102 (348)
249 3mcz_A O-methyltransferase; ad 30.3 57 0.0019 25.7 4.3 52 68-134 54-105 (352)
250 3iz5_o 60S ribosomal protein L 29.6 59 0.002 20.7 3.5 34 17-53 11-44 (51)
251 4a18_B RPL39, ribosomal protei 29.3 62 0.0021 20.7 3.5 34 17-53 11-44 (52)
252 2ivy_A Hypothetical protein SS 29.3 31 0.001 24.0 2.3 22 6-27 7-28 (101)
253 2gbb_A Putative chorismate mut 28.3 24 0.00082 26.6 1.7 37 12-48 104-140 (156)
254 1u3o_A Huntingtin-associated p 28.0 9.6 0.00033 26.4 -0.6 10 49-58 50-59 (82)
255 3u5e_l L46, YL40, 60S ribosoma 27.7 63 0.0022 20.6 3.3 34 17-53 11-44 (51)
256 2d48_A Interleukin-4; four hel 27.6 30 0.001 26.1 2.0 17 54-70 44-60 (129)
257 1x19_A CRTF-related protein; m 27.2 94 0.0032 24.6 5.1 51 69-134 63-113 (359)
258 3ngj_A Deoxyribose-phosphate a 27.2 68 0.0023 25.8 4.3 29 15-50 158-186 (239)
259 2f96_A Ribonuclease T; RNAse, 26.7 22 0.00077 26.8 1.2 57 54-112 159-217 (224)
260 4asn_A TUBR; transcription, tu 26.1 94 0.0032 22.1 4.3 41 96-137 46-90 (101)
261 3t7a_A Inositol pyrophosphate 25.2 33 0.0011 29.4 2.1 17 52-68 296-312 (330)
262 2k53_A A3DK08 protein; NESG, C 25.0 18 0.00061 24.1 0.3 24 6-29 46-69 (76)
263 3dp7_A SAM-dependent methyltra 24.9 1.1E+02 0.0037 24.6 5.1 57 61-132 40-97 (363)
264 3r12_A Deoxyribose-phosphate a 24.3 1.5E+02 0.005 24.2 5.8 27 14-47 173-199 (260)
265 3lmm_A Uncharacterized protein 24.2 2.5E+02 0.0087 24.9 7.8 59 59-132 433-496 (583)
266 4a6d_A Hydroxyindole O-methylt 24.2 99 0.0034 24.9 4.7 57 69-139 42-101 (353)
267 1exe_A Transcription factor 1; 23.5 1.3E+02 0.0043 20.4 4.5 26 13-38 26-51 (99)
268 1ub3_A Aldolase protein; schif 22.9 1.2E+02 0.0042 23.6 5.0 48 13-73 132-179 (220)
269 3u5c_S 40S ribosomal protein S 22.6 68 0.0023 24.2 3.2 41 6-47 57-101 (146)
270 3tvt_B PINS, partner of inscut 21.7 18 0.00061 22.9 -0.2 30 94-124 13-42 (50)
271 3exc_X Uncharacterized protein 21.7 59 0.002 22.3 2.5 22 6-27 8-29 (91)
272 3h87_C Putative uncharacterize 20.8 74 0.0025 21.5 2.8 25 1-27 1-25 (73)
273 1ft9_A Carbon monoxide oxidati 20.8 69 0.0023 23.1 2.9 22 96-117 175-196 (222)
274 1mul_A NS2, HU-2, DNA binding 20.4 52 0.0018 21.8 2.0 27 13-39 26-52 (90)
275 3i4u_A ATP-dependent RNA helic 20.4 44 0.0015 26.9 1.9 32 97-132 16-47 (270)
No 1
>3u5c_T 40S ribosomal protein S19-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_S 3o30_M 3o2z_M 3u5g_T 3jyv_T*
Probab=100.00 E-value=7.3e-76 Score=455.80 Aligned_cols=136 Identities=40% Similarity=0.753 Sum_probs=133.4
Q ss_pred CCCCccccccChhHHHHHHHHHHHHcCCCCCCCceeeeccCCCCCCCCCCCc-hhHHhHHHHHHHHHHhCCCchhhHHHH
Q 032124 1 METAKNVKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPD-WYYIRAASMARKIYLRGGLGVGSFRRI 79 (147)
Q Consensus 1 m~~~~tVkDV~~~~fI~~~A~~LK~~gki~~P~W~d~vKTg~~kElaP~~~D-W~YiRaASi~RklYl~g~vGV~~lr~~ 79 (147)
||++ ||||||||+||++||+|||++|||++|+|+||||||++||+||+||| |||+||||||||||++||+||++||++
T Consensus 1 m~~~-tvkDV~a~~fI~~~A~~LK~~gki~~P~W~d~vKTg~~kEl~P~d~D~W~Y~RaASi~R~lYl~g~vGV~~lrk~ 79 (144)
T 3u5c_T 1 MPGV-SVRDVAAQDFINAYASFLQRQGKLEVPGYVDIVKTSSGNEMPPQDAEGWFYKRAASVARHIYMRKQVGVGKLNKL 79 (144)
T ss_dssp -CCC-CSTTSCHHHHHHHHHHHHHHHCCCCCTTTTTSCCSCTTCSSCCSSCSSSHHHHHHHHHHHHHTSSBCCHHHHHHH
T ss_pred CCCC-ceeecCHHHHHHHHHHHHHHcCCCCCCchHhHhhccccccCCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 8887 99999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred hcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeChhhhhhhhhhhc
Q 032124 80 YGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVLVERLHKLDCENS 137 (147)
Q Consensus 80 YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~LDri~~ 137 (147)
|||+||||++|+||++|||+|||+||||||++|||++++++||+|||+||++||+||.
T Consensus 80 YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~g~vek~~~~GR~lT~~G~~~LD~iA~ 137 (144)
T 3u5c_T 80 YGGAKSRGVRPYKHIDASGSINRKVLQALEKIGIVEISPKGGRRISENGQRDLDRIAA 137 (144)
T ss_dssp HCCEEEETTEEEEECCCCHHHHHHHHHHHHHTTSEECCSSSSCEECHHHHHHHHHHHH
T ss_pred HCCCCCCCCCCccccccCcHHHHHHHHHHHHCCCeeecCCCCcEECHhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998999999999999999985
No 2
>2xzm_T RPS19E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_T
Probab=100.00 E-value=1.8e-74 Score=452.31 Aligned_cols=136 Identities=32% Similarity=0.629 Sum_probs=132.8
Q ss_pred CCccccccChhHHHHHHHHHHHHcCCCCCCCceeeeccCCCCCCCCCCCchhHHhHHHHHHHHHHhCCCchhhHHHHhcC
Q 032124 3 TAKNVKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGG 82 (147)
Q Consensus 3 ~~~tVkDV~~~~fI~~~A~~LK~~gki~~P~W~d~vKTg~~kElaP~~~DW~YiRaASi~RklYl~g~vGV~~lr~~YGg 82 (147)
.|+||||||||+||++||+|||++|+|++|+|+||||||++||+||+|||||||||||||||||++||+||++||++|||
T Consensus 6 ~m~tvkDV~a~~fI~~~A~~LKk~gki~~P~W~d~vKTg~~KElaP~d~DW~YiRaASi~R~lYlrg~vGV~~lrk~YGg 85 (155)
T 2xzm_T 6 SFFTVKDVAAADFIREYASHLKKANKLSIPEFTQWTTTSVARELAPQDSDWVYIRTAALARKVYLKPHTGISTLKHIFGS 85 (155)
T ss_dssp CCCCGGGSCHHHHHHHHHHHTTSSCCSCCCHHHHSCCCSSSCSSCCSSTTHHHHHHHHHHHHHHHSTTCCHHHHHHHTCC
T ss_pred CCceeeecCHHHHHHHHHHHHHhcCCCCCCchHhhhhccccccCCCCCCchHHHHHHHHHHHHhccCCCCHHHHHHHHCC
Confidence 37799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCC-----CeeeChhhhhhhhhhhcC
Q 032124 83 GKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKG-----QSLVLVERLHKLDCENSN 138 (147)
Q Consensus 83 ~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~-----GR~lT~~G~~~LDri~~~ 138 (147)
+||||++|+||++|||+|||+||||||++||||+++++ ||+|||+||+||||||..
T Consensus 86 ~krrG~~P~h~~~asg~iiR~~LQqLE~~g~Vek~~~g~~~k~GR~lT~~G~~~LDriA~~ 146 (155)
T 2xzm_T 86 NKDRGNLRNKHQACHGKILRWALKSLEDLKIIRKDKNSATKKFSRVITKEGMTELNRIATQ 146 (155)
T ss_dssp EECCSSSCCEECCCCHHHHHHHHHHHHHTTSEEECSSCSSSTTCEEECHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcccCCCcHHHHHHHHHHHHCCCEeecCCCCcCCCCCEECHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999877 999999999999999963
No 3
>3iz6_S 40S ribosomal protein S19 (S19E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=5.3e-75 Score=451.79 Aligned_cols=133 Identities=65% Similarity=1.133 Sum_probs=131.3
Q ss_pred ccccccChhHHHHHHHHHHHHcCCCCCCCceeeeccCCCCCCCCCCCchhHHhHHHHHHHHHHhCCCchhhHHHHhcCCC
Q 032124 5 KNVKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGK 84 (147)
Q Consensus 5 ~tVkDV~~~~fI~~~A~~LK~~gki~~P~W~d~vKTg~~kElaP~~~DW~YiRaASi~RklYl~g~vGV~~lr~~YGg~k 84 (147)
+||||||||+||++||+|||++|||++|+|+||||||++||+||+|||||||||||||||||++||+||++||++|||+|
T Consensus 7 ~tvkDV~a~~fI~~~A~~LK~~gki~~P~W~d~vKTg~~KEl~P~d~DW~Y~RaASi~R~lYlrg~vGV~~lrk~YGg~k 86 (146)
T 3iz6_S 7 RTVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASIARKIYLRQGIGVGGFQKIYGGRQ 86 (146)
T ss_dssp HHHHHSCHHHHHHHHHTTGGGSSCCCCTTTGGGCCSSSSCSSSTHHHHTHHHHHHHHHHHHHHHCSBCHHHHHSSSCCCC
T ss_pred CeeeecCHHHHHHHHHHHHHHcCCCCCCchHHHhhccccccCCCCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHCCCC
Confidence 39999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeChhhhhhhhhhhc
Q 032124 85 RNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVLVERLHKLDCENS 137 (147)
Q Consensus 85 rrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~LDri~~ 137 (147)
|||++|+||++|||+|||+||||||++|||||++++||+|||+||++||+||.
T Consensus 87 rrG~~P~h~~~asg~iiR~~LQqLE~~g~Vek~~~gGR~lT~~G~~~LD~iA~ 139 (146)
T 3iz6_S 87 RNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGGRLITSQGRRDLDQVAG 139 (146)
T ss_dssp CCCSSCCCCCCCCHHHHHHHHHHHHHHTSEEEETTTEEEECHHHHHHHHHHHH
T ss_pred CCCCCCCcccCCCcHHHHHHHHHHHHCCCeEecCCCCcEECHhHHHHHHHHHH
Confidence 99999999999999999999999999999999998999999999999999985
No 4
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=100.00 E-value=5.6e-53 Score=326.97 Aligned_cols=134 Identities=34% Similarity=0.565 Sum_probs=121.0
Q ss_pred CccccccChhHHHHHHHHHHHHcCCCCCCCceeeeccCCCCCCCCCCCchhHHhHHHHHHHHHHhCCCchhhHHHHhcCC
Q 032124 4 AKNVKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGG 83 (147)
Q Consensus 4 ~~tVkDV~~~~fI~~~A~~LK~~gki~~P~W~d~vKTg~~kElaP~~~DW~YiRaASi~RklYl~g~vGV~~lr~~YGg~ 83 (147)
|+||||||||+||++||+|||++|+|++|+|+||||||.++|++|+++||||.|||++||++|++|++|+..|++.|||+
T Consensus 1 m~tv~dv~~~~~i~~~a~~lk~~~ki~~P~w~~~vKt~~~ke~~p~~~~~~y~ria~~lr~~i~~g~~G~~~La~~~gg~ 80 (150)
T 2v7f_A 1 MATVYDVPGDLLVERVAQRLKEIPEIKPPEWAPFVKTGRHKERLPEQEDWWYYRVASILRRVYLDGPVGIERLRTYYGGR 80 (150)
T ss_dssp -CCGGGSCHHHHHHHHHHHHTTCTTCCCCSCGGGCCC------CHHHHTHHHHHHHHHHHHHHHHCSBCHHHHHHHHCC-
T ss_pred CCCccccCHHHHHHHHHHHHHhcCCCCCcchhhhhcccccccCCCCCcchHHHHHHHHHHHHHHhCCCCHHHHHHHHCCC
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeChhhhhhhhhhhc
Q 032124 84 KRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVLVERLHKLDCENS 137 (147)
Q Consensus 84 krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~LDri~~ 137 (147)
||||++|+||++.|+++||.|||+||++|||++.+.+|+.+|+.|+++||+|+.
T Consensus 81 k~~g~~p~~~~~vSr~tVR~AL~~Le~~GlV~~~~~~G~~Vt~~~~~~l~~ia~ 134 (150)
T 2v7f_A 81 KNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPGKGRVITPKGRSFLDKIAT 134 (150)
T ss_dssp ---CCCTTSCCCHHHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHHHHH
T ss_pred ccCCcCCccccccchHHHHHHHHHHHHCCCEEEeCCCceEECCCCHHHHHHHHH
Confidence 999999999999999999999999999999999888899999999999999985
No 5
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=97.33 E-value=0.00024 Score=48.30 Aligned_cols=69 Identities=9% Similarity=0.102 Sum_probs=54.5
Q ss_pred HHhHHHHHHHHHHhC-CCchhhHHHHhcCCCCCCCCCCCCCCCchhH-HHHHHHHhHhCCceeeCCCCCe----eeChhh
Q 032124 55 YIRAASMARKIYLRG-GLGVGSFRRIYGGGKRNGSRPPHFSKSSGSV-ARHILHQLQDTNIIELDSKGQS----LVLVER 128 (147)
Q Consensus 55 YiRaASi~RklYl~g-~vGV~~lr~~YGg~krrG~~P~h~~~asgsi-iR~~LqqLE~~glV~k~~~~GR----~lT~~G 128 (147)
.+|+..+|..|+-.+ ++.+..|+...|-. .+- +-.+|+.||+.|||+.++.++| .||++|
T Consensus 14 ~~~~l~~L~~l~~~~~~~t~~eLa~~l~is--------------~~t~vs~~l~~Le~~Glv~~~~~drR~~~~~LT~~G 79 (95)
T 2pg4_A 14 LIRILPTLLEFEKKGYEPSLAEIVKASGVS--------------EKTFFMGLKDRLIRAGLVKEETLSYRVKTLKLTEKG 79 (95)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHCCC--------------HHHHHTTHHHHHHHTTSEEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHCCC--------------chHHHHHHHHHHHHCCCeecCCCCCCeEEEEECHhH
Confidence 457777888888787 89999999988743 355 7778999999999996654444 799999
Q ss_pred hhhhhhhhc
Q 032124 129 LHKLDCENS 137 (147)
Q Consensus 129 ~~~LDri~~ 137 (147)
+..++.+..
T Consensus 80 ~~~~~~~~~ 88 (95)
T 2pg4_A 80 RRLAECLEK 88 (95)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987653
No 6
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=97.21 E-value=0.00071 Score=47.45 Aligned_cols=62 Identities=13% Similarity=0.011 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeChhhhhhhhhhh
Q 032124 58 AASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVLVERLHKLDCEN 136 (147)
Q Consensus 58 aASi~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~LDri~ 136 (147)
.+.||+.++ .+ +|...+...-|- |-+.+|+.+..||+.|||++. .+|-.||++|+..|+.+.
T Consensus 10 i~~IL~~i~-~~-~~~t~La~~~~l--------------s~~~~~~~l~~L~~~GLI~~~-~~~~~LT~kG~~~l~~l~ 71 (95)
T 1r7j_A 10 IQAILEACK-SG-SPKTRIMYGANL--------------SYALTGRYIKMLMDLEIIRQE-GKQYMLTKKGEELLEDIR 71 (95)
T ss_dssp HHHHHHHHT-TC-BCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEE-TTEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHH-cC-CCHHHHHHHhCc--------------CHHHHHHHHHHHHHCCCeEEE-CCeeEEChhHHHHHHHHH
Confidence 356888777 45 888888886553 448999999999999999998 468999999998887654
No 7
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=97.20 E-value=0.00085 Score=48.69 Aligned_cols=60 Identities=13% Similarity=0.053 Sum_probs=50.0
Q ss_pred HHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeChhhhhhhhhhh
Q 032124 63 RKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVLVERLHKLDCEN 136 (147)
Q Consensus 63 RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~LDri~ 136 (147)
..|+-.+++.+..|...+|-. .+-++.+|+.||+.|||+..+.+|-.||++|+..+..+.
T Consensus 47 ~~l~~~~~~~~~~la~~l~vs--------------~~tvs~~l~~Le~~Glv~r~~~~~~~lT~~g~~~~~~~~ 106 (155)
T 2h09_A 47 DLIREVGEARQVDMAARLGVS--------------QPTVAKMLKRLATMGLIEMIPWRGVFLTAEGEKLAQESR 106 (155)
T ss_dssp HHHHHHSCCCHHHHHHHHTSC--------------HHHHHHHHHHHHHTTCEEEETTTEEEECHHHHHHHHHHH
T ss_pred HHHHhCCCcCHHHHHHHhCcC--------------HHHHHHHHHHHHHCCCEEEecCCceEEChhHHHHHHHHH
Confidence 344446889999999998753 378999999999999999887778999999999887654
No 8
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=97.12 E-value=0.0015 Score=46.58 Aligned_cols=63 Identities=8% Similarity=-0.031 Sum_probs=50.9
Q ss_pred HHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeChhhhhhhhhhhc
Q 032124 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVLVERLHKLDCENS 137 (147)
Q Consensus 61 i~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~LDri~~ 137 (147)
|++-+.-.+++.+..|+...|- |.+-++.+|+.||+.|||+..+.++-.||++|+..+..+..
T Consensus 13 i~~l~~~~~~~~~~ela~~l~v--------------s~~tvs~~l~~Le~~Glv~r~~~~~~~LT~~g~~~~~~~~~ 75 (142)
T 1on2_A 13 IYMLIEEKGYARVSDIAEALAV--------------HPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGKRLVY 75 (142)
T ss_dssp HHHHHHHHSSCCHHHHHHHHTS--------------CHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCCHHHHHHHhCC--------------CHHHHHHHHHHHHHCCCEEEeeCceEEEchhHHHHHHHHHH
Confidence 3343444689999999998874 34788999999999999998876788999999998876543
No 9
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=97.06 E-value=0.0013 Score=46.38 Aligned_cols=64 Identities=6% Similarity=-0.018 Sum_probs=51.8
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCC--CCe----eeChhhhhhhh
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK--GQS----LVLVERLHKLD 133 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~--~GR----~lT~~G~~~LD 133 (147)
.||..|+-.+++.+..|....|-. .+-+-.+++.||+.|||++.++ ++| .||++|+..++
T Consensus 35 ~iL~~l~~~~~~t~~eLa~~l~~~--------------~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 100 (145)
T 3g3z_A 35 AVLYTLATEGSRTQKHIGEKWSLP--------------KQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYAA 100 (145)
T ss_dssp HHHHHHHHHCSBCHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCC--------------HHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHHH
Confidence 378888899999999999988743 3667789999999999997553 444 49999999988
Q ss_pred hhhc
Q 032124 134 CENS 137 (147)
Q Consensus 134 ri~~ 137 (147)
.+..
T Consensus 101 ~~~~ 104 (145)
T 3g3z_A 101 PLTE 104 (145)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7643
No 10
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=96.92 E-value=0.0026 Score=45.06 Aligned_cols=54 Identities=6% Similarity=0.048 Sum_probs=46.3
Q ss_pred hCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeChhhhhhhhhhh
Q 032124 68 RGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVLVERLHKLDCEN 136 (147)
Q Consensus 68 ~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~LDri~ 136 (147)
.+++.+..|+...|- |.+-++.+|+.||+.|||++.+ ++-.||++|+...+.+.
T Consensus 29 ~~~~s~~ela~~l~i--------------s~~tv~~~l~~Le~~Gli~r~~-~~~~Lt~~g~~~~~~~~ 82 (139)
T 2x4h_A 29 GEGAKINRIAKDLKI--------------APSSVFEEVSHLEEKGLVKKKE-DGVWITNNGTRSINYLI 82 (139)
T ss_dssp TSCBCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEET-TEEEECHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHhCC--------------ChHHHHHHHHHHHHCCCEEecC-CeEEEChhHHHHHHHHH
Confidence 578999999998874 3478999999999999999886 78899999999877654
No 11
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=96.91 E-value=0.0029 Score=43.98 Aligned_cols=63 Identities=6% Similarity=-0.017 Sum_probs=49.6
Q ss_pred HHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC--CCCe----eeChhhhhhhhh
Q 032124 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGQS----LVLVERLHKLDC 134 (147)
Q Consensus 61 i~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~~~LDr 134 (147)
|+..|+-.+++.+..|....|- +.+-+-.+++.||+.|||++.. .++| .||++|+..++.
T Consensus 39 iL~~l~~~~~~~~~~la~~l~~--------------~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~ 104 (138)
T 1jgs_A 39 VLCSIRCAACITPVELKKVLSV--------------DLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICEQ 104 (138)
T ss_dssp HHHHHHHHSSBCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHCC--------------ChHHHHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHHHHHH
Confidence 6777788899999999987763 2366778999999999998743 3444 699999999987
Q ss_pred hhc
Q 032124 135 ENS 137 (147)
Q Consensus 135 i~~ 137 (147)
+..
T Consensus 105 ~~~ 107 (138)
T 1jgs_A 105 CHQ 107 (138)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 12
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=96.91 E-value=0.0017 Score=45.76 Aligned_cols=63 Identities=6% Similarity=-0.028 Sum_probs=50.2
Q ss_pred HHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC--CCCe----eeChhhhhhhhh
Q 032124 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGQS----LVLVERLHKLDC 134 (147)
Q Consensus 61 i~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~~~LDr 134 (147)
||..|+-.+|+.+..|....|-. .+-+-.+++.||+.|||++.+ .++| .||++|+..++.
T Consensus 42 iL~~l~~~~~~t~~eLa~~l~~~--------------~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~ 107 (143)
T 3oop_A 42 VLEGIEANEPISQKEIALWTKKD--------------TPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKETTE 107 (143)
T ss_dssp HHHHHHHHSSEEHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHHHH
T ss_pred HHHHHHHcCCcCHHHHHHHHCCC--------------HhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHHHH
Confidence 67788888999999999987643 367788999999999999755 2444 499999999987
Q ss_pred hhc
Q 032124 135 ENS 137 (147)
Q Consensus 135 i~~ 137 (147)
+..
T Consensus 108 ~~~ 110 (143)
T 3oop_A 108 LRD 110 (143)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 13
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=96.89 E-value=0.0025 Score=45.31 Aligned_cols=64 Identities=16% Similarity=0.131 Sum_probs=51.0
Q ss_pred HHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceee--CC--CCCe----eeChhhhhhh
Q 032124 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIEL--DS--KGQS----LVLVERLHKL 132 (147)
Q Consensus 61 i~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k--~~--~~GR----~lT~~G~~~L 132 (147)
||..|+-.+++.+..|+...|- +.+-+-.+++.||+.|||++ .+ .++| .||++|+..+
T Consensus 46 iL~~l~~~~~~t~~eLa~~l~~--------------~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~ 111 (154)
T 2qww_A 46 MINVIYSTPGISVADLTKRLII--------------TGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLS 111 (154)
T ss_dssp HHHHHHHSTTEEHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHH
Confidence 6777888899999999998863 23667789999999999998 43 3343 5999999999
Q ss_pred hhhhcC
Q 032124 133 DCENSN 138 (147)
Q Consensus 133 Dri~~~ 138 (147)
+.+...
T Consensus 112 ~~~~~~ 117 (154)
T 2qww_A 112 KRSTAN 117 (154)
T ss_dssp HHHHSC
T ss_pred HHHHhh
Confidence 887654
No 14
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=96.75 E-value=0.0034 Score=45.93 Aligned_cols=63 Identities=8% Similarity=0.109 Sum_probs=49.8
Q ss_pred HHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC--CCCe----eeChhhhhhhhh
Q 032124 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGQS----LVLVERLHKLDC 134 (147)
Q Consensus 61 i~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~~~LDr 134 (147)
||..|+-.+++.+..|....|- +.+-+-.+++.||+.|||++.. .++| .||++|+..++.
T Consensus 50 iL~~L~~~~~~t~~eLa~~l~i--------------s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~~ 115 (168)
T 2nyx_A 50 TLVILSNHGPINLATLATLLGV--------------QPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVVRQ 115 (168)
T ss_dssp HHHHHHHHCSEEHHHHHHHHTS--------------CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHhCC--------------CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHH
Confidence 6777888899999999998864 2366777999999999998743 3344 599999999887
Q ss_pred hhc
Q 032124 135 ENS 137 (147)
Q Consensus 135 i~~ 137 (147)
+..
T Consensus 116 ~~~ 118 (168)
T 2nyx_A 116 VTE 118 (168)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 15
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=96.74 E-value=0.0032 Score=43.99 Aligned_cols=64 Identities=13% Similarity=0.181 Sum_probs=49.7
Q ss_pred HHHHHHHHhC--CCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC--CCCe----eeChhhhhh
Q 032124 60 SMARKIYLRG--GLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGQS----LVLVERLHK 131 (147)
Q Consensus 60 Si~RklYl~g--~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~~~ 131 (147)
.||..|+-.+ ++.+..|....|-. .+-+-.+++.||+.|||++.+ .++| .||++|+..
T Consensus 35 ~vL~~l~~~~~~~~t~~ela~~l~~~--------------~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~ 100 (139)
T 3eco_A 35 HTLGYLYAHQQDGLTQNDIAKALQRT--------------GPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKL 100 (139)
T ss_dssp HHHHHHHHSTTTCEEHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHH
T ss_pred HHHHHHHhcCCCCcCHHHHHHHhCCC--------------cccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHH
Confidence 3788888876 99999999988643 366778999999999998653 3454 499999999
Q ss_pred hhhhhc
Q 032124 132 LDCENS 137 (147)
Q Consensus 132 LDri~~ 137 (147)
++.+..
T Consensus 101 ~~~~~~ 106 (139)
T 3eco_A 101 VEAFTS 106 (139)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987643
No 16
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=96.71 E-value=0.0044 Score=43.53 Aligned_cols=65 Identities=12% Similarity=0.047 Sum_probs=50.6
Q ss_pred HHHHHHHHH-hCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCC--CCe----eeChhhhhh
Q 032124 59 ASMARKIYL-RGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK--GQS----LVLVERLHK 131 (147)
Q Consensus 59 ASi~RklYl-~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~--~GR----~lT~~G~~~ 131 (147)
..||..|+- .+++.+..|....|- +.+-+..+++.||+.|||++.++ ++| .||++|+..
T Consensus 38 ~~iL~~l~~~~~~~~~~~la~~l~i--------------~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~ 103 (147)
T 2hr3_A 38 LVVLGAIDRLGGDVTPSELAAAERM--------------RSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRN 103 (147)
T ss_dssp HHHHHHHHHTTSCBCHHHHHHHTTC--------------CHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHhCC--------------ChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHH
Confidence 447888888 899999999998763 33678889999999999997643 344 599999999
Q ss_pred hhhhhc
Q 032124 132 LDCENS 137 (147)
Q Consensus 132 LDri~~ 137 (147)
++.+..
T Consensus 104 ~~~~~~ 109 (147)
T 2hr3_A 104 LYGNRA 109 (147)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887653
No 17
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=96.70 E-value=0.0036 Score=45.01 Aligned_cols=63 Identities=10% Similarity=0.100 Sum_probs=49.2
Q ss_pred HHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC--CCCe----eeChhhhhhhhh
Q 032124 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGQS----LVLVERLHKLDC 134 (147)
Q Consensus 61 i~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~~~LDr 134 (147)
||..|+-.+|+.+..|....|-. .+-+-.+++.||+.|||++.+ .++| .||++|+..++.
T Consensus 55 vL~~l~~~~~~t~~eLa~~l~~~--------------~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~ 120 (159)
T 3s2w_A 55 FLMRLYREDGINQESLSDYLKID--------------KGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLEPD 120 (159)
T ss_dssp HHHHHHHSCSEEHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHCCC--------------HHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHHHH
Confidence 67777888999999999987643 367788999999999998654 3444 499999999887
Q ss_pred hhc
Q 032124 135 ENS 137 (147)
Q Consensus 135 i~~ 137 (147)
+..
T Consensus 121 ~~~ 123 (159)
T 3s2w_A 121 MKK 123 (159)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 18
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=96.70 E-value=0.004 Score=43.87 Aligned_cols=63 Identities=16% Similarity=0.192 Sum_probs=47.2
Q ss_pred HHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCC--CCe----eeChhhhhhhhh
Q 032124 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK--GQS----LVLVERLHKLDC 134 (147)
Q Consensus 61 i~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~--~GR----~lT~~G~~~LDr 134 (147)
||..|+-.+|+.+..|....|-.+ +-+-.+++.||+.|||++.++ ++| .||++|+..++.
T Consensus 42 vL~~l~~~~~~t~~eLa~~l~~~~--------------~tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~ 107 (142)
T 3ech_A 42 VLKLIDEQRGLNLQDLGRQMCRDK--------------ALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHLH 107 (142)
T ss_dssp HHHHHHHTTTCCHHHHHHHHC-----------------CHHHHHHHHHHHTTSEEC----------CCEECHHHHHHHHH
T ss_pred HHHHHHhCCCcCHHHHHHHhCCCH--------------HHHHHHHHHHHHCCCEeeccCCCCCCeeeeEECHHHHHHHHH
Confidence 788888899999999999887432 567789999999999997653 344 599999999987
Q ss_pred hhc
Q 032124 135 ENS 137 (147)
Q Consensus 135 i~~ 137 (147)
+..
T Consensus 108 ~~~ 110 (142)
T 3ech_A 108 AEL 110 (142)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 19
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=96.69 E-value=0.0017 Score=46.06 Aligned_cols=63 Identities=10% Similarity=0.019 Sum_probs=49.8
Q ss_pred HHHHHHHh--CCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC--CCCe----eeChhhhhhh
Q 032124 61 MARKIYLR--GGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGQS----LVLVERLHKL 132 (147)
Q Consensus 61 i~RklYl~--g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~~~L 132 (147)
||..|+-. +++.+..|+...|-. .+-+-.+|+.||+.|||++.+ ..+| .||++|+..+
T Consensus 42 vL~~l~~~~~~~~t~~eLa~~l~~~--------------~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~~~ 107 (127)
T 2frh_A 42 VLTYISENKEKEYYLKDIINHLNYK--------------QPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKI 107 (127)
T ss_dssp HHHHHHHTCCSEEEHHHHHHHSSSH--------------HHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHH
T ss_pred HHHHHHhccCCCcCHHHHHHHHCCC--------------HHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 67778888 889999999977632 356677899999999998743 3455 6999999999
Q ss_pred hhhhc
Q 032124 133 DCENS 137 (147)
Q Consensus 133 Dri~~ 137 (147)
+.+.+
T Consensus 108 ~~~~~ 112 (127)
T 2frh_A 108 ESLLS 112 (127)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88754
No 20
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=96.69 E-value=0.0048 Score=44.63 Aligned_cols=63 Identities=19% Similarity=0.074 Sum_probs=50.6
Q ss_pred HHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC--CCCe----eeChhhhhhhhh
Q 032124 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGQS----LVLVERLHKLDC 134 (147)
Q Consensus 61 i~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~~~LDr 134 (147)
||..|+-.+++.+..|....|-.+ +-+-.+++.||+.|||++.. ..+| .||++|+..++.
T Consensus 51 iL~~l~~~~~~t~~eLa~~l~~~~--------------~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~ 116 (162)
T 3k0l_A 51 ALSVLAAKPNLSNAKLAERSFIKP--------------QSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKLNQ 116 (162)
T ss_dssp HHHHHHHCTTCCHHHHHHHHTSCG--------------GGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHCCCH--------------HHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHHHH
Confidence 788888889999999999887432 56778999999999998654 3444 599999999987
Q ss_pred hhc
Q 032124 135 ENS 137 (147)
Q Consensus 135 i~~ 137 (147)
+..
T Consensus 117 ~~~ 119 (162)
T 3k0l_A 117 CNQ 119 (162)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 21
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=96.69 E-value=0.005 Score=42.80 Aligned_cols=62 Identities=6% Similarity=-0.041 Sum_probs=49.0
Q ss_pred HHHHHHHhC--CCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC--CCCe----eeChhhhhhh
Q 032124 61 MARKIYLRG--GLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGQS----LVLVERLHKL 132 (147)
Q Consensus 61 i~RklYl~g--~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~~~L 132 (147)
||..|+-.+ ++.+..|....|-. .+-+..+|+.||+.|||+..+ .++| .||++|+..+
T Consensus 39 iL~~l~~~~~~~~~~~ela~~l~~~--------------~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~~~ 104 (141)
T 3bro_A 39 IIDYLSRNKNKEVLQRDLESEFSIK--------------SSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLE 104 (141)
T ss_dssp HHHHHHHTTTSCCBHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTH
T ss_pred HHHHHHHCCCCCcCHHHHHHHHCCC--------------cchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHHHH
Confidence 677888887 89999999988742 367888999999999998654 2333 4899999988
Q ss_pred hhhh
Q 032124 133 DCEN 136 (147)
Q Consensus 133 Dri~ 136 (147)
+.+.
T Consensus 105 ~~~~ 108 (141)
T 3bro_A 105 TIIL 108 (141)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 22
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=96.67 E-value=0.0036 Score=45.26 Aligned_cols=63 Identities=17% Similarity=0.147 Sum_probs=49.4
Q ss_pred HHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCC--CCe----eeChhhhhhhhh
Q 032124 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK--GQS----LVLVERLHKLDC 134 (147)
Q Consensus 61 i~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~--~GR----~lT~~G~~~LDr 134 (147)
||..|+-.+++.+..|....|-. .+-+-.+++.||+.|||++..+ ++| .||++|+..++.
T Consensus 58 vL~~l~~~~~~t~~eLa~~l~~~--------------~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~ 123 (161)
T 3e6m_A 58 LLSSLSAYGELTVGQLATLGVME--------------QSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLAE 123 (161)
T ss_dssp HHHHHHHHSEEEHHHHHHHTTCC--------------HHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHCCC--------------HHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHHHH
Confidence 67777778888899998876532 3677889999999999997653 344 599999999987
Q ss_pred hhc
Q 032124 135 ENS 137 (147)
Q Consensus 135 i~~ 137 (147)
+..
T Consensus 124 ~~~ 126 (161)
T 3e6m_A 124 ISP 126 (161)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 23
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=96.67 E-value=0.0038 Score=43.67 Aligned_cols=61 Identities=10% Similarity=0.078 Sum_probs=49.4
Q ss_pred HHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCC--CCe----eeChhhhhhhhh
Q 032124 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK--GQS----LVLVERLHKLDC 134 (147)
Q Consensus 61 i~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~--~GR----~lT~~G~~~LDr 134 (147)
|+..|+ .+|+.+..|+...|- +.+-+..+|+.||+.|||++.++ ++| .||++|+..++.
T Consensus 42 iL~~l~-~~~~~~~ela~~l~~--------------s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~ 106 (146)
T 2gxg_A 42 VLRATS-DGPKTMAYLANRYFV--------------TQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETFNK 106 (146)
T ss_dssp HHHHHT-TSCBCHHHHHHHTTC--------------CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHH
T ss_pred HHHHHh-cCCcCHHHHHHHhCC--------------CchhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHHHH
Confidence 677788 999999999998763 34778889999999999986542 333 699999999887
Q ss_pred hh
Q 032124 135 EN 136 (147)
Q Consensus 135 i~ 136 (147)
+.
T Consensus 107 ~~ 108 (146)
T 2gxg_A 107 GI 108 (146)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 24
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=96.67 E-value=0.0043 Score=44.14 Aligned_cols=62 Identities=13% Similarity=0.184 Sum_probs=46.4
Q ss_pred HHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceee----CCCCCe----eeChhhhhhh
Q 032124 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIEL----DSKGQS----LVLVERLHKL 132 (147)
Q Consensus 61 i~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k----~~~~GR----~lT~~G~~~L 132 (147)
||..| -.+++.+..|+...|-.+ +-+-.+++.||+.|||+. ++.++| .||++|+..+
T Consensus 43 iL~~l-~~~~~t~~eLa~~l~~~~--------------~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~ 107 (151)
T 3kp7_A 43 VLNML-SIEALTVGQITEKQGVNK--------------AAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYI 107 (151)
T ss_dssp HHHHH-HHSCBCHHHHHHHHCSCS--------------SHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHH
T ss_pred HHHHH-HcCCcCHHHHHHHHCCCH--------------HHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHH
Confidence 67777 789999999999887432 566789999999999996 555555 5999999998
Q ss_pred hhhhc
Q 032124 133 DCENS 137 (147)
Q Consensus 133 Dri~~ 137 (147)
+.+..
T Consensus 108 ~~~~~ 112 (151)
T 3kp7_A 108 KERKA 112 (151)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87643
No 25
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=96.65 E-value=0.003 Score=44.23 Aligned_cols=63 Identities=6% Similarity=0.036 Sum_probs=49.3
Q ss_pred HHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCC--CCe----eeChhhhhhhhh
Q 032124 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK--GQS----LVLVERLHKLDC 134 (147)
Q Consensus 61 i~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~--~GR----~lT~~G~~~LDr 134 (147)
|+..|+-.+++.+..|....|-. .+-+..+|+.||+.|||+..++ ++| .||++|+..++.
T Consensus 42 iL~~l~~~~~~~~~ela~~l~~~--------------~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~ 107 (142)
T 2bv6_A 42 VLTILWDESPVNVKKVVTELALD--------------TGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIRPE 107 (142)
T ss_dssp HHHHHHHSSEEEHHHHHHHTTCC--------------TTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHHH
T ss_pred HHHHHHHcCCcCHHHHHHHHCCC--------------hhhHHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHHHHHH
Confidence 67778888899999999988642 2457789999999999986542 343 579999999987
Q ss_pred hhc
Q 032124 135 ENS 137 (147)
Q Consensus 135 i~~ 137 (147)
+..
T Consensus 108 ~~~ 110 (142)
T 2bv6_A 108 LSN 110 (142)
T ss_dssp HTT
T ss_pred HHH
Confidence 653
No 26
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=96.64 E-value=0.0024 Score=43.14 Aligned_cols=64 Identities=6% Similarity=-0.026 Sum_probs=47.5
Q ss_pred HHHHHHHHhCCCchhhH----HHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCC---CeeeChhhhhhh
Q 032124 60 SMARKIYLRGGLGVGSF----RRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKG---QSLVLVERLHKL 132 (147)
Q Consensus 60 Si~RklYl~g~vGV~~l----r~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~---GR~lT~~G~~~L 132 (147)
.||..|+-.+++.+..| ....| -+.+-+-.+|+.||+.|||++..+. .-.||++|+..+
T Consensus 12 ~iL~~l~~~~~~~~~el~~~la~~l~--------------is~~tvs~~l~~Le~~gli~r~~~~r~~~~~LT~~G~~~~ 77 (99)
T 1tbx_A 12 IVLAYLYDNEGIATYDLYKKVNAEFP--------------MSTATFYDAKKFLIQEGFVKERQERGEKRLYLTEKGKLFA 77 (99)
T ss_dssp HHHHHHTTCTTCBHHHHHHHHHTTSC--------------CCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHHHHcCCcCHHHHHHHHHHHcC--------------CCHHHHHHHHHHHHHCCCEEEEecCCceEEEECHHHHHHH
Confidence 36777777788999888 44322 2446778899999999999875432 336999999999
Q ss_pred hhhhc
Q 032124 133 DCENS 137 (147)
Q Consensus 133 Dri~~ 137 (147)
+.+..
T Consensus 78 ~~~~~ 82 (99)
T 1tbx_A 78 ISLKT 82 (99)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87643
No 27
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=96.62 E-value=0.0039 Score=43.21 Aligned_cols=64 Identities=11% Similarity=0.116 Sum_probs=50.7
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC--CCCe----eeChhhhhhhh
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGQS----LVLVERLHKLD 133 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~~~LD 133 (147)
.|+..|+-.+++.+..|....|- +.+-+..+|+.||+.|||++.+ .++| .||++|+..++
T Consensus 33 ~iL~~l~~~~~~~~~ela~~l~~--------------s~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~~ 98 (138)
T 3bpv_A 33 ACLLRIHREPGIKQDELATFFHV--------------DKGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEIIP 98 (138)
T ss_dssp HHHHHHHHSTTCBHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHHHHHH
Confidence 36777888899999999998863 3467888999999999999754 2333 59999999888
Q ss_pred hhhc
Q 032124 134 CENS 137 (147)
Q Consensus 134 ri~~ 137 (147)
.+..
