Query 032124
Match_columns 147
No_of_seqs 107 out of 328
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 15:59:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032124.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032124hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2v7fa1 a.4.5.84 (A:2-150) Rib 100.0 1.4E-73 1E-77 443.2 9.2 133 6-138 2-134 (149)
2 d1stza1 a.4.5.51 (A:14-100) He 97.6 7.3E-05 5.3E-09 51.2 6.6 63 63-137 14-80 (87)
3 d1s3ja_ a.4.5.28 (A:) Putative 96.8 0.0012 8.6E-08 46.0 6.0 62 61-136 40-107 (143)
4 d1ub9a_ a.4.5.28 (A:) Hypothet 96.8 0.00079 5.8E-08 44.8 4.6 63 59-135 19-87 (100)
5 d2p8ta1 a.4.5.72 (A:14-82) Hyp 96.7 0.0023 1.7E-07 42.3 6.7 62 61-137 7-69 (69)
6 d1jgsa_ a.4.5.28 (A:) Multiple 96.7 0.0024 1.7E-07 44.5 7.1 63 61-137 39-107 (138)
7 d2a61a1 a.4.5.28 (A:5-143) Tra 96.7 0.0016 1.2E-07 45.2 6.1 63 61-137 35-103 (139)
8 d1lnwa_ a.4.5.28 (A:) MexR rep 96.6 0.0022 1.6E-07 44.8 6.2 62 61-136 41-108 (141)
9 d2fbia1 a.4.5.28 (A:5-140) Pro 96.4 0.0027 1.9E-07 43.9 5.5 64 60-137 34-103 (136)
10 d1mkma1 a.4.5.33 (A:1-75) Tran 96.4 0.0058 4.2E-07 39.4 6.7 60 56-129 5-65 (75)
11 d1z91a1 a.4.5.28 (A:8-144) Org 96.3 0.0026 1.9E-07 44.1 5.1 63 61-137 38-106 (137)
12 d2etha1 a.4.5.28 (A:1-140) Put 96.2 0.0066 4.8E-07 41.9 6.8 63 61-137 37-105 (140)
13 d2bv6a1 a.4.5.28 (A:5-140) Tra 96.1 0.0056 4.1E-07 42.2 5.8 63 61-137 39-107 (136)
14 d1lj9a_ a.4.5.28 (A:) Transcri 95.9 0.0092 6.7E-07 41.7 6.2 63 61-137 34-102 (144)
15 d1r7ja_ a.4.5.49 (A:) Sso10a ( 95.8 0.0042 3.1E-07 42.3 3.9 41 94-135 28-68 (90)
16 d2fbha1 a.4.5.28 (A:8-144) Tra 95.7 0.011 8.2E-07 40.4 6.1 63 61-137 33-102 (137)
17 d2hr3a1 a.4.5.28 (A:2-146) Pro 95.5 0.017 1.2E-06 40.0 6.3 62 61-136 39-107 (145)
18 d3ctaa1 a.4.5.28 (A:5-89) Ta10 95.4 0.015 1.1E-06 38.3 5.4 54 69-136 20-76 (85)
19 d2frha1 a.4.5.28 (A:102-216) P 95.3 0.011 7.9E-07 40.3 4.8 62 61-136 38-107 (115)
20 d1in4a1 a.4.5.11 (A:255-329) H 95.2 0.018 1.3E-06 38.4 5.4 58 62-133 14-71 (75)
21 d3broa1 a.4.5.28 (A:3-137) Tra 95.0 0.029 2.1E-06 38.1 6.2 63 61-137 34-104 (135)
22 d3deua1 a.4.5.28 (A:2-141) Tra 94.7 0.036 2.6E-06 37.8 6.1 63 61-137 36-105 (140)
23 d1xd7a_ a.4.5.55 (A:) Hypothet 94.7 0.041 3E-06 37.8 6.4 56 58-128 6-63 (127)
24 d1hsja1 a.4.5.28 (A:373-487) S 94.5 0.016 1.1E-06 39.6 3.9 63 61-137 37-107 (115)
25 d2d1ha1 a.4.5.50 (A:1-109) Hyp 94.5 0.022 1.6E-06 38.1 4.3 65 59-137 24-95 (109)
26 d2fxaa1 a.4.5.28 (A:6-167) Pro 94.4 0.029 2.1E-06 40.5 5.3 63 61-137 46-114 (162)
27 d1z7ua1 a.4.5.69 (A:1-108) Hyp 94.3 0.029 2.1E-06 38.7 4.9 62 60-135 23-90 (108)
28 d1xmaa_ a.4.5.61 (A:) Predicte 94.2 0.023 1.7E-06 38.4 4.2 45 92-136 36-88 (103)
29 d1ixsb1 a.4.5.11 (B:243-318) H 94.2 0.023 1.6E-06 38.0 3.9 54 66-133 18-71 (76)
30 d2hzta1 a.4.5.69 (A:4-98) Puta 94.1 0.055 4E-06 36.3 5.9 63 59-135 14-82 (95)
31 d2hs5a1 a.4.5.6 (A:25-93) Puta 94.1 0.057 4.2E-06 33.9 5.5 40 72-125 27-66 (69)
32 d1v4ra1 a.4.5.6 (A:1-100) Tran 94.0 0.037 2.7E-06 37.2 4.8 78 47-140 5-94 (100)
33 d3bwga1 a.4.5.6 (A:5-82) Trans 93.5 0.017 1.2E-06 37.1 2.2 44 72-129 24-67 (78)
34 d2fbka1 a.4.5.28 (A:8-179) Tra 93.4 0.038 2.8E-06 39.7 4.3 62 61-136 67-137 (172)
35 d1yyva1 a.4.5.69 (A:9-122) Put 93.4 0.053 3.8E-06 37.6 4.9 63 59-135 27-95 (114)
36 d1p4xa1 a.4.5.28 (A:1-125) Sta 93.3 0.05 3.6E-06 37.4 4.6 63 60-136 38-108 (125)
37 d1yg2a_ a.4.5.61 (A:) Hypothet 93.3 0.041 3E-06 39.6 4.2 71 61-138 6-84 (178)
38 d1jhfa1 a.4.5.2 (A:2-72) LexA 93.1 0.078 5.7E-06 33.8 4.9 42 70-124 24-65 (71)
39 d2fswa1 a.4.5.69 (A:3-104) Hyp 92.8 0.083 6E-06 35.9 5.1 63 59-135 23-91 (102)
40 d1sfxa_ a.4.5.50 (A:) Hypothet 92.7 0.11 7.7E-06 34.8 5.4 50 59-122 23-74 (109)
41 d1p4xa2 a.4.5.28 (A:126-250) S 91.7 0.1 7.5E-06 36.0 4.5 62 61-136 38-107 (125)
42 d2f2ea1 a.4.5.69 (A:5-146) Hyp 91.5 0.21 1.6E-05 35.7 6.2 62 59-135 23-89 (142)
43 d1z05a1 a.4.5.63 (A:10-80) Tra 90.6 0.29 2.1E-05 30.3 5.5 47 57-117 7-53 (71)
44 d2axla1 a.4.5.43 (A:1-144) Wer 90.2 0.18 1.3E-05 35.8 4.7 78 58-135 15-106 (144)
45 d2esha1 a.4.5.61 (A:4-117) Hyp 89.2 0.13 9.2E-06 35.2 3.1 44 93-136 41-91 (114)
46 d1biaa1 a.4.5.1 (A:1-63) Bioti 89.2 0.38 2.8E-05 29.6 5.1 52 60-125 9-61 (63)
47 d1hw1a1 a.4.5.6 (A:5-78) Fatty 88.5 0.14 1E-05 32.7 2.7 40 72-125 29-68 (74)
48 d1ylfa1 a.4.5.55 (A:5-142) Hyp 86.4 1.3 9.4E-05 30.1 7.1 63 58-134 9-76 (138)
49 d2obpa1 a.4.5.71 (A:12-92) Put 85.3 0.43 3.1E-05 31.9 3.8 36 98-133 38-77 (81)
50 d1tw3a1 a.4.5.29 (A:14-98) Car 84.9 0.97 7.1E-05 29.0 5.4 52 67-132 31-82 (85)
51 d1ulya_ a.4.5.58 (A:) Hypothet 82.3 0.77 5.6E-05 32.6 4.4 42 61-117 24-65 (190)
52 d1j5ya1 a.4.5.1 (A:3-67) Putat 82.0 1.4 9.8E-05 26.8 5.0 55 57-126 8-64 (65)
53 d1olta_ c.1.28.2 (A:) Oxygen-i 82.0 0.48 3.5E-05 38.7 3.6 65 62-137 371-435 (441)
54 d1ku9a_ a.4.5.36 (A:) DNA-bind 81.8 1.3 9.2E-05 29.7 5.3 78 12-129 8-92 (151)
55 d1qzza1 a.4.5.29 (A:10-101) Ac 81.3 1.9 0.00014 28.2 5.9 52 68-133 38-91 (92)
56 d1z6ra1 a.4.5.63 (A:12-81) Mlc 80.4 1.4 0.0001 27.2 4.7 47 57-117 6-52 (70)
57 d2fnaa1 a.4.5.11 (A:284-356) H 80.2 0.89 6.4E-05 29.6 3.7 29 97-126 37-65 (73)
58 d2p4wa1 a.4.5.64 (A:1-194) Tra 78.5 0.9 6.6E-05 32.7 3.7 58 60-132 19-84 (194)
59 d2hoea1 a.4.5.63 (A:10-71) N-a 76.7 0.7 5.1E-05 28.3 2.3 44 59-117 2-45 (62)
60 d1u2wa1 a.4.5.5 (A:12-119) Cad 71.4 3.2 0.00024 27.5 4.9 48 60-122 35-82 (108)
61 d2ev0a1 a.4.5.24 (A:2-62) Mang 71.0 6.6 0.00048 23.7 6.0 41 68-122 19-59 (61)
62 d1okra_ a.4.5.39 (A:) Methicil 68.0 1.7 0.00012 28.8 2.8 50 60-119 11-60 (120)
63 d1p1xa_ c.1.10.1 (A:) Deoxyrib 67.8 5.2 0.00038 30.6 6.0 85 13-109 148-249 (250)
64 d1r1ta_ a.4.5.5 (A:) SmtB repr 66.0 4.4 0.00032 26.3 4.6 51 56-123 24-74 (98)
65 d2esna1 a.4.5.37 (A:3-91) Prob 64.9 2.7 0.0002 26.7 3.3 36 99-135 35-73 (89)
66 d1p6ra_ a.4.5.39 (A:) Penicill 60.2 4.3 0.00031 25.8 3.6 52 60-122 13-64 (82)
67 d2gaua1 a.4.5.4 (A:152-232) Tr 58.8 2.8 0.0002 25.7 2.3 44 93-139 38-81 (81)
68 d2g9wa1 a.4.5.39 (A:3-124) Hyp 58.2 8.3 0.00061 25.6 5.0 53 59-122 10-63 (122)
69 d2nyga1 c.140.1.2 (A:2-271) Un 55.4 1.4 0.0001 34.1 0.5 95 12-107 48-147 (270)
70 d1oywa1 a.4.5.43 (A:407-516) D 53.5 5.9 0.00043 26.1 3.5 75 61-135 13-99 (110)
71 d1r1ua_ a.4.5.5 (A:) Metal-sen 53.2 11 0.00082 24.1 4.8 50 56-122 19-68 (94)
72 d2v0fa1 d.76.2.1 (A:2629-2715) 50.1 0.68 5E-05 31.2 -1.9 26 16-41 38-64 (87)
73 d1sd4a_ a.4.5.39 (A:) Penicill 47.9 13 0.00092 24.7 4.6 52 60-122 10-61 (122)
74 d1ixca1 a.4.5.37 (A:1-89) LysR 47.8 5.6 0.00041 25.2 2.5 36 99-135 30-68 (89)
75 d1i5za1 a.4.5.4 (A:138-206) Ca 46.6 7 0.00051 23.3 2.7 24 94-117 39-62 (69)
76 d1b9ma1 a.4.5.8 (A:-1-126) N-t 43.6 9.3 0.00068 25.0 3.2 36 99-134 47-89 (127)
77 d2p6ra1 a.4.5.43 (A:404-488) H 42.4 13 0.00098 23.1 3.7 31 98-130 49-79 (85)
78 d1zara1 a.4.5.56 (A:2-90) Rio2 41.9 11 0.00082 24.8 3.4 37 96-132 41-79 (89)
79 d2b0la1 a.4.5.66 (A:167-257) G 40.8 8 0.00058 25.8 2.4 21 98-118 48-68 (91)
80 d1lvaa4 a.4.5.35 (A:575-634) C 40.3 35 0.0025 20.6 5.7 53 57-124 5-57 (60)
81 d2dk5a1 a.4.5.85 (A:8-85) DNA- 39.9 8.3 0.0006 24.9 2.4 21 98-118 43-63 (78)
82 d2isya1 a.4.5.24 (A:2-64) Iron 38.7 36 0.0026 20.3 6.5 40 68-121 21-60 (63)
83 d1bjaa_ a.4.5.9 (A:) Transcrip 38.5 49 0.0036 21.8 6.8 64 57-134 17-80 (95)
84 d2cyya1 a.4.5.32 (A:5-64) Puta 38.2 20 0.0015 20.7 3.9 43 60-116 7-49 (60)
85 d2b8ua1 a.26.1.2 (A:1-129) Int 35.9 4 0.00029 29.0 0.3 54 9-71 4-61 (129)
86 d2cg4a1 a.4.5.32 (A:4-66) Regu 33.6 32 0.0023 20.0 4.3 43 60-116 9-51 (63)
87 d1i39a_ c.55.3.1 (A:) Class II 32.5 24 0.0018 24.6 4.2 54 51-114 130-183 (200)
88 d1i1ga1 a.4.5.32 (A:2-61) LprA 31.8 28 0.002 20.3 3.8 43 60-116 7-49 (60)
89 d1mzha_ c.1.10.1 (A:) Deoxyrib 30.4 14 0.001 27.7 2.6 29 16-51 134-162 (225)
90 d1nd9a_ a.6.1.6 (A:) N-termina 28.8 14 0.001 21.8 1.9 28 101-131 16-43 (49)
91 d1q1ha_ a.4.5.41 (A:) Transcri 28.5 13 0.00096 24.5 1.9 42 60-115 22-64 (88)
92 d2a4aa1 c.1.10.1 (A:3-258) Fru 27.3 25 0.0018 26.6 3.6 17 35-51 165-181 (256)
93 d1uaxa_ c.55.3.1 (A:) Class II 25.8 62 0.0045 22.7 5.5 26 53-80 138-163 (211)
94 d2cfxa1 a.4.5.32 (A:1-63) Tran 25.2 61 0.0044 18.8 4.9 43 60-116 9-51 (63)
95 d1n7ka_ c.1.10.1 (A:) Deoxyrib 24.7 46 0.0033 24.6 4.7 29 16-51 150-178 (234)