T Consensus 99 ~~~~ 102 (138)
T 3bpv_A 99 LILK 102 (138)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7643
No 28
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=96.59 E-value=0.0036 Score=41.57 Aligned_cols=63 Identities=16% Similarity=0.097 Sum_probs=51.2
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCC-CCe----eeChhhhhhhhh
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK-GQS----LVLVERLHKLDC 134 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~-~GR----~lT~~G~~~LDr 134 (147)
.|+..|.-.+++.+..|....|- +.+-+..+|+.||+.|||+.... ++| .+|+.|+..++.
T Consensus 24 ~il~~l~~~~~~s~~ela~~l~i--------------s~~tv~~~l~~L~~~glv~~~~~~~~r~~~~~~t~~g~~~~~~ 89 (109)
T 1sfx_A 24 RIYSLLLERGGMRVSEIARELDL--------------SARFVRDRLKVLLKRGFVRREIVEKGWVGYIYSAEKPEKVLKE 89 (109)
T ss_dssp HHHHHHHHHCCBCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEEEESSSEEEEEEECCHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEEEeecCCceEEEEecCcHHHHHHH
Confidence 47777777899999999998863 34789999999999999987543 444 699999998876
Q ss_pred hh
Q 032124 135 EN 136 (147)
Q Consensus 135 i~ 136 (147)
+.
T Consensus 90 ~~ 91 (109)
T 1sfx_A 90 FK 91 (109)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 29
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=96.59 E-value=0.0044 Score=42.92 Aligned_cols=61 Identities=5% Similarity=0.049 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchh-HHHHHHHHhHhCCceeeCCCCCe---eeChhhhhhhh
Q 032124 58 AASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGS-VARHILHQLQDTNIIELDSKGQS---LVLVERLHKLD 133 (147)
Q Consensus 58 aASi~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgs-iiR~~LqqLE~~glV~k~~~~GR---~lT~~G~~~LD 133 (147)
...|+..|.-+||..+..|++..|-.+ . -+|..|+.||+.|+|++. ..|| .||++|+..|+
T Consensus 13 ~~~IL~~Lk~~g~~ta~eiA~~Lgit~--------------~~aVr~hL~~Le~eGlV~~~-~~gRP~w~LT~~g~~~~~ 77 (79)
T 1xmk_A 13 KEKICDYLFNVSDSSALNLAKNIGLTK--------------ARDINAVLIDMERQGDVYRQ-GTTPPIWHLTDKKRERMQ 77 (79)
T ss_dssp HHHHHHHHHHTCCEEHHHHHHHHCGGG--------------HHHHHHHHHHHHHTTSEEEE-CSSSCEEEECHHHHTTTC
T ss_pred HHHHHHHHHHcCCcCHHHHHHHcCCCc--------------HHHHHHHHHHHHHCCCEEec-CCCCCCeEeCHhHHhHhc
Confidence 346888888899999999999988543 5 799999999999999976 3466 78999998764
No 30
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=96.56 E-value=0.0065 Score=42.81 Aligned_cols=63 Identities=10% Similarity=0.131 Sum_probs=49.3
Q ss_pred HHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC--CC----CeeeChhhhhhhhh
Q 032124 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KG----QSLVLVERLHKLDC 134 (147)
Q Consensus 61 i~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~--~~----GR~lT~~G~~~LDr 134 (147)
|+..|+-.+++.+..|....|- +.+-+-.+++.||+.|||++.+ .+ .-.||++|+..++.
T Consensus 45 iL~~l~~~~~~t~~ela~~l~~--------------~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~~~ 110 (148)
T 3nrv_A 45 IISVLSSASDCSVQKISDILGL--------------DKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEV 110 (148)
T ss_dssp HHHHHHHSSSBCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHHHH
Confidence 7888888999999999998763 2367888999999999999764 22 34699999999987
Q ss_pred hhc
Q 032124 135 ENS 137 (147)
Q Consensus 135 i~~ 137 (147)
+..
T Consensus 111 ~~~ 113 (148)
T 3nrv_A 111 ASD 113 (148)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 31
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=96.56 E-value=0.0021 Score=43.71 Aligned_cols=66 Identities=12% Similarity=0.098 Sum_probs=48.8
Q ss_pred hHHHHHHHHHH-hCC---CchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCe----eeChhh
Q 032124 57 RAASMARKIYL-RGG---LGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQS----LVLVER 128 (147)
Q Consensus 57 RaASi~RklYl-~g~---vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR----~lT~~G 128 (147)
++..||-.|+- .++ +.+..|....|- +.+-+-.+|+.||+.|||. ++..+| .||++|
T Consensus 13 ~~~~iL~~l~~~~~~~~~~t~~eLa~~l~i--------------~~~tvs~~l~~Le~~Glv~-~~~d~R~~~v~LT~~G 77 (95)
T 2qvo_A 13 KALEILMTIYYESLGGNDVYIQYIASKVNS--------------PHSYVWLIIKKFEEAKMVE-CELEGRTKIIRLTDKG 77 (95)
T ss_dssp HHHHHHHHHHHHHHTTCCEEHHHHHHHSSS--------------CHHHHHHHHHHHHHTTSEE-EEEETTEEEEEECHHH
T ss_pred hHHHHHHHHHHccCCCCCcCHHHHHHHHCc--------------CHHHHHHHHHHHHHCcCcc-CCCCCCeEEEEEChhH
Confidence 44556666665 355 889999998764 3366778899999999994 444465 799999
Q ss_pred hhhhhhhhc
Q 032124 129 LHKLDCENS 137 (147)
Q Consensus 129 ~~~LDri~~ 137 (147)
+..++.+..
T Consensus 78 ~~~~~~~~~ 86 (95)
T 2qvo_A 78 QKIAQQIKS 86 (95)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987754
No 32
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=96.54 E-value=0.0046 Score=42.77 Aligned_cols=62 Identities=6% Similarity=0.082 Sum_probs=48.6
Q ss_pred HHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC--CCCe----eeChhhhhhhhh
Q 032124 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGQS----LVLVERLHKLDC 134 (147)
Q Consensus 61 i~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~~~LDr 134 (147)
|+..|+-.+++.+..|....|-. .+-+..+|+.||+.|||++.. .++| .||++|+..++.
T Consensus 38 iL~~l~~~~~~~~~ela~~l~~~--------------~~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~~~ 103 (139)
T 3bja_A 38 VIQVLAKSGKVSMSKLIENMGCV--------------PSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETKKQ 103 (139)
T ss_dssp HHHHHHHSCSEEHHHHHHHCSSC--------------CTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHH
T ss_pred HHHHHHHcCCcCHHHHHHHHCCC--------------hhHHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHHHHH
Confidence 67777888999999999987642 245677899999999998743 3343 599999999887
Q ss_pred hh
Q 032124 135 EN 136 (147)
Q Consensus 135 i~ 136 (147)
+.
T Consensus 104 ~~ 105 (139)
T 3bja_A 104 VD 105 (139)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 33
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=96.53 E-value=0.0055 Score=43.21 Aligned_cols=62 Identities=11% Similarity=0.086 Sum_probs=50.0
Q ss_pred HHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCC--CCe----eeChhhhhhhhh
Q 032124 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK--GQS----LVLVERLHKLDC 134 (147)
Q Consensus 61 i~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~--~GR----~lT~~G~~~LDr 134 (147)
|+..|+-.+++.+..|....|-. .+-+..+|+.||+.|||+...+ ++| .||++|+..++.
T Consensus 45 iL~~l~~~~~~t~~ela~~l~~~--------------~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 110 (152)
T 3bj6_A 45 ILEGLSLTPGATAPQLGAALQMK--------------RQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAIITA 110 (152)
T ss_dssp HHHHHHHSTTEEHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHCCC--------------HHHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHHHH
Confidence 67778888999999999988743 3678889999999999997642 233 599999998887
Q ss_pred hh
Q 032124 135 EN 136 (147)
Q Consensus 135 i~ 136 (147)
+.
T Consensus 111 ~~ 112 (152)
T 3bj6_A 111 IR 112 (152)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 34
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=96.51 E-value=0.007 Score=43.24 Aligned_cols=62 Identities=6% Similarity=0.024 Sum_probs=46.1
Q ss_pred HHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC--CCC----eeeChhhhhhhhh
Q 032124 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGQ----SLVLVERLHKLDC 134 (147)
Q Consensus 61 i~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~--~~G----R~lT~~G~~~LDr 134 (147)
||..|+-.+++.+..|....|- +.+-+..+|+.||+.|||++.. .++ -.||++|+..++.
T Consensus 54 iL~~l~~~~~~t~~ela~~l~i--------------s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 119 (162)
T 2fa5_A 54 VITILALYPGSSASEVSDRTAM--------------DKVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVYET 119 (162)
T ss_dssp HHHHHHHSTTCCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHHHH
Confidence 6667777788888888887763 3367888999999999999754 233 3599999999877
Q ss_pred hh
Q 032124 135 EN 136 (147)
Q Consensus 135 i~ 136 (147)
+.
T Consensus 120 ~~ 121 (162)
T 2fa5_A 120 VA 121 (162)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 35
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=96.51 E-value=0.0077 Score=43.05 Aligned_cols=63 Identities=6% Similarity=0.016 Sum_probs=49.8
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC--CCCe----eeChhhhhhhh
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGQS----LVLVERLHKLD 133 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~~~LD 133 (147)
.||..|+-.+++.+..|....|- +.+-+-.+|+.||+.|||++.. .++| .||++|+..++
T Consensus 48 ~iL~~l~~~~~~t~~ela~~l~i--------------s~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~ 113 (154)
T 2eth_A 48 YAFLYVALFGPKKMKEIAEFLST--------------TKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFG 113 (154)
T ss_dssp HHHHHHHHHCCBCHHHHHHHTTS--------------CHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHHHHHH
Confidence 46778888899999999998763 3367788999999999998643 3344 58999999988
Q ss_pred hhh
Q 032124 134 CEN 136 (147)
Q Consensus 134 ri~ 136 (147)
.+.
T Consensus 114 ~~~ 116 (154)
T 2eth_A 114 EIL 116 (154)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 36
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=96.47 E-value=0.0054 Score=42.44 Aligned_cols=63 Identities=8% Similarity=0.103 Sum_probs=49.9
Q ss_pred HHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC--CCCe----eeChhhhhhhhh
Q 032124 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGQS----LVLVERLHKLDC 134 (147)
Q Consensus 61 i~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~~~LDr 134 (147)
|+..|+-.+++.+..|....|- +.+-+-.+|+.||+.|||++.+ .++| .||++|+..++.
T Consensus 43 iL~~l~~~~~~t~~ela~~l~~--------------~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 108 (140)
T 2nnn_A 43 ALVRLGETGPCPQNQLGRLTAM--------------DAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAELEA 108 (140)
T ss_dssp HHHHHHHHSSBCHHHHHHHTTC--------------CHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHHHH
Confidence 7788888899999999998763 3367788999999999999753 2333 599999999887
Q ss_pred hhc
Q 032124 135 ENS 137 (147)
Q Consensus 135 i~~ 137 (147)
+..
T Consensus 109 ~~~ 111 (140)
T 2nnn_A 109 GLA 111 (140)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 37
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=96.47 E-value=0.0037 Score=44.59 Aligned_cols=63 Identities=6% Similarity=0.091 Sum_probs=48.1
Q ss_pred HHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC--CCCe----eeChhhhhhhhh
Q 032124 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGQS----LVLVERLHKLDC 134 (147)
Q Consensus 61 i~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~~~LDr 134 (147)
||..|+-.+|+.+..|....|-. .+-+-.+++.||+.|||++.+ .++| .||++|+..++.
T Consensus 46 iL~~l~~~~~~~~~eLa~~l~~~--------------~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~ 111 (149)
T 4hbl_A 46 VMLTLWEENPQTLNSIGRHLDLS--------------SNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQEA 111 (149)
T ss_dssp HHHHHHHSSSEEHHHHHHHHTCC--------------HHHHHHHHHHHHHHTSEEC---------CEEEECSHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHCCC--------------HHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHHHH
Confidence 67788888999999999988643 367778999999999999764 3454 499999999887
Q ss_pred hhc
Q 032124 135 ENS 137 (147)
Q Consensus 135 i~~ 137 (147)
+..
T Consensus 112 ~~~ 114 (149)
T 4hbl_A 112 VFE 114 (149)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 38
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=96.46 E-value=0.0031 Score=44.61 Aligned_cols=64 Identities=6% Similarity=-0.054 Sum_probs=49.6
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCC--CCe----eeChhhhhhhh
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK--GQS----LVLVERLHKLD 133 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~--~GR----~lT~~G~~~LD 133 (147)
.||..|+-.+++.+..|+...|- +.+-+-.+++.||+.|||++.++ ++| .||++|+..++
T Consensus 40 ~vL~~l~~~~~~t~~eLa~~l~~--------------~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 105 (140)
T 3hsr_A 40 IVLMAIENDEKLNIKKLGERVFL--------------DSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKS 105 (140)
T ss_dssp HHHHHSCTTCEEEHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTHH
T ss_pred HHHHHHHHcCCcCHHHHHHHHCC--------------ChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHHH
Confidence 37778888899999999998764 34677889999999999997652 344 58999999988
Q ss_pred hhhc
Q 032124 134 CENS 137 (147)
Q Consensus 134 ri~~ 137 (147)
.+..
T Consensus 106 ~~~~ 109 (140)
T 3hsr_A 106 PLAE 109 (140)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 39
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=96.45 E-value=0.0079 Score=42.31 Aligned_cols=63 Identities=10% Similarity=0.106 Sum_probs=48.9
Q ss_pred HHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC--CCCe----eeChhhhhhhhh
Q 032124 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGQS----LVLVERLHKLDC 134 (147)
Q Consensus 61 i~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~~~LDr 134 (147)
||..|+-.+++.+..|....|- +.+-+-.+|+.||+.|||+... .++| .||++|+..++.
T Consensus 47 iL~~l~~~~~~t~~ela~~l~~--------------~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 112 (150)
T 2rdp_A 47 ALQWLLEEGDLTVGELSNKMYL--------------ACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERIIEE 112 (150)
T ss_dssp HHHHHHHHCSBCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHCC--------------CchhHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHHHH
Confidence 6777888899999999998863 3366788999999999998653 2343 599999999887
Q ss_pred hhc
Q 032124 135 ENS 137 (147)
Q Consensus 135 i~~ 137 (147)
+..
T Consensus 113 ~~~ 115 (150)
T 2rdp_A 113 VIE 115 (150)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 40
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=96.44 E-value=0.0035 Score=44.43 Aligned_cols=63 Identities=21% Similarity=0.273 Sum_probs=43.4
Q ss_pred HHHHHHHh--CCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC--CCCee----eChhhhhhh
Q 032124 61 MARKIYLR--GGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGQSL----VLVERLHKL 132 (147)
Q Consensus 61 i~RklYl~--g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~--~~GR~----lT~~G~~~L 132 (147)
||..|+-. +++.+..|+...|-. .+-+-.+++.||+.|||++.+ .++|. ||++|+..+
T Consensus 46 vL~~l~~~~~~~~t~~eLa~~l~~~--------------~~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~ 111 (148)
T 3jw4_A 46 MIGYIYENQESGIIQKDLAQFFGRR--------------GASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALV 111 (148)
T ss_dssp HHHHHHHHTTTCCCHHHHHHC--------------------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHH
T ss_pred HHHHHHhCCCCCCCHHHHHHHHCCC--------------hhHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHH
Confidence 67778877 789999999876532 245668999999999998764 24553 999999998
Q ss_pred hhhhc
Q 032124 133 DCENS 137 (147)
Q Consensus 133 Dri~~ 137 (147)
+.+..
T Consensus 112 ~~~~~ 116 (148)
T 3jw4_A 112 EEFNN 116 (148)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87653
No 41
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=96.43 E-value=0.0042 Score=43.17 Aligned_cols=63 Identities=14% Similarity=0.012 Sum_probs=49.1
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCC--CC----eeeChhhhhhhh
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK--GQ----SLVLVERLHKLD 133 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~--~G----R~lT~~G~~~LD 133 (147)
.|++.|+ .||..+..|....+ .-|.+.+-..|+.||+.|||++... ++ -.||++|+..++
T Consensus 29 ~IL~~L~-~~~~~~~eL~~~l~-------------gis~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~~ 94 (107)
T 2fsw_A 29 LIIFQIN-RRIIRYGELKRAIP-------------GISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPLGEKVLP 94 (107)
T ss_dssp HHHHHHT-TSCEEHHHHHHHST-------------TCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHTTHH
T ss_pred HHHHHHH-hCCcCHHHHHHHcc-------------cCCHHHHHHHHHHHHHCCCEEEeecCCCCCeeEEEECccHHHHHH
Confidence 3777777 88999999998764 1345889999999999999986542 23 379999999887
Q ss_pred hhh
Q 032124 134 CEN 136 (147)
Q Consensus 134 ri~ 136 (147)
.+.
T Consensus 95 ~l~ 97 (107)
T 2fsw_A 95 IID 97 (107)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 42
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=96.43 E-value=0.0049 Score=42.77 Aligned_cols=64 Identities=11% Similarity=0.018 Sum_probs=50.5
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC--CCCe----eeChhhhhhhh
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGQS----LVLVERLHKLD 133 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~~~LD 133 (147)
.|+..|+-.+++.+..|....|- +.+-+..+|+.||+.|||++.+ .++| .||++|+..++
T Consensus 40 ~iL~~l~~~~~~t~~ela~~l~~--------------s~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 105 (142)
T 2fbi_A 40 RVIRILRQQGEMESYQLANQACI--------------LRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFV 105 (142)
T ss_dssp HHHHHHHHHCSEEHHHHHHHTTC--------------CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCC--------------CHhHHHHHHHHHHHCCCEEeecCCCCCCeeEEEECHHHHHHHH
Confidence 37788888899999999998753 3367888999999999998754 2344 49999999988
Q ss_pred hhhc
Q 032124 134 CENS 137 (147)
Q Consensus 134 ri~~ 137 (147)
.+..
T Consensus 106 ~~~~ 109 (142)
T 2fbi_A 106 SMSG 109 (142)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7643
No 43
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=96.42 E-value=0.0058 Score=43.80 Aligned_cols=62 Identities=15% Similarity=0.088 Sum_probs=49.0
Q ss_pred HHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC--CCCe----eeChhhhhhhhh
Q 032124 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGQS----LVLVERLHKLDC 134 (147)
Q Consensus 61 i~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~~~LDr 134 (147)
||..|+-.+++.+..|....|-. .+-+..+|+.||+.|||++.. .++| .||++|+..++.
T Consensus 57 iL~~l~~~~~~t~~ela~~l~is--------------~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~ 122 (162)
T 3cjn_A 57 ALAILSAKDGLPIGTLGIFAVVE--------------QSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVYDR 122 (162)
T ss_dssp HHHHHHHSCSEEHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHCCC--------------hhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHH
Confidence 67777878899999999987632 367888999999999998753 2333 599999999887
Q ss_pred hh
Q 032124 135 EN 136 (147)
Q Consensus 135 i~ 136 (147)
+.
T Consensus 123 ~~ 124 (162)
T 3cjn_A 123 LW 124 (162)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 44
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=96.39 E-value=0.0045 Score=43.10 Aligned_cols=63 Identities=8% Similarity=0.016 Sum_probs=48.9
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCC--CC----eeeChhhhhhhh
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK--GQ----SLVLVERLHKLD 133 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~--~G----R~lT~~G~~~LD 133 (147)
.||+.|+ .||..+..|..... .-|.+.+-..|+.||+.|||++... ++ -.||++|+..++
T Consensus 18 ~IL~~L~-~~~~~~~eLa~~l~-------------~is~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~G~~l~~ 83 (107)
T 2hzt_A 18 VILXHLT-HGKKRTSELKRLMP-------------NITQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLEG 83 (107)
T ss_dssp HHHHHHT-TCCBCHHHHHHHCT-------------TSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHH
T ss_pred HHHHHHH-hCCCCHHHHHHHhc-------------CCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECccHHHHHH
Confidence 3777777 89999999998751 2355889999999999999986542 23 489999999877
Q ss_pred hhh
Q 032124 134 CEN 136 (147)
Q Consensus 134 ri~ 136 (147)
.+.
T Consensus 84 ~~~ 86 (107)
T 2hzt_A 84 ILD 86 (107)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 45
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=96.39 E-value=0.0065 Score=42.58 Aligned_cols=61 Identities=7% Similarity=0.010 Sum_probs=47.2
Q ss_pred HHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCC--CCe----eeChhhhhhhhh
Q 032124 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK--GQS----LVLVERLHKLDC 134 (147)
Q Consensus 61 i~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~--~GR----~lT~~G~~~LDr 134 (147)
||..|+-.+ +.+..|+...|-. .+-+..+|+.||+.|||++.++ ++| .||++|+..+..
T Consensus 43 iL~~l~~~~-~t~~eLa~~l~~s--------------~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~~~ 107 (146)
T 3tgn_A 43 ILMLLSEES-LTNSELARRLNVS--------------QAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPIAEE 107 (146)
T ss_dssp HHHHHTTCC-CCHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEC----------CCEECGGGHHHHHH
T ss_pred HHHHHHhCC-CCHHHHHHHHCCC--------------HHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHHHHH
Confidence 778888777 9999999998743 3788999999999999997652 444 499999999887
Q ss_pred hh
Q 032124 135 EN 136 (147)
Q Consensus 135 i~ 136 (147)
+.
T Consensus 108 ~~ 109 (146)
T 3tgn_A 108 HH 109 (146)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 46
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=96.38 E-value=0.0053 Score=43.08 Aligned_cols=63 Identities=6% Similarity=0.010 Sum_probs=49.5
Q ss_pred HHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCC--CCe----eeChhhhhhhhh
Q 032124 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK--GQS----LVLVERLHKLDC 134 (147)
Q Consensus 61 i~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~--~GR----~lT~~G~~~LDr 134 (147)
|+..|+-.+++.+..|+...|- +.+-+..+|+.||+.|||++.++ ++| .||++|+..++.
T Consensus 45 iL~~l~~~~~~~~~~la~~l~~--------------~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~~~~~ 110 (147)
T 1z91_A 45 ALLLLWEHETLTVKKMGEQLYL--------------DSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKEK 110 (147)
T ss_dssp HHHHHHHHSEEEHHHHHHTTTC--------------CHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGGG
T ss_pred HHHHHHHCCCCCHHHHHHHHCC--------------CcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHHH
Confidence 6777888889999999987642 34678889999999999997643 333 589999999987
Q ss_pred hhc
Q 032124 135 ENS 137 (147)
Q Consensus 135 i~~ 137 (147)
+..
T Consensus 111 ~~~ 113 (147)
T 1z91_A 111 AVD 113 (147)
T ss_dssp TTT
T ss_pred HHH
Confidence 643
No 47
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=96.37 E-value=0.0098 Score=50.16 Aligned_cols=67 Identities=9% Similarity=-0.036 Sum_probs=51.6
Q ss_pred hHHHHHH-----HHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCC-CeeeChhh-h
Q 032124 57 RAASMAR-----KIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKG-QSLVLVER-L 129 (147)
Q Consensus 57 RaASi~R-----klYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~-GR~lT~~G-~ 129 (147)
|-..|++ .|--.+|||+..|.+.|+= .-|..-||.-|..||++|++++...+ ||.-|.+| +
T Consensus 18 R~~~IL~~i~~~yl~~~~pV~s~~La~~~~l------------~VS~aTIRrDL~~LE~~GlL~r~HgsAgript~~g~r 85 (338)
T 1stz_A 18 RQRKVLYCIVREYIENKKPVSSQRVLEVSNI------------EFSSATIRNDMKKLEYLGYIYQPHTSAGRIPTDKGLR 85 (338)
T ss_dssp HHHHHHHHHHHHHHHHCSCBCHHHHHHHSCC------------CSCHHHHHHHHHHHHHTTSEECCSSCSCBEECHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCccHHHHHHHhCC------------CCCHHHHHHHHHHHHHCCCEEEccCcceecCCcccch
Confidence 7777887 4444699999999998741 23668999999999999999987644 68889888 4
Q ss_pred hhhhhh
Q 032124 130 HKLDCE 135 (147)
Q Consensus 130 ~~LDri 135 (147)
...|+.
T Consensus 86 ~yvd~l 91 (338)
T 1stz_A 86 FYYEEM 91 (338)
T ss_dssp HHHHHH
T ss_pred hhhhhh
Confidence 445543
No 48
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=96.36 E-value=0.0088 Score=42.46 Aligned_cols=63 Identities=6% Similarity=0.006 Sum_probs=48.3
Q ss_pred HHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCC--CCe----eeChhhhhhhhh
Q 032124 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK--GQS----LVLVERLHKLDC 134 (147)
Q Consensus 61 i~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~--~GR----~lT~~G~~~LDr 134 (147)
|+..|+-.+++.+..|....|- +.+-+..+|+.||+.|||++..+ ++| .||++|+..++.
T Consensus 52 iL~~l~~~~~~t~~ela~~l~~--------------s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 117 (153)
T 2pex_A 52 VMLVLWETDERSVSEIGERLYL--------------DSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRALRSK 117 (153)
T ss_dssp HHHHHHHSCSEEHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHGGGG
T ss_pred HHHHHHhCCCcCHHHHHHHhCC--------------CcccHHHHHHHHHHCCCEeecCCcccCCeeEeeECHHHHHHHHH
Confidence 6777777889999999988763 34678889999999999997642 333 589999999887
Q ss_pred hhc
Q 032124 135 ENS 137 (147)
Q Consensus 135 i~~ 137 (147)
+..
T Consensus 118 ~~~ 120 (153)
T 2pex_A 118 AGA 120 (153)
T ss_dssp STT
T ss_pred HHH
Confidence 653
No 49
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=96.34 E-value=0.0046 Score=43.35 Aligned_cols=63 Identities=14% Similarity=0.185 Sum_probs=49.0
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCC--CC----eeeChhhhhhhh
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK--GQ----SLVLVERLHKLD 133 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~--~G----R~lT~~G~~~LD 133 (147)
.||+.|+ .|++.+..|..... .-+.+.+-..|+.||+.|||++... ++ -.||++|+..++
T Consensus 26 ~IL~~L~-~~~~~~~eLa~~l~-------------~is~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~~LT~~G~~~~~ 91 (112)
T 1z7u_A 26 SLMDELF-QGTKRNGELMRALD-------------GITQRVLTDRLREMEKDGLVHRESFNELPPRVEYTLTPEGYALYD 91 (112)
T ss_dssp HHHHHHH-HSCBCHHHHHHHST-------------TCCHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHHHHHHH
T ss_pred HHHHHHH-hCCCCHHHHHHHhc-------------cCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECHhHHHHHH
Confidence 4778887 69999999999761 2345788999999999999986542 23 378999998877
Q ss_pred hhh
Q 032124 134 CEN 136 (147)
Q Consensus 134 ri~ 136 (147)
.+.
T Consensus 92 ~~~ 94 (112)
T 1z7u_A 92 ALS 94 (112)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 50
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=96.32 E-value=0.0085 Score=41.87 Aligned_cols=62 Identities=6% Similarity=0.037 Sum_probs=49.6
Q ss_pred HHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC--CCCe----eeChhhhhhhhh
Q 032124 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGQS----LVLVERLHKLDC 134 (147)
Q Consensus 61 i~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~~~LDr 134 (147)
|+..|+-.+++.+..|....|- |.+-+-.+|+.||+.|||+... .++| .||++|+..++.
T Consensus 34 iL~~l~~~~~~t~~~la~~l~~--------------s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~ 99 (144)
T 1lj9_A 34 YLVRVCENPGIIQEKIAELIKV--------------DRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPI 99 (144)
T ss_dssp HHHHHHHSTTEEHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHH
T ss_pred HHHHHHHCcCcCHHHHHHHHCC--------------CHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHHHH
Confidence 6777888899999999998864 3467888999999999998754 2343 599999999887
Q ss_pred hh
Q 032124 135 EN 136 (147)
Q Consensus 135 i~ 136 (147)
+.
T Consensus 100 ~~ 101 (144)
T 1lj9_A 100 IV 101 (144)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 51
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=96.31 E-value=0.0082 Score=44.10 Aligned_cols=63 Identities=11% Similarity=0.018 Sum_probs=47.1
Q ss_pred HHHHHHH-hCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCC--CCe----eeChhhhhhhh
Q 032124 61 MARKIYL-RGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK--GQS----LVLVERLHKLD 133 (147)
Q Consensus 61 i~RklYl-~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~--~GR----~lT~~G~~~LD 133 (147)
||..|+- .+++.+..|....|-. .+-+-.+++.||+.|||++..+ ++| .||++|+..++
T Consensus 58 vL~~L~~~~~~~t~~eLa~~l~i~--------------~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~ 123 (166)
T 3deu_A 58 TLHNIHQLPPDQSQIQLAKAIGIE--------------QPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIA 123 (166)
T ss_dssp HHHHHHHSCSSEEHHHHHHHHTSC--------------HHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHCCC--------------HhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHHH
Confidence 6777776 6778899998887643 3677789999999999997653 444 49999999998
Q ss_pred hhhc
Q 032124 134 CENS 137 (147)
Q Consensus 134 ri~~ 137 (147)
.+..
T Consensus 124 ~~~~ 127 (166)
T 3deu_A 124 EMEE 127 (166)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 52
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=96.30 E-value=0.0076 Score=42.05 Aligned_cols=63 Identities=13% Similarity=0.232 Sum_probs=50.3
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC--CCCe----eeChhhhhhhh
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGQS----LVLVERLHKLD 133 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~~~LD 133 (147)
.|+..|+-.+++.+..|....|- +.+-+..+|+.||+.|||+..+ .++| .||++|+..++
T Consensus 37 ~iL~~l~~~~~~~~~~la~~l~~--------------s~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~~ 102 (145)
T 2a61_A 37 DILQKIYFEGPKRPGELSVLLGV--------------AKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIE 102 (145)
T ss_dssp HHHHHHHHHCCBCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCC--------------CchhHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHHHH
Confidence 36777888899999999998763 3367888999999999999754 2333 69999999988
Q ss_pred hhh
Q 032124 134 CEN 136 (147)
Q Consensus 134 ri~ 136 (147)
.+.
T Consensus 103 ~~~ 105 (145)
T 2a61_A 103 KVI 105 (145)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 53
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=96.30 E-value=0.0067 Score=47.34 Aligned_cols=56 Identities=9% Similarity=0.062 Sum_probs=47.6
Q ss_pred hCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeChhhhhhhhhhhc
Q 032124 68 RGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVLVERLHKLDCENS 137 (147)
Q Consensus 68 ~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~LDri~~ 137 (147)
.+++.+..|+...|-. .+-+..+|+.||+.|||+..+.++=.||++|+.....+..
T Consensus 18 ~~~~~~~~lA~~l~vs--------------~~tvs~~l~~Le~~GlV~r~~~~~i~LT~~G~~~~~~~~~ 73 (214)
T 3hrs_A 18 HNKITNKEIAQLMQVS--------------PPAVTEMMKKLLAEELLIKDKKAGYLLTDLGLKLVSDLYR 73 (214)
T ss_dssp CSCCCHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCC--------------hhHHHHHHHHHHHCCCEEEecCCCeEECHHHHHHHHHHHH
Confidence 4688899999987753 3678899999999999999887888999999998877654
No 54
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=96.25 E-value=0.01 Score=42.21 Aligned_cols=63 Identities=5% Similarity=-0.004 Sum_probs=47.4
Q ss_pred HHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCC--CCe----eeChhhhhhhhh
Q 032124 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK--GQS----LVLVERLHKLDC 134 (147)
Q Consensus 61 i~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~--~GR----~lT~~G~~~LDr 134 (147)
||..|+-.+++.+..|....|- +.+-+-.+|+.||+.|||++..+ ++| .||++|+..++.
T Consensus 48 iL~~l~~~~~~t~~ela~~l~i--------------~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 113 (155)
T 3cdh_A 48 VLACLVDNDAMMITRLAKLSLM--------------EQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALAES 113 (155)
T ss_dssp HHHHHSSCSCBCHHHHHHHTTC--------------CHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHHHH
T ss_pred HHHHHHHCCCcCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHHHHH
Confidence 6777777788889999887653 33667789999999999997642 333 599999999887
Q ss_pred hhc
Q 032124 135 ENS 137 (147)
Q Consensus 135 i~~ 137 (147)
+..
T Consensus 114 ~~~ 116 (155)
T 3cdh_A 114 LVA 116 (155)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 55
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=96.24 E-value=0.0096 Score=41.24 Aligned_cols=61 Identities=10% Similarity=0.033 Sum_probs=48.9
Q ss_pred HHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCC--CCe----eeChhhhhhh-h
Q 032124 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK--GQS----LVLVERLHKL-D 133 (147)
Q Consensus 61 i~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~--~GR----~lT~~G~~~L-D 133 (147)
|+..|+-.+++.+..|....|- |.+-+..+|+.||+.|||++.+. ++| .||++|+..+ +
T Consensus 36 iL~~l~~~~~~~~~ela~~l~i--------------s~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~~~ 101 (142)
T 3bdd_A 36 ILQTLLKDAPLHQLALQERLQI--------------DRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREALIT 101 (142)
T ss_dssp HHHHHHHHCSBCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHTT
T ss_pred HHHHHHhCCCCCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHH
Confidence 7788888899999999998763 33678889999999999986642 233 5999999998 5
Q ss_pred hh
Q 032124 134 CE 135 (147)
Q Consensus 134 ri 135 (147)
.+
T Consensus 102 ~~ 103 (142)
T 3bdd_A 102 NP 103 (142)
T ss_dssp SC
T ss_pred HH
Confidence 43
No 56
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=96.23 E-value=0.012 Score=40.90 Aligned_cols=62 Identities=8% Similarity=0.052 Sum_probs=48.3
Q ss_pred HHHHH-HHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCC--CC----eeeChhhhhhhh
Q 032124 61 MARKI-YLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK--GQ----SLVLVERLHKLD 133 (147)
Q Consensus 61 i~Rkl-Yl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~--~G----R~lT~~G~~~LD 133 (147)
|+..| +-.+++.+..|....|- +.+-+..+++.||+.|||+..++ ++ -.||++|+..++
T Consensus 42 iL~~l~~~~~~~t~~~la~~l~~--------------s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 107 (146)
T 2fbh_A 42 VLLHLARHRDSPTQRELAQSVGV--------------EGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLIA 107 (146)
T ss_dssp HHHHHHHCSSCCBHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHhCC--------------ChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHHHHH
Confidence 66677 45789999999998763 33678889999999999997652 33 368999999988
Q ss_pred hhh
Q 032124 134 CEN 136 (147)
Q Consensus 134 ri~ 136 (147)
.+.
T Consensus 108 ~~~ 110 (146)
T 2fbh_A 108 DIE 110 (146)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
No 57
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=96.20 E-value=0.0098 Score=43.20 Aligned_cols=66 Identities=17% Similarity=0.090 Sum_probs=51.9
Q ss_pred HHHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeChhhhhhhhhhh
Q 032124 59 ASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVLVERLHKLDCEN 136 (147)
Q Consensus 59 ASi~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~LDri~ 136 (147)
-.||..|--+|+..+..|..... -| -|..-+++-|+.||+.|+|+....+=-.||++|++.|....
T Consensus 16 ~~IL~~L~~~g~~s~~eLA~~l~----~g--------iS~~aVs~rL~~Le~~GLV~~~~rg~Y~LT~~G~~~l~~~~ 81 (111)
T 3b73_A 16 DRILEIIHEEGNGSPKELEDRDE----IR--------ISKSSVSRRLKKLADHDLLQPLANGVYVITEEGEAYLNGEY 81 (111)
T ss_dssp HHHHHHHHHHSCBCHHHHHTSTT----CC--------SCHHHHHHHHHHHHHTTSEEECSTTCEEECHHHHHHHTTCE
T ss_pred HHHHHHHHHcCCCCHHHHHHHHh----cC--------CCHHHHHHHHHHHHHCCCEEecCCceEEECchHHHHHHHHH
Confidence 45787777779999999998651 01 24578999999999999999875444799999999987643
No 58
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=96.19 E-value=0.0091 Score=40.45 Aligned_cols=54 Identities=15% Similarity=-0.012 Sum_probs=45.5
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeChhhhh
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVLVERLH 130 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~~G~~ 130 (147)
.|++.| .+++.+..|....|- |.+-+++.|+.||+.|+|+... +.-.||+.|+.
T Consensus 35 ~Il~~L--~~~~~~~eLa~~l~i--------------s~~tv~~~L~~L~~~Glv~~~~-g~y~l~~~g~~ 88 (96)
T 1y0u_A 35 KILRML--DKGRSEEEIMQTLSL--------------SKKQLDYHLKVLEAGFCIERVG-ERWVVTDAGKI 88 (96)
T ss_dssp HHHHHH--HTTCCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEET-TEEEECTTTCC
T ss_pred HHHHHH--cCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEEC-CEEEECCCchH
Confidence 477777 899999999998864 3478999999999999999876 67789998864
No 59
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=96.18 E-value=0.0071 Score=42.78 Aligned_cols=62 Identities=15% Similarity=0.089 Sum_probs=49.5
Q ss_pred HHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCC--CC----eeeChhhhhhhhh
Q 032124 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK--GQ----SLVLVERLHKLDC 134 (147)
Q Consensus 61 i~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~--~G----R~lT~~G~~~LDr 134 (147)
||..|+-.+++.+..|....|- +.+-+..+|+.||+.|||++.++ ++ -.||++|+..++.
T Consensus 42 iL~~l~~~~~~t~~ela~~l~~--------------s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 107 (155)
T 1s3j_A 42 VLASLKKHGSLKVSEIAERMEV--------------KPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFEE 107 (155)
T ss_dssp HHHHHHHHSEEEHHHHHHHHTS--------------CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHHHH
Confidence 6777888899999999998863 33678889999999999987542 23 3699999998876
Q ss_pred hh
Q 032124 135 EN 136 (147)
Q Consensus 135 i~ 136 (147)
+.
T Consensus 108 ~~ 109 (155)
T 1s3j_A 108 VL 109 (155)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 60
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=96.14 E-value=0.0092 Score=44.02 Aligned_cols=61 Identities=11% Similarity=0.136 Sum_probs=48.7
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCC-----CeeeChhhhhhhhh
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKG-----QSLVLVERLHKLDC 134 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~-----GR~lT~~G~~~LDr 134 (147)
.||+.|+ .|+..++.|.+..|- |.+.+-..|+.||+.|||++.... .-.||++|+..+..
T Consensus 28 ~IL~~L~-~g~~~~~eLa~~lgi--------------s~~tls~~L~~Le~~GlI~r~~~~~d~~~~y~LT~~G~~l~~~ 92 (146)
T 2f2e_A 28 LIVRDAF-EGLTRFGEFQKSLGL--------------AKNILAARLRNLVEHGVMVAVPAESGSHQEYRLTDKGRALFPL 92 (146)
T ss_dssp HHHHHHH-TTCCSHHHHHHHHCC--------------CHHHHHHHHHHHHHTTSEEEEECSSSSCEEEEECHHHHTTHHH
T ss_pred HHHHHHH-hCCCCHHHHHHHhCC--------------CHHHHHHHHHHHHHCCCEEEEecCCCCeEEEEECchHHHHHHH
Confidence 3788886 799999999997653 458899999999999999976532 34799999987654
Q ss_pred h
Q 032124 135 E 135 (147)
Q Consensus 135 i 135 (147)
+
T Consensus 93 l 93 (146)
T 2f2e_A 93 L 93 (146)
T ss_dssp H
T ss_pred H
Confidence 4
No 61
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=96.14 E-value=0.0088 Score=39.61 Aligned_cols=64 Identities=5% Similarity=-0.022 Sum_probs=48.9
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC--CCC----eeeChhhhhhhh
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGQ----SLVLVERLHKLD 133 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~--~~G----R~lT~~G~~~LD 133 (147)
.|+..|+-.++..+..|....|- |.+-+-..|+.||+.|+|+... ..+ -.||++|+..+.