96 d1o57a1 a.4.5.40 (A:2-74) N-te 24.7 37 0.0027 21.6 3.6 58 57-126 7-72 (73)
97 d1awda_ d.15.4.1 (A:) 2Fe-2S f 24.6 9.6 0.0007 24.4 0.6 27 119-145 9-36 (94)
98 d1m8pa3 c.37.1.15 (A:391-573) 24.5 16 0.0011 23.2 1.7 19 98-116 164-182 (183)
99 d1frda_ d.15.4.1 (A:) 2Fe-2S f 23.9 11 0.00082 24.0 0.8 24 122-145 16-40 (98)
100 d1iuea_ d.15.4.1 (A:) 2Fe-2S f 22.3 11 0.00077 24.3 0.5 26 120-145 12-38 (98)
101 d2ve8a1 a.4.5.67 (A:745-811) D 21.5 25 0.0018 21.8 2.1 50 52-118 3-52 (67)
102 d1exea_ a.55.1.1 (A:) Transcri 21.5 68 0.0049 20.2 4.5 25 13-37 26-50 (99)
103 d1qu6a1 d.50.1.1 (A:1-90) dsRN 21.2 33 0.0024 21.4 2.8 33 7-41 7-39 (90)
104 d1zyba1 a.4.5.4 (A:148-220) Pr 20.4 31 0.0023 20.7 2.5 19 99-117 42-60 (73)
105 d1dcpa_ d.74.1.1 (A:) Pterin-4 20.3 28 0.002 22.4 2.3 37 99-137 6-50 (99)
No 1
>d2v7fa1 a.4.5.84 (A:2-150) Ribosomal protein S19e {Pyrococcus abyssi [TaxId: 29292]}
Probab=100.00 E-value=1.4e-73 Score=443.20 Aligned_cols=133 Identities=35% Similarity=0.574 Sum_probs=121.3
Q ss_pred cccccChhHHHHHHHHHHHHcCCCCCCCceeeeccCCCCCCCCCCCchhHHhHHHHHHHHHHhCCCchhhHHHHhcCCCC
Q 032124 6 NVKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKR 85 (147)
Q Consensus 6 tVkDV~~~~fI~~~A~~LK~~gki~~P~W~d~vKTg~~kElaP~~~DW~YiRaASi~RklYl~g~vGV~~lr~~YGg~kr 85 (147)
||||||||+||++||+|||++|+|++|+|+||||||++||+||+||||||+||||||||||++||+||++||++|||+||
T Consensus 2 Tv~DVpa~~~I~~lA~~LK~~~ki~~P~W~~~vKTg~~kE~~P~~~DW~y~RaASilRkiY~~gpvGv~~Lr~~YGg~k~ 81 (149)
T d2v7fa1 2 TVYDVPGDLLVERVAQRLKEIPEIKPPEWAPFVKTGRHKERLPEQEDWWYYRVASILRRVYLDGPVGIERLRTYYGGRKN 81 (149)
T ss_dssp CGGGSCHHHHHHHHHHHHTTCTTCCCCSCGGGCCC------CHHHHTHHHHHHHHHHHHHHHHCSBCHHHHHHHHCC---
T ss_pred CccccCHHHHHHHHHHHHHhcCCCCCCcchhhhcccccccCCCCCCchHHHHHHHHHHHHHHcCCccHHHHHHHHCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeChhhhhhhhhhhcC
Q 032124 86 NGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVLVERLHKLDCENSN 138 (147)
Q Consensus 86 rG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~LDri~~~ 138 (147)
||++|+||++|||+|||+||||||++|||++++++||+||++||++||+||..
T Consensus 82 rG~~P~h~~~~Sg~iiR~~LQqLE~~glVek~~~~GR~lT~~G~~~LD~iA~~ 134 (149)
T d2v7fa1 82 RGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPGKGRVITPKGRSFLDKIATE 134 (149)
T ss_dssp -CCCTTSCCCHHHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHHHHHH
T ss_pred CCCCCCCcCCCccHHHHHHHHHHHhCCCeeEcCCCCcEECHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999989999999999999999863
No 2
>d1stza1 a.4.5.51 (A:14-100) Heat-inducible transcription repressor HrcA, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=97.61 E-value=7.3e-05 Score=51.18 Aligned_cols=63 Identities=10% Similarity=0.023 Sum_probs=49.2
Q ss_pred HHHHHh--CCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC-CCCeeeChhhhh-hhhhhhc
Q 032124 63 RKIYLR--GGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS-KGQSLVLVERLH-KLDCENS 137 (147)
Q Consensus 63 RklYl~--g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~-~~GR~lT~~G~~-~LDri~~ 137 (147)
...|+. -|+|...+...||- +-|.+-||..|++||+.|+|++.. .+||..|.+|-+ .+|...+
T Consensus 14 ve~y~~~g~Pv~s~~i~~~~~l------------~~S~aTIRn~m~~LE~~G~l~~~h~s~GriPT~~g~r~yv~~ll~ 80 (87)
T d1stza1 14 VREYIENKKPVSSQRVLEVSNI------------EFSSATIRNDMKKLEYLGYIYQPHTSAGRIPTDKGLRFYYEEMLK 80 (87)
T ss_dssp HHHHHHHCSCBCHHHHHHHSCC------------CSCHHHHHHHHHHHHHTTSEECCSSCSCBEECHHHHHHHHHHHHH
T ss_pred HHHHHHcCCccCHHHHHHHhCC------------CCCHHHHHHHHHHHHHCCcccCCCCCCCCcccHHHHHHHHHHHcc
Confidence 345664 59999999998763 347799999999999999999754 479999999964 3444443
No 3
>d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]}
Probab=96.81 E-value=0.0012 Score=46.02 Aligned_cols=62 Identities=16% Similarity=0.106 Sum_probs=51.3
Q ss_pred HHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC--CCCe----eeChhhhhhhhh
Q 032124 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGQS----LVLVERLHKLDC 134 (147)
Q Consensus 61 i~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~~~LDr 134 (147)
||..|+-.||+.++.|++..+-. .+-+-.+++.||+.|||++.+ ..+| .||++|+..++.
T Consensus 40 iL~~l~~~~~~t~~~la~~~~i~--------------~~~vs~~l~~L~~~glv~r~~~~~D~R~~~v~lT~~G~~~~~~ 105 (143)
T d1s3ja_ 40 VLASLKKHGSLKVSEIAERMEVK--------------PSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFEE 105 (143)
T ss_dssp HHHHHHHHSEEEHHHHHHHHTSC--------------HHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHCcC--------------HHHHHHHHHHHHHhhhheeeeecCCCCceEEEECHHHHHHHHH
Confidence 78889999999999999987753 477888999999999998544 4465 699999998886
Q ss_pred hh
Q 032124 135 EN 136 (147)
Q Consensus 135 i~ 136 (147)
+.
T Consensus 106 ~~ 107 (143)
T d1s3ja_ 106 VL 107 (143)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 4
>d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=96.77 E-value=0.00079 Score=44.79 Aligned_cols=63 Identities=3% Similarity=-0.040 Sum_probs=49.5
Q ss_pred HHHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCC--CC----eeeChhhhhhh
Q 032124 59 ASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK--GQ----SLVLVERLHKL 132 (147)
Q Consensus 59 ASi~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~--~G----R~lT~~G~~~L 132 (147)
.+||..|+-+|++.++.|+...|-.+ +-+-..|..||+.|||+.... ++ -.||++|+..+
T Consensus 19 ~~IL~~L~~~~~~~~~eLa~~l~is~--------------~~vs~~l~~L~~~glV~~~~~~~d~r~~~~~LT~~G~~~~ 84 (100)
T d1ub9a_ 19 LGIMIFLLPRRKAPFSQIQKVLDLTP--------------GNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEA 84 (100)
T ss_dssp HHHHHHHHHHSEEEHHHHHHHTTCCH--------------HHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHH
T ss_pred HHHHHHhccCCCeeHHHHHHHHhhcc--------------ccccHHHHHHhhhceeEEEEcCcCCccccccCCHHHHHHH
Confidence 35899999999999999999876433 566777999999999986542 33 35999999877
Q ss_pred hhh
Q 032124 133 DCE 135 (147)
Q Consensus 133 Dri 135 (147)
...
T Consensus 85 ~~~ 87 (100)
T d1ub9a_ 85 KRF 87 (100)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 5
>d2p8ta1 a.4.5.72 (A:14-82) Hypothetical protein PH0730 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=96.74 E-value=0.0023 Score=42.28 Aligned_cols=62 Identities=18% Similarity=0.176 Sum_probs=51.6
Q ss_pred HHHHHHH-hCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeChhhhhhhhhhhc
Q 032124 61 MARKIYL-RGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVLVERLHKLDCENS 137 (147)
Q Consensus 61 i~RklYl-~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~LDri~~ 137 (147)
+++-+++ +.|+|=..|+..-|- +-.++|.-+.-|-++|+|+..+ .|-.||++|++.|+.+.+
T Consensus 7 vl~~l~ll~qPiGRr~La~~L~l--------------~Er~vRte~~~Lk~~gLI~~~~-~Gm~lTe~G~~~l~~L~s 69 (69)
T d2p8ta1 7 VLAVIFLLKEPLGRKQISERLEL--------------GEGSVRTLLRKLSHLDIIRSKQ-RGHFLTLKGKEIRDKLLS 69 (69)
T ss_dssp HHHHHHHTTSCBCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEC---CEEECHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCccHHHHHHHcCC--------------cHHHHHHHHHHHHHCCCeeeeC-CCCEECHhHHHHHHHHhC
Confidence 5666665 799999999998664 4579999999999999999885 799999999999987653
No 6
>d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]}
Probab=96.72 E-value=0.0024 Score=44.47 Aligned_cols=63 Identities=6% Similarity=-0.019 Sum_probs=51.8
Q ss_pred HHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeC--CCCCe----eeChhhhhhhhh
Q 032124 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELD--SKGQS----LVLVERLHKLDC 134 (147)
Q Consensus 61 i~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~--~~~GR----~lT~~G~~~LDr 134 (147)
+|..|+-.|++.+..|+..-+-. .+-+-.+++.||+.|||++. ++.+| .||++|+..+++
T Consensus 39 vL~~l~~~~~~t~~ela~~~~i~--------------~~~vs~~v~~L~~~glv~r~~~~~D~R~~~i~lT~~G~~~~~~ 104 (138)
T d1jgsa_ 39 VLCSIRCAACITPVELKKVLSVD--------------LGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICEQ 104 (138)
T ss_dssp HHHHHHHHSSBCHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHHHH
T ss_pred HHHhHHhCcCCCHHHHHHHHCCC--------------HhHHHHHHHHHhhCCCEEEeeccCCCCeeEEEECHHHHHHHHH
Confidence 67888999999999999987653 37788899999999999854 44566 689999999887
Q ss_pred hhc
Q 032124 135 ENS 137 (147)
Q Consensus 135 i~~ 137 (147)
+..
T Consensus 105 ~~~ 107 (138)
T d1jgsa_ 105 CHQ 107 (138)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 7
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}
Probab=96.70 E-value=0.0016 Score=45.15 Aligned_cols=63 Identities=14% Similarity=0.250 Sum_probs=51.8
Q ss_pred HHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC--CCCe----eeChhhhhhhhh
Q 032124 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGQS----LVLVERLHKLDC 134 (147)
Q Consensus 61 i~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~~~LDr 134 (147)
+|..|+-.||+.+..|+..-|-.+ +-+-.+++.||+.|||++.+ +.+| .||++|+..++.
T Consensus 35 iL~~i~~~~~~t~~~la~~l~i~~--------------~tvs~~l~~L~~~gli~r~~~~~D~R~~~i~LT~~G~~~~~~ 100 (139)
T d2a61a1 35 ILQKIYFEGPKRPGELSVLLGVAK--------------STVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIEK 100 (139)
T ss_dssp HHHHHHHHCCBCHHHHHHHHTCCH--------------HHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHhCCCc--------------ccchHHHHHHHhcCeeeeeeccCCCCeEEEEECHHHHHHHHH
Confidence 788899999999999999877543 56888999999999998654 3455 489999999888
Q ss_pred hhc
Q 032124 135 ENS 137 (147)
Q Consensus 135 i~~ 137 (147)
+..
T Consensus 101 ~~~ 103 (139)
T d2a61a1 101 VIE 103 (139)
T ss_dssp HHH
T ss_pred HHH
Confidence 743
No 8
>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]}
Probab=96.60 E-value=0.0022 Score=44.82 Aligned_cols=62 Identities=15% Similarity=0.206 Sum_probs=49.4
Q ss_pred HHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC--CCCe----eeChhhhhhhhh
Q 032124 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGQS----LVLVERLHKLDC 134 (147)
Q Consensus 61 i~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~~~LDr 134 (147)
||..|+-.+++.+..|.+.-|-. .+-+-.+++.||+.|||++.+ ..+| .||++|+..++.