T Consensus 20 ~iL~~L~~~~~~~~~ela~~l~i--------------s~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~~~~~ 85 (100)
T 1ub9_A 20 GIMIFLLPRRKAPFSQIQKVLDL--------------TPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEAK 85 (100)
T ss_dssp HHHHHHHHHSEEEHHHHHHHTTC--------------CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHHH
T ss_pred HHHHHHHhcCCcCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHHHHHH
Confidence 47888887899999999998753 3467888999999999998533 122 358999988776
Q ss_pred hhhc
Q 032124 134 CENS 137 (147)
Q Consensus 134 ri~~ 137 (147)
...+
T Consensus 86 ~~~~ 89 (100)
T 1ub9_A 86 RFLS 89 (100)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 62
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=96.12 E-value=0.0092 Score=43.34 Aligned_cols=63 Identities=10% Similarity=0.062 Sum_probs=47.8
Q ss_pred HHHHHHHh--CCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC--CCCe----eeChhhhhhh
Q 032124 61 MARKIYLR--GGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGQS----LVLVERLHKL 132 (147)
Q Consensus 61 i~RklYl~--g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~~~L 132 (147)
||..|+-. +++.+..|....|-. .+-+-.+++.||+.|||++.. .++| .||++|+..+
T Consensus 51 vL~~l~~~~~~~~t~~eLa~~l~~~--------------~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~ 116 (168)
T 3u2r_A 51 TLRLLRSVHPEGMATLQIADRLISR--------------APDITRLIDRLDDRGLVLRTRKPENRRVVEVALTDAGLKLL 116 (168)
T ss_dssp HHHHHHHHTTSCEEHHHHHHHC-----------------CTHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHhcCCCCcCHHHHHHHHCCC--------------hhhHHHHHHHHHHCCCEeecCCCCCCCeeEeEECHHHHHHH
Confidence 67778885 489999999987533 256778999999999999754 3344 4999999999
Q ss_pred hhhhc
Q 032124 133 DCENS 137 (147)
Q Consensus 133 Dri~~ 137 (147)
+.+..
T Consensus 117 ~~~~~ 121 (168)
T 3u2r_A 117 KDLEE 121 (168)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 63
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=96.11 E-value=0.013 Score=41.51 Aligned_cols=63 Identities=10% Similarity=0.050 Sum_probs=45.1
Q ss_pred HHHHHHHhC-CCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCC--CCe----eeChhhhhhhh
Q 032124 61 MARKIYLRG-GLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK--GQS----LVLVERLHKLD 133 (147)
Q Consensus 61 i~RklYl~g-~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~--~GR----~lT~~G~~~LD 133 (147)
||..|+-.+ ++.+..|....|-. .+-+-.+++.||+.|||++.++ ++| .||++|+..++
T Consensus 44 vL~~l~~~~~~~t~~eLa~~l~i~--------------~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 109 (150)
T 3fm5_A 44 VLVLACEQAEGVNQRGVAATMGLD--------------PSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLRD 109 (150)
T ss_dssp HHHHHHHSTTCCCSHHHHHHHTCC--------------HHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHHH
T ss_pred HHHHHHhCCCCcCHHHHHHHHCCC--------------HhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHHH
Confidence 666676554 77888898887632 3667789999999999997553 343 59999999998
Q ss_pred hhhc
Q 032124 134 CENS 137 (147)
Q Consensus 134 ri~~ 137 (147)
.+..
T Consensus 110 ~~~~ 113 (150)
T 3fm5_A 110 DAKA 113 (150)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 64
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=96.09 E-value=0.01 Score=40.54 Aligned_cols=62 Identities=16% Similarity=0.056 Sum_probs=49.6
Q ss_pred HHHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCe----eeChhhhhhhhh
Q 032124 59 ASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQS----LVLVERLHKLDC 134 (147)
Q Consensus 59 ASi~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR----~lT~~G~~~LDr 134 (147)
..|++.| ..||+.+..|....|- |.+-++..|+.||+.|+|+...+ || .||++|...+..
T Consensus 24 ~~IL~~L-~~~~~~~~ela~~l~i--------------s~~tv~~~l~~L~~~gli~~~~~-gr~~~y~l~~~~~~~~~~ 87 (114)
T 2oqg_A 24 WEILTEL-GRADQSASSLATRLPV--------------SRQAIAKHLNALQACGLVESVKV-GREIRYRALGAELNKTAR 87 (114)
T ss_dssp HHHHHHH-HHSCBCHHHHHHHSSS--------------CHHHHHHHHHHHHHTTSEEEEEE-TTEEEEEECSHHHHHHHH
T ss_pred HHHHHHH-HcCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCeeEEec-CCEEEEEechHHHHHHHH
Confidence 3478877 6899999999998752 44789999999999999987654 44 799999877655
Q ss_pred hh
Q 032124 135 EN 136 (147)
Q Consensus 135 i~ 136 (147)
..
T Consensus 88 ~~ 89 (114)
T 2oqg_A 88 TL 89 (114)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 65
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=95.98 E-value=0.0096 Score=44.15 Aligned_cols=63 Identities=13% Similarity=0.038 Sum_probs=49.6
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCC--CCe----eeChhhhhhhh
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK--GQS----LVLVERLHKLD 133 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~--~GR----~lT~~G~~~LD 133 (147)
.||+.|. .|+...+.|++.-. .-|.+.+-..|+.||+.|||++... ..| .||++|++++.
T Consensus 30 ~IL~~L~-~g~~rf~eL~~~l~-------------gIs~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y~LT~~G~~l~~ 95 (131)
T 4a5n_A 30 ILFYHMI-DGKKRFNEFRRICP-------------SITQRMLTLQLRELEADGIVHREVYHQVPPKVEYSLTEFGRTLEP 95 (131)
T ss_dssp HHHHHHT-TSCBCHHHHHHHCT-------------TSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHH
T ss_pred HHHHHHh-cCCcCHHHHHHHhc-------------ccCHHHHHHHHHHHHHCCCEEEEecCCCCCeEEEEECHhHHHHHH
Confidence 4778887 89999999998752 2355899999999999999997642 223 69999999887
Q ss_pred hhh
Q 032124 134 CEN 136 (147)
Q Consensus 134 ri~ 136 (147)
.+.
T Consensus 96 ~l~ 98 (131)
T 4a5n_A 96 IVL 98 (131)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 66
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=95.95 E-value=0.0086 Score=42.27 Aligned_cols=63 Identities=11% Similarity=0.098 Sum_probs=49.7
Q ss_pred HHHHHHHHhCCCc--hhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCC--CCeeeChhhhhhhhhh
Q 032124 60 SMARKIYLRGGLG--VGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK--GQSLVLVERLHKLDCE 135 (147)
Q Consensus 60 Si~RklYl~g~vG--V~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~--~GR~lT~~G~~~LDri 135 (147)
.|++.|. .||.. ++.|.+... .-|.+.+-..|+.||+.|||++... .--.||++|+..+..+
T Consensus 31 ~IL~~L~-~g~~~~~~~eL~~~l~-------------gis~~~ls~~L~~Le~~GlV~r~~~r~~~y~LT~~G~~l~~~l 96 (111)
T 3df8_A 31 LIISVLG-NGSTRQNFNDIRSSIP-------------GISSTILSRRIKDLIDSGLVERRSGQITTYALTEKGMNVRNSL 96 (111)
T ss_dssp HHHHHHT-SSSSCBCHHHHHHTST-------------TCCHHHHHHHHHHHHHTTSEEEEESSSEEEEECHHHHHHHHHH
T ss_pred HHHHHHh-cCCCCCCHHHHHHHcc-------------CCCHHHHHHHHHHHHHCCCEEEeecCcEEEEECccHHHHHHHH
Confidence 4788887 88988 999998651 2355889999999999999997642 3458999999988765
Q ss_pred h
Q 032124 136 N 136 (147)
Q Consensus 136 ~ 136 (147)
.
T Consensus 97 ~ 97 (111)
T 3df8_A 97 M 97 (111)
T ss_dssp H
T ss_pred H
Confidence 4
No 67
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=95.87 E-value=0.012 Score=38.99 Aligned_cols=61 Identities=20% Similarity=0.232 Sum_probs=47.0
Q ss_pred HHHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCC---eeeChhhhhhhh
Q 032124 59 ASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQ---SLVLVERLHKLD 133 (147)
Q Consensus 59 ASi~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~G---R~lT~~G~~~LD 133 (147)
..|+..|.-.+++.+..|....|- |.+-+...|+.||+.|+|+...++. -.||++|...+-
T Consensus 27 ~~il~~l~~~~~~s~~ela~~l~i--------------s~~tvs~~l~~L~~~glv~~~~~~r~~~y~l~~~~~~~l~ 90 (99)
T 3cuo_A 27 LLILCMLSGSPGTSAGELTRITGL--------------SASATSQHLARMRDEGLIDSQRDAQRILYSIKNEAVNAII 90 (99)
T ss_dssp HHHHHHHTTCCSEEHHHHHHHHCC--------------CHHHHHHHHHHHHHTTSEEEEECSSCEEEEECCHHHHHHH
T ss_pred HHHHHHHHhCCCcCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHHHHHHH
Confidence 347777766669999999998873 3478999999999999999876432 268999866543
No 68
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=95.84 E-value=0.0014 Score=54.41 Aligned_cols=64 Identities=20% Similarity=0.179 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeChhhhhhhhhh
Q 032124 57 RAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVLVERLHKLDCE 135 (147)
Q Consensus 57 RaASi~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~LDri 135 (147)
|-..||+.||..+++++..|...+|-. ..-||..|+.||+.|+|+... .|=.||++|+..+..+
T Consensus 21 r~~~iL~~l~~~~~~t~~eLa~~l~vs--------------~~Tv~r~l~~Le~~Glv~~~~-~gi~LT~~G~~~~~~~ 84 (345)
T 2o0m_A 21 ERFQILRNIYWMQPIGRRSLSETMGIT--------------ERVLRTETDVLKQLNLIEPSK-SGMTLTERGLEVYQGL 84 (345)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCcC--------------HHHHHHHHHHHHHCCCEEEEe-cceEEcHHHHHHHHHH
Confidence 455699999999999999999988753 368999999999999998543 5789999999766544
No 69
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=95.80 E-value=0.015 Score=42.12 Aligned_cols=63 Identities=5% Similarity=0.046 Sum_probs=46.1
Q ss_pred HHHHHHHh--CCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC--CCCe----eeChhhhhhh
Q 032124 61 MARKIYLR--GGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGQS----LVLVERLHKL 132 (147)
Q Consensus 61 i~RklYl~--g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~~~L 132 (147)
+|..||.. ||+.++.|....|-.+ +-+=.++..||+.|||++.+ ..+| .||++|+..+
T Consensus 40 vL~~L~~~~~~~~t~~eLa~~l~~~~--------------~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~ 105 (147)
T 4b8x_A 40 ALVLLTFSKSGELPMSKIGERLMVHP--------------TSVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKGREVV 105 (147)
T ss_dssp HHHHHHTSGGGEEEHHHHHHHHTCCH--------------HHHHHHHHHHHHTTSEEEEECC----CEEEEECHHHHHHH
T ss_pred HHHHHHHCCCCCcCHHHHHHHHCCCH--------------HHHHHHHHHHHhCCCEEEeecCCcCceeEEEECHHHHHHH
Confidence 66777763 5788899999877533 55666999999999998654 3454 4899999999
Q ss_pred hhhhc
Q 032124 133 DCENS 137 (147)
Q Consensus 133 Dri~~ 137 (147)
+.+..
T Consensus 106 ~~~~~ 110 (147)
T 4b8x_A 106 EAATR 110 (147)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87653
No 70
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=95.78 E-value=0.024 Score=45.39 Aligned_cols=55 Identities=16% Similarity=0.130 Sum_probs=45.7
Q ss_pred hCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeChhhhhhhhhhhc
Q 032124 68 RGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVLVERLHKLDCENS 137 (147)
Q Consensus 68 ~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~LDri~~ 137 (147)
.+|+|...|+..-|- |-+.+|.+++.|++.|||+..+ +|=.||++|++....+..
T Consensus 28 ~~~V~~~~LA~~Lgv--------------S~~SV~~~lkkL~e~GLV~~~~-~Gv~LTe~G~~~A~~i~~ 82 (200)
T 2p8t_A 28 KEPLGRKQISERLEL--------------GEGSVRTLLRKLSHLDIIRSKQ-RGHFLTLKGKEIRDKLLS 82 (200)
T ss_dssp TSCBCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEC---CEEECHHHHHHHHHHHT
T ss_pred cCCccHHHHHHHhCC--------------CHHHHHHHHHHHHHCCCEEEeC-CCeEECHHHHHHHHHHHH
Confidence 589999999998883 3478999999999999999887 899999999977765543
No 71
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=95.78 E-value=0.021 Score=42.78 Aligned_cols=63 Identities=8% Similarity=0.045 Sum_probs=49.8
Q ss_pred HHHHHHH--hCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC--CCCe----eeChhhhhhh
Q 032124 61 MARKIYL--RGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGQS----LVLVERLHKL 132 (147)
Q Consensus 61 i~RklYl--~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~~~L 132 (147)
||..|+- .+++.+..|+...|-. .+-+-.+++.||+.|||++.. ..+| .||++|+..+
T Consensus 46 vL~~L~~~~~~~~t~~eLa~~l~is--------------~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~ 111 (189)
T 3nqo_A 46 TILSILHLPEEETTLNNIARKMGTS--------------KQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVM 111 (189)
T ss_dssp HHHHHHHSCGGGCCHHHHHHHHTSC--------------HHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHH
T ss_pred HHHHHHhccCCCcCHHHHHHHHCCC--------------HHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHH
Confidence 6777887 6799999999988643 366778999999999998654 3444 5999999999
Q ss_pred hhhhc
Q 032124 133 DCENS 137 (147)
Q Consensus 133 Dri~~ 137 (147)
+.+..
T Consensus 112 ~~~~~ 116 (189)
T 3nqo_A 112 VTCSR 116 (189)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 72
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=95.76 E-value=0.016 Score=40.70 Aligned_cols=62 Identities=8% Similarity=-0.017 Sum_probs=48.4
Q ss_pred HHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCC--CCe----eeChhhhhhhhh
Q 032124 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK--GQS----LVLVERLHKLDC 134 (147)
Q Consensus 61 i~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~--~GR----~lT~~G~~~LDr 134 (147)
||..|+-.++ .+..|+...|-. .+-+-.+++.||+.|||++.++ ++| .||++|+..++.
T Consensus 42 iL~~l~~~~~-~~~~la~~l~~~--------------~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~ 106 (144)
T 3f3x_A 42 ILKATSEEPR-SMVYLANRYFVT--------------QSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVLLE 106 (144)
T ss_dssp HHHHHHHSCE-EHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHH
T ss_pred HHHHHHHCCC-CHHHHHHHHCCC--------------hhHHHHHHHHHHHCCCEEeccCCCCCceEEEEECHHHHHHHHH
Confidence 6777787887 899999987643 3667789999999999987643 333 599999999887
Q ss_pred hhc
Q 032124 135 ENS 137 (147)
Q Consensus 135 i~~ 137 (147)
+..
T Consensus 107 ~~~ 109 (144)
T 3f3x_A 107 ANE 109 (144)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 73
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=95.73 E-value=0.0098 Score=41.04 Aligned_cols=53 Identities=9% Similarity=0.115 Sum_probs=42.2
Q ss_pred HHHHHHHHHhC-CCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeC----CCCCeeeC
Q 032124 59 ASMARKIYLRG-GLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELD----SKGQSLVL 125 (147)
Q Consensus 59 ASi~RklYl~g-~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~----~~~GR~lT 125 (147)
..|+..++-.| ++.+..|+..+|-. .+-+|.+|+.|++.|+|+.. +.+|+.+.
T Consensus 21 l~Il~~l~~~g~~~s~~eLa~~lgvs--------------~~tV~~~L~~L~~~GlV~~~~~~~~~~g~~v~ 78 (110)
T 1q1h_A 21 IDVLRILLDKGTEMTDEEIANQLNIK--------------VNDVRKKLNLLEEQGFVSYRKTRDKDSGWFIY 78 (110)
T ss_dssp HHHHHHHHHHCSCBCHHHHHHTTTSC--------------HHHHHHHHHHHHHHTSCEEEEEC---CCCCEE
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCcC--------------HHHHHHHHHHHHHCCCEEEEecccCCCceEEE
Confidence 45888888777 89999999988754 38899999999999999987 66675544
No 74
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=95.67 E-value=0.035 Score=39.41 Aligned_cols=59 Identities=10% Similarity=0.096 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHh---CCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC--CCCeeeChhhh
Q 032124 57 RAASMARKIYLR---GGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGQSLVLVERL 129 (147)
Q Consensus 57 RaASi~RklYl~---g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~--~~GR~lT~~G~ 129 (147)
+|..|+..|..+ +|+.+..|+..+|- |.+.+|++|++|+++|||+... .||..|+....
T Consensus 10 ~al~iL~~la~~~~~~~~s~~ela~~~~i--------------~~~~v~~il~~L~~~Glv~~~~g~~ggy~L~~~~~ 73 (129)
T 2y75_A 10 YGLTIMIELAKKHGEGPTSLKSIAQTNNL--------------SEHYLEQLVSPLRNAGLVKSIRGAYGGYVLGSEPD 73 (129)
T ss_dssp HHHHHHHHHHHTTTSCCBCHHHHHHHTTS--------------CHHHHHHHHHHHHHTTSEEEC----CCEEESSCGG
T ss_pred HHHHHHHHHHhCCCCCcCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCceEecCCCCCceEeCCCHH
Confidence 466678878774 57899999998764 3489999999999999999764 37888887543
No 75
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=95.66 E-value=0.016 Score=41.28 Aligned_cols=63 Identities=8% Similarity=0.102 Sum_probs=46.0
Q ss_pred HHHHHH-HhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCC--CCe----eeChhhhhhhh
Q 032124 61 MARKIY-LRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK--GQS----LVLVERLHKLD 133 (147)
Q Consensus 61 i~RklY-l~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~--~GR----~lT~~G~~~LD 133 (147)
||..|+ -.+++.+..|....|-.+ +-+-.+++.||+.|||++.++ ++| .||++|+..++
T Consensus 52 iL~~L~~~~~~~~~~ela~~l~i~~--------------~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~ 117 (160)
T 3boq_A 52 AMAQLARNPDGLSMGKLSGALKVTN--------------GNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTFK 117 (160)
T ss_dssp HHHHHHHCTTCEEHHHHHHHCSSCC--------------SCHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHCCCh--------------hhHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHHHHH
Confidence 677775 468899999999875332 456678999999999997642 333 59999999988
Q ss_pred hhhc
Q 032124 134 CENS 137 (147)
Q Consensus 134 ri~~ 137 (147)
.+..
T Consensus 118 ~~~~ 121 (160)
T 3boq_A 118 QASE 121 (160)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7643
No 76
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=95.51 E-value=0.021 Score=40.92 Aligned_cols=64 Identities=13% Similarity=0.098 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhCCCchhhHHH-HhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeChhhhhhhhhhh
Q 032124 58 AASMARKIYLRGGLGVGSFRR-IYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVLVERLHKLDCEN 136 (147)
Q Consensus 58 aASi~RklYl~g~vGV~~lr~-~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~LDri~ 136 (147)
-.|||++|+-+++..+..|+. .-+-. .+.+=..++-||+.|||+.+. ++=.||++|+..+...+
T Consensus 18 QfsiL~~L~~~~~~t~~~Lae~~l~~d--------------rstvsrnl~~L~r~GlVe~~~-~Dl~LT~~G~~~l~~a~ 82 (95)
T 1bja_A 18 TATILITIAKKDFITAAEVREVHPDLG--------------NAVVNSNIGVLIKKGLVEKSG-DGLIITGEAQDIISNAA 82 (95)
T ss_dssp HHHHHHHHHHSTTBCHHHHHHTCTTSC--------------HHHHHHHHHHHHTTTSEEEET-TEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHhccc--------------HHHHHHHHHHHHHCCCeecCC-CCeeeCHhHHHHHHHHH
Confidence 368999999999999999998 53332 256666789999999999443 35679999999887654
No 77
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=95.42 E-value=0.013 Score=42.81 Aligned_cols=63 Identities=14% Similarity=0.070 Sum_probs=48.4
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCC--CC----eeeChhhhhhhh
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK--GQ----SLVLVERLHKLD 133 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~--~G----R~lT~~G~~~LD 133 (147)
.||+.|+ .|+..+..|....+ .-|.+.+-..|+.||+.|||++... .+ -.||++|+..+.
T Consensus 39 ~IL~~L~-~g~~~~~eLa~~l~-------------gis~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~~ 104 (131)
T 1yyv_A 39 LILVALR-DGTHRFSDLRRXMG-------------GVSEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQVSD 104 (131)
T ss_dssp HHHHHGG-GCCEEHHHHHHHST-------------TCCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHHHHHHH
T ss_pred HHHHHHH-cCCCCHHHHHHHhc-------------cCCHHHHHHHHHHHHHCCcEEEEecCCCCCeEEEEECccHHHHHH
Confidence 3677777 89999999998762 1355889999999999999986542 23 369999998776
Q ss_pred hhh
Q 032124 134 CEN 136 (147)
Q Consensus 134 ri~ 136 (147)
.+.
T Consensus 105 ~l~ 107 (131)
T 1yyv_A 105 XVA 107 (131)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 78
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=95.36 E-value=0.011 Score=41.50 Aligned_cols=66 Identities=8% Similarity=-0.050 Sum_probs=45.1
Q ss_pred HHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCC--CCe-----eeChhhhhhhh
Q 032124 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK--GQS-----LVLVERLHKLD 133 (147)
Q Consensus 61 i~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~--~GR-----~lT~~G~~~LD 133 (147)
||..|. .+|.--..+.+.... +..-|.+.+-.+|+.||+.|||+.... +|| .||++|+..++
T Consensus 14 IL~~L~-~~~~~gyel~~~l~~----------~~~i~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~~~l~ 82 (108)
T 3l7w_A 14 ILAIVS-KHDSYGYDISQTIKL----------IASIKESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEKHLV 82 (108)
T ss_dssp HHHHHH-HSCEEHHHHHHHHTT----------TCCCCHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHHHHHH
T ss_pred HHHHHH-cCCCcHHHHHHHHHH----------HhCCCcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHHHHHH
Confidence 555555 356544445554432 234567889999999999999986532 454 49999999988
Q ss_pred hhhc
Q 032124 134 CENS 137 (147)
Q Consensus 134 ri~~ 137 (147)
...+
T Consensus 83 ~~~~ 86 (108)
T 3l7w_A 83 YLTK 86 (108)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7543
No 79
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=95.29 E-value=0.036 Score=43.24 Aligned_cols=53 Identities=6% Similarity=0.062 Sum_probs=43.8
Q ss_pred CCch--hhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeChhhhhhhhhhh
Q 032124 70 GLGV--GSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVLVERLHKLDCEN 136 (147)
Q Consensus 70 ~vGV--~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~LDri~ 136 (147)
++.+ ..|+...|- |.+-+..+|+.||+.|||+..++++=.||++|+..+..+.
T Consensus 22 ~~~~~~~~La~~l~v--------------s~~tvs~~l~~Le~~GlV~r~~~~~v~LT~~G~~~~~~~~ 76 (230)
T 1fx7_A 22 GVTPLRARIAERLDQ--------------SGPTVSQTVSRMERDGLLRVAGDRHLELTEKGRALAIAVM 76 (230)
T ss_dssp TSCCCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEECTTSCEEECHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEeCCccEEECHHHHHHHHHHH
Confidence 5656 888887753 3377889999999999999988778899999999987654
No 80
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=95.27 E-value=0.07 Score=37.61 Aligned_cols=64 Identities=16% Similarity=0.149 Sum_probs=49.4
Q ss_pred hHHhHHHHHHHHHHhCCC-------chhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeCh
Q 032124 54 YYIRAASMARKIYLRGGL-------GVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVLV 126 (147)
Q Consensus 54 ~YiRaASi~RklYl~g~v-------GV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~ 126 (147)
.|-..+.-++..-+.|.. .+..|+..||- |..-+|.+|+.||+.|+|+..+..|-.+++
T Consensus 10 ~~~~i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~v--------------Sr~tvr~al~~L~~~Gli~~~~~~G~~V~~ 75 (113)
T 3tqn_A 10 IYQQLRDKIVEAIIDGSYVEGEMIPSIRKISTEYQI--------------NPLTVSKAYQSLLDDNVIEKRRGLGMLVKA 75 (113)
T ss_dssp HHHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEETTTEEEECT
T ss_pred HHHHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEecCCeEEEeC
Confidence 456666666666666532 57789999875 448999999999999999998888999988
Q ss_pred hhhhh
Q 032124 127 ERLHK 131 (147)
Q Consensus 127 ~G~~~ 131 (147)
....+
T Consensus 76 ~~~~~ 80 (113)
T 3tqn_A 76 GARQR 80 (113)
T ss_dssp THHHH
T ss_pred CchHH
Confidence 76543
No 81
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=95.20 E-value=0.029 Score=43.14 Aligned_cols=65 Identities=9% Similarity=0.052 Sum_probs=50.3
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCC--CCe----eeChhhhhhhh
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK--GQS----LVLVERLHKLD 133 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~--~GR----~lT~~G~~~LD 133 (147)
.||..|+-.+++.+..|....|-. .+-+-.+|+.||+.|||++..+ ++| .||++|+..++
T Consensus 52 ~iL~~L~~~~~~t~~eLa~~l~i~--------------~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~ 117 (207)
T 2fxa_A 52 HILWIAYQLNGASISEIAKFGVMH--------------VSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVFW 117 (207)
T ss_dssp HHHHHHHHHTSEEHHHHHHHTTCC--------------HHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHHH
T ss_pred HHHHHHHHCCCcCHHHHHHHHCCC--------------HHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHHHH
Confidence 377888888999999999987642 3667779999999999987653 344 59999999998
Q ss_pred hhhcC
Q 032124 134 CENSN 138 (147)
Q Consensus 134 ri~~~ 138 (147)
.+...
T Consensus 118 ~~~~~ 122 (207)
T 2fxa_A 118 SLLEE 122 (207)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87643
No 82
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=95.11 E-value=0.057 Score=38.53 Aligned_cols=64 Identities=13% Similarity=0.003 Sum_probs=48.7
Q ss_pred HHHHHHHHHh------CCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCC-CCe---eeChhh
Q 032124 59 ASMARKIYLR------GGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK-GQS---LVLVER 128 (147)
Q Consensus 59 ASi~RklYl~------g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~-~GR---~lT~~G 128 (147)
-++++.|... +++-...|++.-+- +.+-+++.|..||+.|||+.... .|| .||++|
T Consensus 19 ~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l--------------~~stLsR~l~rLe~~GLV~r~~~~D~R~~v~LT~~G 84 (96)
T 2obp_A 19 VEVLLVLREAGIENGATPWSLPKIAKRAQL--------------PMSVLRRVLTQLQAAGLADVSVEADGRGHASLTQEG 84 (96)
T ss_dssp HHHHHHHHHHTSSTTCCCCBHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEECTTSCEEEEECHHH
T ss_pred HHHHHHHHHHHhhCCCCCcCHHHHHHHhCC--------------chhhHHHHHHHHHHCCCEEeecCCCCceeEEECHHH
Confidence 3577777766 67777888876543 45899999999999999986442 344 699999
Q ss_pred hhhhhhhh
Q 032124 129 LHKLDCEN 136 (147)
Q Consensus 129 ~~~LDri~ 136 (147)
+..+..-.
T Consensus 85 ~~~l~~~~ 92 (96)
T 2obp_A 85 AALAAQLF 92 (96)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhc
Confidence 99987643
No 83
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=94.96 E-value=0.061 Score=43.34 Aligned_cols=65 Identities=12% Similarity=0.188 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCC-CCeeeChhhhhhhhhh
Q 032124 57 RAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK-GQSLVLVERLHKLDCE 135 (147)
Q Consensus 57 RaASi~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~-~GR~lT~~G~~~LDri 135 (147)
....||..|.-++++.+..|++..|- +.+-+...|+.||+.|+|++... +.-.||++|+......
T Consensus 153 ~~~~IL~~L~~~~~~s~~eLA~~lgl--------------sksTv~r~L~~Le~~GlV~r~~r~~~~~LT~~G~~l~~~~ 218 (244)
T 2wte_A 153 EEMKLLNVLYETKGTGITELAKMLDK--------------SEKTLINKIAELKKFGILTQKGKDRKVELNELGLNVIKLN 218 (244)
T ss_dssp HHHHHHHHHHHHTCBCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEETTTTEEEECHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEeCCccEEEECHHHHHHHHHH
Confidence 45568888888999999999999874 34778889999999999998643 3468999999987653
No 84
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=94.86 E-value=0.026 Score=38.93 Aligned_cols=66 Identities=11% Similarity=0.090 Sum_probs=50.2
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCe----eeChhhhhhhhhh
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQS----LVLVERLHKLDCE 135 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR----~lT~~G~~~LDri 135 (147)
.||..|+-.+|+.+..|....|-. .+ -+.+-+-.+|+.||+.|||++.+++.| .||++|+..++.+
T Consensus 14 ~vL~~l~~~~~~t~~ela~~l~~~--~~--------~s~~tv~~~l~~L~~~Glv~r~~~~rr~~~~~lT~~g~~~~~~~ 83 (123)
T 1okr_A 14 EVMNIIWMKKYASANNIIEEIQMQ--KD--------WSPKTIRTLITRLYKKGFIDRKKDNKIFQYYSLVEESDIKYKTS 83 (123)
T ss_dssp HHHHHHHHHSSEEHHHHHHHHHHH--CC--------CCHHHHHHHHHHHHHHTSEEEEEETTEEEEEESSCHHHHHHHHH
T ss_pred HHHHHHHhCCCcCHHHHHHHHhcc--CC--------CcHhhHHHHHHHHHHCCCeEEEecCCeEEEEEecCHHHHHHHHH
Confidence 367777778999999999988742 22 244778899999999999998765333 3799999876544
No 85
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=94.78 E-value=0.059 Score=42.09 Aligned_cols=64 Identities=9% Similarity=0.090 Sum_probs=47.1
Q ss_pred HHHHHHHHh--CCCch--hhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeChhhhhhhhhh
Q 032124 60 SMARKIYLR--GGLGV--GSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVLVERLHKLDCE 135 (147)
Q Consensus 60 Si~RklYl~--g~vGV--~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~LDri 135 (147)
.+|+.||.- .++.+ ..|+...|-. .+-+..+|+.||+.|||+..+..+=.||++|+..+..+
T Consensus 10 ~yL~~i~~l~~~~~~~~~~~la~~l~vs--------------~~tvs~~l~~Le~~GlV~r~~~~~v~LT~~G~~~~~~~ 75 (226)
T 2qq9_A 10 MYLRTIYELEEEGVTPLRARIAERLEQS--------------GPTVSQTVARMERDGLVVVASDRSLQMTPTGRTLATAV 75 (226)
T ss_dssp HHHHHHHHHHHHTCCCBHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEECTTSBEEECHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCccHHHHHHHHCCC--------------HHHHHHHHHHHHHCCCEEEeCCCCeEECHHHHHHHHHH
Confidence 345556652 23444 8888876643 25667799999999999998877889999999988766
Q ss_pred hc
Q 032124 136 NS 137 (147)
Q Consensus 136 ~~ 137 (147)
..
T Consensus 76 ~~ 77 (226)
T 2qq9_A 76 MR 77 (226)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 86
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=94.69 E-value=0.1 Score=35.28 Aligned_cols=57 Identities=16% Similarity=0.263 Sum_probs=44.0
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCC---eeeChhhhhh
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQ---SLVLVERLHK 131 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~G---R~lT~~G~~~ 131 (147)
.|++.| ..||..++.|....|-. .+.+.+.|+.||+.|+|+....+. ..||+++-..
T Consensus 27 ~Il~~L-~~~~~~~~ela~~l~is--------------~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~~~~~ 86 (102)
T 3pqk_A 27 MLVCTL-VEGEFSVGELEQQIGIG--------------QPTLSQQLGVLRESGIVETRRNIKQIFYRLTEAKAAQ 86 (102)
T ss_dssp HHHHHH-HTCCBCHHHHHHHHTCC--------------TTHHHHHHHHHHHTTSEEEECSSSCCEEEECSSTHHH
T ss_pred HHHHHH-HhCCCCHHHHHHHHCcC--------------HHHHHHHHHHHHHCCCeEEEEeCCEEEEEECcHHHHH
Confidence 477777 47999999999988753 367899999999999998775432 4678765543
No 87
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=94.66 E-value=0.03 Score=39.95 Aligned_cols=43 Identities=9% Similarity=-0.008 Sum_probs=32.8
Q ss_pred CCCchhHHHHHHHHhHhCCceeeCC---CCCe-----eeChhhhhhhhhhh
Q 032124 94 SKSSGSVARHILHQLQDTNIIELDS---KGQS-----LVLVERLHKLDCEN 136 (147)
Q Consensus 94 ~~asgsiiR~~LqqLE~~glV~k~~---~~GR-----~lT~~G~~~LDri~ 136 (147)
-.-|.+.+-.+|+.||+.|||+... .+|+ .||++|+..|+...
T Consensus 43 ~~i~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l~~~~ 93 (116)
T 3f8b_A 43 MELNEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRLTEIGHENMRLAF 93 (116)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEEECHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHCCCEEEEeeccCCCCCceEEEECHHHHHHHHHHH
Confidence 3556788999999999999998652 2342 69999999988654
No 88
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=94.50 E-value=0.082 Score=38.42 Aligned_cols=63 Identities=10% Similarity=0.044 Sum_probs=45.1
Q ss_pred HHHHHHHhCC-CchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC--CCCe----eeChhhhhhhh
Q 032124 61 MARKIYLRGG-LGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGQS----LVLVERLHKLD 133 (147)
Q Consensus 61 i~RklYl~g~-vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~~~LD 133 (147)
+|..|+-.+| +....|+...|-.+ +-+=.+++.||+.|||++.+ .++| .||++|+..++
T Consensus 36 vL~~L~~~~~~~~~~eLa~~l~~~~--------------~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~~ 101 (151)
T 4aik_A 36 TLYNINRLPPEQSQIQLAKAIGIEQ--------------PSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPIIE 101 (151)
T ss_dssp HHHHHHHSCTTSCHHHHHHHHTSCH--------------HHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHHH
T ss_pred HHHHHHHcCCCCcHHHHHHHHCcCH--------------HHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHHH
Confidence 5666765544 44577888766432 55677899999999998554 4454 47999999998
Q ss_pred hhhc
Q 032124 134 CENS 137 (147)
Q Consensus 134 ri~~ 137 (147)
.+..
T Consensus 102 ~~~~ 105 (151)
T 4aik_A 102 QVDG 105 (151)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 89
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=94.49 E-value=0.048 Score=40.15 Aligned_cols=62 Identities=10% Similarity=0.083 Sum_probs=42.8
Q ss_pred HHHHHHHhCC---CchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCC--CCe----eeChhhhhh
Q 032124 61 MARKIYLRGG---LGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK--GQS----LVLVERLHK 131 (147)
Q Consensus 61 i~RklYl~g~---vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~--~GR----~lT~~G~~~ 131 (147)
||..|+-.++ +.+..|....|-. .+-+-.+|+.||+.|||++..+ ++| .||++|+..
T Consensus 74 iL~~L~~~~~~~~~t~~eLa~~l~is--------------~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~ 139 (181)
T 2fbk_A 74 LLLTLYRSAPPEGLRPTELSALAAIS--------------GPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRAL 139 (181)
T ss_dssp HHHHHHHHCCSSCBCHHHHHHHCSCC--------------SGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHCCC--------------HHHHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHHH
Confidence 5666666664 7788887765432 2345568999999999997643 333 699999999
Q ss_pred hhhhh
Q 032124 132 LDCEN 136 (147)
Q Consensus 132 LDri~ 136 (147)
++.+.
T Consensus 140 ~~~~~ 144 (181)
T 2fbk_A 140 VTHLL 144 (181)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 90
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=94.46 E-value=0.15 Score=38.44 Aligned_cols=71 Identities=8% Similarity=0.007 Sum_probs=52.4
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCC---CC-----eeeChhhhhh
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK---GQ-----SLVLVERLHK 131 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~---~G-----R~lT~~G~~~ 131 (147)
.||.-|. .+|.-...|.+.+...- .++...|-+.|-.+|+.||+.|||+.... +| -.||++|+..
T Consensus 6 ~iL~lL~-~~~~~gyel~~~l~~~~------~~~~~~s~~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~~G~~~ 78 (179)
T 1yg2_A 6 VILTVLS-TRDATGYDITKEFSASI------GYFWKASHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQAGRSA 78 (179)
T ss_dssp HHHHHHH-HCCBCHHHHHHHHTTGG------GGTCCCCHHHHHHHHHHHHHTTSEEECCC---------CEEECHHHHHH
T ss_pred HHHHHHh-cCCCCHHHHHHHHHHHh------CCccCCCcCcHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeChHHHHH
Confidence 3566665 58888888888886422 34567778999999999999999986542 22 4699999999
Q ss_pred hhhhhc
Q 032124 132 LDCENS 137 (147)
Q Consensus 132 LDri~~ 137 (147)
+.....
T Consensus 79 l~~~~~ 84 (179)
T 1yg2_A 79 LGEWFD 84 (179)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 887544
No 91
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=94.37 E-value=0.024 Score=40.01 Aligned_cols=51 Identities=20% Similarity=0.087 Sum_probs=42.2
Q ss_pred chhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC--CCCeeeChhhhhhhhhhh
Q 032124 72 GVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGQSLVLVERLHKLDCEN 136 (147)
Q Consensus 72 GV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~--~~GR~lT~~G~~~LDri~ 136 (147)
.+..|+..||- |..-+|.+|+.||+.|+|+..+ ..|-.+++....++..+.
T Consensus 45 s~~eLa~~lgV--------------Sr~tVr~al~~L~~~GlI~~~~gG~~G~~V~~~~~~~~~~~~ 97 (102)
T 2b0l_A 45 VASKIADRVGI--------------TRSVIVNALRKLESAGVIESRSLGMKGTYIKVLNNKFLIELE 97 (102)
T ss_dssp CHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEECSSSCEEEEECCHHHHHHHH
T ss_pred CHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEEeCCCCcEEEecCCHHHHHHHH
Confidence 67888888874 4589999999999999999887 468899988877776553
No 92
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=94.36 E-value=0.06 Score=38.82 Aligned_cols=66 Identities=15% Similarity=0.101 Sum_probs=46.2
Q ss_pred HHhHHHHHHHHHHhCCC-------chhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeChh
Q 032124 55 YIRAASMARKIYLRGGL-------GVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVLVE 127 (147)
Q Consensus 55 YiRaASi~RklYl~g~v-------GV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~~ 127 (147)
|-..+.-++..-+.|.. .+..|+..|| -|..-+|.+|+.||+.|+|+..+..|-.+++.
T Consensus 13 ~~~i~~~l~~~I~~g~~~~G~~lPs~~~La~~~~--------------vSr~tvr~Al~~L~~~G~i~~~~~~G~~V~~~ 78 (126)
T 3ic7_A 13 YLQIADRICDDILLGQYEEEGRIPSVREYASIVE--------------VNANTVMRSYEYLQSQEVIYNKRGIGFFVASG 78 (126)
T ss_dssp TTHHHHHHHHHHHTTSSCBTSEECCTTTTTTCC---------------CCSGGGHHHHHHHHTTTSEEEETTTEEEECTT
T ss_pred HHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCcEEEEcCCccEEccC
Confidence 44555666666665532 3344555444 35588999999999999999998889999988
Q ss_pred hhhhhhh
Q 032124 128 RLHKLDC 134 (147)
Q Consensus 128 G~~~LDr 134 (147)
...++..
T Consensus 79 ~~~~~~~ 85 (126)
T 3ic7_A 79 AKMLIHS 85 (126)
T ss_dssp HHHHHHH
T ss_pred cHHHHHH
Confidence 7655443
No 93
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=94.30 E-value=0.14 Score=36.84 Aligned_cols=59 Identities=8% Similarity=0.027 Sum_probs=47.4
Q ss_pred hHHhHHHHHHHHHHhCC------C-chhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeCh
Q 032124 54 YYIRAASMARKIYLRGG------L-GVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVLV 126 (147)
Q Consensus 54 ~YiRaASi~RklYl~g~------v-GV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~ 126 (147)
.|-..+..+|..-+.|. + .+..|+..||- |..-+|.+|+.||..|+|+..+..|-.+++
T Consensus 12 ~~~~i~~~l~~~I~~g~~~~G~~lPse~~La~~~~v--------------Sr~tvr~Al~~L~~~Gli~~~~g~G~~V~~ 77 (126)
T 3by6_A 12 VYLQLVDRIKNEVATDVLSANDQLPSVRETALQEKI--------------NPNTVAKAYKELEAQKVIRTIPGKGTFITG 77 (126)
T ss_dssp HHHHHHHHHHHHHHTTSSCTTCEECCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEETTTEEEECS
T ss_pred HHHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEecCCeEEEcc
Confidence 46677777777666653 2 68889998884 348899999999999999999888988887
No 94
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=94.18 E-value=0.056 Score=37.02 Aligned_cols=61 Identities=18% Similarity=0.239 Sum_probs=44.4
Q ss_pred hHHhHHHHHHHHHHhC------CC-chhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeCh
Q 032124 54 YYIRAASMARKIYLRG------GL-GVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVLV 126 (147)
Q Consensus 54 ~YiRaASi~RklYl~g------~v-GV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~ 126 (147)
.|-..+.-+|..-+.+ .+ .+..|+..||- |.+.+|.+|+.||+.|+|+..+..|..+++
T Consensus 12 ~~~~l~~~i~~~I~~~~l~~g~~lps~~eLa~~~~v--------------Sr~tvr~al~~L~~~Gli~~~~g~G~~v~~ 77 (102)
T 1v4r_A 12 GYADVATHFRTLIKSGELAPGDTLPSVADIRAQFGV--------------AAKTVSRALAVLKSEGLVSSRGALGTVVEK 77 (102)
T ss_dssp CHHHHHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSS--------------CTTHHHHHTTTTTTSSCCEEETTTEEESCS
T ss_pred HHHHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEeCCCeEEEcc
Confidence 3555666555544442 22 68888888874 347899999999999999988777887776
Q ss_pred hh
Q 032124 127 ER 128 (147)
Q Consensus 127 ~G 128 (147)
..
T Consensus 78 ~~ 79 (102)
T 1v4r_A 78 NP 79 (102)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 95
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=94.10 E-value=0.16 Score=36.94 Aligned_cols=64 Identities=16% Similarity=0.128 Sum_probs=46.8
Q ss_pred HHhHHHHHHHHHHhCC------C-chhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeChh
Q 032124 55 YIRAASMARKIYLRGG------L-GVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVLVE 127 (147)
Q Consensus 55 YiRaASi~RklYl~g~------v-GV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~~ 127 (147)
|-.++.-+|..-+.|- + ....|+..||- |..-+|.+|+.||..|+|+..+..|-.+++.
T Consensus 6 ~~~i~~~i~~~I~~g~l~~G~~LPse~~La~~~gv--------------Sr~tVr~Al~~L~~~Gli~~~~g~G~~V~~~ 71 (129)
T 2ek5_A 6 YKQIASLIEDSIVDGTLSIDQRVPSTNELAAFHRI--------------NPATARNGLTLLVEAGILYKKRGIGMFVSAQ 71 (129)
T ss_dssp HHHHHHHHHHHHHTTSSCTTSCBCCHHHHHHHTTC--------------CHHHHHHHHHHHHTTTSEEEETTTEEEECTT
T ss_pred HHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCcEEEecCCEEEEecC
Confidence 4445555555555542 2 56778888774 4589999999999999999998889999887
Q ss_pred hhhhh
Q 032124 128 RLHKL 132 (147)
Q Consensus 128 G~~~L 132 (147)
...++
T Consensus 72 ~~~~~ 76 (129)
T 2ek5_A 72 APALI 76 (129)
T ss_dssp HHHHH
T ss_pred chHhh
Confidence 65443
No 96
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=93.86 E-value=0.13 Score=35.07 Aligned_cols=53 Identities=19% Similarity=0.112 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHh------CCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeee
Q 032124 57 RAASMARKIYLR------GGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLV 124 (147)
Q Consensus 57 RaASi~RklYl~------g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~l 124 (147)
|...|+--|--. +|+.|..++..+|= |.+-||.-|.+||+.|+|..++ +||.+
T Consensus 5 r~~~IL~~I~~~i~~~~g~~psv~EIa~~lgv--------------S~~TVrr~L~~Le~kG~I~R~~-ggr~~ 63 (77)
T 2jt1_A 5 IVTKIISIVQERQNMDDGAPVKTRDIADAAGL--------------SIYQVRLYLEQLHDVGVLEKVN-AGKGV 63 (77)
T ss_dssp HHHHHHHHHHHHHHHHTTSCEEHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEES-CSSSS
T ss_pred HHHHHHHHHHHHHhhccCCCcCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCcEEecC-CCCCc
Confidence 455566666666 89999999999883 3466999999999999999987 56654
No 97
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=93.78 E-value=0.18 Score=39.66 Aligned_cols=61 Identities=10% Similarity=0.037 Sum_probs=49.6
Q ss_pred HhHHHHHHHHHHhC-CCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeChhhhh
Q 032124 56 IRAASMARKIYLRG-GLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVLVERLH 130 (147)
Q Consensus 56 iRaASi~RklYl~g-~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~~G~~ 130 (147)
-|+..||+.|.-.+ ++++..|....|-. .+-+..+|+.||+.|||+++..+.-.|+++...
T Consensus 8 ~r~l~iL~~l~~~~~~~~~~ela~~~gl~--------------~stv~r~l~~L~~~G~v~~~~~~~Y~lg~~~~~ 69 (249)
T 1mkm_A 8 KKAFEILDFIVKNPGDVSVSEIAEKFNMS--------------VSNAYKYMVVLEEKGFVLRKKDKRYVPGYKLIE 69 (249)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHTTCC--------------HHHHHHHHHHHHHTTSEEECTTSCEEECTHHHH
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHCcC--------------HHHHHHHHHHHHHCCcEEECCCCcEEECHHHHH
Confidence 47889999887765 79999999987753 378899999999999999985566788886543
No 98
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=93.76 E-value=0.1 Score=34.32 Aligned_cols=45 Identities=11% Similarity=0.086 Sum_probs=37.3
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS 118 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~ 118 (147)
.|+..|.-.+++.+..|+..+|-. .+-+|..|+.||+.|+|+...
T Consensus 4 ~Il~~L~~~~~~s~~eLa~~lgvs--------------~~tv~r~L~~L~~~GlI~~~~ 48 (81)
T 2htj_A 4 EILEFLNRHNGGKTAEIAEALAVT--------------DYQARYYLLLLEKAGMVQRSP 48 (81)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHTSC--------------HHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcC--------------HHHHHHHHHHHHHCCCEEEec
Confidence 467777777899999999998753 378999999999999998643
No 99
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=93.65 E-value=0.069 Score=39.86 Aligned_cols=62 Identities=15% Similarity=0.193 Sum_probs=48.5
Q ss_pred HHHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCC---eeeChhhhhhhhhh
Q 032124 59 ASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQ---SLVLVERLHKLDCE 135 (147)
Q Consensus 59 ASi~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~G---R~lT~~G~~~LDri 135 (147)
..||+.|. ++|..+..|....|- |.+-+.+-|+.||++|||+...+|. -.||++|...|-..
T Consensus 61 ~~IL~~L~-~~~~t~~eLa~~lgl--------------s~stvs~hL~~L~~aGlV~~~~~Gr~~~y~lt~~~~~~l~~~ 125 (151)
T 3f6v_A 61 RRLVQLLT-SGEQTVNNLAAHFPA--------------SRSAISQHLRVLTEAGLVTPRKDGRFRYYRLDPQGLAQLRAL 125 (151)
T ss_dssp HHHHHHGG-GCCEEHHHHHTTSSS--------------CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHH
T ss_pred HHHHHHHH-hCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHHHHHHHHH
Confidence 35788887 899999999997664 3478999999999999998765321 46999997766544
No 100
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=93.64 E-value=0.29 Score=34.98 Aligned_cols=61 Identities=13% Similarity=0.156 Sum_probs=47.7
Q ss_pred hHHhHHHHHHHHHHhCCC-------chhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeCh
Q 032124 54 YYIRAASMARKIYLRGGL-------GVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVLV 126 (147)
Q Consensus 54 ~YiRaASi~RklYl~g~v-------GV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~ 126 (147)
.|...+.-++.--+.|.. .+..|+..||- |..-+|++|+.|+..|+|+..+..|-.+++
T Consensus 14 ~~~~i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~v--------------Sr~tvr~Al~~L~~~G~i~~~~g~G~~V~~ 79 (125)
T 3neu_A 14 IYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAV--------------NPNTVSRAYQELERAGYIYAKRGMGSFVTS 79 (125)
T ss_dssp HHHHHHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEETTTEEEECC
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCeEEEecCCEEEEec
Confidence 566666677766666532 57889998874 448999999999999999998888888887
Q ss_pred hh
Q 032124 127 ER 128 (147)
Q Consensus 127 ~G 128 (147)
.-
T Consensus 80 ~~ 81 (125)
T 3neu_A 80 DK 81 (125)
T ss_dssp CH
T ss_pred Cc
Confidence 43
No 101
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=93.39 E-value=0.094 Score=37.42 Aligned_cols=67 Identities=13% Similarity=0.028 Sum_probs=45.8
Q ss_pred HHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC---CCC--e---eeChhhhhhh
Q 032124 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS---KGQ--S---LVLVERLHKL 132 (147)
Q Consensus 61 i~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~---~~G--R---~lT~~G~~~L 132 (147)
||--|. .+|.---.|.+.... . .+..-|.+.|-.+|+.||+.|||+... .+| | .||++|+..|
T Consensus 14 IL~~L~-~~~~~Gyei~~~l~~---~-----~~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l 84 (115)
T 4esb_A 14 ILYIIS-QEEVYGYELSTKLNK---H-----GFTFVSEGSIYPLLLRMQKEKLIEGTLKASSLGPKRKYYHITDKGLEQL 84 (115)
T ss_dssp HHHHHH-HSCEEHHHHHHHHHH---T-----TCTTCCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECHHHHHHH
T ss_pred HHHHHH-cCCCCHHHHHHHHHH---c-----CCCCCCcChHHHHHHHHHHCCCeEEEeeecCCCCCcEEEEECHHHHHHH
Confidence 555554 566544455555543 1 244567789999999999999998642 234 2 4999999998
Q ss_pred hhhh
Q 032124 133 DCEN 136 (147)
Q Consensus 133 Dri~ 136 (147)
....
T Consensus 85 ~~~~ 88 (115)
T 4esb_A 85 EEFK 88 (115)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8754
No 102
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=93.35 E-value=0.085 Score=36.63 Aligned_cols=58 Identities=17% Similarity=0.215 Sum_probs=44.2
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCC---eeeChhhhhhh
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQ---SLVLVERLHKL 132 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~G---R~lT~~G~~~L 132 (147)
.|+..|. .++..+..|....|-. .+-+...|+.||+.|+|+...+|. ..||+++...+
T Consensus 29 ~IL~~L~-~~~~s~~eLa~~lgis--------------~stvs~~L~~L~~~GlV~~~~~gr~~~y~l~~~~~~~l 89 (108)
T 2kko_A 29 QILDLLA-QGERAVEAIATATGMN--------------LTTASANLQALKSGGLVEARREGTRQYYRIAGEDVARL 89 (108)
T ss_dssp HHHHHHT-TCCEEHHHHHHHHTCC--------------HHHHHHHHHHHHHHTSEEEEEETTEEEEEESCHHHHHH
T ss_pred HHHHHHH-cCCcCHHHHHHHHCcC--------------HHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHHHHHH
Confidence 4676665 6899999999988743 378999999999999998765432 36888875443
No 103
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=93.35 E-value=0.12 Score=37.43 Aligned_cols=62 Identities=10% Similarity=0.059 Sum_probs=38.4
Q ss_pred HHHHHHHhC-----CCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC-CCCe----eeChhhhh
Q 032124 61 MARKIYLRG-----GLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS-KGQS----LVLVERLH 130 (147)
Q Consensus 61 i~RklYl~g-----~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~-~~GR----~lT~~G~~ 130 (147)
||..|+..+ ++.+..|....|-. .+-+=.+++.||+.|||+... .++| .||++|+.
T Consensus 38 vL~~l~~~~~~~~~~~t~~eLa~~l~~~--------------~~tvsr~v~~Le~~glVr~~~~~DrR~~~v~LT~~G~~ 103 (148)
T 4fx0_A 38 TLAVISLSEGSAGIDLTMSELAARIGVE--------------RTTLTRNLEVMRRDGLVRVMAGADARCKRIELTAKGRA 103 (148)
T ss_dssp HHHHHHC---------CHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSBC-----------CCBCHHHHH
T ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHCCC--------------hhhHHHHHHHHHHCCCEEeeCCCCCCeeEEEECHHHHH
Confidence 566666543 46677777766543 255667899999999996432 3344 58999999
Q ss_pred hhhhhh
Q 032124 131 KLDCEN 136 (147)
Q Consensus 131 ~LDri~ 136 (147)
.++.+.
T Consensus 104 ~~~~~~ 109 (148)
T 4fx0_A 104 ALQKAV 109 (148)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
No 104
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=93.30 E-value=0.13 Score=37.13 Aligned_cols=61 Identities=10% Similarity=0.191 Sum_probs=47.7
Q ss_pred hHHhHHHHHHHHHHhCC------C-chhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeCh
Q 032124 54 YYIRAASMARKIYLRGG------L-GVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVLV 126 (147)
Q Consensus 54 ~YiRaASi~RklYl~g~------v-GV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~ 126 (147)
.|...+.-+|..-+.|- + .+..|+..||- |..-+|.||++||..|||+..+..|-.+++
T Consensus 15 lY~QI~~~i~~~I~~G~l~pG~~LPser~La~~~gV--------------Sr~tVReAl~~L~~eGlv~~~~g~G~~V~~ 80 (134)
T 4ham_A 15 IYEQIVQKIKEQVVKGVLQEGEKILSIREFASRIGV--------------NPNTVSKAYQELERQEVIITVKGKGTFIAN 80 (134)
T ss_dssp HHHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEETTTEEEECC
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHCC--------------CHHHHHHHHHHHHHCCcEEEEcCcEEEEeC
Confidence 67777877877777652 2 45678888875 448999999999999999998878888765
Q ss_pred hh
Q 032124 127 ER 128 (147)
Q Consensus 127 ~G 128 (147)
..
T Consensus 81 ~~ 82 (134)
T 4ham_A 81 QT 82 (134)
T ss_dssp CS
T ss_pred Cc
Confidence 43
No 105
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=93.26 E-value=0.12 Score=40.64 Aligned_cols=61 Identities=21% Similarity=0.235 Sum_probs=49.0
Q ss_pred HhHHHHHHHHHHhC-CCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCC-CCeeeChhhhh
Q 032124 56 IRAASMARKIYLRG-GLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK-GQSLVLVERLH 130 (147)
Q Consensus 56 iRaASi~RklYl~g-~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~-~GR~lT~~G~~ 130 (147)
-|+..||+.|.-.+ ++++..|....|-. .+-+..+|+.||+.|||+++++ +...|+++...
T Consensus 6 ~r~l~iL~~l~~~~~~~s~~ela~~~gl~--------------~stv~r~l~~L~~~G~v~~~~~~~~Y~lg~~~~~ 68 (241)
T 2xrn_A 6 ARAASIMRALGSHPHGLSLAAIAQLVGLP--------------RSTVQRIINALEEEFLVEALGPAGGFRLGPALGQ 68 (241)
T ss_dssp HHHHHHHHHHHTCTTCEEHHHHHHHTTSC--------------HHHHHHHHHHHHTTTSEEECGGGCEEEECSHHHH
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHCcC--------------HHHHHHHHHHHHHCCCEEEeCCCCeEEECHHHHH
Confidence 47889999887654 79999999987653 3889999999999999999865 55677776543
No 106
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=93.12 E-value=0.062 Score=45.01 Aligned_cols=41 Identities=12% Similarity=0.096 Sum_probs=31.4
Q ss_pred chhHHHHHHHHhHhCCceeeC--CCCCe----eeChhhhhhhhhhhc
Q 032124 97 SGSVARHILHQLQDTNIIELD--SKGQS----LVLVERLHKLDCENS 137 (147)
Q Consensus 97 sgsiiR~~LqqLE~~glV~k~--~~~GR----~lT~~G~~~LDri~~ 137 (147)
+.+-+=.+|+.||+.|||++. +...| .||++|+..++.+.+
T Consensus 433 ~~~~~t~~~~~le~~g~v~r~~~~~D~R~~~i~lT~~g~~~~~~~~~ 479 (487)
T 1hsj_A 433 KPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANIQKLIS 479 (487)
T ss_dssp CHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCEeecCCCCCCCeEEEEECHHHHHHHHHHHH
Confidence 345566789999999999864 34555 479999999988754
No 107
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=92.97 E-value=0.11 Score=36.43 Aligned_cols=60 Identities=15% Similarity=0.247 Sum_probs=46.2
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCC---CeeeChhhhhhhhh
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKG---QSLVLVERLHKLDC 134 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~---GR~lT~~G~~~LDr 134 (147)
.|++.|. +||..++.|....|- |.+-+.+.|+.||+.|||+....| --.||+.|...+..
T Consensus 22 ~Il~~L~-~~~~~~~eLa~~l~i--------------s~~tvs~hL~~L~~~GlV~~~~~gr~~~y~l~~~~~~~l~~ 84 (118)
T 3f6o_A 22 AVLGRLS-RGPATVSELAKPFDM--------------ALPSFMKHIHFLEDSGWIRTHKQGRVRTCAIEKEPFTAVEA 84 (118)
T ss_dssp HHHHHHH-TCCEEHHHHHTTCCS--------------CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHHHHHHH
T ss_pred HHHHHHH-hCCCCHHHHHHHhCc--------------CHHHHHHHHHHHHHCCCeEEEecCCEEEEEECHHHHHHHHH
Confidence 4777776 799999999987653 347788999999999999876543 24689988776643
No 108
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=92.97 E-value=0.19 Score=35.34 Aligned_cols=56 Identities=13% Similarity=0.093 Sum_probs=43.8
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCe----eeChhhhhh
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQS----LVLVERLHK 131 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR----~lT~~G~~~ 131 (147)
.|++.|. .+|..+..|....|- |.+-+.+.|+.||+.|+|+...+ || .||+++-..
T Consensus 25 ~IL~~L~-~~~~~~~eLa~~lgi--------------s~stvs~~L~~L~~~GlV~~~~~-gr~~~y~l~~~~~~~ 84 (118)
T 2jsc_A 25 RILVALL-DGVCYPGQLAAHLGL--------------TRSNVSNHLSCLRGCGLVVATYE-GRQVRYALADSHLAR 84 (118)
T ss_dssp HHHHHHH-TTCCSTTTHHHHHSS--------------CHHHHHHHHHHHTTTTSEEEEEC-SSSEEEEESSHHHHH
T ss_pred HHHHHHH-cCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCceEEEEE-CCEEEEEEChHHHHH
Confidence 5777776 789999999998764 34789999999999999987643 43 688877543
No 109
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=92.89 E-value=0.23 Score=35.13 Aligned_cols=58 Identities=16% Similarity=0.188 Sum_probs=43.9
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCe----eeChhhhhhh
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQS----LVLVERLHKL 132 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR----~lT~~G~~~L 132 (147)
.|+..|.-.++..+..|....|-. .+-+.+.|+.||+.|+|+.... || .||+++...+
T Consensus 46 ~IL~~L~~~~~~s~~eLa~~l~is--------------~stvs~~L~~L~~~Glv~~~~~-gr~~~y~l~~~~~~~~ 107 (122)
T 1u2w_A 46 KITYALCQDEELCVCDIANILGVT--------------IANASHHLRTLYKQGVVNFRKE-GKLALYSLGDEHIRQI 107 (122)
T ss_dssp HHHHHHHHSSCEEHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEC-----CCEEEESCHHHHHH
T ss_pred HHHHHHHHCCCcCHHHHHHHHCcC--------------HHHHHHHHHHHHHCCCeEEEEE-CCEEEEEECHHHHHHH
Confidence 477777767999999999988743 3788899999999999998754 44 6888875544
No 110
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=92.85 E-value=0.18 Score=40.54 Aligned_cols=58 Identities=16% Similarity=0.153 Sum_probs=47.4
Q ss_pred HhHHHHHHHHHHh-CCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeChh
Q 032124 56 IRAASMARKIYLR-GGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVLVE 127 (147)
Q Consensus 56 iRaASi~RklYl~-g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~~ 127 (147)
-|+.+||..|--. +|+++..|.+.-|-.| +-+..+|+.|++.|||++++++...|+++
T Consensus 30 ~Ral~IL~~l~~~~~~ltl~eia~~lgl~k--------------sTv~RlL~tL~~~G~v~~~~~~~Y~LG~~ 88 (275)
T 3mq0_A 30 RRAVRILDLVAGSPRDLTAAELTRFLDLPK--------------SSAHGLLAVMTELDLLARSADGTLRIGPH 88 (275)
T ss_dssp HHHHHHHHHHHHCSSCEEHHHHHHHHTCC----------------CHHHHHHHHHHTTSEEECTTSEEEECTH
T ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHCcCH--------------HHHHHHHHHHHHCCCEEECCCCcEEehHH
Confidence 4788899988875 4799999999988644 67889999999999999998666777775
No 111
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=92.85 E-value=0.1 Score=39.92 Aligned_cols=63 Identities=14% Similarity=0.088 Sum_probs=45.5
Q ss_pred HhHHHHHHHHHHhC------CCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeChhhh
Q 032124 56 IRAASMARKIYLRG------GLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVLVERL 129 (147)
Q Consensus 56 iRaASi~RklYl~g------~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~~G~ 129 (147)
-.++.-+|.--+.| .+....|+..||- |..-+|.+|+.||..|||+..+.+|-.+++-..
T Consensus 19 ~~v~~~l~~~I~~g~l~pG~~L~E~~La~~lgV--------------SRtpVREAl~~L~~eGlv~~~~~~G~~V~~~~~ 84 (222)
T 3ihu_A 19 DTVFFGIMSGLELGTFVPGQRLVETDLVAHFGV--------------GRNSVREALQRLAAEGIVDLQRHRGAVIRRLSL 84 (222)
T ss_dssp HHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEECSTTCEEECCCCH
T ss_pred HHHHHHHHHHHHhCCCCCCCccCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEEecCCCeEEecCCH
Confidence 33444444444444 2336778888885 458999999999999999999888988887655
Q ss_pred hhh
Q 032124 130 HKL 132 (147)
Q Consensus 130 ~~L 132 (147)
.++
T Consensus 85 ~~~ 87 (222)
T 3ihu_A 85 QET 87 (222)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 112
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=92.80 E-value=0.15 Score=36.54 Aligned_cols=67 Identities=12% Similarity=0.011 Sum_probs=44.5
Q ss_pred HHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC---CCC-----eeeChhhhhhh
Q 032124 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS---KGQ-----SLVLVERLHKL 132 (147)
Q Consensus 61 i~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~---~~G-----R~lT~~G~~~L 132 (147)
||.-|. .+|.---.|.+.... . .+..-|.+.|-.+|+.||+.|||+... .+| -.||++|+..|
T Consensus 18 IL~lL~-~~p~~Gyei~~~l~~---~-----g~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~lT~~G~~~l 88 (116)
T 3hhh_A 18 VLAIIQ-RKETYGYEITKILND---Q-----GFTEIVEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYRLTSSGEAEL 88 (116)
T ss_dssp HHHHHH-HSCBCHHHHHHHHHT---T-----SCSSCCHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEEEECHHHHHHH
T ss_pred HHHHHh-cCCCCHHHHHHHHHH---c-----CCCCCCccHHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECHHHHHHH
Confidence 455444 566543455555543 2 244567789999999999999998642 234 25999999998
Q ss_pred hhhh
Q 032124 133 DCEN 136 (147)
Q Consensus 133 Dri~ 136 (147)
....
T Consensus 89 ~~~~ 92 (116)
T 3hhh_A 89 ADFW 92 (116)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 113
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=92.69 E-value=0.23 Score=34.03 Aligned_cols=57 Identities=14% Similarity=0.139 Sum_probs=44.2
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCC---eeeChhhhhh
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQ---SLVLVERLHK 131 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~G---R~lT~~G~~~ 131 (147)
.|+..|. +++..+..|....|-. .+-+.+.|+.||+.|+|+...+|. -.||+.+-..
T Consensus 30 ~IL~~L~-~~~~~~~ela~~l~is--------------~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~~~~~ 89 (106)
T 1r1u_A 30 RIMELLS-VSEASVGHISHQLNLS--------------QSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVAT 89 (106)
T ss_dssp HHHHHHH-HCCBCHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEEEETTEEEEEESSHHHHH
T ss_pred HHHHHHH-hCCCCHHHHHHHHCcC--------------HHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHHHHH
Confidence 5777777 8999999999988743 378899999999999998765332 3578877543
No 114
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=92.67 E-value=0.23 Score=33.20 Aligned_cols=58 Identities=16% Similarity=0.118 Sum_probs=44.0
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCC---eeeChhhhhhh
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQ---SLVLVERLHKL 132 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~G---R~lT~~G~~~L 132 (147)
.|++.|.- |+..+..|....|- |.+-+.+.|+.||+.|+|+...+|. ..||+++-..+
T Consensus 27 ~Il~~L~~-~~~~~~ela~~l~i--------------s~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~~~~~l 87 (98)
T 3jth_A 27 QILCMLHN-QELSVGELCAKLQL--------------SQSALSQHLAWLRRDGLVTTRKEAQTVYYTLKSEEVKAM 87 (98)
T ss_dssp HHHHHTTT-SCEEHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEECCTTCCEEEECCHHHHHH
T ss_pred HHHHHHhc-CCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECHHHHHHH
Confidence 46776654 89999999998864 3478999999999999999875432 35777765443
No 115
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=92.57 E-value=0.095 Score=39.00 Aligned_cols=68 Identities=6% Similarity=-0.059 Sum_probs=44.5
Q ss_pred HHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCC---CCe-----eeChhhhhhh
Q 032124 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK---GQS-----LVLVERLHKL 132 (147)
Q Consensus 61 i~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~---~GR-----~lT~~G~~~L 132 (147)
||.-|. .+|.--..|.+..+..-. .+..-+.+.|-.+|+.||+.|||+.... +|+ .||++|+..+
T Consensus 46 IL~~L~-~~~~~gyeI~~~l~~~~~------~~~~is~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l 118 (145)
T 1xma_A 46 ILSLLI-EGDSYGYEISKNIRIKTD------ELYVIKETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRITPEGIKYY 118 (145)
T ss_dssp HHHHHH-HCCEEHHHHHHHHHHHHT------TSCCCCHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEECHHHHHHH
T ss_pred HHHHHH-hCCCCHHHHHHHHHHhhC------CccCcChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEEECHHHHHHH
Confidence 676665 467654555554432110 1234566889999999999999986531 232 7999999988
Q ss_pred hhh
Q 032124 133 DCE 135 (147)
Q Consensus 133 Dri 135 (147)
...
T Consensus 119 ~~~ 121 (145)
T 1xma_A 119 KQK 121 (145)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 116
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=92.46 E-value=0.12 Score=37.11 Aligned_cols=67 Identities=13% Similarity=0.079 Sum_probs=42.8
Q ss_pred HHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC---CCC-----eeeChhhhhhh
Q 032124 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS---KGQ-----SLVLVERLHKL 132 (147)
Q Consensus 61 i~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~---~~G-----R~lT~~G~~~L 132 (147)
||--|. .+|.---.|.+..... | +..-|.+.|-.+|+.||+.|||+... .+| -.||++|+..|
T Consensus 16 IL~lL~-~~p~~Gyei~~~l~~~---g-----~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l 86 (117)
T 4esf_A 16 VLEIIS-RRETYGYEITRHLNDL---G-----FTEVVEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSLNEAGRQEL 86 (117)
T ss_dssp HHHHHH-HSCBCHHHHHHHHHHH---T-----CTTCCHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEECHHHHHHH
T ss_pred HHHHHH-cCCCCHHHHHHHHHHc---C-----CCCCCccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEECHHHHHHH
Confidence 444443 4665444454444321 2 23557789999999999999998653 233 25999999998
Q ss_pred hhhh
Q 032124 133 DCEN 136 (147)
Q Consensus 133 Dri~ 136 (147)
....
T Consensus 87 ~~~~ 90 (117)
T 4esf_A 87 ELFW 90 (117)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8754
No 117
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=92.41 E-value=0.36 Score=35.39 Aligned_cols=57 Identities=12% Similarity=0.106 Sum_probs=42.5
Q ss_pred HHHHHHHHHHh--CCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC-CCCeeeChhh
Q 032124 58 AASMARKIYLR--GGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS-KGQSLVLVER 128 (147)
Q Consensus 58 aASi~RklYl~--g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~-~~GR~lT~~G 128 (147)
|-.++..|..+ +++.+..++..+|- |-+.+|++|++|+++|||+... .||-+|+...
T Consensus 16 Al~~L~~La~~~~~~~~~~~iA~~~~i--------------~~~~l~kil~~L~~~Glv~s~rG~GGy~L~~~p 75 (149)
T 1ylf_A 16 AVHILSILKNNPSSLCTSDYMAESVNT--------------NPVVIRKIMSYLKQAGFVYVNRGPGGAGLLKDL 75 (149)
T ss_dssp HHHHHHHHHHSCGGGCCHHHHHHHHTS--------------CHHHHHHHHHHHHHTTSEEEC---CCEEESSCG
T ss_pred HHHHHHHHHhCCCCCcCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCcEEEccCCCceEeCCCh
Confidence 44456666653 47889999998775 3489999999999999998654 5788887654
No 118
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=92.35 E-value=0.36 Score=33.17 Aligned_cols=62 Identities=11% Similarity=0.083 Sum_probs=45.1
Q ss_pred HHHHHHHHH-hCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC--CC--CeeeChhhhhhhh
Q 032124 59 ASMARKIYL-RGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KG--QSLVLVERLHKLD 133 (147)
Q Consensus 59 ASi~RklYl-~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~--~~--GR~lT~~G~~~LD 133 (147)
+.++.-|++ .+|+.+..|+...|- +.+-+..+|+.||+.|||++.+ .+ ...++..|...+.
T Consensus 29 ~~il~~L~~~~~~~t~~ela~~l~~--------------~~stvs~~l~~L~~~G~v~r~~~~~d~r~~~~~~~~~~~~~ 94 (152)
T 1ku9_A 29 GAVYAILYLSDKPLTISDIMEELKI--------------SKGNVSMSLKKLEELGFVRKVWIKGERKNYYEAVDGFSSIK 94 (152)
T ss_dssp HHHHHHHHHCSSCEEHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEECCTTCSSCEEEECCHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEEecCCCceEEEeecchHHHHH
Confidence 346666775 689999999999874 3367889999999999999863 22 3467776654444
Q ss_pred h
Q 032124 134 C 134 (147)
Q Consensus 134 r 134 (147)
.
T Consensus 95 ~ 95 (152)
T 1ku9_A 95 D 95 (152)
T ss_dssp H
T ss_pred H
Confidence 3
No 119
>2co5_A Viral protein F93; viral protein-winged helix complex, winged helix, DNA-bindin WHTH, disulfide bond, STIV; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=92.16 E-value=0.15 Score=35.92 Aligned_cols=42 Identities=12% Similarity=0.191 Sum_probs=32.9
Q ss_pred CchhHHHHHHHHhHhCCceeeCCCCC---eeeChhhhhhhhhhhc
Q 032124 96 SSGSVARHILHQLQDTNIIELDSKGQ---SLVLVERLHKLDCENS 137 (147)
Q Consensus 96 asgsiiR~~LqqLE~~glV~k~~~~G---R~lT~~G~~~LDri~~ 137 (147)
-|.+.|=-+|+.||+.|||+...+.. -.||++|+..|....+
T Consensus 42 is~GtlYp~L~rLe~~GlI~~~~~~~rk~Y~iT~~Gr~~l~~~~~ 86 (99)
T 2co5_A 42 ISDGVLYPLIDSLIDDKILREEEAPDGKVLFLTEKGMKEFEELHE 86 (99)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEECCTTSCEEEECHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHCCCEEEeeCCCcEEEEECHHHHHHHHHHHH
Confidence 45577788999999999999765222 4799999999887543
No 120
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=91.99 E-value=0.51 Score=38.00 Aligned_cols=60 Identities=28% Similarity=0.315 Sum_probs=45.7
Q ss_pred hHHhHHHHHHHHHHhCC------C-chhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeCh
Q 032124 54 YYIRAASMARKIYLRGG------L-GVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVLV 126 (147)
Q Consensus 54 ~YiRaASi~RklYl~g~------v-GV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~ 126 (147)
.|...+..++.--..|- + ....|+..||- |..-+|+||++|++.|+|+..+..|-.+++
T Consensus 30 ~~~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~v--------------Sr~tvr~Al~~L~~~G~i~~~~g~G~~V~~ 95 (272)
T 3eet_A 30 AYLRVAGDLRKKIVDGSLPPHTRLPSQARIREEYGV--------------SDTVALEARKVLMAEGLVEGRSGSGTYVRE 95 (272)
T ss_dssp HHHHHHHHHHHHHHHTSSCTTSBCCCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEECCC--EEECC
T ss_pred HHHHHHHHHHHHHHcCCCCCcCCCcCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEEecCceEEEec
Confidence 57777777777666652 2 57789999885 458999999999999999998877877775
Q ss_pred h
Q 032124 127 E 127 (147)
Q Consensus 127 ~ 127 (147)
.
T Consensus 96 ~ 96 (272)
T 3eet_A 96 R 96 (272)
T ss_dssp C
T ss_pred C
Confidence 4
No 121
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=91.88 E-value=0.1 Score=40.48 Aligned_cols=71 Identities=17% Similarity=0.091 Sum_probs=48.6
Q ss_pred chhHHhHHHHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC---CCCeeeChhh
Q 032124 52 DWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS---KGQSLVLVER 128 (147)
Q Consensus 52 DW~YiRaASi~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~---~~GR~lT~~G 128 (147)
.+-+.++-+....++-.+++.+..++...|-.+ +-+=..+++||+.||++... ..+=.||++|
T Consensus 9 ~l~~l~~l~~~~~l~~~~~~s~s~aA~~L~isq--------------~avSr~I~~LE~~~L~~R~~~~R~~~v~LT~~G 74 (230)
T 3cta_A 9 YYRAIKKIKEAAEASNRAYLTSSKLADMLGISQ--------------QSASRIIIDLEKNGYITRTVTKRGQILNITEKG 74 (230)
T ss_dssp HHHHHHHHHHHTTTSSEEECCHHHHHHHHTSCH--------------HHHHHHHHHHHHTTSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHHHhcccccCCCcCHHHHHHHHCCCH--------------HHHHHHHHHHHHCCCEEEEEcCCeEEEEECHHH
Confidence 344444433333344445577888888776543 56777889999999999873 2355799999
Q ss_pred hhhhhhhh
Q 032124 129 LHKLDCEN 136 (147)
Q Consensus 129 ~~~LDri~ 136 (147)
+..++...
T Consensus 75 ~~l~~~~~ 82 (230)
T 3cta_A 75 LDVLYTEF 82 (230)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988653
No 122
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=91.84 E-value=0.092 Score=40.11 Aligned_cols=62 Identities=16% Similarity=0.137 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhC------CCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeChhhhhh
Q 032124 58 AASMARKIYLRG------GLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVLVERLHK 131 (147)
Q Consensus 58 aASi~RklYl~g------~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~ 131 (147)
++.-+|.--+.| .+....|+..||- |..-+|.+|+.||..|||+..+..|-.+++-...+
T Consensus 17 v~~~l~~~I~~g~l~pG~~L~e~~La~~lgV--------------SRtpVREAL~~L~~eGlv~~~~~~G~~V~~~~~~~ 82 (218)
T 3sxy_A 17 VYNLLKEMILNHELKLGEKLNVRELSEKLGI--------------SFTPVRDALLQLATEGLVKVVPRVGFFVTDVDEKF 82 (218)
T ss_dssp HHHHHHHHHHTTSSCTTCEECHHHHHHHHTC--------------CHHHHHHHHHHHHHHTSEEEETTTEEEECCCCHHH
T ss_pred HHHHHHHHHHhCCCCCCCEeCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEEeCCCceEEcCCCHHH
Confidence 344455544444 2446788888885 45899999999999999999888898888765554
Q ss_pred hh
Q 032124 132 LD 133 (147)
Q Consensus 132 LD 133 (147)
+.
T Consensus 83 ~~ 84 (218)
T 3sxy_A 83 IR 84 (218)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 123
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=91.61 E-value=0.37 Score=34.43 Aligned_cols=60 Identities=8% Similarity=0.104 Sum_probs=43.9
Q ss_pred HHHHHHHH-hCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCe-----eeChhhh
Q 032124 60 SMARKIYL-RGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQS-----LVLVERL 129 (147)
Q Consensus 60 Si~RklYl-~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR-----~lT~~G~ 129 (147)
.||..|+- .+|+.+..|....+.. +++ +.+-+-.+|+.||+.|||+..+++.+ .+|++|.
T Consensus 13 ~vL~~L~~~~~~~t~~el~~~l~~~--~~~--------~~~Tvt~~l~rLe~kGlv~r~~~~r~~~~~~~lt~~~~ 78 (138)
T 2g9w_A 13 AVMDHLWSRTEPQTVRQVHEALSAR--RDL--------AYTTVMAVLQRLAKKNLVLQIRDDRAHRYAPVHGRDEL 78 (138)
T ss_dssp HHHHHHHTCSSCEEHHHHHHHHTTT--CCC--------CHHHHHHHHHHHHHTTSEEEEC---CCEEEESSCHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHhcc--CCC--------CHHHHHHHHHHHHHCCCEEEEecCCeEEEEeCCCHHHH
Confidence 37788887 5999999999998753 232 34678889999999999998765322 2677774
No 124
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=91.56 E-value=0.27 Score=38.95 Aligned_cols=60 Identities=8% Similarity=0.014 Sum_probs=48.2
Q ss_pred HhHHHHHHHHHH-hCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeChhhh
Q 032124 56 IRAASMARKIYL-RGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVLVERL 129 (147)
Q Consensus 56 iRaASi~RklYl-~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~~G~ 129 (147)
-|+..||+.|.- .+++++..|.+..|-.| +-+..+|+.||+.|||++++++...|+++.-
T Consensus 23 ~r~l~iL~~l~~~~~~~~~~eia~~~gl~k--------------stv~r~l~tL~~~G~v~~~~~~~Y~lg~~~~ 83 (260)
T 2o0y_A 23 TRVIDLLELFDAAHPTRSLKELVEGTKLPK--------------TTVVRLVATMCARSVLTSRADGSYSLGPEML 83 (260)
T ss_dssp HHHHHHHTTCBTTBSSBCHHHHHHHHCCCH--------------HHHHHHHHHHHHTTSEEECTTSCEEECHHHH
T ss_pred HHHHHHHHHHhhCCCCcCHHHHHHHHCcCH--------------HHHHHHHHHHHHCCCEEECCCCeEEecHHHH
Confidence 477788887754 47899999999887543 7889999999999999998755677887654
No 125
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=91.48 E-value=0.14 Score=40.02 Aligned_cols=66 Identities=15% Similarity=0.182 Sum_probs=49.4
Q ss_pred hHHhHHHHHHHHHHhC------CCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeChh
Q 032124 54 YYIRAASMARKIYLRG------GLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVLVE 127 (147)
Q Consensus 54 ~YiRaASi~RklYl~g------~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~~ 127 (147)
.+-.++..+|..-+.| .+....|+..||- |..-+|.+|+.||..|||+..+..|-.+++-
T Consensus 29 ~~~~v~~~l~~~I~~g~l~pG~~L~e~~La~~lgV--------------SRtpVREAL~~L~~eGlv~~~~~~G~~V~~~ 94 (239)
T 2hs5_A 29 RTTRVAGILRDAIIDGTFRPGARLSEPDICAALDV--------------SRNTVREAFQILIEDRLVAHELNRGVFVRVP 94 (239)
T ss_dssp HHHHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEETTTEEEECCC
T ss_pred HHHHHHHHHHHHHHcCCCCCcCEeCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEEeCCCeeEEeCC
Confidence 3445555666555554 2456788888885 4589999999999999999998889999886
Q ss_pred hhhhhh
Q 032124 128 RLHKLD 133 (147)
Q Consensus 128 G~~~LD 133 (147)
...++.
T Consensus 95 ~~~~~~ 100 (239)
T 2hs5_A 95 TAEDIT 100 (239)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 655543
No 126
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=91.48 E-value=0.15 Score=39.98 Aligned_cols=49 Identities=16% Similarity=0.251 Sum_probs=40.8
Q ss_pred CCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeChhhhhhh
Q 032124 70 GLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVLVERLHKL 132 (147)
Q Consensus 70 ~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~L 132 (147)
.+....|+..||- |..-||.+|+.||..|+|+..+.+|-.+++-...++
T Consensus 49 ~L~e~~La~~lgV--------------Sr~~VReAL~~L~~~Glv~~~~~~G~~V~~~~~~~~ 97 (237)
T 3c7j_A 49 ALRQQELATLFGV--------------SRMPVREALRQLEAQSLLRVETHKGAVVAPLITEDA 97 (237)
T ss_dssp BCCHHHHHHHHTS--------------CHHHHHHHHHHHHHTTSEEEETTTEEEECCCHHHHH
T ss_pred eeCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEEeCCCceEEecCCHHHH
Confidence 4677888998885 458999999999999999999888988887765544
No 127
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=91.33 E-value=0.094 Score=37.10 Aligned_cols=70 Identities=6% Similarity=-0.089 Sum_probs=45.9
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCch-hHHHHHHHHhHhCCceeeCCC--CC-----eeeChhhhhh
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSG-SVARHILHQLQDTNIIELDSK--GQ-----SLVLVERLHK 131 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asg-siiR~~LqqLE~~glV~k~~~--~G-----R~lT~~G~~~ 131 (147)
.||.-|. .+|.-...|.+.... .|.- . ..-+- +.+-.+|+.||+.|||+.... .| -.||++|+..