T Consensus 41 vL~~l~~~~~~t~~~la~~l~~~--------------~~~vsr~l~~L~~~G~v~r~~~~~D~R~~~l~lT~~G~~~~~~ 106 (141)
T d1lnwa_ 41 VLKLIDEQRGLNLQDLGRQMCRD--------------KALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHQH 106 (141)
T ss_dssp HHHHHHSSTTCBHHHHHHHTTCC--------------HHHHHHHHHHHHHTTSEEEEECSSSSSSEEEEECHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHCcc--------------HhHHHHHHHHHHHhhceeeeccCCCCcchhhccCHHHHHHHHH
Confidence 56777878889999999976543 377888999999999998654 3465 589999998876
Q ss_pred hh
Q 032124 135 EN 136 (147)
Q Consensus 135 i~ 136 (147)
+.
T Consensus 107 ~~ 108 (141)
T d1lnwa_ 107 AE 108 (141)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 9
>d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=96.39 E-value=0.0027 Score=43.88 Aligned_cols=64 Identities=11% Similarity=0.025 Sum_probs=51.7
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC--CCCe----eeChhhhhhhh
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGQS----LVLVERLHKLD 133 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~~~LD 133 (147)
++|..|+-.|++.+..|+...|-.+ +-+=.+++.||+.|||++.+ .++| .||++|+..++
T Consensus 34 ~vL~~l~~~~~~t~~~la~~~~i~~--------------~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~lT~~G~~~~~ 99 (136)
T d2fbia1 34 RVIRILRQQGEMESYQLANQACILR--------------PSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFV 99 (136)
T ss_dssp HHHHHHHHHCSEEHHHHHHHTTCCH--------------HHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCCCH--------------HHHHHHHHHHHHCCCEEEeecCccCchhhhccCHHHHHHHH
Confidence 4788888899999999999876533 66778999999999998654 4455 47999999998
Q ss_pred hhhc
Q 032124 134 CENS 137 (147)
Q Consensus 134 ri~~ 137 (147)
.+..
T Consensus 100 ~~~~ 103 (136)
T d2fbia1 100 SMSG 103 (136)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7754
No 10
>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=96.36 E-value=0.0058 Score=39.37 Aligned_cols=60 Identities=13% Similarity=0.091 Sum_probs=49.9
Q ss_pred HhHHHHHHHHHHh-CCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeChhhh
Q 032124 56 IRAASMARKIYLR-GGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVLVERL 129 (147)
Q Consensus 56 iRaASi~RklYl~-g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~~G~ 129 (147)
-|+.+|+..|.-. +|+++..+.+.-|- +.+-+..+|+.||+.|||++++++--.|+++--
T Consensus 5 ~r~l~IL~~~a~~~~~~s~~eia~~~~~--------------~~st~~rll~tL~~~g~l~~~~~g~y~lG~~l~ 65 (75)
T d1mkma1 5 KKAFEILDFIVKNPGDVSVSEIAEKFNM--------------SVSNAYKYMVVLEEKGFVLRKKDKRYVPGYKLI 65 (75)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHTTC--------------CHHHHHHHHHHHHHTTSEEECTTSCEEECTHHH
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEECCCCCEeecHHHH
Confidence 4889999988875 68999999998664 338899999999999999999876677777654
No 11
>d1z91a1 a.4.5.28 (A:8-144) Organic hydroperoxide resistance transcriptional regulator OhrR {Bacillus subtilis [TaxId: 1423]}
Probab=96.33 E-value=0.0026 Score=44.12 Aligned_cols=63 Identities=6% Similarity=0.014 Sum_probs=49.1
Q ss_pred HHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC--CCCe----eeChhhhhhhhh
Q 032124 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGQS----LVLVERLHKLDC 134 (147)
Q Consensus 61 i~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~~~LDr 134 (147)
+|..|+..+++.+..|...-|-. .+-+=.+++.||+.|||++.+ +++| .||++|+...++
T Consensus 38 vL~~l~~~~~~t~~~La~~~~i~--------------~~~vsr~i~~L~~~glv~r~~~~~D~R~~~i~lT~~G~~~~~~ 103 (137)
T d1z91a1 38 ALLLLWEHETLTVKKMGEQLYLD--------------SGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKEK 103 (137)
T ss_dssp HHHHHHHHSEEEHHHHHHTTTCC--------------HHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGGG
T ss_pred HHHHHHcCCCCCHHHHHHHHCcC--------------HHHHHHHHHHHhhccceEEeecCCCCCeEEEEECHHHHHHHHH
Confidence 57788889999999999865432 244555999999999998654 4577 799999999887
Q ss_pred hhc
Q 032124 135 ENS 137 (147)
Q Consensus 135 i~~ 137 (147)
+..
T Consensus 104 ~~~ 106 (137)
T d1z91a1 104 AVD 106 (137)
T ss_dssp TTT
T ss_pred HHH
Confidence 643
No 12
>d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]}
Probab=96.21 E-value=0.0066 Score=41.87 Aligned_cols=63 Identities=8% Similarity=0.024 Sum_probs=51.3
Q ss_pred HHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC--CCCe----eeChhhhhhhhh
Q 032124 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGQS----LVLVERLHKLDC 134 (147)
Q Consensus 61 i~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~~~LDr 134 (147)
||-.|+-.||+.+..|+...|-. .+-+-.++..||+.|||++.+ .++| .||++|+..++.
T Consensus 37 iL~~l~~~~~~t~~~La~~l~i~--------------~~~vs~~v~~L~~~gli~r~~~~~D~R~~~l~lT~~G~~~~~~ 102 (140)
T d2etha1 37 AFLYVALFGPKKMKEIAEFLSTT--------------KSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFGE 102 (140)
T ss_dssp HHHHHHHHCCBCHHHHHHHTTSC--------------HHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHHH
T ss_pred HHHHHHHcCCcCHHHHHHHHCcC--------------HHHHHHHHHHHHHCCCeeeeecccccchhhhhcCHHHHHHHHH
Confidence 67888999999999999987754 367888999999999998554 3454 589999998887
Q ss_pred hhc
Q 032124 135 ENS 137 (147)
Q Consensus 135 i~~ 137 (147)
+..
T Consensus 103 ~~~ 105 (140)
T d2etha1 103 ILS 105 (140)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 13
>d2bv6a1 a.4.5.28 (A:5-140) Transcriptional regulator MgrA {Staphylococcus aureus [TaxId: 1280]}
Probab=96.07 E-value=0.0056 Score=42.25 Aligned_cols=63 Identities=6% Similarity=0.033 Sum_probs=50.1
Q ss_pred HHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC--CCCe----eeChhhhhhhhh
Q 032124 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGQS----LVLVERLHKLDC 134 (147)
Q Consensus 61 i~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~~~LDr 134 (147)
||..|+..+|+.++.|+..-|-.+ +-+-.+++.||+.|||++.. .++| .||++|+..++.
T Consensus 39 vL~~i~~~~~~t~~~la~~l~~~~--------------~~~s~~l~~L~~~Gli~r~~~~~D~R~~~l~lT~~G~~~~~~ 104 (136)
T d2bv6a1 39 VLTILWDESPVNVKKVVTELALDT--------------GTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIRPE 104 (136)
T ss_dssp HHHHHHHSSEEEHHHHHHHTTCCT--------------TTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHHHCCCH--------------hHHHHHHHHHHHCCCEEEeecCCcccchhhccCHHHHHHHHH
Confidence 677888899999999999876543 45778999999999998544 3454 569999999887
Q ss_pred hhc
Q 032124 135 ENS 137 (147)
Q Consensus 135 i~~ 137 (147)
+..