T Consensus 17 ~IL~~L~-~~~~~gyel~~~l~~---~g~~--~-~~is~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~LT~~G~~~ 89 (118)
T 2esh_A 17 TILLLVA-EKPSHGYELAERLAE---FGIE--I-PGIGHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRITPQGKLY 89 (118)
T ss_dssp HHHHHHH-HSCBCHHHHHHHHHT---TCCS--S-TTCCCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEECHHHHHH
T ss_pred HHHHHHH-cCCCCHHHHHHHHHH---hCCc--c-cCCCCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEEEChHHHHH
Confidence 3666664 367666667666643 2210 0 12455 678889999999999986531 23 2799999998
Q ss_pred hhhhh
Q 032124 132 LDCEN 136 (147)
Q Consensus 132 LDri~ 136 (147)
+....
T Consensus 90 l~~~~ 94 (118)
T 2esh_A 90 LREIL 94 (118)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87643
No 128
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=91.27 E-value=0.38 Score=35.30 Aligned_cols=55 Identities=15% Similarity=0.161 Sum_probs=41.1
Q ss_pred HHHHHHHHh---CCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC--CCCeeeChhh
Q 032124 60 SMARKIYLR---GGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGQSLVLVER 128 (147)
Q Consensus 60 Si~RklYl~---g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~--~~GR~lT~~G 128 (147)
.+|..|..+ +|+.+..++..+|- |.+.+|++|++|.++|+|+... .||-+|+..-
T Consensus 15 ~~L~~La~~~~~~~~s~~~IA~~~~i--------------~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p 74 (143)
T 3t8r_A 15 TLMISLAKKEGQGCISLKSIAEENNL--------------SDLYLEQLVGPLRNAGLIRSVRGAKGGYQLRVPA 74 (143)
T ss_dssp HHHHHHHTTTTSCCEEHHHHHHHTTC--------------CHHHHHHHHHHHHHTTSEEECSSSSSEEEESSCG
T ss_pred HHHHHHHhCCCCCCcCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCEEEecCCCCCCeeecCCc
Confidence 355555553 36888999988764 3489999999999999998654 4688887544
No 129
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=91.21 E-value=0.13 Score=36.91 Aligned_cols=68 Identities=4% Similarity=-0.035 Sum_probs=42.7
Q ss_pred HHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC---CCC-----eeeChhhhhhh
Q 032124 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS---KGQ-----SLVLVERLHKL 132 (147)
Q Consensus 61 i~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~---~~G-----R~lT~~G~~~L 132 (147)
||--|. .+|.---.|.+.....-. + + -+.+.+-.+|+.||+.|||+... .+| -.||++|+..|
T Consensus 19 IL~lL~-~~p~~gyel~~~l~~~~~-~-----~--i~~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y~lT~~G~~~l 89 (117)
T 3elk_A 19 ILKELV-KRPMHGYELQKSMFETTG-Q-----A--LPQGSIYILLKTMKERGFVISESSVNEKGQQLTVYHITDAGKKFL 89 (117)
T ss_dssp HHHHHH-HSCEEHHHHHHHHHHHHS-C-----C--CCTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEEECHHHHHHH
T ss_pred HHHHHH-cCCCCHHHHHHHHHHHhC-C-----C--CCcchHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECHHHHHHH
Confidence 454443 466654555555443211 1 1 12378899999999999998543 123 24999999999
Q ss_pred hhhhc
Q 032124 133 DCENS 137 (147)
Q Consensus 133 Dri~~ 137 (147)
....+
T Consensus 90 ~~~~~ 94 (117)
T 3elk_A 90 CDHSQ 94 (117)
T ss_dssp HHTST
T ss_pred HHHHH
Confidence 87543
No 130
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=91.14 E-value=0.25 Score=39.60 Aligned_cols=39 Identities=5% Similarity=-0.038 Sum_probs=30.3
Q ss_pred hhHHHHHHHHhHhCCceeeCC--CCCe----eeChhhhhhhhhhh
Q 032124 98 GSVARHILHQLQDTNIIELDS--KGQS----LVLVERLHKLDCEN 136 (147)
Q Consensus 98 gsiiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~~~LDri~ 136 (147)
.+-+=.+++.||+.|||++.+ .++| .||++|+..++.+.
T Consensus 188 ~~tvt~~v~rLe~~GlV~R~~~~~DrR~~~i~LT~~G~~~~~~~~ 232 (250)
T 1p4x_A 188 YPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHAEQLL 232 (250)
T ss_dssp HHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHCCCEEeeCCCCCCCeEEEEECHHHHHHHHHHH
Confidence 355666899999999998654 3555 37999999998764
No 131
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=91.07 E-value=0.18 Score=35.93 Aligned_cols=43 Identities=19% Similarity=0.022 Sum_probs=33.3
Q ss_pred CCCchhHHHHHHHHhHhCCceeeCC----CCC-----eeeChhhhhhhhhhh
Q 032124 94 SKSSGSVARHILHQLQDTNIIELDS----KGQ-----SLVLVERLHKLDCEN 136 (147)
Q Consensus 94 ~~asgsiiR~~LqqLE~~glV~k~~----~~G-----R~lT~~G~~~LDri~ 136 (147)
...|.+.|-.+|+.||+.|||+... .+| -.||++|+..+....
T Consensus 52 ~~is~gtLY~~L~rLe~~GlI~~~~~~~~~~~~~rk~Y~LT~~G~~~l~~~~ 103 (115)
T 2dql_A 52 YRLSDTVLYSAIKFLEDNRAITGYWKKLEGRGRPRRMYQVSPEWQHQAEDLA 103 (115)
T ss_dssp EECCHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEECGGGHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHCCCEEEEeeecCCCCCCcEEEEECHHHHHHHHHHH
Confidence 3566788999999999999998542 124 379999999887654
No 132
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=91.03 E-value=0.18 Score=40.17 Aligned_cols=58 Identities=16% Similarity=0.223 Sum_probs=47.9
Q ss_pred HhHHHHHHHHHH-hCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCC-CCeeeChh
Q 032124 56 IRAASMARKIYL-RGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK-GQSLVLVE 127 (147)
Q Consensus 56 iRaASi~RklYl-~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~-~GR~lT~~ 127 (147)
-|+..||+.|-- .+++++..|.+.-|-.| +-+..+|+.||+.|||++++. +..+|+++
T Consensus 6 ~Ral~IL~~l~~~~~~lsl~eia~~lgl~k--------------sT~~RlL~tL~~~G~v~~~~~~~~Y~lG~~ 65 (260)
T 3r4k_A 6 SKALTLLTYFNHGRLEIGLSDLTRLSGMNK--------------ATVYRLMSELQEAGFVEQVEGARSYRLGPQ 65 (260)
T ss_dssp HHHHHHHTTCBTTBSEEEHHHHHHHHCSCH--------------HHHHHHHHHHHHTTSEEECSSSSEEEECTT
T ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHCcCH--------------HHHHHHHHHHHHCCCEEEcCCCCcEEcCHH
Confidence 378888888876 47899999999887544 889999999999999999876 55677665
No 133
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=90.95 E-value=0.32 Score=33.47 Aligned_cols=53 Identities=11% Similarity=0.092 Sum_probs=41.4
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCe
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQS 122 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR 122 (147)
.||+.|+-.+|+.+..|....+-. +|+ +.+-+-.+|+.||+.|||+..+++.+
T Consensus 14 ~vL~~L~~~~~~t~~el~~~l~~~--~~~--------~~~Tvt~~l~rLe~kGlv~R~~~~r~ 66 (126)
T 1sd4_A 14 DVMNIIWDKKSVSANEIVVEIQKY--KEV--------SDKTIRTLITRLYKKEIIKRYKSENI 66 (126)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHTT--SCC--------CHHHHHHHHHHHHHTTSEEEEEETTE
T ss_pred HHHHHHHhcCCCCHHHHHHHHhhc--CCC--------ChhhHHHHHHHHHHCCceEEEeCCCe
Confidence 377888889999999999998742 232 34778899999999999998765333
No 134
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=90.13 E-value=0.41 Score=31.38 Aligned_cols=44 Identities=11% Similarity=0.130 Sum_probs=35.9
Q ss_pred HHHHHHH-hCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC
Q 032124 61 MARKIYL-RGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS 118 (147)
Q Consensus 61 i~RklYl-~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~ 118 (147)
++..++- .+++.+..|...+|- |.+-++.+|+.||+.|+|+...
T Consensus 26 ~l~~l~~~~~~~t~~ela~~l~i--------------s~~tv~~~l~~L~~~g~v~~~~ 70 (109)
T 2d1h_A 26 VLLKMVEIEKPITSEELADIFKL--------------SKTTVENSLKKLIELGLVVRTK 70 (109)
T ss_dssp HHHHHHHHCSCEEHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHcCCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCeEeec
Confidence 5555655 789999999999874 3478999999999999998764
No 135
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=90.09 E-value=0.52 Score=35.48 Aligned_cols=55 Identities=9% Similarity=0.010 Sum_probs=40.8
Q ss_pred HHHHHHHHh--CCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC--CCCeeeChhh
Q 032124 60 SMARKIYLR--GGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGQSLVLVER 128 (147)
Q Consensus 60 Si~RklYl~--g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~--~~GR~lT~~G 128 (147)
.+|-.|..+ +++.+..++..+|-. ...+|++|++|.++|||+... .||-+|+..-
T Consensus 16 r~l~~La~~~~~~~s~~~IA~~~~is--------------~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p 74 (162)
T 3k69_A 16 HSILYLDAHRDSKVASRELAQSLHLN--------------PVMIRNILSVLHKHGYLTGTVGKNGGYQLDLAL 74 (162)
T ss_dssp HHHHHHHTTTTSCBCHHHHHHHHTSC--------------GGGTHHHHHHHHHTTSSEEECSTTCEEECCSCG
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHCcC--------------HHHHHHHHHHHHHCCCEEeecCCCCCeEecCCh
Confidence 344444443 578899999988753 378999999999999998654 4678887543
No 136
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=90.09 E-value=0.3 Score=37.44 Aligned_cols=62 Identities=19% Similarity=0.176 Sum_probs=43.3
Q ss_pred HHHHHHHHh--CCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC------CCCe-----eeCh
Q 032124 60 SMARKIYLR--GGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS------KGQS-----LVLV 126 (147)
Q Consensus 60 Si~RklYl~--g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~------~~GR-----~lT~ 126 (147)
+|+..|.-+ +...+..|.... ..-|-+-|+.-|+.|+++|+|++.. ..|| .||+
T Consensus 33 ~IL~~Ll~~p~~~~ta~eL~~~l-------------~~lS~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~ 99 (151)
T 3u1d_A 33 DVLHQILAQPDGVLSVEELLYRN-------------PDETEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTG 99 (151)
T ss_dssp HHHHHHHHSTTSCBCHHHHHHHC-------------TTSCHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECH
T ss_pred HHHHHHHcCCCCCCCHHHHHHhc-------------CCCCHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECH
Confidence 455555554 235566665432 1246689999999999999999542 1254 8999
Q ss_pred hhhhhhhh
Q 032124 127 ERLHKLDC 134 (147)
Q Consensus 127 ~G~~~LDr 134 (147)
+|+..|+.
T Consensus 100 ~Gr~~l~~ 107 (151)
T 3u1d_A 100 EGIALLRA 107 (151)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999965
No 137
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=90.06 E-value=0.17 Score=38.78 Aligned_cols=58 Identities=12% Similarity=0.062 Sum_probs=42.4
Q ss_pred HhHHHHHHHHHHhC------CC-chhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeChh
Q 032124 56 IRAASMARKIYLRG------GL-GVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVLVE 127 (147)
Q Consensus 56 iRaASi~RklYl~g------~v-GV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~~ 127 (147)
-.++..+|..-+.| .+ .-..|+..||- |..-+|.||+.||..|||+..+..|-.+++.
T Consensus 10 ~~v~~~l~~~I~~g~l~pG~~LPsE~eLa~~~gV--------------SR~tVReAL~~L~~eGlv~~~~g~G~~V~~~ 74 (239)
T 1hw1_A 10 GFAEEYIIESIWNNRFPPGTILPAERELSELIGV--------------TRTTLREVLQRLARDGWLTIQHGKPTKVNNF 74 (239)
T ss_dssp HHHHHHHHHHHHTTSSCTTSBCCCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEETTEEEEECCH
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCcEEEecCCCcEeeCc
Confidence 34444555544444 23 46778888874 4589999999999999999988778888763
No 138
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=90.02 E-value=0.42 Score=37.72 Aligned_cols=60 Identities=17% Similarity=0.111 Sum_probs=48.0
Q ss_pred HhHHHHHHHHHH-hCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeChhhhh
Q 032124 56 IRAASMARKIYL-RGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVLVERLH 130 (147)
Q Consensus 56 iRaASi~RklYl-~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~~G~~ 130 (147)
-|+..||+.|.- .+++++..|.+..|-.+ +-+..+|+.|++.|||+++ .+.-.|+++...
T Consensus 14 ~r~l~iL~~l~~~~~~~~~~eia~~~gl~~--------------stv~r~l~~L~~~G~v~~~-~~~Y~Lg~~~~~ 74 (257)
T 2g7u_A 14 ERGFAVLLAFDAQRPNPTLAELATEAGLSR--------------PAVRRILLTLQKLGYVAGS-GGRWSLTPRVLS 74 (257)
T ss_dssp HHHHHHHHTCSSSCSSCBHHHHHHHHTCCH--------------HHHHHHHHHHHHTTSEEEE-TTEEEECGGGHH
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHCcCH--------------HHHHHHHHHHHHCCCEEeC-CCEEEEcHHHHH
Confidence 467778877764 36899999999887543 7889999999999999987 366789887643
No 139
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=90.00 E-value=0.43 Score=32.81 Aligned_cols=59 Identities=17% Similarity=0.162 Sum_probs=43.4
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCC-CCeeeChhhhhhhh
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK-GQSLVLVERLHKLD 133 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~-~GR~lT~~G~~~LD 133 (147)
.|+..|+- ++..+..+....|-. .+-+...|+.||+.|+|....+ .+..+|..|...+.
T Consensus 36 ~il~~L~~-~~~s~~ela~~l~is--------------~stvsr~l~~Le~~Glv~~~~~~r~~~~~~~~~~~~~ 95 (119)
T 2lkp_A 36 MILTQLRN-GPLPVTDLAEAIGME--------------QSAVSHQLRVLRNLGLVVGDRAGRSIVYSLYDTHVAQ 95 (119)
T ss_dssp HHHHHHHH-CCCCHHHHHHHHSSC--------------HHHHHHHHHHHHHHCSEEEEEETTEEEEEESCHHHHH
T ss_pred HHHHHHHH-CCCCHHHHHHHHCcC--------------HHHHHHHHHHHHHCCCEEEEecCCEEEEEEchHHHHH
Confidence 36666664 789999999987653 3788999999999999986643 23456766665443
No 140
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP}
Probab=89.90 E-value=0.24 Score=37.35 Aligned_cols=42 Identities=19% Similarity=0.018 Sum_probs=32.5
Q ss_pred CCchhHHHHHHHHhHhCCceeeCCC----CC-----eeeChhhhhhhhhhh
Q 032124 95 KSSGSVARHILHQLQDTNIIELDSK----GQ-----SLVLVERLHKLDCEN 136 (147)
Q Consensus 95 ~asgsiiR~~LqqLE~~glV~k~~~----~G-----R~lT~~G~~~LDri~ 136 (147)
.-+.+.|-.+|+.||+.|||+.... +| -.||++|+..|....
T Consensus 75 ~is~gtLYp~L~rLE~~GlI~~~~~~~~~~g~~rk~Y~LT~~Gr~~l~~~~ 125 (148)
T 2zfw_A 75 RLSDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQANDDRSRDLA 125 (148)
T ss_dssp ECCSHHHHHHHHHHHHTSSEEEECCCCTTSSCCCCEEEESSSSCSTTHHHH
T ss_pred CCChhHHHHHHHHHHHCCCEEEEeeccCCCCCCcEEEEECHHHHHHHHHHH
Confidence 4556789999999999999986431 24 479999998876653
No 141
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=89.72 E-value=0.18 Score=39.00 Aligned_cols=44 Identities=18% Similarity=0.163 Sum_probs=35.9
Q ss_pred hhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceee--CCC--CCeeeChhhhh
Q 032124 73 VGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIEL--DSK--GQSLVLVERLH 130 (147)
Q Consensus 73 V~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k--~~~--~GR~lT~~G~~ 130 (147)
-..|+..||- |..-+|.||+.||..|||+. .+. +|-.+++-...
T Consensus 31 E~~La~~lgV--------------SRtpVREAL~~L~~~GlV~~~~~~~~~~G~~V~~~~~~ 78 (239)
T 2di3_A 31 ERALSETLGV--------------SRSSLREALRVLEALGTISTATGSGPRSGTIITAAPGQ 78 (239)
T ss_dssp HHHHHHHHTC--------------CHHHHHHHHHHHHHHTSEECCSTTSGGGCCEECCCCCS
T ss_pred HHHHHHHHCC--------------CHHHHHHHHHHHHHCCCeEeecccCCCCCceeeCCcch
Confidence 4478888874 45899999999999999999 887 78888875543
No 142
>3l9f_A Putative uncharacterized protein SMU.1604C; PADR, transcription regulator; 1.80A {Streptococcus mutans}
Probab=89.68 E-value=0.23 Score=39.12 Aligned_cols=65 Identities=11% Similarity=0.055 Sum_probs=45.9
Q ss_pred hCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC---CCC-----eeeChhhhhhhhhhhcC
Q 032124 68 RGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS---KGQ-----SLVLVERLHKLDCENSN 138 (147)
Q Consensus 68 ~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~---~~G-----R~lT~~G~~~LDri~~~ 138 (147)
.+|.---.|.+.+...- .++...|-+-|-.+|+.||+.|||+... .+| -.||++|+..|..-...
T Consensus 47 ~~p~~GYeL~~~l~~~~------~~~~~~s~g~lY~~L~rLe~~GlI~~~~~~~~~~p~rk~Y~iT~~Gr~~l~~~l~~ 119 (204)
T 3l9f_A 47 KKERSGYEINDILQNQL------SYFYDGTYGMIYPTLRKLEKDGKITKEVVIQDGRPNKNIYAITESGKKELASYLQS 119 (204)
T ss_dssp SCCEEHHHHHHHHHHTS------TTTEECCTTCHHHHHHHHHHTTSEEEEEECCTTSCCEEEEEECHHHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHHHHh------CCccCCCcchHHHHHHHHHHCCCeEEEeeccCCCCCceEEEEChHHHHHHHHHHhc
Confidence 56665556666665431 2455667788999999999999998542 233 36999999999876543
No 143
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=89.59 E-value=0.32 Score=31.69 Aligned_cols=49 Identities=8% Similarity=0.128 Sum_probs=38.9
Q ss_pred HHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCC
Q 032124 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK 119 (147)
Q Consensus 61 i~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~ 119 (147)
||.-|+-.+|+.+..|....+-. .+ -+.+-+..+|+.||+.|+|+...+
T Consensus 14 vL~~L~~~~~~t~~ei~~~l~~~--~~--------~s~~Tv~~~l~rL~~kGlv~r~~~ 62 (82)
T 1p6r_A 14 VMKVIWKHSSINTNEVIKELSKT--ST--------WSPKTIQTMLLRLIKKGALNHHKE 62 (82)
T ss_dssp HHHHHHTSSSEEHHHHHHHHHHH--SC--------CCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHcCCCCCHHHHHHHHhhc--CC--------ccHHHHHHHHHHHHHCCCeEEEec
Confidence 67777778999999999988742 12 244788999999999999998753
No 144
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=89.56 E-value=0.78 Score=35.98 Aligned_cols=60 Identities=15% Similarity=0.174 Sum_probs=45.4
Q ss_pred hHHhHHHHHHHHHHhCC------C-chhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeCh
Q 032124 54 YYIRAASMARKIYLRGG------L-GVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVLV 126 (147)
Q Consensus 54 ~YiRaASi~RklYl~g~------v-GV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~ 126 (147)
.|...+..+|..-..|- + ....|+..||- |..-+|+||+.|++.|+|+..+..|-.+++
T Consensus 10 ~~~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~v--------------Sr~tvr~Al~~L~~~G~i~~~~g~G~~V~~ 75 (236)
T 3edp_A 10 LFEVIASKIKDSINRDEYKTGMLMPNETALQEIYSS--------------SRTTIRRAVDLLVEEGLVVRKNGVGLYVQP 75 (236)
T ss_dssp HHHHHHHHHHHHHHTTSSCCCC--CCHHHHHHHTTC--------------CHHHHHHHHHHHHHTTSEEEETTTEEEECC
T ss_pred HHHHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEECCceEEEcc
Confidence 35666666776666542 2 56788888874 458999999999999999998877888876
Q ss_pred h
Q 032124 127 E 127 (147)
Q Consensus 127 ~ 127 (147)
.
T Consensus 76 ~ 76 (236)
T 3edp_A 76 K 76 (236)
T ss_dssp C
T ss_pred C
Confidence 4
No 145
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=88.92 E-value=0.83 Score=34.49 Aligned_cols=53 Identities=13% Similarity=0.179 Sum_probs=39.6
Q ss_pred HHHHHHHh---CCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC--CCCeeeChh
Q 032124 61 MARKIYLR---GGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGQSLVLVE 127 (147)
Q Consensus 61 i~RklYl~---g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~--~~GR~lT~~ 127 (147)
+|-.|..+ +|+.+..++..+|- |.+.+|++|++|.++|||+... .||-.|+..
T Consensus 32 ~L~~LA~~~~~~~~s~~eIA~~~~i--------------~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~ 89 (159)
T 3lwf_A 32 ITLELAKRIGDGPISLRSIAQDKNL--------------SEHYLEQLIGPLRNAGIVKSIRGAHGGYVLNGD 89 (159)
T ss_dssp HHHHHHHTTTSCCBCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEECSTTCEEEECSC
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCeEEEecCCCCceEecCC
Confidence 34444443 47889999988775 3489999999999999998654 467888754
No 146
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=88.82 E-value=0.77 Score=29.60 Aligned_cols=46 Identities=9% Similarity=0.081 Sum_probs=37.4
Q ss_pred HHHHHHHHh-CCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCC
Q 032124 60 SMARKIYLR-GGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK 119 (147)
Q Consensus 60 Si~RklYl~-g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~ 119 (147)
.||..|--. +|+.+..|....|-. .+.+.++|+.||+.|+|+..+.
T Consensus 14 ~IL~~L~~~~~~~s~~eLA~~lgls--------------r~tv~~~l~~L~~~G~I~~~~~ 60 (67)
T 2heo_A 14 KILQVLSDDGGPVAIFQLVKKCQVP--------------KKTLNQVLYRLKKEDRVSSPSP 60 (67)
T ss_dssp HHHHHHHHHCSCEEHHHHHHHHCSC--------------HHHHHHHHHHHHHTTSEEEEET
T ss_pred HHHHHHHHcCCCcCHHHHHHHHCcC--------------HHHHHHHHHHHHHCCcEecCCC
Confidence 467766655 589999999998864 4899999999999999987543
No 147
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=88.66 E-value=1.3 Score=34.73 Aligned_cols=60 Identities=15% Similarity=0.176 Sum_probs=45.5
Q ss_pred hHHhHHHHHHHHHHhCC------C-chhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeCh
Q 032124 54 YYIRAASMARKIYLRGG------L-GVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVLV 126 (147)
Q Consensus 54 ~YiRaASi~RklYl~g~------v-GV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~ 126 (147)
.|...+..+|.--..|. + ....|+..||- |..-+|++|++|++.|+|+..+..|-.+++
T Consensus 11 ~~~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~v--------------Sr~tvr~Al~~L~~~G~i~~~~g~G~~V~~ 76 (243)
T 2wv0_A 11 IYYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGI--------------SRMTVRQALSNLVNEGLLYRLKGRGTFVSK 76 (243)
T ss_dssp HHHHHHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEECTTSCEEECC
T ss_pred HHHHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCcEEEeCCCeEEEeC
Confidence 46666766666555542 2 57788888874 458899999999999999998877887775
Q ss_pred h
Q 032124 127 E 127 (147)
Q Consensus 127 ~ 127 (147)
.
T Consensus 77 ~ 77 (243)
T 2wv0_A 77 P 77 (243)
T ss_dssp C
T ss_pred C
Confidence 3
No 148
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=88.56 E-value=0.42 Score=34.70 Aligned_cols=42 Identities=12% Similarity=0.120 Sum_probs=32.0
Q ss_pred CCchhHHHHHHHHhHhCCceeeCC--CCC-----eeeChhhhhhhhhhh
Q 032124 95 KSSGSVARHILHQLQDTNIIELDS--KGQ-----SLVLVERLHKLDCEN 136 (147)
Q Consensus 95 ~asgsiiR~~LqqLE~~glV~k~~--~~G-----R~lT~~G~~~LDri~ 136 (147)
.-+.+.|=.+|+.||+.|||+... .+| -.||++|+..|....
T Consensus 49 ~is~gtlY~~L~rLe~~GlI~~~~~~~~~~~rk~Y~LT~~Gr~~l~~~~ 97 (123)
T 3ri2_A 49 PIEANTLYPLMRRLESQGLLASEWDNGGSKPRKYYRTTDEGLRVLREVE 97 (123)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEEEEECSSCEEEEEEECHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHCCCEEEEeccCCCCCceEEEECHHHHHHHHHHH
Confidence 456678888999999999998542 122 249999999987754
No 149
>2e1n_A PEX, period extender; circadian clock, DNA binding protein, circadian clock protei; 1.80A {Synechococcus elongatus pcc 7942}
Probab=88.18 E-value=0.28 Score=36.37 Aligned_cols=43 Identities=16% Similarity=-0.031 Sum_probs=33.1
Q ss_pred CCCchhHHHHHHHHhHhCCceeeCC----CCC-----eeeChhhhhhhhhhh
Q 032124 94 SKSSGSVARHILHQLQDTNIIELDS----KGQ-----SLVLVERLHKLDCEN 136 (147)
Q Consensus 94 ~~asgsiiR~~LqqLE~~glV~k~~----~~G-----R~lT~~G~~~LDri~ 136 (147)
..-|.+.|-.+|+.||+.|||+... .+| -.||++|+..|....
T Consensus 64 ~~is~gtLYp~L~rLe~~GlI~~~~~~~~~~g~~rk~Y~LT~~Gr~~l~~~~ 115 (138)
T 2e1n_A 64 YRLSDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQANDDRSRDLA 115 (138)
T ss_dssp EECCHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEESCSCCHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHCCCEEEEeecccCCCCCcEEEEECHHHHHHHHHHH
Confidence 3566788999999999999998642 134 379999998876543
No 150
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=87.42 E-value=0.85 Score=30.93 Aligned_cols=44 Identities=14% Similarity=0.178 Sum_probs=38.4
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeC
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELD 117 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~ 117 (147)
.|+..|--+|.+.|..|...|+- |..-||.-|..||+.|+|++.
T Consensus 6 ~Il~~L~~~g~vsv~eLa~~l~V--------------S~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 6 QVRDLLALRGRMEAAQISQTLNT--------------PQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHHSCSBCHHHHHHHTTC--------------CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHcCCCcHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEe
Confidence 46777778899999999998764 558999999999999999987
No 151
>3l09_A Putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG, protein structure initiative transcription regulator; 2.81A {Jannaschia SP}
Probab=87.13 E-value=0.69 Score=38.18 Aligned_cols=67 Identities=15% Similarity=0.061 Sum_probs=51.8
Q ss_pred HhHHHHHHHHHH---h---CCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCC---CeeeCh
Q 032124 56 IRAASMARKIYL---R---GGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKG---QSLVLV 126 (147)
Q Consensus 56 iRaASi~RklYl---~---g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~---GR~lT~ 126 (147)
+|+-|++-.||- . +.+-++.|-...+.- | =+...+|.+|.-|++.||++....| +-.||+
T Consensus 22 ~~a~Sli~tl~Gd~~~~~g~~i~~~~Li~l~~~~---G--------i~~~avR~Al~RL~~~G~l~~~~~Gr~~~Y~Lt~ 90 (266)
T 3l09_A 22 LKLWSVLVTCLGDVSRDGVIEVSGVALSSFVERM---G--------LQPQAMRVALHRLKRDGWVESRRLGRVGFHRLSD 90 (266)
T ss_dssp CCHHHHHHHHHHHHHHTTCCCEEHHHHHHHHHHT---T--------CCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECH
T ss_pred CChhHHHHHHHHHHhccCCCcccHHHHHHHHHHc---C--------CCchHHHHHHHHHHHCCCeeeeecCCcceEEECH
Confidence 688899999993 2 467788876665431 2 2447899999999999999877544 578999
Q ss_pred hhhhhhh
Q 032124 127 ERLHKLD 133 (147)
Q Consensus 127 ~G~~~LD 133 (147)
.|++.++
T Consensus 91 ~g~~~l~ 97 (266)
T 3l09_A 91 SALTQTR 97 (266)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999994
No 152
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=86.91 E-value=0.59 Score=32.78 Aligned_cols=51 Identities=14% Similarity=0.131 Sum_probs=39.7
Q ss_pred HHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCe
Q 032124 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQS 122 (147)
Q Consensus 61 i~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR 122 (147)
||+-|+-.+|+.+..|....+-. ++ -+.+-+..+|+.||+.|||++.+. ||
T Consensus 40 VL~~L~~~~~~t~~eL~~~l~~~--~~--------~s~sTVt~~L~rLe~KGlV~R~~~-gR 90 (99)
T 2k4b_A 40 VMRVIWSLGEARVDEIYAQIPQE--LE--------WSLATVKTLLGRLVKKEMLSTEKE-GR 90 (99)
T ss_dssp HHHHHHHHSCEEHHHHHHTCCGG--GC--------CCHHHHHHHHHHHHHTTSCEEEEE-TT
T ss_pred HHHHHHhCCCCCHHHHHHHHhcc--cC--------CCHhhHHHHHHHHHHCCCEEEEeC-CC
Confidence 67778888999999999987642 12 244778899999999999998753 44
No 153
>3aaf_A Werner syndrome ATP-dependent helicase; helix-turn-helix, winged-helix, protein-DNA complex, DNA-BIN helicase; HET: DNA; 1.90A {Homo sapiens} PDB: 2axl_A
Probab=86.87 E-value=2.7 Score=30.78 Aligned_cols=78 Identities=12% Similarity=0.045 Sum_probs=56.8
Q ss_pred HHHHHHHH-hCCCchhhHHHHhcCCCCCCCCCCCCC--------CCchhHHHHHHHHhHhCCceeeCCCC----C-eeeC
Q 032124 60 SMARKIYL-RGGLGVGSFRRIYGGGKRNGSRPPHFS--------KSSGSVARHILHQLQDTNIIELDSKG----Q-SLVL 125 (147)
Q Consensus 60 Si~RklYl-~g~vGV~~lr~~YGg~krrG~~P~h~~--------~asgsiiR~~LqqLE~~glV~k~~~~----G-R~lT 125 (147)
.+|..||- .+-.|++.+..+.=|+++.-++-.|.. .=+..-+|.++.||...|+++.+... + =.||
T Consensus 20 kiLs~V~r~~~rfG~~~iidvLrGs~~~ki~~~~~~l~tfGigk~~s~~~w~~lirqLi~~G~L~~~~~~~~~~~~L~Lt 99 (134)
T 3aaf_A 20 KLLSAVDILGEKFGIGLPILFLRGSNSQRLADQYRRHSLFGTGKDQTESWWKAFSRQLITEGFLVEVSRYNKFMKICALT 99 (134)
T ss_dssp HHHHHHHHTTTCSCTHHHHHHHTTCCCTTSCGGGGGSTTTTTTTTSCHHHHHHHHHHHHHTTSEEEEECSSTTCEEEEEC
T ss_pred HHHHHHHHHcCcccccchhhhhcCCcHHHHHHHhCCCCccCCCCCCCHHHHHHHHHHHHHcCCceeecCcCccCceEEEC
Confidence 35555653 678999999999999887655431111 12345799999999999999876533 2 7899
Q ss_pred hhhhhhhhhhhc
Q 032124 126 VERLHKLDCENS 137 (147)
Q Consensus 126 ~~G~~~LDri~~ 137 (147)
++|+..|.....
T Consensus 100 ~~g~~vL~~~~~ 111 (134)
T 3aaf_A 100 KKGRNWLHKANT 111 (134)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHhCCcc
Confidence 999999887543
No 154
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=86.85 E-value=0.54 Score=37.31 Aligned_cols=59 Identities=15% Similarity=0.107 Sum_probs=46.8
Q ss_pred HhHHHHHHHHHH-hCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeChhhh
Q 032124 56 IRAASMARKIYL-RGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVLVERL 129 (147)
Q Consensus 56 iRaASi~RklYl-~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~~G~ 129 (147)
-|+..||..|.- .+++++..|....|-.+ +-+..+|+.|++.|||+++ .+...|+++--
T Consensus 21 ~r~l~iL~~l~~~~~~~~~~eia~~~gl~~--------------stv~r~l~tL~~~G~v~~~-~~~Y~Lg~~~~ 80 (265)
T 2ia2_A 21 ARGLAVIRCFDHRNQRRTLSDVARATDLTR--------------ATARRFLLTLVELGYVATD-GSAFWLTPRVL 80 (265)
T ss_dssp HHHHHHHHTCCSSCSSEEHHHHHHHHTCCH--------------HHHHHHHHHHHHHTSEEES-SSEEEECGGGG
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHCcCH--------------HHHHHHHHHHHHCCCEEec-CCEEEEcHHHH
Confidence 477778877754 46899999999887543 7888999999999999997 45667877643
No 155
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=86.84 E-value=0.87 Score=32.32 Aligned_cols=54 Identities=19% Similarity=0.303 Sum_probs=39.7
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCC---eeeChhh
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQ---SLVLVER 128 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~G---R~lT~~G 128 (147)
.|++.|. +++..+..|....|-. .+-+.+.|+.||+.|+|....+|. -.||+++
T Consensus 50 ~IL~~L~-~~~~s~~ela~~lgis--------------~stvs~~L~~Le~~Glv~~~~~gr~~~y~l~~~~ 106 (122)
T 1r1t_A 50 RLLSLLA-RSELCVGDLAQAIGVS--------------ESAVSHQLRSLRNLRLVSYRKQGRHVYYQLQDHH 106 (122)
T ss_dssp HHHHHHT-TCCBCHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEEEETTEEEEEESSHH
T ss_pred HHHHHHH-cCCCCHHHHHHHHCcC--------------HHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHH
Confidence 4666664 6889999999987643 378899999999999998765322 2356555
No 156
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=86.27 E-value=1.4 Score=35.57 Aligned_cols=54 Identities=15% Similarity=0.255 Sum_probs=42.0
Q ss_pred HHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHH-HhHhCCceeeCCCCCeeeChhhhhhhh
Q 032124 65 IYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILH-QLQDTNIIELDSKGQSLVLVERLHKLD 133 (147)
Q Consensus 65 lYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~Lq-qLE~~glV~k~~~~GR~lT~~G~~~LD 133 (147)
.|-.+|+|+..++...|-.. .-++.+.. .|..+|+|+..+ .||++|++|...|.
T Consensus 271 ~~~~~~~~~~~l~~~~~~~~--------------~t~~~~~~~~l~~~g~i~~~~-~gr~~~~~~~~~~~ 325 (334)
T 1in4_A 271 IYRGGPVGLNALAASLGVEA--------------DTLSEVYEPYLLQAGFLARTP-RGRIVTEKAYKHLK 325 (334)
T ss_dssp HSTTCCBCHHHHHHHHTSCH--------------HHHHHHTHHHHHHTTSEEEET-TEEEECHHHHHHTT
T ss_pred HhCCCcchHHHHHHHhCCCc--------------chHHHHHHHHHHHcCCeeccc-ccHHhhHHHHHHhC
Confidence 34457999999999887432 23555555 899999999997 59999999998874
No 157
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=84.79 E-value=0.99 Score=36.12 Aligned_cols=62 Identities=8% Similarity=0.016 Sum_probs=44.0
Q ss_pred HHHHHHHh--CCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeC--CCCCee----eChhhhhhh
Q 032124 61 MARKIYLR--GGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELD--SKGQSL----VLVERLHKL 132 (147)
Q Consensus 61 i~RklYl~--g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~--~~~GR~----lT~~G~~~L 132 (147)
||..||-. +++.+..|....+- .++++- .+|+.||+.|||++. +...|. ||++|+..+
T Consensus 39 vL~~L~~~~~~~~~~~el~~~l~~-------------~~~t~t-~~l~rLe~~G~i~R~~~~~DrR~~~i~LT~~G~~~~ 104 (250)
T 1p4x_A 39 LLTYLFHQQENTLPFKKIVSDLCY-------------KQSDLV-QHIKVLVKHSYISKVRSKIDERNTYISISEEQREKI 104 (250)
T ss_dssp HHHHHHSCSCSEEEHHHHHHHSSS-------------CGGGTH-HHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHHH
T ss_pred HHHHHHhcCCCCcCHHHHHHHHCC-------------CHhhHH-HHHHHHHHCCCEEecCCCCCCCeEEEEECHHHHHHH
Confidence 67777774 47788888875443 234444 589999999999864 344443 899999987
Q ss_pred hhhh
Q 032124 133 DCEN 136 (147)
Q Consensus 133 Dri~ 136 (147)
+.+.
T Consensus 105 ~~~~ 108 (250)
T 1p4x_A 105 AERV 108 (250)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 158
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=84.79 E-value=1 Score=31.37 Aligned_cols=44 Identities=7% Similarity=0.110 Sum_probs=38.3
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeC
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELD 117 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~ 117 (147)
.|+..|--+|.+.|..|...||- |..-||.-|..||+.|+|.+.
T Consensus 6 ~Il~~L~~~g~vsv~eLA~~l~V--------------S~~TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 6 EVRDMLALQGRMEAKQLSARLQT--------------PQPLIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHHSCSEEHHHHHHHTTC--------------CHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHHcCCCcHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEE
Confidence 46777778899999999998874 458999999999999999876
No 159
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=84.14 E-value=0.93 Score=32.96 Aligned_cols=54 Identities=9% Similarity=0.088 Sum_probs=37.8
Q ss_pred HHHHHHHHHh-CCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC-CCCeeeChh
Q 032124 59 ASMARKIYLR-GGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS-KGQSLVLVE 127 (147)
Q Consensus 59 ASi~RklYl~-g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~-~~GR~lT~~ 127 (147)
..+|..|..+ ++ .+..++..++- |-..++++|++|.++|||+... .||-.|+..
T Consensus 12 l~~L~~La~~~~~-s~~~IA~~~~i--------------~~~~l~kIl~~L~~aGlv~s~rG~GGy~Lar~ 67 (145)
T 1xd7_A 12 IHILSLISMDEKT-SSEIIADSVNT--------------NPVVVRRMISLLKKADILTSRAGVPGASLKKD 67 (145)
T ss_dssp HHHHHHHHTCSCC-CHHHHHHHHTS--------------CHHHHHHHHHHHHHTTSEECCSSSSSCEESSC
T ss_pred HHHHHHHHhCCCC-CHHHHHHHHCc--------------CHHHHHHHHHHHHHCCceEeecCCCCceecCC
Confidence 3345555543 23 56667776654 4489999999999999998654 578888754
No 160
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=83.64 E-value=1.7 Score=35.16 Aligned_cols=53 Identities=13% Similarity=0.142 Sum_probs=44.4
Q ss_pred HHhHHHHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCcee-eCCCCCe
Q 032124 55 YIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIE-LDSKGQS 122 (147)
Q Consensus 55 YiRaASi~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~-k~~~~GR 122 (147)
-.|-+..+-.+|..+++++..|.+.+|- |..-||+-|+.||+.|+|+ +.. +|-
T Consensus 6 ~~~~~~~ia~l~~~~~~~~~ela~~l~v--------------S~~tIrRdL~~l~~~G~v~iri~-g~~ 59 (315)
T 2w48_A 6 DIRLIVKIAQLYYEQDMTQAQIARELGI--------------YRTTISRLLKRGREQGIVTIAIN-YDY 59 (315)
T ss_dssp HHHHHHHHHHHHHTSCCCHHHHHHHTTC--------------CHHHHHHHHHHHHHTTSEEEEEC-SSC
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCcEEEEec-CCc
Confidence 4566777888899999999999999885 5689999999999999998 653 443
No 161
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=83.42 E-value=0.79 Score=35.88 Aligned_cols=42 Identities=14% Similarity=0.018 Sum_probs=34.7
Q ss_pred chhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeChh
Q 032124 72 GVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVLVE 127 (147)
Q Consensus 72 GV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~~ 127 (147)
....|+..||- |..-+|++|+.|++.|+|+..+..|-.+++.
T Consensus 31 se~~La~~~~v--------------Sr~tvr~Al~~L~~~g~i~~~~g~G~~V~~~ 72 (239)
T 3bwg_A 31 VLETLMAQFEV--------------SKSTITKSLELLEQKGAIFQVRGSGIFVRKH 72 (239)
T ss_dssp CHHHHHHHTTC--------------CHHHHHHHHHHHHHTTSEEEETTTEEEECCC
T ss_pred CHHHHHHHHCC--------------CHHHHHHHHHHHHHCCcEEEeCCceEEEecC
Confidence 56788888874 4589999999999999999988778777653
No 162
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=82.84 E-value=0.75 Score=36.35 Aligned_cols=59 Identities=10% Similarity=0.044 Sum_probs=41.2
Q ss_pred hHHhHHHHHHHHHHh---C-CC-chhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeChh
Q 032124 54 YYIRAASMARKIYLR---G-GL-GVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVLVE 127 (147)
Q Consensus 54 ~YiRaASi~RklYl~---g-~v-GV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~~ 127 (147)
.|.+.+..++..-.. | .+ ....|+..||- |..-+|+||+.|++.|+|++ +..|-.+++.
T Consensus 15 ~y~~i~~~l~~~I~~~~~g~~lPse~~La~~~~v--------------Sr~tvr~Al~~L~~~G~i~~-~g~Gt~V~~~ 78 (248)
T 3f8m_A 15 KHQVVRAELDRMLDGMRIGDPFPAEREIAEQFEV--------------ARETVRQALRELLIDGRVER-RGRTTVVARP 78 (248)
T ss_dssp HHHHHHHHHHHHHHHCCTTCBCCCHHHHHHHTTC--------------CHHHHHHHHHHHHHTTSEEE-ETTEEEECCC
T ss_pred HHHHHHHHHHHHHhCCCCCCcCcCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEe-CCCEEEEccC
Confidence 455555555443221 1 12 56778888774 55899999999999999999 8778777654
No 163
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=81.93 E-value=2.3 Score=35.04 Aligned_cols=57 Identities=5% Similarity=0.004 Sum_probs=47.7
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeChhhhhhhhh
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVLVERLHKLDC 134 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~LDr 134 (147)
.++|.| ++|..+..|...+|-. ...++..|++|.++|+++... |-++|+.+...|.+
T Consensus 47 ~ll~~L--~~~~t~~eLa~~~g~~--------------~~~v~~~L~~l~~~gll~~~~--~~~lt~~~~~~l~~ 103 (373)
T 2qm3_A 47 NVLSAV--LASDDIWRIVDLSEEP--------------LPLVVAILESLNELGYVTFED--GVKLTEKGEELVAE 103 (373)
T ss_dssp HHHHHH--HHCSCHHHHHHHHTSC--------------HHHHHHHHHHHHHTTSEECSS--SSEECHHHHHHHHH
T ss_pred HHHHHh--cCCCCHHHHHHHhCCC--------------hHHHHHHHHHHhhCCcEEECC--CEEECHHHHHHHHh
Confidence 367888 7899999999988642 368999999999999998754 59999999888876
No 164
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=80.87 E-value=1.8 Score=33.60 Aligned_cols=58 Identities=14% Similarity=0.169 Sum_probs=43.1
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCC----CCe----eeChhhhhh
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK----GQS----LVLVERLHK 131 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~----~GR----~lT~~G~~~ 131 (147)
.|+..| ..+|..+..|....| -|.+-+-..|+.||+.|||+.... +|+ .||+.|...
T Consensus 19 ~IL~~L-~~~~~s~~eLa~~l~--------------is~stvs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~Lt~~~~~~ 83 (202)
T 2p4w_A 19 RILFLL-TKRPYFVSELSRELG--------------VGQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGLRLE 83 (202)
T ss_dssp HHHHHH-HHSCEEHHHHHHHHT--------------CCHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTEEEE
T ss_pred HHHHHH-HhCCCCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCceEEEeeccCCCCceEEEEEChHHHHH
Confidence 467777 479999999999885 455889999999999999986443 133 357766544
Q ss_pred h
Q 032124 132 L 132 (147)
Q Consensus 132 L 132 (147)
+
T Consensus 84 l 84 (202)
T 2p4w_A 84 I 84 (202)
T ss_dssp E
T ss_pred H
Confidence 3
No 165
>2rkh_A Putative APHA-like transcription factor; ZP_00208345.1, STRU genomics, joint center for structural genomics, JCSG; 2.00A {Magnetospirillum magnetotacticum}
Probab=79.43 E-value=0.83 Score=35.44 Aligned_cols=32 Identities=9% Similarity=0.048 Sum_probs=24.0
Q ss_pred HHHHhHhCCceeeCC-CCCe------eeChhhhhhhhhh
Q 032124 104 ILHQLQDTNIIELDS-KGQS------LVLVERLHKLDCE 135 (147)
Q Consensus 104 ~LqqLE~~glV~k~~-~~GR------~lT~~G~~~LDri 135 (147)
+|.+||+.|+|+... .+|| .||++|+..+..-
T Consensus 54 ~l~~Le~~GlI~~~~~~~~rpektvY~ITe~Gr~~l~~~ 92 (180)
T 2rkh_A 54 SIELLRYEGLVEAVDDGQGMEDDAMLAISAAGRRELHSL 92 (180)
T ss_dssp CTHHHHHTTSEECCC--------CEEEECHHHHHHHHHH
T ss_pred HHHHHHHCCCeeeeecCCCCCccceeeeCHHHHHHHHHH
Confidence 789999999997665 4443 7999999988753
No 166
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=79.31 E-value=2.1 Score=29.96 Aligned_cols=44 Identities=16% Similarity=0.123 Sum_probs=36.6
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeC
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELD 117 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~ 117 (147)
.|++.|.-.+++....|...+|- |.+-++..|+.||+.|+|+..
T Consensus 8 ~il~~L~~~~~~~~~ela~~lg~--------------s~~tv~~~l~~L~~~G~i~~~ 51 (141)
T 1i1g_A 8 IILEILEKDARTPFTEIAKKLGI--------------SETAVRKRVKALEEKGIIEGY 51 (141)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTS--------------CHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEecc
Confidence 47777777789999999998864 448899999999999999743
No 167
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=78.96 E-value=1 Score=36.02 Aligned_cols=57 Identities=5% Similarity=0.007 Sum_probs=40.9
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCC---------eeeChhhhh
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQ---------SLVLVERLH 130 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~G---------R~lT~~G~~ 130 (147)
.|++.|. .+|..+..|....| -|.+-+.+.|+.||++|||+.....| -.||+.|..
T Consensus 16 ~IL~~L~-~g~~s~~ELa~~lg--------------lS~stVs~hL~~Le~aGLV~~~~~~gr~~GRp~~~Y~Lt~~~~~ 80 (232)
T 2qlz_A 16 DLLSHLT-CMECYFSLLSSKVS--------------VSSTAVAKHLKIMEREGVLQSYEKEERFIGPTKKYYKISIAKSY 80 (232)
T ss_dssp HHHHHHT-TTTTCSSSSCTTCC--------------CCHHHHHHHHHHHHHTTSEEEEEECC-----CEEEEEECCCEEE
T ss_pred HHHHHHH-hCCCCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCCEEEeeecCCCCCCccEEEEEccchhh
Confidence 4777776 68888887777544 34588999999999999998722223 248887765
Q ss_pred h
Q 032124 131 K 131 (147)
Q Consensus 131 ~ 131 (147)
.
T Consensus 81 ~ 81 (232)
T 2qlz_A 81 V 81 (232)
T ss_dssp E
T ss_pred H
Confidence 4
No 168
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Probab=78.48 E-value=0.87 Score=33.46 Aligned_cols=23 Identities=39% Similarity=0.449 Sum_probs=19.9
Q ss_pred CchhHHHHHHHHhHhCCceeeCC
Q 032124 96 SSGSVARHILHQLQDTNIIELDS 118 (147)
Q Consensus 96 asgsiiR~~LqqLE~~glV~k~~ 118 (147)
=.||+.|.+|+.||+-|+|....
T Consensus 71 I~gSLAR~aLreL~~kGlIk~V~ 93 (108)
T 3u5c_Z 71 IGGSLARIALRHLEKEGIIKPIS 93 (108)
T ss_dssp CCTTHHHHHHHHHSSSSSCEEEE
T ss_pred hhHHHHHHHHHHHHHCCCEEEEe
Confidence 35799999999999999997654
No 169
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=78.15 E-value=4.1 Score=28.66 Aligned_cols=44 Identities=7% Similarity=0.170 Sum_probs=36.6
Q ss_pred HHHHHHHHhCC--CchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeC
Q 032124 60 SMARKIYLRGG--LGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELD 117 (147)
Q Consensus 60 Si~RklYl~g~--vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~ 117 (147)
.|+..|+-.++ +.+..|....|- |.+-+...|+.||+.|+|++.
T Consensus 30 ~il~~L~~~~~~~~t~~eLa~~l~~--------------s~sTV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 30 NVMKSFLNEPDRWIDTDALSKSLKL--------------DVSTVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp HHHHHHHHSTTCCEEHHHHHHHHTS--------------CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHCCCCCcCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEee
Confidence 47777776654 899999998762 568899999999999999875
No 170
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=77.95 E-value=2.7 Score=28.31 Aligned_cols=58 Identities=12% Similarity=0.225 Sum_probs=44.0
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCC---eeeChhhhhhh
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQ---SLVLVERLHKL 132 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~G---R~lT~~G~~~L 132 (147)
.|++.+.-+||..+..+....|-. .+-+.+-|+.||++ +|+...+|. -.||+++...+
T Consensus 31 ~IL~~l~~~~~~~~~ela~~l~is--------------~stvs~hL~~L~~~-lv~~~~~gr~~~y~l~~~~~~~~ 91 (99)
T 2zkz_A 31 KIVNELYKHKALNVTQIIQILKLP--------------QSTVSQHLCKMRGK-VLKRNRQGLEIYYSINNPKVEGI 91 (99)
T ss_dssp HHHHHHHHHSCEEHHHHHHHHTCC--------------HHHHHHHHHHHBTT-TBEEEEETTEEEEECCCHHHHHH
T ss_pred HHHHHHHHCCCcCHHHHHHHHCcC--------------HHHHHHHHHHHHHH-hhhheEeCcEEEEEEChHHHHHH
Confidence 477777778999999999988753 37888999999999 998664332 24677776544
No 171
>3kfw_X Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.50A {Mycobacterium tuberculosis}
Probab=77.60 E-value=2 Score=34.81 Aligned_cols=66 Identities=11% Similarity=0.033 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHh---CCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeChhhhhhhh
Q 032124 57 RAASMARKIYLR---GGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVLVERLHKLD 133 (147)
Q Consensus 57 RaASi~RklYl~---g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~LD 133 (147)
+|=|++=-|++- +++-++.|-...+. -|+ |...+|.+|--|-+.||++... .|..||+.|++.++
T Consensus 4 ~arSlIlsll~g~~g~~i~~~~Li~l~~~---~Gi--------~e~avRtAlsRL~~~G~L~~~~-~GY~LT~~~~~~~~ 71 (247)
T 3kfw_X 4 TARSVVLSVLLGAHPAWATASELIQLTAD---FGI--------KETTLRVALTRMVGAGDLVRSA-DGYRLSDRLLARQR 71 (247)
T ss_dssp CHHHHHHHHHTTTTTSCBCHHHHHHHHTT---TTC--------CHHHHHHHHHHHHHTTSEEEET-TEEEECHHHHHHHH
T ss_pred CCceeeEeeecCCCCCcccHHHHHHHHHH---cCC--------ChHHHHHHHHHHHHcCCeeccC-CceeeCHHHHHHHH
Confidence 445666665542 46777777776542 232 4478999999999999999864 57999999988665
Q ss_pred h
Q 032124 134 C 134 (147)
Q Consensus 134 r 134 (147)
+
T Consensus 72 ~ 72 (247)
T 3kfw_X 72 R 72 (247)
T ss_dssp H
T ss_pred H
Confidence 3
No 172
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=77.22 E-value=0.84 Score=33.53 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=19.4
Q ss_pred chhHHHHHHHHhHhCCceeeCC
Q 032124 97 SGSVARHILHQLQDTNIIELDS 118 (147)
Q Consensus 97 sgsiiR~~LqqLE~~glV~k~~ 118 (147)
.||+.|.+|+.||+-|+|....
T Consensus 73 ~gSLAR~aLreL~~kGlIk~V~ 94 (108)
T 3iz6_V 73 NGSLARQAIKDLESRGAIRVVS 94 (108)
T ss_dssp CCHHHHHHHHHHHHHHTSCEEC
T ss_pred cHHHHHHHHHHHHHCCCEEEEe
Confidence 4799999999999999997654
No 173
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=77.10 E-value=4.5 Score=27.86 Aligned_cols=41 Identities=20% Similarity=0.173 Sum_probs=33.1
Q ss_pred HHHHHHHhC--CCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCcee
Q 032124 61 MARKIYLRG--GLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIE 115 (147)
Q Consensus 61 i~RklYl~g--~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~ 115 (147)
|++.|+-.| ++-...|+..-+- +-..+-+||+.||+.|||.
T Consensus 25 Vl~~I~~~g~~gi~qkeLa~~~~l--------------~~~tvt~iLk~LE~kglIk 67 (91)
T 2dk5_A 25 VYQIIEDAGNKGIWSRDVRYKSNL--------------PLTEINKILKNLESKKLIK 67 (91)
T ss_dssp HHHHHHHHCTTCEEHHHHHHHTTC--------------CHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHcCCCCcCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEE
Confidence 778888855 6777889887553 3377999999999999998
No 174
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=77.01 E-value=0.54 Score=38.94 Aligned_cols=92 Identities=18% Similarity=0.226 Sum_probs=59.9
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCce-eeeccCCCCCCCCCCCchhHH-hHHHHHHHHHHhCCCchhhHHHHhcCCCCCC--
Q 032124 12 PHEFVKAYAAHLKRSGKIELPTWN-DIVKTGTLKELAPYDPDWYYI-RAASMARKIYLRGGLGVGSFRRIYGGGKRNG-- 87 (147)
Q Consensus 12 ~~~fI~~~A~~LK~~gki~~P~W~-d~vKTg~~kElaP~~~DW~Yi-RaASi~RklYl~g~vGV~~lr~~YGg~krrG-- 87 (147)
++.+|++|-+.|.++|-|-+|... ++..... =+.||+.++||-+ |...-.=..-..+..|+|.|...| ++.-|
T Consensus 51 ~~~vi~AL~~~vg~~GTLvmPt~t~~~~dp~~-w~~ppvp~~~~~~ir~~~p~fDp~~tps~~~G~l~E~f--r~~pg~~ 127 (268)
T 3ijw_A 51 AVAVVEALMEVITEEGTIIMPTQSSDLSDPKH-WSRPPVPEEWWQIIRDNVPAFEPHITPTRAMGKVVECF--RTYPNVV 127 (268)
T ss_dssp HHHHHHHHHHHHCTTSEEEEECCCGGGSCGGG-CCSSCCCHHHHHHHHHHSCCBCTTTCCCSSSCHHHHHH--HTSTTCE
T ss_pred HHHHHHHHHHHhCCCCeEEEeccccccCChhh-hcCCCCcHHHHHHHHhhCCCCCcccCcccccChHHHHH--HHCCCCe
Confidence 789999999999999999999864 3443333 3789999998863 322111111112334788888777 34444
Q ss_pred --CCCCCCCCCchhHHHHHHH
Q 032124 88 --SRPPHFSKSSGSVARHILH 106 (147)
Q Consensus 88 --~~P~h~~~asgsiiR~~Lq 106 (147)
..|.+.--|-|.-...+++
T Consensus 128 RS~HP~~Sfaa~G~~A~~i~~ 148 (268)
T 3ijw_A 128 RSNHPLGSFAAWGRHAEEITV 148 (268)
T ss_dssp ECSCTTTCEEEEETTHHHHHT
T ss_pred ecCCCCcceEEeCcCHHHHhc
Confidence 3466666667777766665
No 175
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=76.61 E-value=3 Score=26.87 Aligned_cols=52 Identities=10% Similarity=0.079 Sum_probs=39.7
Q ss_pred HHHHHHHHHh--CCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCC
Q 032124 59 ASMARKIYLR--GGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK 119 (147)
Q Consensus 59 ASi~RklYl~--g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~ 119 (147)
..|+.-|.-. +++.+..|......+ + | .-|-+-|+..|+.||+.|+|.+...
T Consensus 20 ~~IL~~l~~~~~~~~s~~el~~~l~~~---~--~----~is~~TVyR~L~~L~~~Glv~~~~~ 73 (83)
T 2fu4_A 20 LKILEVLQEPDNHHVSAEDLYKRLIDM---G--E----EIGLATVYRVLNQFDDAGIVTRHNF 73 (83)
T ss_dssp HHHHHHHTSGGGSSBCHHHHHHHHHHT---T--C----CCCHHHHHHHHHHHHHHTSEEEEEC
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHh---C--C----CCCHhhHHHHHHHHHHCCCeEEEee
Confidence 4578777654 689999999887432 1 1 3466889999999999999998754
No 176
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=75.44 E-value=4.3 Score=30.50 Aligned_cols=41 Identities=20% Similarity=0.123 Sum_probs=30.5
Q ss_pred hC-CCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCe
Q 032124 68 RG-GLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQS 122 (147)
Q Consensus 68 ~g-~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR 122 (147)
+| |..+..|+..+|-+ +.+ ++..|++||+.|+|+..+.+.|
T Consensus 21 ~g~~~s~~eia~~lgl~-------------~~t-v~~~l~~Le~~G~i~~~~~~~r 62 (196)
T 3k2z_A 21 NGYPPSVREIARRFRIT-------------PRG-ALLHLIALEKKGYIERKNGKPR 62 (196)
T ss_dssp HSSCCCHHHHHHHHTSC-------------HHH-HHHHHHHHHHTTSEECC---TT
T ss_pred hCCCCCHHHHHHHcCCC-------------cHH-HHHHHHHHHHCCCEEecCCCcc
Confidence 45 88999999998854 223 7888999999999998764433
No 177
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=75.03 E-value=5.1 Score=31.81 Aligned_cols=100 Identities=14% Similarity=0.265 Sum_probs=73.3
Q ss_pred ccChhHHHHHHHHHHHHcCCCCCCCceeeec-cCC--------------CCCCCCCCCchhHH-----hHHHHHHHHHHh
Q 032124 9 DVSPHEFVKAYAAHLKRSGKIELPTWNDIVK-TGT--------------LKELAPYDPDWYYI-----RAASMARKIYLR 68 (147)
Q Consensus 9 DV~~~~fI~~~A~~LK~~gki~~P~W~d~vK-Tg~--------------~kElaP~~~DW~Yi-----RaASi~RklYl~ 68 (147)
+-.++.+.+.+...|++.| +.||.+.|+.. +|. ...+-+.++|-||- .++.+++.+.-.
T Consensus 136 ~~~~~~~~~~i~~~~~~~g-~~pp~~~dl~~~l~~~~~~~~~~l~~l~~~g~lv~l~~~~~~~~~~~~~~~~~l~~~~~~ 214 (258)
T 1lva_A 136 SETQKKLLKDLEDKYRVSR-WQPPSFKEVAGSFNLDPSELEELLHYLVREGVLVKINDEFYWHRQALGEAREVIKNLAST 214 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHT-TSCCBHHHHHHHTTCCHHHHHHHHHHHHHTTSEEESSSSBEEEHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHCC-CCCCCHHHHHhHhCCCHHHHHHHHHHHHHCCCEEEecCCeEEcHHHHHHHHHHHHHHHhc
Confidence 3356778888989897655 99998888765 332 23366777887764 566677766545
Q ss_pred CCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeee
Q 032124 69 GGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLV 124 (147)
Q Consensus 69 g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~l 124 (147)
|++.|..+|...|. |.+.+=-+|.-|...|+..... ..|+|
T Consensus 215 ~~it~a~~Rd~lg~--------------SRK~aIplLE~~Dr~g~TrR~g-d~Rvl 255 (258)
T 1lva_A 215 GPFGLAEARDALGS--------------SRKYVLPLLEYLDQVKFTRRVG-DKRVV 255 (258)
T ss_dssp SCBCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEET-TEEEE
T ss_pred CCcCHHHHHHHhCC--------------cHHHHHHHHHHHhhcCceeeeC-CEEee
Confidence 88999999999986 3466668999999999998774 45655
No 178
>2ra5_A Putative transcriptional regulator; beta structure, UTRA domain, structural genomics, PSI-2, protein structure initiative; HET: SRT; 2.40A {Streptomyces coelicolor A3} SCOP: d.190.1.2
Probab=74.84 E-value=0.75 Score=36.25 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=6.5
Q ss_pred chhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeChh
Q 032124 72 GVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVLVE 127 (147)
Q Consensus 72 GV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~~ 127 (147)
....|+..||- |..-+|++|++|++.|+|+..+..|-.+++.
T Consensus 42 se~~La~~~~v--------------Sr~tvr~Al~~L~~~G~i~~~~g~G~~V~~~ 83 (247)
T 2ra5_A 42 NEIELAARLGL--------------SRPTVRQAIQSLVDKGLLVRRRGVGTQVVHS 83 (247)
T ss_dssp ----------------------------------------CEEEEEC---------
T ss_pred CHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEEcCceeEEecc
Confidence 45666666664 4478999999999999999888777777654
No 179
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_8
Probab=72.89 E-value=2.1 Score=32.94 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=19.3
Q ss_pred CchhHHHHHHHHhHhCCceeeC
Q 032124 96 SSGSVARHILHQLQDTNIIELD 117 (147)
Q Consensus 96 asgsiiR~~LqqLE~~glV~k~ 117 (147)
=+||+.|.+|+.||+-|+|...
T Consensus 75 I~gSLARkaLreL~~kGlIk~V 96 (143)
T 2xzm_8 75 VNGSLARQLMRTMADRKLVEKV 96 (143)
T ss_dssp BCHHHHHHHHHHHHHTTSEEEE
T ss_pred chHHHHHHHHHHHHHCCCEEEE
Confidence 3579999999999999999754
No 180
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=72.85 E-value=6.3 Score=28.02 Aligned_cols=43 Identities=14% Similarity=0.193 Sum_probs=36.5
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceee
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIEL 116 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k 116 (147)
.|++.|.-++++.+..|....|- |.+-++..|+.||+.|+|+.
T Consensus 11 ~iL~~L~~~~~~s~~ela~~lg~--------------s~~tv~~~l~~L~~~G~i~~ 53 (150)
T 2w25_A 11 ILVRELAADGRATLSELATRAGL--------------SVSAVQSRVRRLESRGVVQG 53 (150)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTS--------------CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEE
Confidence 47777777899999999998874 34788999999999999974
No 181
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=72.62 E-value=7.4 Score=26.27 Aligned_cols=44 Identities=9% Similarity=0.095 Sum_probs=35.4
Q ss_pred HHHHHHHHhC---CCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeC
Q 032124 60 SMARKIYLRG---GLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELD 117 (147)
Q Consensus 60 Si~RklYl~g---~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~ 117 (147)
.|+.-|--.+ ++-+..|++..|-. .+-|+..|..||+.|+|+..
T Consensus 14 ~IL~~L~~~~pg~~~t~~eLA~~Lgvs--------------r~tV~~~L~~Le~~G~I~~~ 60 (81)
T 1qbj_A 14 RILKFLEELGEGKATTAHDLSGKLGTP--------------KKEINRVLYSLAKKGKLQKE 60 (81)
T ss_dssp HHHHHHHHHCTTCCBCHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCCCCcCHHHHHHHHCcC--------------HHHHHHHHHHHHHCCCEEec
Confidence 3666566677 78899999998843 36799999999999999875
No 182
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=72.36 E-value=3.2 Score=28.75 Aligned_cols=44 Identities=14% Similarity=0.158 Sum_probs=33.8
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS 118 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~ 118 (147)
.||.-|.-+| ..+..|.+..|- |.+-+|+.|+.||+.|+|.+..
T Consensus 21 ~IL~lL~~~g-~sa~eLAk~Lgi--------------Sk~aVr~~L~~Le~eG~I~~~~ 64 (82)
T 1oyi_A 21 EAIKTIGIEG-ATAAQLTRQLNM--------------EKREVNKALYDLQRSAMVYSSD 64 (82)
T ss_dssp HHHHHHSSST-EEHHHHHHHSSS--------------CHHHHHHHHHHHHHHTSSEECS
T ss_pred HHHHHHHHcC-CCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEeCC
Confidence 4554444334 889999998774 3488999999999999998863
No 183
>2ijl_A AGR_C_4647P, molybdenum-binding transcriptional repressor; structural GE DNA-binding protein, PSI-2, PROT structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=70.11 E-value=4.6 Score=29.79 Aligned_cols=37 Identities=16% Similarity=0.093 Sum_probs=28.5
Q ss_pred hHHHHHHHHhHhC---CceeeCCC----CCeeeChhhhhhhhhh
Q 032124 99 SVARHILHQLQDT---NIIELDSK----GQSLVLVERLHKLDCE 135 (147)
Q Consensus 99 siiR~~LqqLE~~---glV~k~~~----~GR~lT~~G~~~LDri 135 (147)
+-+=..+++||+. .|++.... +|-.||+.|+.+++..
T Consensus 53 savS~~I~~LE~~lG~~Lf~R~~~G~~grg~~LT~~G~~ll~~a 96 (135)
T 2ijl_A 53 RRAWLLVDALNHMFRQPVICSQRGGKQGGGAALTVFGAELLERY 96 (135)
T ss_dssp HHHHHHHHHHHHHBSSCSEEECCC------EEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCeeEEecCCCCCCCceeECHHHHHHHHHH
Confidence 5666778999987 88998753 4788999999998764
No 184
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=70.05 E-value=20 Score=28.38 Aligned_cols=87 Identities=20% Similarity=0.197 Sum_probs=62.2
Q ss_pred ccChhHHHHHHHHHHHHcCCCCCCCceeeeccCCCC---CCCCCCCchhHHhHHHHHHHHHHhCCCchhhHHHHhcCCCC
Q 032124 9 DVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLK---ELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKR 85 (147)
Q Consensus 9 DV~~~~fI~~~A~~LK~~gki~~P~W~d~vKTg~~k---ElaP~~~DW~YiRaASi~RklYl~g~vGV~~lr~~YGg~kr 85 (147)
-|+|++|.+++ +.|+. +..| ..+.+=++++ ...|.+.+=...+...++ =-.|++.+..|+..+|=.
T Consensus 113 lVSp~Dl~~A~-~~l~~---Lg~~--~~l~~~~sg~~vvqs~~~~~~~~~~~il~~~---~~~g~vt~~~la~~l~ws-- 181 (218)
T 3cuq_B 113 LLSPEDLVNAC-KMLEA---LKLP--LRLRVFDSGVMVIELQSHKEEEMVASALETV---SEKGSLTSEEFAKLVGMS-- 181 (218)
T ss_dssp CCCHHHHHHHH-HTTTT---TTCS--EEEEECTTSBEEEEETTCCGGGGHHHHHHHH---HHTSCBCHHHHHHHHTCC--
T ss_pred CCCHHHHHHHH-HHHHH---cCCC--EEEEEECCCcEEEEcCCCchHHHHHHHHHHH---HHCCCcCHHHHHHHhCCC--
Confidence 48999999998 55554 5566 5666656554 355655555555544444 346999999999998643
Q ss_pred CCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC
Q 032124 86 NGSRPPHFSKSSGSVARHILHQLQDTNIIELDS 118 (147)
Q Consensus 86 rG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~ 118 (147)
-.+++.+|..+|+.|++=.+.
T Consensus 182 ------------~~~a~e~L~~~e~~G~l~~D~ 202 (218)
T 3cuq_B 182 ------------VLLAKERLLLAEKMGHLCRDD 202 (218)
T ss_dssp ------------HHHHHHHHHHHHHTTSEEEEE
T ss_pred ------------HHHHHHHHHHHHHcCCEEEEC
Confidence 379999999999999997663
No 185
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=69.62 E-value=8.3 Score=27.32 Aligned_cols=43 Identities=16% Similarity=0.153 Sum_probs=36.7
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceee
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIEL 116 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k 116 (147)
.|++.|.-++++.+..|....|- |.+-++..|+.||+.|+|+.
T Consensus 9 ~il~~L~~~~~~s~~ela~~lg~--------------s~~tv~~~l~~L~~~G~i~~ 51 (144)
T 2cfx_A 9 NIIEELKKDSRLSMRELGRKIKL--------------SPPSVTERVRQLESFGIIKQ 51 (144)
T ss_dssp HHHHHHHHCSCCCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCeEE
Confidence 47887877899999999998874 34788999999999999985
No 186
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=69.58 E-value=8 Score=27.89 Aligned_cols=43 Identities=21% Similarity=0.156 Sum_probs=37.2
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceee
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIEL 116 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k 116 (147)
.|++.|.-++++.+..|....|- |.+-++..|+.||+.|+|+.
T Consensus 14 ~il~~L~~~~~~s~~ela~~lg~--------------s~~tv~~~l~~L~~~G~i~~ 56 (162)
T 2p5v_A 14 KILQVLQENGRLTNVELSERVAL--------------SPSPCLRRLKQLEDAGIVRQ 56 (162)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTS--------------CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEee
Confidence 58888888899999999998874 34788999999999999985
No 187
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=69.04 E-value=5.5 Score=28.20 Aligned_cols=43 Identities=7% Similarity=0.087 Sum_probs=36.5
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceee
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIEL 116 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k 116 (147)
.|++.|.-++++.+..|....|- |.+-++..|+.||+.|+|+.
T Consensus 7 ~il~~L~~~~~~~~~ela~~lg~--------------s~~tv~~~l~~L~~~G~i~~ 49 (150)
T 2pn6_A 7 RILKILQYNAKYSLDEIAREIRI--------------PKATLSYRIKKLEKDGVIKG 49 (150)
T ss_dssp HHHHHHTTCTTSCHHHHHHHHTS--------------CHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCcEEE
Confidence 47777777789999999998874 34789999999999999986
No 188
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=68.33 E-value=3.1 Score=35.50 Aligned_cols=34 Identities=12% Similarity=0.119 Sum_probs=28.7
Q ss_pred HHHHHhHhCCceeeCCCCCeeeChhhhhhhhhhhc
Q 032124 103 HILHQLQDTNIIELDSKGQSLVLVERLHKLDCENS 137 (147)
Q Consensus 103 ~~LqqLE~~glV~k~~~~GR~lT~~G~~~LDri~~ 137 (147)
..|++|++.|||+.+. +.=+||++|+-.+|.|++
T Consensus 405 ~~l~~~~~~gll~~~~-~~~~lT~~G~~~~~~i~~ 438 (457)
T 1olt_A 405 KLLAPLAKDGLVDVDE-KGIQVTAKGRLLIRNICM 438 (457)
T ss_dssp HHHHHHHHTTSEEECS-SEEEECTTTGGGHHHHHH
T ss_pred HHHHHHHHCCCEEEEC-CEEEECHhhHHHHHHHHH
Confidence 3478899999999763 567899999999999875
No 189
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=65.89 E-value=8.2 Score=29.50 Aligned_cols=44 Identities=11% Similarity=0.341 Sum_probs=37.1
Q ss_pred HHHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeC
Q 032124 59 ASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELD 117 (147)
Q Consensus 59 ASi~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~ 117 (147)
..|++.|. ++++.+..|....|- |.+-++..|+.||+.|+|+..
T Consensus 23 ~~IL~~L~-~~~~s~~eLA~~lgl--------------S~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 23 RKILKLLR-NKEMTISQLSEILGK--------------TPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHHHHHT-TCCBCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHH-cCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEE
Confidence 35788887 899999999998774 347899999999999999876
No 190
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=64.46 E-value=10 Score=29.68 Aligned_cols=55 Identities=11% Similarity=0.085 Sum_probs=46.4
Q ss_pred CchhHHhHHHHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCC
Q 032124 51 PDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKG 120 (147)
Q Consensus 51 ~DW~YiRaASi~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~ 120 (147)
.|=...|-.+|++-|- +|++.+..+.+.-|-+ =+-++++|.+||+.|+|+..+.|
T Consensus 6 Td~v~erk~~ILE~Lk-~G~~~t~~Iak~LGlS--------------hg~aq~~Ly~LeREG~V~~Vk~G 60 (165)
T 2vxz_A 6 SREVLVRLRDILALLA-DGCKTTSLIQQRLGLS--------------HGRAKALIYVLEKEGRVTRVAFG 60 (165)
T ss_dssp CHHHHHHHHHHHHHHT-TCCEEHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSCEEEEET
T ss_pred hHHHHHHHHHHHHHHH-hCCccHHHHHHHhCCc--------------HHHHHHHHHHHHhcCceEEEEEc
Confidence 3556678888999888 9999999999998853 37899999999999999988644
No 191
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=63.66 E-value=9.4 Score=27.03 Aligned_cols=43 Identities=12% Similarity=0.145 Sum_probs=36.7
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceee
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIEL 116 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k 116 (147)
.|++.|.-++++....|....|- |.+-++..|+.||+.|+|..
T Consensus 13 ~il~~L~~~~~~s~~ela~~lg~--------------s~~tv~~~l~~L~~~G~i~~ 55 (151)
T 2dbb_A 13 QLVKILSENSRLTYRELADILNT--------------TRQRIARRIDKLKKLGIIRK 55 (151)
T ss_dssp HHHHHHHHCTTCCHHHHHHHTTS--------------CHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEE
Confidence 57888888899999999998774 34778999999999999974
No 192
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=62.20 E-value=8.6 Score=27.40 Aligned_cols=43 Identities=14% Similarity=0.259 Sum_probs=37.2
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceee
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIEL 116 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k 116 (147)
.|++.|.-+++..+..|....|- |.+-++..|+.||+.|+|..
T Consensus 11 ~il~~L~~~~~~s~~ela~~lg~--------------s~~tv~~~l~~L~~~G~i~~ 53 (151)
T 2cyy_A 11 KIIKILQNDGKAPLREISKITGL--------------AESTIHERIRKLRESGVIKK 53 (151)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHCS--------------CHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCeEE
Confidence 57888888899999999998874 34789999999999999975
No 193
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=61.91 E-value=5 Score=31.56 Aligned_cols=33 Identities=12% Similarity=0.173 Sum_probs=26.0
Q ss_pred HHHHHHH-HhHhCCceeeCCCCCeeeChhhhhhhh
Q 032124 100 VARHILH-QLQDTNIIELDSKGQSLVLVERLHKLD 133 (147)
Q Consensus 100 iiR~~Lq-qLE~~glV~k~~~~GR~lT~~G~~~LD 133 (147)
-+...++ -|.+.|+|...+ .||++|++|...|.
T Consensus 295 tl~~~l~~~l~~~gli~~~~-~g~~~t~~~~~~~~ 328 (338)
T 3pfi_A 295 TIEDVIEPYLLANGYIERTA-KGRIASAKSYSALK 328 (338)
T ss_dssp HHHHTTHHHHHHTTSEEEET-TEEEECHHHHHHHH
T ss_pred HHHHHHhHHHHHcCceecCC-CcccccHHHHHHhc
Confidence 3443444 788999998875 69999999999885
No 194
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=61.90 E-value=22 Score=28.23 Aligned_cols=51 Identities=10% Similarity=0.019 Sum_probs=40.2
Q ss_pred HhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCC--CeeeChhhhhh
Q 032124 67 LRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKG--QSLVLVERLHK 131 (147)
Q Consensus 67 l~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~--GR~lT~~G~~~ 131 (147)
-.||..+..|....|- +...++..|..|..+|+++...++ .-.+|+.+..+
T Consensus 46 ~~~~~t~~eLA~~~g~--------------~~~~l~r~Lr~L~~~Gll~~~~~~~~~y~~t~~s~~l 98 (374)
T 1qzz_A 46 LAGADTLAGLADRTDT--------------HPQALSRLVRHLTVVGVLEGGEKQGRPLRPTRLGMLL 98 (374)
T ss_dssp HTTCCSHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEECCCC-CCCCEECTTGGGG
T ss_pred hCCCCCHHHHHHHhCc--------------CHHHHHHHHHHHhhCCCEEEeCCCCeEEEEChHHHhh
Confidence 3589999999998774 236899999999999999986555 67888886543
No 195
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=61.43 E-value=12 Score=26.66 Aligned_cols=43 Identities=9% Similarity=0.147 Sum_probs=37.2
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceee
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIEL 116 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k 116 (147)
.|++.|.-++++.+..|....|- |.+-++..|+.||+.|+|..
T Consensus 12 ~il~~L~~~~~~s~~ela~~lg~--------------s~~tv~~~l~~L~~~G~i~~ 54 (152)
T 2cg4_A 12 GILEALMGNARTAYAELAKQFGV--------------SPETIHVRVEKMKQAGIITG 54 (152)
T ss_dssp HHHHHHHHCTTSCHHHHHHHHTS--------------CHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHcCCcce
Confidence 57888888899999999998874 44789999999999999985
No 196
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=59.99 E-value=12 Score=24.62 Aligned_cols=44 Identities=9% Similarity=0.095 Sum_probs=35.1
Q ss_pred HHHHHHHHhC---CCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeC
Q 032124 60 SMARKIYLRG---GLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELD 117 (147)
Q Consensus 60 Si~RklYl~g---~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~ 117 (147)
.|+.-|.-.+ ++-+..|++..|-. .+-|++.|..||+.|+|+..
T Consensus 18 ~IL~~L~~~~~~~~~t~~eLA~~Lgvs--------------~~tV~~~L~~L~~~G~I~~~ 64 (77)
T 1qgp_A 18 RILKFLEELGEGKATTAHDLSGKLGTP--------------KKEINRVLYSLAKKGKLQKE 64 (77)
T ss_dssp HHHHHHHHHCSSSCEEHHHHHHHHCCC--------------HHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHcCCCCCcCHHHHHHHHCcC--------------HHHHHHHHHHHHHCCCEEec
Confidence 3665566677 88899999988843 26789999999999999875
No 197
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=59.92 E-value=19 Score=28.57 Aligned_cols=50 Identities=12% Similarity=0.078 Sum_probs=40.6
Q ss_pred hCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeChhhhhh
Q 032124 68 RGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVLVERLHK 131 (147)
Q Consensus 68 ~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~ 131 (147)
.+|..++.|....|- +...++..|..|..+|+++...++.-.+|+.+..+
T Consensus 50 ~~~~t~~ela~~~~~--------------~~~~l~r~L~~L~~~g~~~~~~~g~y~~t~~s~~l 99 (360)
T 1tw3_A 50 AGARTVKALAARTDT--------------RPEALLRLIRHLVAIGLLEEDAPGEFVPTEVGELL 99 (360)
T ss_dssp TTCCBHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEETTEEEECTTGGGG
T ss_pred CCCCCHHHHHHHhCc--------------CHHHHHHHHHHHHHCCCEEecCCCeEEeCHHHHHH
Confidence 589999999998764 24789999999999999987655667899886543
No 198
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=59.79 E-value=15 Score=27.14 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=37.0
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceee
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIEL 116 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k 116 (147)
.|++.|.-++++.+..|....|- |.+-++..|+.||+.|+|+.
T Consensus 21 ~IL~~L~~~~~~s~~eLA~~lgl--------------S~~tv~~~l~~L~~~G~I~~ 63 (171)
T 2ia0_A 21 NILRLLKKDARLTISELSEQLKK--------------PESTIHFRIKKLQERGVIER 63 (171)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTS--------------CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEe
Confidence 47888888899999999999874 34789999999999999974
No 199
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=58.26 E-value=14 Score=30.09 Aligned_cols=57 Identities=7% Similarity=-0.111 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCcee-eCCCCCeeeChh
Q 032124 57 RAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIE-LDSKGQSLVLVE 127 (147)
Q Consensus 57 RaASi~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~-k~~~~GR~lT~~ 127 (147)
|-..|++.|--.+++.+..|...+|- |..-||+-|+.||+.|++. ..+..|.+|.+.
T Consensus 6 r~~~Il~~L~~~~~~s~~eLa~~l~v--------------S~~ti~r~l~~L~~~G~~i~~~~g~GY~l~~~ 63 (321)
T 1bia_A 6 VPLKLIALLANGEFHSGEQLGETLGM--------------SRAAINKHIQTLRDWGVDVFTVPGKGYSLPEP 63 (321)
T ss_dssp HHHHHHHHHTTSSCBCHHHHHHHHTS--------------CHHHHHHHHHHHHHTTCCCEEETTTEEECSSC
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCC--------------CHHHHHHHHHHHHhCCCcEEEecCCCcEEeec
Confidence 55678887765678999999999874 4578999999999999984 444457777654
No 200
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=58.15 E-value=5.9 Score=29.40 Aligned_cols=36 Identities=8% Similarity=0.013 Sum_probs=24.1
Q ss_pred hHHHHHHHHhHhC---CceeeCCCCCeeeChhhhhhhhhh
Q 032124 99 SVARHILHQLQDT---NIIELDSKGQSLVLVERLHKLDCE 135 (147)
Q Consensus 99 siiR~~LqqLE~~---glV~k~~~~GR~lT~~G~~~LDri 135 (147)
+-+=+.+++||+. .|++.+. +|=.||+.|+.+++..