T Consensus 105 ~~~ 107 (136)
T d2bv6a1 105 LSN 107 (136)
T ss_dssp HTT
T ss_pred HHH
Confidence 754
No 14
>d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]}
Probab=95.85 E-value=0.0092 Score=41.69 Aligned_cols=63 Identities=6% Similarity=0.053 Sum_probs=51.1
Q ss_pred HHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC--CCCe----eeChhhhhhhhh
Q 032124 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGQS----LVLVERLHKLDC 134 (147)
Q Consensus 61 i~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~~~LDr 134 (147)
+|..|+-++|+.+..|+...+-.+ +-+-.+++.||+.|||++.+ +.+| .||++|+...++
T Consensus 34 iL~~i~~~~~~t~~~la~~l~i~~--------------~tvs~~l~~L~~~glI~r~~~~~D~R~~~l~LT~~G~~~~~~ 99 (144)
T d1lj9a_ 34 YLVRVCENPGIIQEKIAELIKVDR--------------TTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPI 99 (144)
T ss_dssp HHHHHHHSTTEEHHHHHHHHTCCH--------------HHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHCccH--------------hhHHHHHHHHHhhhcccccCCCCCCCccccccCHHHHHHHHH
Confidence 677788889999999999877543 77888999999999998655 3444 589999999888
Q ss_pred hhc
Q 032124 135 ENS 137 (147)
Q Consensus 135 i~~ 137 (147)
+.+
T Consensus 100 ~~~ 102 (144)
T d1lj9a_ 100 IVR 102 (144)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 15
>d1r7ja_ a.4.5.49 (A:) Sso10a (SSO10449) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=95.75 E-value=0.0042 Score=42.32 Aligned_cols=41 Identities=17% Similarity=0.135 Sum_probs=34.8
Q ss_pred CCCchhHHHHHHHHhHhCCceeeCCCCCeeeChhhhhhhhhh
Q 032124 94 SKSSGSVARHILHQLQDTNIIELDSKGQSLVLVERLHKLDCE 135 (147)
Q Consensus 94 ~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~LDri 135 (147)
+.=|-..+.+.|+.|++.|+|++. ++...||++|+.+|+..
T Consensus 28 aNLs~~~~~kyl~~L~~~GLI~~~-~~~Y~iT~kG~~~L~~~ 68 (90)
T d1r7ja_ 28 ANLSYALTGRYIKMLMDLEIIRQE-GKQYMLTKKGEELLEDI 68 (90)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEE-TTEEEECHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHCCCeeec-CCEEEECccHHHHHHHH
Confidence 344567899999999999999986 46789999999999874
No 16
>d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=95.72 E-value=0.011 Score=40.37 Aligned_cols=63 Identities=5% Similarity=-0.011 Sum_probs=49.6
Q ss_pred HHHHHHHhC-CCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCC--CCe----eeChhhhhhhh
Q 032124 61 MARKIYLRG-GLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK--GQS----LVLVERLHKLD 133 (147)
Q Consensus 61 i~RklYl~g-~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~--~GR----~lT~~G~~~LD 133 (147)
+|..|+-.+ ++.++.|....|-.+ +-+-.++..||+.|||++.++ .+| .||++|+..++
T Consensus 33 iL~~l~~~~~~~t~~~la~~~~~~~--------------~~vs~~v~~L~~~gli~r~~~~~D~R~~~i~lT~~G~~~~~ 98 (137)
T d2fbha1 33 VLLHLARHRDSPTQRELAQSVGVEG--------------PTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLIA 98 (137)
T ss_dssp HHHHHHHCSSCCBHHHHHHHHTCCH--------------HHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHHH
T ss_pred HHHHHHHcCCCCcHHHHHHHHCCCH--------------HHHHHHHHHHHHcCCccccCCCCCCCchhhhcCHHHHHHHH
Confidence 567777554 588999999887543 668889999999999997763 344 59999999998
Q ss_pred hhhc
Q 032124 134 CENS 137 (147)
Q Consensus 134 ri~~ 137 (147)
++..
T Consensus 99 ~~~~ 102 (137)
T d2fbha1 99 DIEA 102 (137)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8754
No 17
>d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=95.45 E-value=0.017 Score=39.99 Aligned_cols=62 Identities=13% Similarity=0.043 Sum_probs=47.9
Q ss_pred HHHHHHHh-CCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCC--CCe----eeChhhhhhhh
Q 032124 61 MARKIYLR-GGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK--GQS----LVLVERLHKLD 133 (147)
Q Consensus 61 i~RklYl~-g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~--~GR----~lT~~G~~~LD 133 (147)
+|..|+-. ||+.+..|+...|-.+ +-+-.+++.||+.|||++.+. ++| .||++|+..++
T Consensus 39 vL~~L~~~~g~~t~~~La~~~~~~~--------------~~vs~~i~~L~~~glv~r~~~~~DrR~~~i~LT~~G~~~~~ 104 (145)
T d2hr3a1 39 VLGAIDRLGGDVTPSELAAAERMRS--------------SNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNLY 104 (145)
T ss_dssp HHHHHHHTTSCBCHHHHHHHTTCCH--------------HHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHCCCH--------------HHHHHHHHHHHHcCCeEeeeCccchhHHHhccCHHHHHHHH
Confidence 67788865 6899999999877543 677889999999999996653 343 58999999887
Q ss_pred hhh
Q 032124 134 CEN 136 (147)
Q Consensus 134 ri~ 136 (147)
.+.
T Consensus 105 ~~~ 107 (145)
T d2hr3a1 105 GNR 107 (145)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 18
>d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]}
Probab=95.35 E-value=0.015 Score=38.31 Aligned_cols=54 Identities=17% Similarity=0.129 Sum_probs=41.4
Q ss_pred CCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCe---eeChhhhhhhhhhh
Q 032124 69 GGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQS---LVLVERLHKLDCEN 136 (147)
Q Consensus 69 g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR---~lT~~G~~~LDri~ 136 (147)
+++.+..|...-|-. .+-+-.+|+.||+.|||+...++.. .||++|+..+.+..