T Consensus 30 ~avS~~i~~LE~~lg~~Lf~R~~-~~~~lT~~G~~l~~~a 68 (294)
T 1ixc_A 30 PPITRQMQALEADLGVVLLERSH-RGIELTAAGHAFLEDA 68 (294)
T ss_dssp HHHHHHHHHHHHHHTSCCBC------CCBCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCEEEEeCC-CCeeECHhHHHHHHHH
Confidence 4455678888875 7887763 6889999999988754
No 201
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=57.84 E-value=8.9 Score=28.59 Aligned_cols=36 Identities=17% Similarity=0.232 Sum_probs=27.3
Q ss_pred hHHHHHHHHhHhC---CceeeCCCCCeeeChhhhhhhhhh
Q 032124 99 SVARHILHQLQDT---NIIELDSKGQSLVLVERLHKLDCE 135 (147)
Q Consensus 99 siiR~~LqqLE~~---glV~k~~~~GR~lT~~G~~~LDri 135 (147)
+-+=+.+++||+. .|++.+. +|=.||+.|+.+++..
T Consensus 32 ~avS~~i~~LE~~lg~~Lf~R~~-~~~~lT~~G~~l~~~a 70 (306)
T 3hhg_A 32 SAVSRIVKRLEEKLGVNLLNRTT-RQLSLTEEGAQYFRRA 70 (306)
T ss_dssp HHHHHHHHHHHHHHTSCCEETTS-SSCEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCeeEeecC-CCeeECHhHHHHHHHH
Confidence 4455678888864 7888764 6889999999888754
No 202
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=56.93 E-value=35 Score=26.82 Aligned_cols=52 Identities=13% Similarity=0.104 Sum_probs=43.0
Q ss_pred hCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeChhhhhhhh
Q 032124 68 RGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVLVERLHKLD 133 (147)
Q Consensus 68 ~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~LD 133 (147)
.||+.+..|....|- +...++.+|..|..+|+++.++++.-.+|+.++.+.+
T Consensus 36 ~g~~t~~elA~~~~~--------------~~~~l~rlLr~l~~~gl~~~~~~~~y~~t~~s~~l~~ 87 (332)
T 3i53_A 36 AGHRTAAEIASAAGA--------------HADSLDRLLRHLVAVGLFTRDGQGVYGLTEFGEQLRD 87 (332)
T ss_dssp TTCCBHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEECTTSBEEECTTGGGGST
T ss_pred cCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHhCCcEEecCCCeEEcCHhHHHHhc
Confidence 479999999998763 2357999999999999999876677899999887643
No 203
>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold, transcription; 1.75A {Escherichia coli} SCOP: a.4.5.8 b.40.6.2 b.40.6.2 PDB: 1b9n_A 1o7l_A 1h9s_A 1h9r_A 1h9s_B
Probab=56.77 E-value=10 Score=29.04 Aligned_cols=63 Identities=14% Similarity=0.169 Sum_probs=36.6
Q ss_pred HhHHHHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhC---CceeeCCC----CCeeeChhh
Q 032124 56 IRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDT---NIIELDSK----GQSLVLVER 128 (147)
Q Consensus 56 iRaASi~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~---glV~k~~~----~GR~lT~~G 128 (147)
.+-..++.++.-.|.+. .-.+.-| +.+ +-+=..+++||+. .|++..+. +|..||+.|
T Consensus 22 ~~~l~~f~~v~~~gs~~--~aa~~l~------~s~--------~~~s~~i~~le~~lg~~L~~R~~~~lsg~~~~lt~~g 85 (265)
T 1b9m_A 22 PRRISLLKHIALSGSIS--QGAKDAG------ISY--------KSAWDAINEMNQLSEHILVERATGGKGGGGAVLTRYG 85 (265)
T ss_dssp HHHHHHHHHHHHHSSHH--HHHHHHT------CCH--------HHHHHHHHHHHHHHTSCCEEECCCC-----EEECHHH
T ss_pred HHHHHHHHHHHHhCCHH--HHHHHhC------CCH--------HHHHHHHHHHHHHhCCCeEEecCCCCCCCceEECHHH
Confidence 34456777777777642 2222222 221 2222335666553 78998864 589999999
Q ss_pred hhhhhh
Q 032124 129 LHKLDC 134 (147)
Q Consensus 129 ~~~LDr 134 (147)
+.++.+
T Consensus 86 ~~l~~~ 91 (265)
T 1b9m_A 86 QRLIQL 91 (265)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998865
No 204
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=55.91 E-value=8 Score=32.39 Aligned_cols=28 Identities=21% Similarity=0.144 Sum_probs=21.8
Q ss_pred CCchhHHHHHHHHhHhCCceeeCCCCCee
Q 032124 95 KSSGSVARHILHQLQDTNIIELDSKGQSL 123 (147)
Q Consensus 95 ~asgsiiR~~LqqLE~~glV~k~~~~GR~ 123 (147)
.-|..-+|+.|++|++.|++++.. .||.
T Consensus 322 gvS~~Ta~r~L~~L~e~GiL~~~~-~gR~ 349 (373)
T 2qc0_A 322 LAKRQTASVYLKQLCDIGVLEEVQ-SGKE 349 (373)
T ss_dssp SSCHHHHHHHHHHHHHTTSCEEC---CCS
T ss_pred CCCHHHHHHHHHHHHHCCcEEEec-CCCc
Confidence 456688999999999999999874 4554
No 205
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=53.78 E-value=10 Score=28.45 Aligned_cols=36 Identities=14% Similarity=0.074 Sum_probs=27.4
Q ss_pred hHHHHHHHHhHhC---CceeeCCCCCeeeChhhhhhhhhh
Q 032124 99 SVARHILHQLQDT---NIIELDSKGQSLVLVERLHKLDCE 135 (147)
Q Consensus 99 siiR~~LqqLE~~---glV~k~~~~GR~lT~~G~~~LDri 135 (147)
+-+=+.+++||+. .|.+.+. +|=.||+.|+.+++..
T Consensus 39 ~avS~~I~~LE~~lg~~Lf~R~~-~~~~lT~~G~~l~~~a 77 (310)
T 2esn_A 39 SAFSHALGRLRQGLDDELFLRQG-NRMQPTQRAEHLAAAV 77 (310)
T ss_dssp HHHHHHHHHHHHHHTSCCEEEET-TEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCcceeecC-CCccccHHHHHHHHHH
Confidence 4455677888874 7888774 6889999999887653
No 206
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=53.08 E-value=11 Score=27.54 Aligned_cols=36 Identities=6% Similarity=0.036 Sum_probs=26.8
Q ss_pred hHHHHHHHHhHhC---CceeeCCCCCeeeChhhhhhhhhh
Q 032124 99 SVARHILHQLQDT---NIIELDSKGQSLVLVERLHKLDCE 135 (147)
Q Consensus 99 siiR~~LqqLE~~---glV~k~~~~GR~lT~~G~~~LDri 135 (147)
+-+=+.+++||+. .|.+.+. +|=.||+.|+.+++..
T Consensus 30 ~avS~~i~~LE~~lg~~Lf~R~~-~~~~lT~~G~~l~~~a 68 (291)
T 3szp_A 30 ATITRRIQALEDSLNLRLLNRHA-RKLTLTEAGERFYKDC 68 (291)
T ss_dssp HHHHHHHHHHHHHHTCCCEEEET-TEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCceEeecC-CCcccCHhHHHHHHHH
Confidence 3445567888864 7888874 6889999999988643
No 207
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=52.75 E-value=18 Score=26.73 Aligned_cols=43 Identities=14% Similarity=0.259 Sum_probs=37.2
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceee
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIEL 116 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k 116 (147)
.|++.|.-++.+.+..|....|- |.+-++.-|+.||+.|+|+.
T Consensus 31 ~IL~~L~~~~~~s~~eLA~~lgl--------------S~~tv~~rl~~L~~~G~I~~ 73 (171)
T 2e1c_A 31 KIIKILQNDGKAPLREISKITGL--------------AESTIHERIRKLRESGVIKK 73 (171)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTS--------------CHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCeEe
Confidence 58888888899999999999874 34778999999999999975
No 208
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=52.43 E-value=32 Score=26.91 Aligned_cols=51 Identities=10% Similarity=0.006 Sum_probs=41.9
Q ss_pred hCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeChhhhhhh
Q 032124 68 RGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVLVERLHKL 132 (147)
Q Consensus 68 ~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~L 132 (147)
.||..+..|....|- +...++..|..|..+|+++...++.-.+|+.++.++
T Consensus 39 ~~~~t~~ela~~~~~--------------~~~~l~r~Lr~L~~~g~l~~~~~~~y~~t~~s~~l~ 89 (334)
T 2ip2_A 39 SGIDSDETLAAAVGS--------------DAERIHRLMRLLVAFEIFQGDTRDGYANTPTSHLLR 89 (334)
T ss_dssp TTCCSHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHTTS
T ss_pred CCCCCHHHHHHHhCc--------------CHHHHHHHHHHHHhCCceEecCCCeEecCHHHHHHh
Confidence 489999999988764 237899999999999999987556788998887655
No 209
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=52.28 E-value=23 Score=26.36 Aligned_cols=58 Identities=12% Similarity=0.018 Sum_probs=44.6
Q ss_pred HhHHHHHHHHHHh-CCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCc-eeeCCCCCeeeChhh
Q 032124 56 IRAASMARKIYLR-GGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNI-IELDSKGQSLVLVER 128 (147)
Q Consensus 56 iRaASi~RklYl~-g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~gl-V~k~~~~GR~lT~~G 128 (147)
-|.-.|++.|.-+ +++.+..|...+| -|.+-||.=|+.||+.|+ |... .+|..|++..
T Consensus 21 ~R~~~Il~~L~~~~~~~s~~eLa~~l~--------------vS~~Ti~rdi~~L~~~G~~I~~~-~~Gy~l~~~~ 80 (187)
T 1j5y_A 21 ERLKSIVRILERSKEPVSGAQLAEELS--------------VSRQVIVQDIAYLRSLGYNIVAT-PRGYVLAGGK 80 (187)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHHT--------------SCHHHHHHHHHHHHHHTCCCEEE-TTEEECCTTT
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCCeEEEE-CCEEEECCcc
Confidence 3666788777654 5799999999986 345788999999999999 8765 3677777643
No 210
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=51.17 E-value=15 Score=27.54 Aligned_cols=35 Identities=11% Similarity=0.135 Sum_probs=26.9
Q ss_pred hHHHHHHHHhHhC---CceeeCCCCCeeeChhhhhhhhhh
Q 032124 99 SVARHILHQLQDT---NIIELDSKGQSLVLVERLHKLDCE 135 (147)
Q Consensus 99 siiR~~LqqLE~~---glV~k~~~~GR~lT~~G~~~LDri 135 (147)
+-+=+.+++||+. .|.+.+ + |-.||+.|+.+++..
T Consensus 35 ~avS~~i~~LE~~lg~~Lf~R~-~-~~~lT~~G~~l~~~a 72 (303)
T 3isp_A 35 SAVSQRIKSLEQQVGQVLVVRE-K-PCRATTAGIPLLRLA 72 (303)
T ss_dssp HHHHHHHHHHHHHHTSCCEECS-S-SCEECGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCeeEEcC-C-CCeeCchHHHHHHHH
Confidence 4455677888864 788886 4 899999999988764
No 211
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=50.77 E-value=12 Score=25.62 Aligned_cols=20 Identities=15% Similarity=0.232 Sum_probs=18.0
Q ss_pred hHHHHHHHHhHhCCceeeCC
Q 032124 99 SVARHILHQLQDTNIIELDS 118 (147)
Q Consensus 99 siiR~~LqqLE~~glV~k~~ 118 (147)
+.|.++|=.||+.|+|.+.+
T Consensus 44 ~~vNr~LY~L~kkG~V~~~~ 63 (75)
T 1sfu_A 44 KKINQQLYKLQKEDTVKMVP 63 (75)
T ss_dssp HHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHHHCCCEecCC
Confidence 67999999999999998875
No 212
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=50.54 E-value=12 Score=31.68 Aligned_cols=48 Identities=15% Similarity=0.069 Sum_probs=31.8
Q ss_pred HHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCee
Q 032124 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSL 123 (147)
Q Consensus 61 i~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~ 123 (147)
++..|+-.+-+.++.+.+..| .|..-+++.|++|+++|++++.. +||.
T Consensus 302 ll~~l~~~p~~t~~~~~~~~~--------------~S~~TA~r~L~~L~e~GiL~~~~-~gR~ 349 (373)
T 3eqx_A 302 LVQVIFEQPYCRIQNLVESGL--------------AKRQTASVYLKQLCDIGVLEEVQ-SGKE 349 (373)
T ss_dssp HHHHHHHCSEEEHHHHHHTSS--------------SCHHHHHHHHHHHHHTTSCEEC---CCS
T ss_pred HHHHHHHCCCccHHHHHHHhC--------------cCHHHHHHHHHHHHHCCcEEEeC-CCCc
Confidence 555555555555665555433 35567899999999999999874 4553
No 213
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=50.52 E-value=16 Score=27.46 Aligned_cols=36 Identities=8% Similarity=0.018 Sum_probs=27.9
Q ss_pred hHHHHHHHHhHh---CCceeeCCCCCeeeChhhhhhhhhh
Q 032124 99 SVARHILHQLQD---TNIIELDSKGQSLVLVERLHKLDCE 135 (147)
Q Consensus 99 siiR~~LqqLE~---~glV~k~~~~GR~lT~~G~~~LDri 135 (147)
+-+=+.+++||+ ..|.+.+. +|=.||+.|+.+++..
T Consensus 31 ~avS~~i~~LE~~lg~~Lf~R~~-r~~~lT~~G~~l~~~a 69 (305)
T 3fxq_A 31 PALSAAIQQLEDELKAPLLVRTK-RGVSLTSFGQAFMKHA 69 (305)
T ss_dssp HHHHHHHHHHHHHHTSCSEEECS-SSEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCeeEEecC-CCccCCHhHHHHHHHH
Confidence 455667888886 47888874 6889999999988753
No 214
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=50.35 E-value=25 Score=27.07 Aligned_cols=50 Identities=8% Similarity=0.104 Sum_probs=34.4
Q ss_pred CCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeChhhhhhhh
Q 032124 70 GLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVLVERLHKLD 133 (147)
Q Consensus 70 ~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~LD 133 (147)
++++..+++..|-. ...+-|++-+-|...|+|+..+ .||.+|+.|.+.|.
T Consensus 264 ~~~~~~~a~~lgi~-------------~~tl~~~l~~~~i~~~li~~~~-~g~~~~~~~~~~~~ 313 (324)
T 1hqc_A 264 PVGLATLATALSED-------------PGTLEEVHEPYLIRQGLLKRTP-RGRVPTELAYRHLG 313 (324)
T ss_dssp CCCHHHHHHHTTSC-------------HHHHHHHTHHHHHHTTSEEEET-TEEEECHHHHHHTT
T ss_pred CchHHHHHHHhCCC-------------HHHHHHHHhHHHHHhcchhcCC-ccceecHHHHHHHh
Confidence 55666666655421 1234444444488899999875 79999999999884
No 215
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=49.08 E-value=26 Score=28.88 Aligned_cols=54 Identities=13% Similarity=0.102 Sum_probs=42.3
Q ss_pred HHHHHHHHh-C-CCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCc-eeeCCCCCeeeChh
Q 032124 60 SMARKIYLR-G-GLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNI-IELDSKGQSLVLVE 127 (147)
Q Consensus 60 Si~RklYl~-g-~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~gl-V~k~~~~GR~lT~~ 127 (147)
.||+.|... + ++..+.|+..+|- |..-|++.+++|++.|+ |+..+..|-+|.+.
T Consensus 7 ~iL~~L~~~~g~~~Sg~eLa~~lgv--------------Sr~aV~k~i~~L~~~G~~i~~~~~~GY~L~~~ 63 (323)
T 3rkx_A 7 DVLQLLYKNKPNYISGQSIAESLNI--------------SRTAVKKVIDQLKLEGCKIDSVNHKGHLLQQL 63 (323)
T ss_dssp HHHHHHHHHTTSCBCHHHHHHHHTS--------------CHHHHHHHHHHHHHTTCEEEEETTTEEEEEEC
T ss_pred HHHHHHHhCCCCccCHHHHHHHHCC--------------CHHHHHHHHHHHHhcCCeEEEeCCCeEEEecC
Confidence 578878653 3 7889999998885 44789999999999999 55556678888753
No 216
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=48.57 E-value=7.5 Score=29.01 Aligned_cols=35 Identities=3% Similarity=-0.053 Sum_probs=18.2
Q ss_pred HHHHHHHhHhC---CceeeCCCCCeeeChhhhhhhhhh
Q 032124 101 ARHILHQLQDT---NIIELDSKGQSLVLVERLHKLDCE 135 (147)
Q Consensus 101 iR~~LqqLE~~---glV~k~~~~GR~lT~~G~~~LDri 135 (147)
+=+.+++||+. .|.+.+..+|=.||+.|+.+++..
T Consensus 35 vS~~i~~LE~~lg~~Lf~R~~~~~~~lT~~G~~l~~~a 72 (306)
T 3fzv_A 35 ISTAVKGLEESFGVQLFIRHHAQGVSLTPAGARFYRKA 72 (306)
T ss_dssp HHHHHHHHHHHC-CCCC---------CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCeeEeecCCCCceECHhHHHHHHHH
Confidence 44567777764 566664235778888888887653
No 217
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=48.24 E-value=5.7 Score=28.89 Aligned_cols=43 Identities=9% Similarity=0.125 Sum_probs=32.2
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceee
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIEL 116 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k 116 (147)
.|+..|--.+.+....|...+|-+ .+-+|.+|+.||+.|+|+.
T Consensus 17 ~Il~~l~~~~~ls~~eLa~~lgvS--------------r~~vr~al~~L~~~Gli~~ 59 (163)
T 2gqq_A 17 NILNELQKDGRISNVELSKRVGLS--------------PTPCLERVRRLERQGFIQG 59 (163)
T ss_dssp HHHHHHHHCSSCCTTGGGTSSSCC--------------TTTSSSTHHHHHHHTSEEE
T ss_pred HHHHHHHhCCCCCHHHHHHHHCcC--------------HHHHHHHHHHHHHCCcEEE
Confidence 466644445677888888877643 3668999999999999984
No 218
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=47.93 E-value=22 Score=28.16 Aligned_cols=52 Identities=12% Similarity=0.142 Sum_probs=40.5
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeCh
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVLV 126 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~ 126 (147)
+++=.++.+|+..+..|+...|- +.+.++..|..|++.|+|++.. +|++.-.
T Consensus 168 ~~l~~~l~~~~~t~~~la~~~~l--------------~~~~V~~~l~~L~~~~~v~~~~-~~~~~~~ 219 (232)
T 2qlz_A 168 AILHYLLLNGRATVEELSDRLNL--------------KEREVREKISEMARFVPVKIIN-DNTVVLD 219 (232)
T ss_dssp HHHHHHHHSSEEEHHHHHHHHTC--------------CHHHHHHHHHHHTTTSCEEEET-TTEEEEC
T ss_pred HHHHHHHhcCCCCHHHHHHHhCc--------------CHHHHHHHHHHHHhcCCeEEec-CCeEEec
Confidence 34445667899999999998763 4599999999999999998664 5666543
No 219
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=46.76 E-value=58 Score=28.66 Aligned_cols=78 Identities=8% Similarity=-0.076 Sum_probs=55.2
Q ss_pred HHHHHHHHH----HhCCCchhhHHHHhcCCCCCCCC-CCC-CCCCchhHHHHHHHHhHhCCceeeCCC---CC----eee
Q 032124 58 AASMARKIY----LRGGLGVGSFRRIYGGGKRNGSR-PPH-FSKSSGSVARHILHQLQDTNIIELDSK---GQ----SLV 124 (147)
Q Consensus 58 aASi~RklY----l~g~vGV~~lr~~YGg~krrG~~-P~h-~~~asgsiiR~~LqqLE~~glV~k~~~---~G----R~l 124 (147)
|-.++.-|| ..+..|+..+...+-|+++.-++ ..| ...-+..-++.++.||-..|+++.+.. -+ =.|
T Consensus 446 ~~~~l~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~ 525 (591)
T 2v1x_A 446 CRDLIKILKQAEELNEKLTPLKLIDSWMGKGAAKLRVAGVVAPTLPREDLEKIIAHFLIQQYLKEDYSFTAYATISYLKI 525 (591)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHTTCSCGGGCCTTCCCCSCCHHHHHHHHHHHHHTTSEEEEEEECSSCEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHhCCCchHHHhcCCCcCcCCHHHHHHHHHHHHHcCCcEEecccCCCceeEEeeE
Confidence 334555555 46789999999998887654433 222 345577789999999999999987532 12 259
Q ss_pred Chhhhhhhhhh
Q 032124 125 LVERLHKLDCE 135 (147)
Q Consensus 125 T~~G~~~LDri 135 (147)
|++++..|...
T Consensus 526 ~~~~~~~~~~~ 536 (591)
T 2v1x_A 526 GPKANLLNNEA 536 (591)
T ss_dssp CGGGGGGGSTT
T ss_pred CHHHHHHhcCC
Confidence 99999887643
No 220
>2a4a_A Deoxyribose-phosphate aldolase; lyase, TIM beta/alpha barrel, DEOC, DERA, structur genomics, structural genomics consortium, SGC; 1.84A {Plasmodium yoelii yoelii} SCOP: c.1.10.1
Probab=46.12 E-value=15 Score=30.48 Aligned_cols=13 Identities=38% Similarity=0.299 Sum_probs=10.9
Q ss_pred eeeeccCCCCCCC
Q 032124 35 NDIVKTGTLKELA 47 (147)
Q Consensus 35 ~d~vKTg~~kEla 47 (147)
+|||||+++..-.
T Consensus 186 ADfVKTSTGf~~~ 198 (281)
T 2a4a_A 186 ADFIKTSTGKVQI 198 (281)
T ss_dssp CSEEECCCSCSSC
T ss_pred CCEEEeCCCCCCC
Confidence 8999999998743
No 221
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=45.34 E-value=24 Score=29.34 Aligned_cols=47 Identities=15% Similarity=0.135 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeC
Q 032124 57 RAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELD 117 (147)
Q Consensus 57 RaASi~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~ 117 (147)
....|++.|+-++|+....|.+..|=+ .+-+.+++++|++.|+|+..
T Consensus 40 n~~~il~~l~~~~~~sr~ela~~~gls--------------~~tv~~~v~~L~~~gli~~~ 86 (429)
T 1z05_A 40 NAGRVYKLIDQKGPISRIDLSKESELA--------------PASITKITRELIDAHLIHET 86 (429)
T ss_dssp HHHHHHHHHHHHCSBCHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHCCC--------------HHHHHHHHHHHHHCCCEEec
Confidence 345699999999999999999987754 37789999999999999765
No 222
>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}
Probab=44.48 E-value=6.4 Score=29.57 Aligned_cols=58 Identities=14% Similarity=0.082 Sum_probs=42.1
Q ss_pred CCchhHHhHHHHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC
Q 032124 50 DPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS 118 (147)
Q Consensus 50 ~~DW~YiRaASi~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~ 118 (147)
+.||-++|. ||+||+|--+..-.|=.+ .-+..-.+...++.|..+..||++..-.+..
T Consensus 46 ~~~W~~~Rn-------~IhGPlg~lr~~m~~l~~----~Llp~dqk~A~~lak~l~~~L~~LD~AA~~~ 103 (130)
T 3zsu_A 46 KGDWQEARN-------IMRGPLGEMLMDMRALNR----NLLAKDQPTPTALTRALTDDFLKIDQGADLD 103 (130)
T ss_dssp TTCHHHHHH-------HHHTHHHHHHHHHHHHHH----TSCGGGSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hcchHHHHH-------HHhchHHHHHHHHHHHHH----hcCHhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 569999997 999998766555444221 1244566777899999999999988766554
No 223
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=44.41 E-value=27 Score=28.56 Aligned_cols=45 Identities=13% Similarity=0.169 Sum_probs=38.8
Q ss_pred HHHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeC
Q 032124 59 ASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELD 117 (147)
Q Consensus 59 ASi~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~ 117 (147)
..|++.|+-++|+....|.+..|=+ .+-+.+++++|++.|+|+..
T Consensus 19 ~~il~~l~~~~~~sr~~la~~~~ls--------------~~tv~~~v~~L~~~g~i~~~ 63 (406)
T 1z6r_A 19 GAVYRLIDQLGPVSRIDLSRLAQLA--------------PASITKIVHEMLEAHLVQEL 63 (406)
T ss_dssp HHHHHHHHSSCSCCHHHHHHHTTCC--------------HHHHHHHHHHHHHHTSEEEC
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCC--------------HHHHHHHHHHHHHCCcEEee
Confidence 5699999999999999999987643 47889999999999999764
No 224
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=44.14 E-value=25 Score=25.41 Aligned_cols=43 Identities=14% Similarity=0.231 Sum_probs=36.8
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceee
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIEL 116 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k 116 (147)
.|++.|--++++.+..|....|- |.+-+|.-++.||+.|+|..
T Consensus 7 ~il~~L~~~~~~s~~~la~~lg~--------------s~~tv~~rl~~L~~~g~i~~ 49 (162)
T 3i4p_A 7 KILRILQEDSTLAVADLAKKVGL--------------STTPCWRRIQKMEEDGVIRR 49 (162)
T ss_dssp HHHHHHTTCSCSCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHCCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCeee
Confidence 47777877899999999998874 45889999999999999974
No 225
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=43.77 E-value=19 Score=29.39 Aligned_cols=43 Identities=9% Similarity=0.151 Sum_probs=37.1
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeC
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELD 117 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~ 117 (147)
.|++.|+ ++|+.-..|.+..|=+ .+-+-+++++|++.|+|+..
T Consensus 24 ~il~~l~-~~~~sr~~la~~~gls--------------~~tv~~~v~~L~~~gli~~~ 66 (380)
T 2hoe_A 24 RILKRIM-KSPVSRVELAEELGLT--------------KTTVGEIAKIFLEKGIVVEE 66 (380)
T ss_dssp CSHHHHH-HSCBCHHHHHHHHTCC--------------HHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHH-cCCcCHHHHHHHHCcC--------------HHHHHHHHHHHHHCCCEEee
Confidence 4899999 9999999999987754 37788999999999999754
No 226
>3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A
Probab=42.66 E-value=42 Score=26.87 Aligned_cols=49 Identities=20% Similarity=0.246 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCceeeeccCCCCC-CCCCCCchhHHhHHHHHHHHHHhCCCch
Q 032124 12 PHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKE-LAPYDPDWYYIRAASMARKIYLRGGLGV 73 (147)
Q Consensus 12 ~~~fI~~~A~~LK~~gki~~P~W~d~vKTg~~kE-laP~~~DW~YiRaASi~RklYl~g~vGV 73 (147)
.++.|...++--.+.| +|||||+++.. ...-. +....++|+. +.+++||
T Consensus 144 t~eei~~a~~ia~~aG-------ADfVKTSTGf~~~~gAt-----~edv~lm~~~-v~~~v~V 193 (231)
T 3ndo_A 144 GEPLLADVCRVARDAG-------ADFVKTSTGFHPSGGAS-----VQAVEIMART-VGERLGV 193 (231)
T ss_dssp CHHHHHHHHHHHHHTT-------CSEEECCCSCCTTCSCC-----HHHHHHHHHH-HTTTSEE
T ss_pred CHHHHHHHHHHHHHHC-------cCEEEcCCCCCCCCCCC-----HHHHHHHHHH-hCCCceE
Confidence 4556666666666666 89999999875 23222 3455566664 2344444
No 227
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=41.83 E-value=41 Score=30.60 Aligned_cols=95 Identities=14% Similarity=0.134 Sum_probs=60.5
Q ss_pred cccChhHHHHHHHHHHHHcCCCCCCCc-eeeeccCCCCCCCCCCCchhHHhHHHHHHHHHHhCCCchhhHHHHhcCC-CC
Q 032124 8 KDVSPHEFVKAYAAHLKRSGKIELPTW-NDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGG-KR 85 (147)
Q Consensus 8 kDV~~~~fI~~~A~~LK~~gki~~P~W-~d~vKTg~~kElaP~~~DW~YiRaASi~RklYl~g~vGV~~lr~~YGg~-kr 85 (147)
-.|.+++|.+++ +.|+. +..|.= .-.+..|...- + .|+.-.=.+.|+.-+=-.|++.+..|+..+|+. -+
T Consensus 453 elISp~Dll~A~-~~le~---Lg~~~~~L~~~~sgvlVv--s--~~~~~~~~~~il~l~~~~g~vT~~~la~~lg~~~~~ 524 (566)
T 1w7p_D 453 GLISPMEMREAC-ERFEH---LGLNELKLVKVNKRILCV--T--SEKFDVVKEKLVDLIGDNPGSDLLRLTQILSSNNSK 524 (566)
T ss_dssp CCCCHHHHHHHH-TTGGG---GTCTTCEEEECSSSCEEE--E--SSCHHHHHHHHHHHHTTSTTCCHHHHHHHHSCSSSC
T ss_pred CccCHHHHHHHH-HHHHH---cCCCeEEEEEECCEEEEE--c--CCCchHHHHHHHHHHHhcCCcCHHHHHHHhCCcccc
Confidence 478999999988 55554 334532 22223343332 2 234323345555544346899999999999943 23
Q ss_pred CCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC
Q 032124 86 NGSRPPHFSKSSGSVARHILHQLQDTNIIELDS 118 (147)
Q Consensus 86 rG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~ 118 (147)
++ =+-.+++.+|+.+|+.|++=.++
T Consensus 525 ~~--------Ws~~~A~e~L~~~e~eG~l~rDd 549 (566)
T 1w7p_D 525 SN--------WTLGILMEVLQNCVDEGDLLIDK 549 (566)
T ss_dssp CC--------BCHHHHHHHHHHHHHTTSEEEEE
T ss_pred Cc--------ccHHHHHHHHHHHHHcCCEEEEC
Confidence 33 34489999999999999996663
No 228
>3sma_A FRBF; N-acetyl transferase, acetyl COA binding, transferase; HET: ACO; 2.00A {Streptomyces rubellomurinus}
Probab=40.67 E-value=21 Score=29.69 Aligned_cols=87 Identities=18% Similarity=0.401 Sum_probs=58.8
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCcee-eeccCCCCCCCCCCCchhHHhHHHHHHH-H-----HHhCCCchhhHHHHhcCCC
Q 032124 12 PHEFVKAYAAHLKRSGKIELPTWND-IVKTGTLKELAPYDPDWYYIRAASMARK-I-----YLRGGLGVGSFRRIYGGGK 84 (147)
Q Consensus 12 ~~~fI~~~A~~LK~~gki~~P~W~d-~vKTg~~kElaP~~~DW~YiRaASi~Rk-l-----Yl~g~vGV~~lr~~YGg~k 84 (147)
++.+|++|-+.|.++|-|-+|.+.- +.++. .=+.||..++||=+ +|. . -..+.-|+|.|...| ++
T Consensus 58 a~~vi~AL~~~vg~~GTLvmPt~t~~~~d~~-~~~~p~vp~~w~~~-----ir~~~p~fDp~~Tps~~mG~l~E~f--R~ 129 (286)
T 3sma_A 58 AQAVVLALQDAVGKEGTLVMPTFSGDLSDPS-TWRRPPVPEDWWPV-----IREQMPPFDPDLTPTRGMGAVAECF--RR 129 (286)
T ss_dssp HHHHHHHHHHHHCTTCEEEEECCCTTSSCGG-GCCSSCCCGGGHHH-----HHHHCCCCCTTTCCCSSSCHHHHHH--TT
T ss_pred HHHHHHHHHHHhcCCCEEEEeccCcccCChh-hhcCCCCcHHHHHH-----HHhhCCCCCcccCcccccChhHHHH--Hh
Confidence 7899999999999999999998542 33333 34578888899842 333 1 122334788888887 44
Q ss_pred CCCC----CCCCCCCCchhHHHHHHH
Q 032124 85 RNGS----RPPHFSKSSGSVARHILH 106 (147)
Q Consensus 85 rrG~----~P~h~~~asgsiiR~~Lq 106 (147)
.-|+ .|.+.--|-|.-...+++
T Consensus 130 ~pgv~RS~HP~~SfaA~G~~A~~i~~ 155 (286)
T 3sma_A 130 AAGAVRSGHPQNSFAAWGAHAEQVVA 155 (286)
T ss_dssp STTCEECSCTTTCEEEEETTHHHHHT
T ss_pred CCCceecCCCCCCEEEecCCHHHHhc
Confidence 4443 466666666777776665
No 229
>2e9x_B DNA replication complex GINS protein PSF2; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.2 d.344.1.2 PDB: 2eho_C* 2q9q_A*
Probab=40.34 E-value=11 Score=29.47 Aligned_cols=20 Identities=35% Similarity=0.582 Sum_probs=16.7
Q ss_pred HHHHHHHHcCC--CCCCCceee
Q 032124 18 AYAAHLKRSGK--IELPTWNDI 37 (147)
Q Consensus 18 ~~A~~LK~~gk--i~~P~W~d~ 37 (147)
-+|-+||+.++ |.+|+|..+
T Consensus 47 WLAl~Lkk~~kc~I~~P~Wl~~ 68 (185)
T 2e9x_B 47 WLAINLKQRQKCRLLPPEWMDV 68 (185)
T ss_dssp HHHHHHHHTTSEEECCCTTCCH
T ss_pred HHHHHHHhCCceEEECCcccCH
Confidence 47899999977 889999654
No 230
>1bm9_A RTP, TER, replication terminator protein; DNA-binding protein, contrahelicase; 2.00A {Bacillus subtilis} SCOP: a.4.5.7 PDB: 1f4k_A 1j0r_A 2dpd_A 2dpu_A 2efw_A* 2dqr_A
Probab=39.41 E-value=29 Score=25.56 Aligned_cols=33 Identities=18% Similarity=0.095 Sum_probs=24.8
Q ss_pred hhHHHHHHHHhHhCCceeeCCC---CC-------eeeChhhhh
Q 032124 98 GSVARHILHQLQDTNIIELDSK---GQ-------SLVLVERLH 130 (147)
Q Consensus 98 gsiiR~~LqqLE~~glV~k~~~---~G-------R~lT~~G~~ 130 (147)
-+-+=-+|..||+.|+|+.... +. -.||++|+.
T Consensus 54 ~gtlYp~L~rLe~~Gll~~~~~~~~g~~r~~rkyY~lT~~G~~ 96 (122)
T 1bm9_A 54 HTEVYRSLHELLDDGILKQIKVKKEGAKLQEVVLYQFKDYEAA 96 (122)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEECTTSTTCEEEEEEESCHHHH
T ss_pred cccHHHHHHHHHHCCCeEEEEeecCCCCCCceeEEEEChhhhh
Confidence 3556679999999999975432 22 369999998
No 231
>2nyg_A YOKD protein; PFAM02522, NYSGXRC, aminoglycoside 3-N- acetyltransferase, PSI-2, structural genomics, protein structure initiative; HET: COA; 2.60A {Bacillus subtilis} SCOP: c.140.1.2
Probab=39.14 E-value=9.5 Score=31.31 Aligned_cols=87 Identities=16% Similarity=0.250 Sum_probs=58.6
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCceee-eccCCCCCCCCCCCchhHHhHHHHHHH---HHH--hCCC--chhhHHHHhcCC
Q 032124 12 PHEFVKAYAAHLKRSGKIELPTWNDI-VKTGTLKELAPYDPDWYYIRAASMARK---IYL--RGGL--GVGSFRRIYGGG 83 (147)
Q Consensus 12 ~~~fI~~~A~~LK~~gki~~P~W~d~-vKTg~~kElaP~~~DW~YiRaASi~Rk---lYl--~g~v--GV~~lr~~YGg~ 83 (147)
++.+|++|-+.|.++|-|-+|.+..- .++. .=+.||+.++||= ++|. .|= ..|. ++|.|...|-
T Consensus 49 ~~~vi~AL~~~vg~~GTLvmPtft~~~~dp~-~w~~~p~~~~~~~-----~ir~~~p~fDp~~Tps~~~mG~l~E~fR-- 120 (273)
T 2nyg_A 49 AVAVIQALIDVVTEEGTIVMPSQSVELSDPK-EWGNPPVPEEWWD-----IIRESMPAYNSNYTPTTRGMGQIVELFR-- 120 (273)
T ss_dssp HHHHHHHHHHHHTTTSEEEEECCCTTSSCGG-GCCSSCCCGGGTT-----HHHHSCCCCCTTTCCCCGGGCHHHHHHT--
T ss_pred HHHHHHHHHHHhCCCCeEEEeccccccCChh-hhcCCCCcHHHHH-----HHHhhcCCCCcccCCcccccChHHHHHH--
Confidence 78999999999999999999988643 2222 2367899889983 3443 221 1366 8999988875
Q ss_pred CCCC----CCCCCCCCCchhHHHHHHH
Q 032124 84 KRNG----SRPPHFSKSSGSVARHILH 106 (147)
Q Consensus 84 krrG----~~P~h~~~asgsiiR~~Lq 106 (147)
+.-| ..|.+.--|-|.-...+++
T Consensus 121 ~~pgv~RS~HP~~SfaA~G~~A~~i~~ 147 (273)
T 2nyg_A 121 SYPEVKRSNHPNYSFVAWGKHKNKILN 147 (273)
T ss_dssp TSTTCEECSCSSSCEEEEETTHHHHHS
T ss_pred hCCCCcccCCCCcceEEeCcCHHHHhc
Confidence 3333 3465555566776666654
No 232
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=38.89 E-value=6.4 Score=30.02 Aligned_cols=34 Identities=12% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHHHHhHhC---CceeeCCCCCeeeChhhhhhhhhh
Q 032124 101 ARHILHQLQDT---NIIELDSKGQSLVLVERLHKLDCE 135 (147)
Q Consensus 101 iR~~LqqLE~~---glV~k~~~~GR~lT~~G~~~LDri 135 (147)
+=+.+++||+. .|++.+. +|=.||+.|+.+++..
T Consensus 32 vS~~I~~LE~~lg~~Lf~R~~-r~~~lT~~G~~l~~~a 68 (312)
T 2h9b_A 32 LSRQIQNLEEELGIQLLERGS-RPVKTTPEGHFFYQYA 68 (312)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHhCCEeEeeCC-CCceECHHHHHHHHHH
Confidence 34567888876 6777763 5788999999887754
No 233
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=37.40 E-value=39 Score=26.23 Aligned_cols=51 Identities=12% Similarity=-0.037 Sum_probs=41.4
Q ss_pred CCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeChhhhhhhhh
Q 032124 69 GGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVLVERLHKLDC 134 (147)
Q Consensus 69 g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~LDr 134 (147)
||..+..|...-|-. ...++..|..|..+|+++.. .+.-.+|+.+.+.|..
T Consensus 38 ~~~t~~ela~~~~~~--------------~~~l~r~L~~L~~~g~l~~~-~~~y~~t~~~~~~l~~ 88 (335)
T 2r3s_A 38 GIESSQSLAQKCQTS--------------ERGMRMLCDYLVIIGFMTKQ-AEGYRLTSDSAMFLDR 88 (335)
T ss_dssp SEECHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEE-TTEEEECHHHHHHTCT
T ss_pred CCCCHHHHHHHhCCC--------------chHHHHHHHHHHhcCCeEec-CCEEecCHHHHHHhcc
Confidence 789999999987642 47899999999999999875 4678899988655543
No 234
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=37.13 E-value=37 Score=27.46 Aligned_cols=50 Identities=10% Similarity=0.041 Sum_probs=40.5
Q ss_pred hCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCC-eeeChhhhhh
Q 032124 68 RGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQ-SLVLVERLHK 131 (147)
Q Consensus 68 ~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~G-R~lT~~G~~~ 131 (147)
.||+.+..|...-|- +...+|.+|..|..+|+++.++++. -.+|+.++.+
T Consensus 69 ~g~~t~~eLA~~~g~--------------~~~~l~rlLr~L~~~g~l~~~~~~~~y~~t~~s~~L 119 (369)
T 3gwz_A 69 EGPRTATALAEATGA--------------HEQTLRRLLRLLATVGVFDDLGHDDLFAQNALSAVL 119 (369)
T ss_dssp TSCEEHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSSEECSSTTEEECCHHHHTT
T ss_pred CCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHhCCCEEEeCCCceEecCHHHHHH
Confidence 478999999988763 2346999999999999999876555 6899988874
No 235
>4eiv_A Deoxyribose-phosphate aldolase; chemotherapy, brain cysts, bradyzoite, structural genomics, for structural genomics of infectious diseases; 1.37A {Toxoplasma gondii} PDB: 3qyq_A*
Probab=35.57 E-value=45 Score=28.10 Aligned_cols=33 Identities=12% Similarity=0.067 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCceeeeccCCCCCCCCCCC
Q 032124 12 PHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDP 51 (147)
Q Consensus 12 ~~~fI~~~A~~LK~~gki~~P~W~d~vKTg~~kElaP~~~ 51 (147)
.++.|...++--.+.| +|||||++++.-..-.+
T Consensus 164 ~~e~i~~A~~ia~~AG-------ADFVKTSTGf~~~gAT~ 196 (297)
T 4eiv_A 164 GGDIISRAAVAALEGG-------ADFLQTSSGLGATHATM 196 (297)
T ss_dssp CHHHHHHHHHHHHHHT-------CSEEECCCSSSSCCCCH
T ss_pred cHHHHHHHHHHHHHhC-------CCEEEcCCCCCCCCCCH
Confidence 3455544445444544 89999999997655554
No 236
>2v0f_A Chromodomain-helicase-DNA-binding protein 7; nucleotide-binding, chromatin regulator, charge syndrome, phosphorylation, disease mutation; NMR {Homo sapiens} SCOP: d.76.2.1
Probab=35.26 E-value=3.7 Score=29.03 Aligned_cols=24 Identities=33% Similarity=0.549 Sum_probs=19.8
Q ss_pred HHHHHHHHHHc-CCCCCCCceeeec
Q 032124 16 VKAYAAHLKRS-GKIELPTWNDIVK 39 (147)
Q Consensus 16 I~~~A~~LK~~-gki~~P~W~d~vK 39 (147)
.+.|..+|+++ +-...|+|+++||
T Consensus 38 l~~L~~WL~~nP~y~v~p~w~~~v~ 62 (87)
T 2v0f_A 38 MKDLPRWLEENPEFAVAPDWTDIVK 62 (87)
T ss_dssp GGGHHHHHHHCTTEEECHHHHHHHH
T ss_pred hHHHHHHHHHCCCceechhHHHHHH
Confidence 35688999999 5557899999997
No 237
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=34.53 E-value=12 Score=23.73 Aligned_cols=38 Identities=8% Similarity=-0.117 Sum_probs=27.0
Q ss_pred CCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeChhhhhhhhhhh
Q 032124 90 PPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVLVERLHKLDCEN 136 (147)
Q Consensus 90 P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~LDri~ 136 (147)
|...+.|+|++|. .--..-...|++...+|+..+|+|-
T Consensus 11 ~C~~C~GsG~~i~---------~~C~~C~G~G~v~~~~G~~~~~~~~ 48 (53)
T 3lcz_A 11 TCPNCNGSGREEP---------EPCPKCLGKGVILTAQGSTLLHFIK 48 (53)
T ss_dssp ECTTTTTSCEETT---------EECTTTTTSSEEECHHHHHHHHHHH
T ss_pred cCcCCcccccCCC---------CcCCCCCCcEEEEEEeCchHHHHHH
Confidence 5677889998884 1111222458999999999999984
No 238
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=34.42 E-value=37 Score=25.81 Aligned_cols=45 Identities=16% Similarity=0.240 Sum_probs=34.9
Q ss_pred HHhHHH-HHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceee
Q 032124 55 YIRAAS-MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIEL 116 (147)
Q Consensus 55 YiRaAS-i~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k 116 (147)
+-|||- +|.-|+.++|+.-..+..+.|-. +..++++|.+.|||+.
T Consensus 92 LS~aaLEtLaiIay~qPiTR~eI~~irGv~-----------------~~~~v~~L~e~glI~e 137 (162)
T 1t6s_A 92 LSRSMLEVLAVVAWHQPVTKGEIQQIRGAS-----------------PDYSIDRLLARGLIEV 137 (162)
T ss_dssp HHHHHHHHHHHHHHHCSEEHHHHHHHHTCC-----------------CCSHHHHHHHTTSEEE
T ss_pred cCHHHHHHHHHHHHcCCcCHHHHHHHHCCC-----------------HHHHHHHHHHCCCEEE
Confidence 344443 89999999999999999997742 2346778999999974
No 239
>3mz1_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative, MI center for STR uctural genomics, MCSG; 1.88A {Sinorhizobium meliloti}
Probab=34.10 E-value=8.5 Score=28.23 Aligned_cols=34 Identities=9% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHhHhC---CceeeCCCCCeeeChhhhhhhhhh
Q 032124 101 ARHILHQLQDT---NIIELDSKGQSLVLVERLHKLDCE 135 (147)
Q Consensus 101 iR~~LqqLE~~---glV~k~~~~GR~lT~~G~~~LDri 135 (147)
+=+.+++||+. .|.+.+. +|=.||+.|+.+++..
T Consensus 29 vS~~i~~LE~~lg~~Lf~R~~-~~~~lT~~G~~l~~~a 65 (300)
T 3mz1_A 29 VTNLIQGLEAHLRTKLLNRTT-RRVLVTPDGALYYERA 65 (300)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHhCCeeEecCC-CceeeCHhHHHHHHHH
Confidence 33456777764 6666653 5778999998887654
No 240
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=33.28 E-value=9 Score=29.33 Aligned_cols=31 Identities=16% Similarity=0.073 Sum_probs=0.0
Q ss_pred HHHHHhHhC---CceeeCCCCCeeeChhhhhhhhh
Q 032124 103 HILHQLQDT---NIIELDSKGQSLVLVERLHKLDC 134 (147)
Q Consensus 103 ~~LqqLE~~---glV~k~~~~GR~lT~~G~~~LDr 134 (147)
+.+++||+. .|.+.+. +|=.||+.|+.+++.
T Consensus 47 ~~I~~LE~~lg~~Lf~R~~-r~~~lT~~G~~l~~~ 80 (315)
T 1uth_A 47 NSLKRLRTALNDDLFLRTS-KGMEPTPYALHLAEP 80 (315)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHHHhCCcceeecC-CCccCCHHHHHHHHH
Confidence 445666664 5565553 466777777777654
No 241
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=32.36 E-value=31 Score=24.34 Aligned_cols=34 Identities=9% Similarity=0.172 Sum_probs=25.6
Q ss_pred CchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC
Q 032124 71 LGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS 118 (147)
Q Consensus 71 vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~ 118 (147)
+.++.|+..- .-|.+-+..+|+.||+.|+|+...
T Consensus 52 ps~~~LA~~l--------------~~s~~~V~~~l~~Le~kGlI~~~~ 85 (128)
T 2vn2_A 52 PTPAELAERM--------------TVSAAECMEMVRRLLQKGMIAIEE 85 (128)
T ss_dssp CCHHHHHHTS--------------SSCHHHHHHHHHHHHHTTSSEECC
T ss_pred CCHHHHHHHH--------------CcCHHHHHHHHHHHHHCCCEEEEe
Confidence 5666776643 334577888999999999999865
No 242
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=32.25 E-value=9.5 Score=29.40 Aligned_cols=34 Identities=9% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHHHHHHhHhC---CceeeCCCCCeeeChhhhhhhhhh
Q 032124 101 ARHILHQLQDT---NIIELDSKGQSLVLVERLHKLDCE 135 (147)
Q Consensus 101 iR~~LqqLE~~---glV~k~~~~GR~lT~~G~~~LDri 135 (147)
+=+.+++||+. .|++.+. +|=.||+.|+.+++..
T Consensus 32 vS~~I~~LE~~lG~~Lf~R~~-r~v~lT~~G~~l~~~a 68 (313)
T 2h98_A 32 LSRQIQKLEEELGIQLFERGF-RPAKVTEAGMFFYQHA 68 (313)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHhCCeeEEcCC-CCeEECHhHHHHHHHH
Confidence 34567888876 6777764 5888999999888754
No 243
>1i96_V Translation initiation factor IF3; 30S ribosome; HET: WO2; 4.20A {Thermus thermophilus} SCOP: d.68.1.1
Probab=31.88 E-value=26 Score=24.38 Aligned_cols=31 Identities=10% Similarity=0.182 Sum_probs=24.0
Q ss_pred CCchhHHHHHHHHhHhCCceeeCCC-CCeeeC
Q 032124 95 KSSGSVARHILHQLQDTNIIELDSK-GQSLVL 125 (147)
Q Consensus 95 ~asgsiiR~~LqqLE~~glV~k~~~-~GR~lT 125 (147)
.-.-.++..+.+.|+..+-||+.|+ .||.++
T Consensus 48 e~g~~lL~r~~~~l~d~~~ve~~pk~eGr~m~ 79 (89)
T 1i96_V 48 ELGERILNRVTEDLKDLAVVEMKPEMLGRDMN 79 (89)
T ss_pred HHHHHHHHHHHHHhhhheEEecCccccCCEEE
Confidence 3345788999999999999998874 577543
No 244
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=31.56 E-value=44 Score=22.07 Aligned_cols=34 Identities=26% Similarity=0.535 Sum_probs=26.9
Q ss_pred CCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceee
Q 032124 69 GGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIEL 116 (147)
Q Consensus 69 g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k 116 (147)
|-+-|..+++.||=.| .-+=.+|..||+-|+|.-
T Consensus 24 GildI~~~a~kygV~k--------------deV~~~LrrLe~KGLI~l 57 (59)
T 2xvc_A 24 GFLDIEHFSKVYGVEK--------------QEVVKLLEALKNKGLIAV 57 (59)
T ss_dssp SEEEHHHHHHHHCCCH--------------HHHHHHHHHHHHTTSEEE
T ss_pred CEEeHHHHHHHhCCCH--------------HHHHHHHHHHHHCCCeec
Confidence 3456788999998655 567789999999999863
No 245
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A
Probab=31.39 E-value=32 Score=25.80 Aligned_cols=58 Identities=17% Similarity=0.290 Sum_probs=40.3
Q ss_pred CCchhHHhHHHHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC
Q 032124 50 DPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS 118 (147)
Q Consensus 50 ~~DW~YiRaASi~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~ 118 (147)
+.||-++|. ||+||+|--+..-.|=.+. -+....+...++.|..+..||++..-.+..
T Consensus 49 ~~~W~~~Rn-------~IhGPlg~lr~~m~~l~~~----Llp~dqk~A~~lak~l~~~L~~LD~AA~~~ 106 (133)
T 3ls0_A 49 DQNWVDTQT-------YIHGPLGQLRRDMLGLASS----LLPKDQDKAKTLAKEVFGHLERLDAAAKDR 106 (133)
T ss_dssp TTCHHHHHH-------HHHTTTTTHHHHHHHHHHH----SCHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hcchHHHHH-------HHhchHHHHHHHHHHHHHh----cChhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 569999997 9999998665554442211 123344566789999999999987766554
No 246
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=30.84 E-value=35 Score=24.74 Aligned_cols=42 Identities=24% Similarity=0.370 Sum_probs=25.6
Q ss_pred chhHHHHHHHHhHhCCceeeCCCCCeeeChhhhhhhhhhhcCCcc
Q 032124 97 SGSVARHILHQLQDTNIIELDSKGQSLVLVERLHKLDCENSNGMD 141 (147)
Q Consensus 97 sgsiiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~LDri~~~~~~ 141 (147)
|..-+=.+|++|++.|+|+... +.|+=.=...|-++|..|-+
T Consensus 188 sr~tvsR~l~~L~~~g~I~~~~---~~i~i~d~~~L~~~a~~~~~ 229 (231)
T 3e97_A 188 SRETVSRVLKRLEAHNILEVSP---RSVTLLDLAALEALSFEGAE 229 (231)
T ss_dssp CHHHHHHHHHHHHHTTSEEECS---SCEEESCHHHHHHCC-----
T ss_pred cHHHHHHHHHHHHHCCcEEecC---CEEEEeCHHHHHHHHhcccC
Confidence 4466778999999999998762 34443334556666666644
No 247
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.79 E-value=24 Score=24.76 Aligned_cols=44 Identities=16% Similarity=0.070 Sum_probs=32.9
Q ss_pred HHHHHHHhCC--CchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC
Q 032124 61 MARKIYLRGG--LGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS 118 (147)
Q Consensus 61 i~RklYl~g~--vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~ 118 (147)
|+..|.-.|. +=...|++.-+-. -.++-+||+.||..+||...+
T Consensus 42 Vy~~I~~aGn~GIw~kdL~~~tnL~--------------~~~vtkiLK~LE~k~lIK~Vk 87 (95)
T 2yu3_A 42 VYQIIEDAGNKGIWSRDVRYKSNLP--------------LTEINKILKNLESKKLIKAVK 87 (95)
T ss_dssp HHHHHHHHTTSCEEHHHHHHHHTCC--------------HHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHhCCCCCCHHHHHHHhCCC--------------HHHHHHHHHHHHhCCCEEEec
Confidence 6666667666 4456888876532 278999999999999998654
No 248
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=30.43 E-value=63 Score=25.70 Aligned_cols=50 Identities=14% Similarity=0.137 Sum_probs=40.4
Q ss_pred hCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeChhhhhhh
Q 032124 68 RGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVLVERLHKL 132 (147)
Q Consensus 68 ~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~L 132 (147)
.||+.+..|...-|-. ...+|.+|..|..+|+++. ..+.-.+|+.++.++
T Consensus 53 ~g~~t~~elA~~~g~~--------------~~~l~rlLr~l~~~g~l~~-~~~~y~~t~~s~~l~ 102 (348)
T 3lst_A 53 DGPRTPAELAAATGTD--------------ADALRRVLRLLAVRDVVRE-SDGRFALTDKGAALR 102 (348)
T ss_dssp TSCBCHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEE-ETTEEEECTTTGGGS
T ss_pred CCCCCHHHHHHHhCcC--------------HHHHHHHHHHHHhCCCEEe-cCCEEecCHHHHHHh
Confidence 4788999998876632 2579999999999999998 456789999987654
No 249
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=30.25 E-value=57 Score=25.66 Aligned_cols=52 Identities=13% Similarity=0.076 Sum_probs=42.5
Q ss_pred hCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeChhhhhhhhh
Q 032124 68 RGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVLVERLHKLDC 134 (147)
Q Consensus 68 ~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~LDr 134 (147)
.+|+.+..|...-|-. ...+|.+|..|..+|+++... ++..+|+.++..|+.
T Consensus 54 ~~~~t~~elA~~~~~~--------------~~~l~rlLr~L~~~gll~~~~-~~y~~t~~s~~~l~~ 105 (352)
T 3mcz_A 54 QTGRTPAEVAASFGMV--------------EGKAAILLHALAALGLLTKEG-DAFRNTALTERYLTT 105 (352)
T ss_dssp TSCBCHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEET-TEEEECHHHHHHHST
T ss_pred CCCCCHHHHHHHhCcC--------------hHHHHHHHHHHHHCCCeEecC-CeeecCHHHHhhccC
Confidence 4688899998877632 245999999999999999875 678999999988764
No 250
>3iz5_o 60S ribosomal protein L39 (L39E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_o 2zkr_3
Probab=29.63 E-value=59 Score=20.73 Aligned_cols=34 Identities=15% Similarity=0.398 Sum_probs=27.2
Q ss_pred HHHHHHHHHcCCCCCCCceeeeccCCCCCCCCCCCch
Q 032124 17 KAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDW 53 (147)
Q Consensus 17 ~~~A~~LK~~gki~~P~W~d~vKTg~~kElaP~~~DW 53 (147)
..||..+|++ =.+|.|+-. |||.-=...|---.|
T Consensus 11 ~rLaK~~kqN--r~iP~Wv~~-KT~~kir~n~kRRhW 44 (51)
T 3iz5_o 11 QKLAKKQRQN--RPIPYWIRM-RTDNTIRYNAKRRHW 44 (51)
T ss_dssp HHHHHHHHHS--SCCCGGGGT-SCSSCCCCCCCCCCS
T ss_pred HHHHHHHhcc--CCCCceEEE-eCCCccccCCccccc
Confidence 4689999998 689999976 999877777766555
No 251
>4a18_B RPL39, ribosomal protein L37; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_B 4a1b_B 4a1d_B
Probab=29.35 E-value=62 Score=20.70 Aligned_cols=34 Identities=24% Similarity=0.524 Sum_probs=27.2
Q ss_pred HHHHHHHHHcCCCCCCCceeeeccCCCCCCCCCCCch
Q 032124 17 KAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDW 53 (147)
Q Consensus 17 ~~~A~~LK~~gki~~P~W~d~vKTg~~kElaP~~~DW 53 (147)
..||..+|++ =.+|.|+-. |||.-=...|---.|
T Consensus 11 ~rLaK~~kqN--r~iP~Wv~~-KT~~kir~n~KRRhW 44 (52)
T 4a18_B 11 KRFGRKIKQN--RPLPNWYRY-KSDTNIRYNSKRRNW 44 (52)
T ss_dssp HHHHHHHHTT--SCCCTTGGG-CSSCCCSSCTTCCCT
T ss_pred HHHHHHHhcc--CCCCceEEE-eCCCccccCCccccc
Confidence 4689999988 689999976 999877777766566
No 252
>2ivy_A Hypothetical protein SSO1404; structural genomics, unknown function, CAS, RNAI, crispr; 1.4A {Sulfolobus solfataricus} SCOP: d.58.58.1 PDB: 2i8e_A
Probab=29.31 E-value=31 Score=24.03 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=20.2
Q ss_pred cccccChhHHHHHHHHHHHHcC
Q 032124 6 NVKDVSPHEFVKAYAAHLKRSG 27 (147)
Q Consensus 6 tVkDV~~~~fI~~~A~~LK~~g 27 (147)
-+|||+-+.-.+.+|++|++.|
T Consensus 7 V~YDI~~~kr~~kv~k~L~~yG 28 (101)
T 2ivy_A 7 IFYDITDDNLRNRVAEFLKKKG 28 (101)
T ss_dssp EEEEECCHHHHHHHHHHHHHTT
T ss_pred EEEeCCChHHHHHHHHHHHHhC
Confidence 4799998999999999999998
No 253
>2gbb_A Putative chorismate mutase; alpha helical bundle, isomerase; HET: CIT; 2.10A {Yersinia pestis biovar microtus str}
Probab=28.33 E-value=24 Score=26.58 Aligned_cols=37 Identities=16% Similarity=0.189 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCceeeeccCCCCCCCC
Q 032124 12 PHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAP 48 (147)
Q Consensus 12 ~~~fI~~~A~~LK~~gki~~P~W~d~vKTg~~kElaP 48 (147)
..+++.++|++||..|.+...++..|.++=....+.=
T Consensus 104 ~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ls~ 140 (156)
T 2gbb_A 104 STKILEQIAEELKTCKPAEMGDKAHFINTIRQHNLTS 140 (156)
T ss_dssp HHHHHHHHHHHHHHCCTTTSCCHHHHHHHCCCTTCCH
T ss_pred HHHHHHHHHHHHHhCCCCChhHHHHHHHHHccccCCH
Confidence 3578999999999999999999998888766655543
No 254
>1u3o_A Huntingtin-associated protein-interacting protein; SH3, CIS-proline,, signaling protein; NMR {Rattus norvegicus}
Probab=27.96 E-value=9.6 Score=26.43 Aligned_cols=10 Identities=30% Similarity=0.893 Sum_probs=8.0
Q ss_pred CCCchhHHhH
Q 032124 49 YDPDWYYIRA 58 (147)
Q Consensus 49 ~~~DW~YiRa 58 (147)
.+||||++|.
T Consensus 50 ~~peW~lvr~ 59 (82)
T 1u3o_A 50 ERPGWCLVRT 59 (82)
T ss_dssp SSTTEEEEEE
T ss_pred CCCCEEEEEE
Confidence 4789999874
No 255
>3u5e_l L46, YL40, 60S ribosomal protein L39; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_O 2ww9_O 3izc_o 3izs_o 2wwb_O 3o5h_e 3o58_e 3u5i_l 4b6a_l 3jyw_1
Probab=27.69 E-value=63 Score=20.59 Aligned_cols=34 Identities=21% Similarity=0.436 Sum_probs=27.1
Q ss_pred HHHHHHHHHcCCCCCCCceeeeccCCCCCCCCCCCch
Q 032124 17 KAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDW 53 (147)
Q Consensus 17 ~~~A~~LK~~gki~~P~W~d~vKTg~~kElaP~~~DW 53 (147)
..||..+|++ =.+|.|+-. |||.-=...|---.|
T Consensus 11 ~rLaK~~kqN--r~iP~Wv~~-KT~~kir~n~KRRhW 44 (51)
T 3u5e_l 11 QKMAKAKKQN--RPLPQWIRL-RTNNTIRYNAKRRNW 44 (51)
T ss_dssp HHHHHHHHTC--SCCCGGGGG-STTCCCCSCTTCCCT
T ss_pred HHHHHHHhcc--CCCCceEEE-eCCCccccCCccccc
Confidence 4689999988 689999976 999877777766555
No 256
>2d48_A Interleukin-4; four helix bundle, cytokine; 1.65A {Homo sapiens} PDB: 1itl_A 1itm_A 2b90_A 1cyl_A 1hik_A 1iar_A 1rcb_A 2b8u_A 2cyk_A 2int_A 3bpl_A* 3bpn_A* 2b8y_A 1hij_A 1hzi_A 2b8z_A 1bbn_A 1bcn_A 1iti_A 2b8x_A ...
Probab=27.56 E-value=30 Score=26.08 Aligned_cols=17 Identities=29% Similarity=0.487 Sum_probs=15.0
Q ss_pred hHHhHHHHHHHHHHhCC
Q 032124 54 YYIRAASMARKIYLRGG 70 (147)
Q Consensus 54 ~YiRaASi~RklYl~g~ 70 (147)
.+-|||-+||++|.+..
T Consensus 44 ~~CrAatvLrq~Y~~H~ 60 (129)
T 2d48_A 44 TFCRAATVLRQFYSHHE 60 (129)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 57999999999999854
No 257
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=27.24 E-value=94 Score=24.64 Aligned_cols=51 Identities=14% Similarity=0.116 Sum_probs=41.9
Q ss_pred CCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeChhhhhhhhh
Q 032124 69 GGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVLVERLHKLDC 134 (147)
Q Consensus 69 g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~LDr 134 (147)
+|..+..|...-|-. ...++.+|..|..+|+++..+ +.-.+|+.....|..
T Consensus 63 ~~~t~~eLA~~~g~~--------------~~~l~rlLr~L~~~gll~~~~-~~y~~t~~~~~~l~~ 113 (359)
T 1x19_A 63 GPKDLATLAADTGSV--------------PPRLEMLLETLRQMRVINLED-GKWSLTEFADYMFSP 113 (359)
T ss_dssp CCBCHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEET-TEEEECHHHHHHSSS
T ss_pred CCCCHHHHHHHhCcC--------------hHHHHHHHHHHHhCCCeEeeC-CeEecCHHHHHHhcC
Confidence 899999999887642 478999999999999999874 578899987766654
No 258
>3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica}
Probab=27.17 E-value=68 Score=25.85 Aligned_cols=29 Identities=17% Similarity=-0.049 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHcCCCCCCCceeeeccCCCCCCCCCC
Q 032124 15 FVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYD 50 (147)
Q Consensus 15 fI~~~A~~LK~~gki~~P~W~d~vKTg~~kElaP~~ 50 (147)
-|...++--.+.| +|||||+++.....-.
T Consensus 158 ei~~a~~ia~~aG-------ADfVKTSTGf~~ggAt 186 (239)
T 3ngj_A 158 EKVEVCKRCVAAG-------AEYVKTSTGFGTHGAT 186 (239)
T ss_dssp HHHHHHHHHHHHT-------CSEEECCCSSSSCCCC
T ss_pred HHHHHHHHHHHHC-------cCEEECCCCCCCCCCC
Confidence 3555555556655 8999999987644333
No 259
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=26.69 E-value=22 Score=26.84 Aligned_cols=57 Identities=11% Similarity=0.078 Sum_probs=35.5
Q ss_pred hHHhHHHHHHHHHHhCCCchhhHHHHhcCCCC--CCCCCCCCCCCchhHHHHHHHHhHhCC
Q 032124 54 YYIRAASMARKIYLRGGLGVGSFRRIYGGGKR--NGSRPPHFSKSSGSVARHILHQLQDTN 112 (147)
Q Consensus 54 ~YiRaASi~RklYl~g~vGV~~lr~~YGg~kr--rG~~P~h~~~asgsiiR~~LqqLE~~g 112 (147)
-++-...++|++| +..++..|.+.||-... ..++.-.-+.+...|.+++++.++++|
T Consensus 159 ~~iDt~~l~~~~~--~~~~L~~l~~~~gi~~~~~~~H~Al~Da~~ta~l~~~l~~~~~~~~ 217 (224)
T 2f96_A 159 SSFDTATLAGLAY--GQTVLAKACQAAGMEFDNREAHSARYDTEKTAELFCGIVNRWKEMG 217 (224)
T ss_dssp EEEEHHHHHHHHH--SCCSHHHHHHHTTCCCCTTSCCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ceeeHHHHHHHHc--CCCCHHHHHHHcCCCcCCCCCCChHHHHHHHHHHHHHHHHHHHHhC
Confidence 3455567788876 56789999999976421 112222223445567777787877764
No 260
>4asn_A TUBR; transcription, tubulin, FTSZ, segregation, partition; 3.50A {Bacillus megaterium}
Probab=26.13 E-value=94 Score=22.11 Aligned_cols=41 Identities=15% Similarity=0.098 Sum_probs=32.2
Q ss_pred CchhHHHHHHHHhHhCCceeeCCCCCe----eeChhhhhhhhhhhc
Q 032124 96 SSGSVARHILHQLQDTNIIELDSKGQS----LVLVERLHKLDCENS 137 (147)
Q Consensus 96 asgsiiR~~LqqLE~~glV~k~~~~GR----~lT~~G~~~LDri~~ 137 (147)
+|-.-.|+.|..||++-++.... ||| .||.-|+.-+-.-.-
T Consensus 46 ~~TA~~RKsL~rLEAi~FI~~V~-G~r~HK~~LT~YG~~A~~qaih 90 (101)
T 4asn_A 46 YSTANFRKTLNKLEAIHFIGTVT-GGKEHKLYLTEYGQQAVQQAIH 90 (101)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEC-SSSSCEEEECHHHHHHHHHHTT
T ss_pred HhHHHHHHHHHHHHHHHHhhhcc-cCccceeehHHhhHHHHHHHHh
Confidence 44578999999999999998764 555 699999988765433
No 261
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=25.25 E-value=33 Score=29.37 Aligned_cols=17 Identities=29% Similarity=0.384 Sum_probs=15.6
Q ss_pred chhHHhHHHHHHHHHHh
Q 032124 52 DWYYIRAASMARKIYLR 68 (147)
Q Consensus 52 DW~YiRaASi~RklYl~ 68 (147)
+=||-+||.|||.+.++
T Consensus 296 ~~yyd~~a~il~~~~~~ 312 (330)
T 3t7a_A 296 MKYYDDCAKILGNIVMR 312 (330)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 68999999999999886
No 262
>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405}
Probab=24.96 E-value=18 Score=24.10 Aligned_cols=24 Identities=13% Similarity=0.303 Sum_probs=19.9
Q ss_pred cccccChhHHHHHHHHHHHHcCCC
Q 032124 6 NVKDVSPHEFVKAYAAHLKRSGKI 29 (147)
Q Consensus 6 tVkDV~~~~fI~~~A~~LK~~gki 29 (147)
.++.+++++|+++|-+.+.++|.+
T Consensus 46 ~~hgiD~d~ll~eLn~~i~~~~~~ 69 (76)
T 2k53_A 46 AVHGIDADKLVKELNEYFEKKEVL 69 (76)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHhhcchH
Confidence 467789999999999999877644
No 263
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=24.92 E-value=1.1e+02 Score=24.59 Aligned_cols=57 Identities=14% Similarity=0.101 Sum_probs=42.5
Q ss_pred HHHHHHH-hCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeChhhhhhh
Q 032124 61 MARKIYL-RGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVLVERLHKL 132 (147)
Q Consensus 61 i~RklYl-~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~L 132 (147)
|...|-- .||+.+..|...-|- +...+|.+|..|..+|+++.+ .+.-.+|+.++-++
T Consensus 40 ifd~L~~~~~~~t~~eLA~~~g~--------------~~~~l~rlLr~l~~~g~l~~~-~~~y~~t~~s~~L~ 97 (363)
T 3dp7_A 40 IFQLLSGKREGYTLQEISGRTGL--------------TRYAAQVLLEASLTIGTILLE-EDRYVLAKAGWFLL 97 (363)
T ss_dssp HHHHHHTCTTCBCHHHHHHHHTC--------------CHHHHHHHHHHHHHHTSEEEE-TTEEEECHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHhCc--------------CHHHHHHHHHHHhhCCCeEec-CCEEecccchHHhh
Confidence 3344444 378999999887653 234599999999999999886 46779999986444
No 264
>3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A*
Probab=24.30 E-value=1.5e+02 Score=24.24 Aligned_cols=27 Identities=30% Similarity=0.063 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHcCCCCCCCceeeeccCCCCCCC
Q 032124 14 EFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELA 47 (147)
Q Consensus 14 ~fI~~~A~~LK~~gki~~P~W~d~vKTg~~kEla 47 (147)
+-|...++--.+.| +|||||+++..-.
T Consensus 173 eei~~A~~ia~eaG-------ADfVKTSTGf~~~ 199 (260)
T 3r12_A 173 EEKIAACVISKLAG-------AHFVKTSTGFGTG 199 (260)
T ss_dssp HHHHHHHHHHHHTT-------CSEEECCCSSSSC
T ss_pred HHHHHHHHHHHHhC-------cCEEEcCCCCCCC
Confidence 34555555555555 8999999987633
No 265
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=24.24 E-value=2.5e+02 Score=24.89 Aligned_cols=59 Identities=17% Similarity=0.111 Sum_probs=46.9
Q ss_pred HHHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHh-----CCceeeCCCCCeeeChhhhhhh
Q 032124 59 ASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQD-----TNIIELDSKGQSLVLVERLHKL 132 (147)
Q Consensus 59 ASi~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~-----~glV~k~~~~GR~lT~~G~~~L 132 (147)
..||..|.-++.+....|+...|- |-.-++.+|+.|.+ .|+|+... +.-.|+++=...+
T Consensus 433 ~~iL~~l~~~~~it~~~la~~l~~--------------s~~~~~~~L~~L~~~~~~~~glie~~g-~~y~L~~~~~~~~ 496 (583)
T 3lmm_A 433 AIVLYLLFQRPFITIDVVARGLQS--------------GKEAARNALEAARQTTVAGAPLIIAHD-GVWLLGNACREIL 496 (583)
T ss_dssp HHHHHHHHHSSSBCHHHHHHHHTS--------------CHHHHHHHHHHHHTCEETTEESEEEET-TEEEECHHHHHHH
T ss_pred HHHHHHHHHCCCcCHHHHHHHhCc--------------CHHHHHHHHHHHHhhhccccceEEEeC-CEEEECHHHHHHh
Confidence 468888888999999999999873 33678999999988 89999863 5577888755544
No 266
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=24.17 E-value=99 Score=24.88 Aligned_cols=57 Identities=12% Similarity=0.096 Sum_probs=42.4
Q ss_pred CCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCC---eeeChhhhhhhhhhhcCC
Q 032124 69 GGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQ---SLVLVERLHKLDCENSNG 139 (147)
Q Consensus 69 g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~G---R~lT~~G~~~LDri~~~~ 139 (147)
+|+.+..|...-|- +..-++.+|..|..+|+++....+| -.+|+.++..|..-....
T Consensus 42 ~p~t~~eLA~~~g~--------------~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t~~s~~~l~~~~~~~ 101 (353)
T 4a6d_A 42 GPLDVAAVAAGVRA--------------SAHGTELLLDICVSLKLLKVETRGGKAFYRNTELSSDYLTTVSPTS 101 (353)
T ss_dssp SCBCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHSTTSTTC
T ss_pred CCCCHHHHHHhhCc--------------CHHHHHHHHHHHHHCCCEEEeccCccceeeCCHHHHHHhhcCCchH
Confidence 57888888887653 3357899999999999998654443 578999988876654433
No 267
>1exe_A Transcription factor 1; beta ribbon ARMS, DNA-binding, DNA-bending protein; NMR {Bacillus phage SPO1} SCOP: a.55.1.1 PDB: 1wtu_A
Probab=23.51 E-value=1.3e+02 Score=20.38 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHcCCCCCCCceeee
Q 032124 13 HEFVKAYAAHLKRSGKIELPTWNDIV 38 (147)
Q Consensus 13 ~~fI~~~A~~LK~~gki~~P~W~d~v 38 (147)
+.|++.+.+.|++.++|++|.|-.|-
T Consensus 26 ~~~~~~i~~~L~~G~~V~l~gfG~F~ 51 (99)
T 1exe_A 26 ASFEKIITETVAKGDKVQLTGFLNIK 51 (99)
T ss_dssp HHHHHHHHHHHHHTCCCCBTTTBCCC
T ss_pred HHHHHHHHHHHHCCCeEEECCceEEE
Confidence 57888889999999999999998883
No 268
>1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A*
Probab=22.90 E-value=1.2e+02 Score=23.63 Aligned_cols=48 Identities=21% Similarity=0.157 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHcCCCCCCCceeeeccCCCCCCCCCCCchhHHhHHHHHHHHHHhCCCch
Q 032124 13 HEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGV 73 (147)
Q Consensus 13 ~~fI~~~A~~LK~~gki~~P~W~d~vKTg~~kElaP~~~DW~YiRaASi~RklYl~g~vGV 73 (147)
++.|...++--.+.| +|||||+++..-..-.+ ....++|++- ..++||
T Consensus 132 ~e~i~~a~~ia~eaG-------ADfVKTsTGf~~~gat~-----~dv~~m~~~v-g~~v~V 179 (220)
T 1ub3_A 132 PEEIARLAEAAIRGG-------ADFLKTSTGFGPRGASL-----EDVALLVRVA-QGRAQV 179 (220)
T ss_dssp HHHHHHHHHHHHHHT-------CSEEECCCSSSSCCCCH-----HHHHHHHHHH-TTSSEE
T ss_pred HHHHHHHHHHHHHhC-------CCEEEeCCCCCCCCCCH-----HHHHHHHHhh-CCCCeE
Confidence 344555556666655 89999998776333232 2334555543 445554
No 269
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=22.61 E-value=68 Score=24.21 Aligned_cols=41 Identities=10% Similarity=0.242 Sum_probs=28.4
Q ss_pred cccccChhHHHHHHHHHHHHcCCCCCCCcee----eeccCCCCCCC
Q 032124 6 NVKDVSPHEFVKAYAAHLKRSGKIELPTWND----IVKTGTLKELA 47 (147)
Q Consensus 6 tVkDV~~~~fI~~~A~~LK~~gki~~P~W~d----~vKTg~~kEla 47 (147)
.|.|...++ |+.+.+.+.+..+.++|+|.- -++||....+-
T Consensus 57 r~g~Lt~~e-i~~l~~~i~~~~~~~iP~w~lNR~kD~~~G~~~~li 101 (146)
T 3u5c_S 57 RAGELTQEE-LERIVQIMQNPTHYKIPAWFLNRQNDITDGKDYHTL 101 (146)
T ss_dssp CSSSCCHHH-HHHHHHHHTCTTTTTCCSTTCTBCSCSSSCCCBCCC
T ss_pred eeccCCHHH-HHHHHHHHHhhcccCccHHHhhhhhcccccchheee
Confidence 778886666 677888887656789999952 23566655443
No 270
>3tvt_B PINS, partner of inscuteable; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster}
Probab=21.72 E-value=18 Score=22.89 Aligned_cols=30 Identities=13% Similarity=0.315 Sum_probs=21.5
Q ss_pred CCCchhHHHHHHHHhHhCCceeeCCCCCeee
Q 032124 94 SKSSGSVARHILHQLQDTNIIELDSKGQSLV 124 (147)
Q Consensus 94 ~~asgsiiR~~LqqLE~~glV~k~~~~GR~l 124 (147)
..+-|..+|---|++|.+.||.-.++ |.+|
T Consensus 13 ensqgrmvrvrrqsmeqldlikitpd-gkrl 42 (50)
T 3tvt_B 13 ENSQGRMVRVRRQDMEQLDLIKITPD-GKRM 42 (50)
T ss_pred ccccceEEEeeecchhhcCeEEecCC-chhh
Confidence 34446678888899999999976664 4444
No 271
>3exc_X Uncharacterized protein; ferredoxin fold, double split beta-alpha-beta fold, dimer, C aspartate, RNA'ASE, hydrolase; 2.25A {Sulfolobus solfataricus} SCOP: d.58.58.0
Probab=21.69 E-value=59 Score=22.25 Aligned_cols=22 Identities=36% Similarity=0.336 Sum_probs=19.6
Q ss_pred cccccChhHHHHHHHHHHHHcC
Q 032124 6 NVKDVSPHEFVKAYAAHLKRSG 27 (147)
Q Consensus 6 tVkDV~~~~fI~~~A~~LK~~g 27 (147)
=+|||+.+.=...+|+.|++-|
T Consensus 8 V~YDI~~~krr~kv~k~l~~yG 29 (91)
T 3exc_X 8 VVYDVSDDSKRNKLANNLKKLG 29 (91)
T ss_dssp EEEECCSHHHHHHHHHHHHHTT
T ss_pred EEEeCCCchHHHHHHHHHHHhC
Confidence 5799998888899999999988
No 272
>3h87_C Putative uncharacterized protein; toxin antitoxin complex, vapbc complex, RHH motif, structura genomics; 1.49A {Mycobacterium tuberculosis}
Probab=20.82 E-value=74 Score=21.48 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=16.0
Q ss_pred CCCCccccccChhHHHHHHHHHHHHcC
Q 032124 1 METAKNVKDVSPHEFVKAYAAHLKRSG 27 (147)
Q Consensus 1 m~~~~tVkDV~~~~fI~~~A~~LK~~g 27 (147)
|+.+ +|.||| ++.+.+|-+.=+..|
T Consensus 1 M~~i-~IRnvp-dev~~~L~~rAa~~G 25 (73)
T 3h87_C 1 MSDV-LIRDIP-DDVLASLDAIAARLG 25 (73)
T ss_dssp -CCC-CCCCCC-HHHHHHHHHHHHHHT
T ss_pred CCce-eecCCC-HHHHHHHHHHHHHcC
Confidence 7755 999995 556666665555554
No 273
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=20.80 E-value=69 Score=23.09 Aligned_cols=22 Identities=23% Similarity=0.205 Sum_probs=18.3
Q ss_pred CchhHHHHHHHHhHhCCceeeC
Q 032124 96 SSGSVARHILHQLQDTNIIELD 117 (147)
Q Consensus 96 asgsiiR~~LqqLE~~glV~k~ 117 (147)
.|..-+-.+|++|++.|+|+..
T Consensus 175 ~sr~tvsR~l~~L~~~g~I~~~ 196 (222)
T 1ft9_A 175 SSRQTTSTALNSLIKEGYISRQ 196 (222)
T ss_dssp SCHHHHHHHHHHHHHTTSSEEC
T ss_pred CcHHHHHHHHHHHHHCCcEEEc
Confidence 3556777899999999999886
No 274
>1mul_A NS2, HU-2, DNA binding protein HU-alpha; histone-like; HET: DNA; 2.30A {Escherichia coli} SCOP: a.55.1.1 PDB: 2o97_A
Probab=20.42 E-value=52 Score=21.76 Aligned_cols=27 Identities=15% Similarity=0.213 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHcCCCCCCCceeeec
Q 032124 13 HEFVKAYAAHLKRSGKIELPTWNDIVK 39 (147)
Q Consensus 13 ~~fI~~~A~~LK~~gki~~P~W~d~vK 39 (147)
+.|++.+.+.|++.++|++|.|-.|--
T Consensus 26 ~~~~~~i~~~L~~g~~V~l~gfG~F~v 52 (90)
T 1mul_A 26 ESTLAAITESLKEGDAVQLVGFGTFKV 52 (90)
T ss_dssp HHHHHHHHHHHHTTCCEEETTTEEEEE
T ss_pred HHHHHHHHHHHhCCCeEEEcCCeEEEE
Confidence 578888999999999999999988843
No 275
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=20.38 E-value=44 Score=26.86 Aligned_cols=32 Identities=9% Similarity=-0.033 Sum_probs=25.0
Q ss_pred chhHHHHHHHHhHhCCceeeCCCCCeeeChhhhhhh
Q 032124 97 SGSVARHILHQLQDTNIIELDSKGQSLVLVERLHKL 132 (147)
Q Consensus 97 sgsiiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~L 132 (147)
+-.-+..+++.|..+|-++.+ | .||+-|+...
T Consensus 16 ~~~~l~~A~~~L~~LgAld~~---g-~lT~lG~~ma 47 (270)
T 3i4u_A 16 PMETLITAMEQLYTLGALDDE---G-LLTRLGRRMA 47 (270)
T ss_dssp HHHHHHHHHHHHHHHTSBCTT---S-CBCHHHHHHT
T ss_pred CHHHHHHHHHHHHHcCCcCCC---C-CccHHHHHHH
Confidence 345678999999999999643 3 6999998753
Done!