T Consensus 20 ~~lt~~eLa~~l~i~--------------~~~vs~~l~~Le~~GlV~r~~D~R~~~i~LT~~G~~~l~~~~ 76 (85)
T d3ctaa1 20 AYLTSSKLADMLGIS--------------QQSASRIIIDLEKNGYITRTVTKRGQILNITEKGLDVLYTEF 76 (85)
T ss_dssp EECCHHHHHHHHTSC--------------HHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCC--------------HHHHHHHHHHHHHCCCeeeecccccccceECHHHHHHHHHHH
Confidence 467788888876643 3677889999999999998654332 27999999887764
No 19
>d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]}
Probab=95.33 E-value=0.011 Score=40.35 Aligned_cols=62 Identities=8% Similarity=0.014 Sum_probs=47.6
Q ss_pred HHHHHHHhC--CCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC--CCCe----eeChhhhhhh
Q 032124 61 MARKIYLRG--GLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGQS----LVLVERLHKL 132 (147)
Q Consensus 61 i~RklYl~g--~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~~~L 132 (147)
||.+||..+ ++.+..|++..+- +.+-+=.+++.||+.|||++.+ +.+| .||++|++.+
T Consensus 38 vL~~l~~~~~~~~t~~~la~~l~~--------------~~~tvs~~i~~Le~~gli~r~~~~~D~R~~~i~LT~~G~~~~ 103 (115)
T d2frha1 38 VLTYISENKEKEYYLKDIINHLNY--------------KQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKI 103 (115)
T ss_dssp HHHHHHHTCCSEEEHHHHHHHSSS--------------HHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHCC--------------CHhHHHHHHHHHHhhhhheeeecccCCceEEEEECHHHHHHH
Confidence 577788763 4778888887553 3367788999999999998765 3455 4999999998
Q ss_pred hhhh
Q 032124 133 DCEN 136 (147)
Q Consensus 133 Dri~ 136 (147)
+.+.
T Consensus 104 ~~~~ 107 (115)
T d2frha1 104 ESLL 107 (115)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 20
>d1in4a1 a.4.5.11 (A:255-329) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}
Probab=95.18 E-value=0.018 Score=38.44 Aligned_cols=58 Identities=14% Similarity=0.200 Sum_probs=42.1
Q ss_pred HHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeChhhhhhhh
Q 032124 62 ARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVLVERLHKLD 133 (147)
Q Consensus 62 ~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~LD 133 (147)
+-+-|--||||+++|+..-|-.+ ..|.=-+===|-+.|+|++++ .||++|++|.+.|.
T Consensus 14 l~~~f~ggPvGl~tlAa~l~e~~-------------~TiEdviEPyLiq~G~i~RTp-RGR~~T~~~~~hl~ 71 (75)
T d1in4a1 14 IIEIYRGGPVGLNALAASLGVEA-------------DTLSEVYEPYLLQAGFLARTP-RGRIVTEKAYKHLK 71 (75)
T ss_dssp HHHHSTTCCBCHHHHHHHHTSCH-------------HHHHHHTHHHHHHTTSEEEET-TEEEECHHHHHHTT
T ss_pred HHHHhCCCCCcHHHHHHHHcCCh-------------hHHHHHhhHHHHHhhHHhhCC-chHHhHHHHHHHcC
Confidence 44445568999999999877532 233333333467899999998 59999999998774
No 21
>d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]}
Probab=95.00 E-value=0.029 Score=38.12 Aligned_cols=63 Identities=8% Similarity=-0.039 Sum_probs=48.3
Q ss_pred HHHHHHHhC--CCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC--CCC----eeeChhhhhhh
Q 032124 61 MARKIYLRG--GLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGQ----SLVLVERLHKL 132 (147)
Q Consensus 61 i~RklYl~g--~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~--~~G----R~lT~~G~~~L 132 (147)
||..|+-.+ ++.+..|...-|-. .+-+-.+++.||+.|||++.. +.+ =.||++|+..+
T Consensus 34 vL~~l~~~~~~~it~~ela~~~~~~--------------~~~vs~~l~~L~~~g~v~r~~~~~D~R~~~i~lT~~G~~~~ 99 (135)
T d3broa1 34 IIDYLSRNKNKEVLQRDLESEFSIK--------------SSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLE 99 (135)
T ss_dssp HHHHHHHTTTSCCBHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTH
T ss_pred HHHHHHHcCCCCCCHHHHHHHHCcC--------------HhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccHHHHHHH
Confidence 677778764 48888999876643 366778999999999997553 344 36999999998
Q ss_pred hhhhc
Q 032124 133 DCENS 137 (147)
Q Consensus 133 Dri~~ 137 (147)
..+.+
T Consensus 100 ~~~~~ 104 (135)
T d3broa1 100 TIILS 104 (135)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87754
No 22
>d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA {Salmonella typhimurium [TaxId: 90371]}
Probab=94.69 E-value=0.036 Score=37.85 Aligned_cols=63 Identities=11% Similarity=0.047 Sum_probs=44.7
Q ss_pred HHHHHHH-hCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC--CCCe----eeChhhhhhhh
Q 032124 61 MARKIYL-RGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGQS----LVLVERLHKLD 133 (147)
Q Consensus 61 i~RklYl-~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~~~LD 133 (147)
+|..|+- .+++-+..|....+-.+ +-+-.+++.||+.|||++.+ +.+| .||++|+..++
T Consensus 36 ~L~~l~~~~~~~t~~~la~~l~i~~--------------~~vs~~l~~L~~~glI~~~~~~~D~R~~~l~lT~~G~~~~~ 101 (140)
T d3deua1 36 TLHNIHQLPPDQSQIQLAKAIGIEQ--------------PSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIA 101 (140)
T ss_dssp HHHHHHHSCSSEEHHHHHHHHTSCH--------------HHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHH
T ss_pred HHHHHHHcCCCccHHHHHHHHCCCH--------------hHHHHHHHHHHhCCCEEecccCCCCCceeeEECHHHHHHHH
Confidence 5667775 45588888988776533 44557999999999998655 3443 59999999998
Q ss_pred hhhc
Q 032124 134 CENS 137 (147)
Q Consensus 134 ri~~ 137 (147)
.+..
T Consensus 102 ~~~~ 105 (140)
T d3deua1 102 EMEE 105 (140)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 23
>d1xd7a_ a.4.5.55 (A:) Hypothetical protein ywnA {Bacillus subtilis [TaxId: 1423]}
Probab=94.66 E-value=0.041 Score=37.83 Aligned_cols=56 Identities=14% Similarity=0.167 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC--CCCeeeChhh
Q 032124 58 AASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGQSLVLVER 128 (147)
Q Consensus 58 aASi~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~--~~GR~lT~~G 128 (147)
|.-+|=.|..++|+....++..+|- |-+++|++|++|.++|||+... .||+ |+..-
T Consensus 6 Av~~L~~la~~~~~ss~~IA~~~~~--------------~~~~v~kIl~~L~~aglV~s~rG~~GGy-Lar~p 63 (127)
T d1xd7a_ 6 AIHILSLISMDEKTSSEIIADSVNT--------------NPVVVRRMISLLKKADILTSRAGVPGAS-LKKDP 63 (127)
T ss_dssp HHHHHHHHHTCSCCCHHHHHHHHTS--------------CHHHHHHHHHHHHHTTSEECCSSSSSCE-ESSCG
T ss_pred HHHHHHHHhcCCCCCHHHHHHHhCc--------------CHHHHHHHHHHHHHhCcccccCCCCCcc-ccCCH
Confidence 4444555566789999999998774 3479999999999999998554 4675 87543
No 24
>d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]}
Probab=94.55 E-value=0.016 Score=39.57 Aligned_cols=63 Identities=10% Similarity=0.067 Sum_probs=48.2
Q ss_pred HHHHHHHh--CCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC--CCCe----eeChhhhhhh
Q 032124 61 MARKIYLR--GGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGQS----LVLVERLHKL 132 (147)
Q Consensus 61 i~RklYl~--g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~~~L 132 (147)
+|..||.. +++.+..|+...|- +.+-+=.+++.||+.|||++.. ..+| .||++|+..+
T Consensus 37 vL~~l~~~~~~~~t~~ela~~l~~--------------~~~~vs~~i~~Le~~gli~r~~~~~D~R~~~i~LT~~G~~~~ 102 (115)
T d1hsja1 37 ILNHILRSESNEISSKEIAKCSEF--------------KPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANI 102 (115)
T ss_dssp HHHHHHTCSCSEEEHHHHHHSSCC--------------CHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHH
T ss_pred HHHHHHccCCCCcCHHHHHHHHCC--------------ChhhHHHHHHHHHHcCCeEEEeecCCCceEEEEECHHHHHHH
Confidence 78888874 46888899886554 3356677899999999998554 4566 4899999999
Q ss_pred hhhhc
Q 032124 133 DCENS 137 (147)
Q Consensus 133 Dri~~ 137 (147)
+.+.+
T Consensus 103 ~~~~~ 107 (115)
T d1hsja1 103 QKLIS 107 (115)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87653
No 25
>d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]}
Probab=94.46 E-value=0.022 Score=38.06 Aligned_cols=65 Identities=8% Similarity=0.030 Sum_probs=49.2
Q ss_pred HHHHHHHHH-hCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCC----CC--eeeChhhhhh
Q 032124 59 ASMARKIYL-RGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK----GQ--SLVLVERLHK 131 (147)
Q Consensus 59 ASi~RklYl-~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~----~G--R~lT~~G~~~ 131 (147)
..|++.|+- .||+.+..|+...|-. .+-++.+|+.||+.|||++.+. +| ..+|..|...
T Consensus 24 ~~iL~~L~~~~~~~t~~eLa~~~~i~--------------~~tvs~~l~~L~~~GlV~r~~~~~d~rg~~~~~~~~~~~~ 89 (109)
T d2d1ha1 24 VAVLLKMVEIEKPITSEELADIFKLS--------------KTTVENSLKKLIELGLVVRTKTEGKKIGRPKYYYSISSNI 89 (109)
T ss_dssp HHHHHHHHHHCSCEEHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEEEC-------CCEEEEECTTH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCcc--------------HhHHHHHHHHHHHCCCEEEeecCCCCCceeEEEeeCCHHH
Confidence 347888875 5789999999987754 3789999999999999986542 23 3678888887
Q ss_pred hhhhhc
Q 032124 132 LDCENS 137 (147)
Q Consensus 132 LDri~~ 137 (147)
..++.+
T Consensus 90 ~~~i~~ 95 (109)
T d2d1ha1 90 LEKIRN 95 (109)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777653
No 26
>d2fxaa1 a.4.5.28 (A:6-167) Protease production regulatory protein Hpr {Bacillus subtilis [TaxId: 1423]}
Probab=94.40 E-value=0.029 Score=40.54 Aligned_cols=63 Identities=10% Similarity=0.058 Sum_probs=49.2
Q ss_pred HHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCC--CCe----eeChhhhhhhhh
Q 032124 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK--GQS----LVLVERLHKLDC 134 (147)
Q Consensus 61 i~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~--~GR----~lT~~G~~~LDr 134 (147)
||..|+-.+++.++.|++.-+-.+ +-+=.+++.||+.|||++.+. +.| .||++|+..++.
T Consensus 46 vL~~l~~~~~~t~~~la~~~~l~~--------------~tvs~~i~rL~~~gli~r~~~~~D~R~~~l~lT~~G~~~~~~ 111 (162)
T d2fxaa1 46 ILWIAYQLNGASISEIAKFGVMHV--------------STAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVFWS 111 (162)
T ss_dssp HHHHHHHHTSEEHHHHHHHTTCCH--------------HHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHHHH
T ss_pred HHhhhccCCCcCHHHHHHHHcCCc--------------hhhHHHHHHHHHCCCceeecccccCeeeeeccCHhHHHHHHH
Confidence 678888899999999999766433 667789999999999996653 455 489999999877
Q ss_pred hhc
Q 032124 135 ENS 137 (147)
Q Consensus 135 i~~ 137 (147)
+.+
T Consensus 112 ~~~ 114 (162)
T d2fxaa1 112 LLE 114 (162)
T ss_dssp HHH
T ss_pred HHH
Confidence 644
No 27
>d1z7ua1 a.4.5.69 (A:1-108) Hypothetical protein EF0647 {Enterococcus faecalis [TaxId: 1351]}
Probab=94.33 E-value=0.029 Score=38.72 Aligned_cols=62 Identities=15% Similarity=0.219 Sum_probs=48.3
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCC------eeeChhhhhhhh
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQ------SLVLVERLHKLD 133 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~G------R~lT~~G~~~LD 133 (147)
-|++.|+ .|+..-+.|.+.-. .-|.+++=.-|++||+.|+|++..... ..||+.|+.++.
T Consensus 23 ~Il~~L~-~g~~RF~el~~~l~-------------gIS~~~Ls~rLk~L~~~glv~R~~~~~~p~~veY~LT~~G~~L~p 88 (108)
T d1z7ua1 23 SLMDELF-QGTKRNGELMRALD-------------GITQRVLTDRLREMEKDGLVHRESFNELPPRVEYTLTPEGYALYD 88 (108)
T ss_dssp HHHHHHH-HSCBCHHHHHHHST-------------TCCHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHHHHHHH
T ss_pred HHHHHHH-cCCCCHHHHHHHCc-------------CCChhHHHHHHHHHHHCCcceeeccCCCcceehhhhchhHHHHHH
Confidence 4788886 58888888877532 356789999999999999999764322 789999998876
Q ss_pred hh
Q 032124 134 CE 135 (147)
Q Consensus 134 ri 135 (147)
-+
T Consensus 89 il 90 (108)
T d1z7ua1 89 AL 90 (108)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 28
>d1xmaa_ a.4.5.61 (A:) Predicted transcriptional regulator {Clostridium thermocellum [TaxId: 1515]}
Probab=94.25 E-value=0.023 Score=38.40 Aligned_cols=45 Identities=7% Similarity=0.008 Sum_probs=33.2
Q ss_pred CCCCCchhHHHHHHHHhHhCCceeeC---CCCCe-----eeChhhhhhhhhhh
Q 032124 92 HFSKSSGSVARHILHQLQDTNIIELD---SKGQS-----LVLVERLHKLDCEN 136 (147)
Q Consensus 92 h~~~asgsiiR~~LqqLE~~glV~k~---~~~GR-----~lT~~G~~~LDri~ 136 (147)
++..-|-+.|=.+|+.||+.|||+.. ..+|| .||++|+..|....
T Consensus 36 ~~~~is~gslY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~iT~~G~~~l~~~~ 88 (103)
T d1xmaa_ 36 ELYVIKETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRITPEGIKYYKQKC 88 (103)
T ss_dssp TSCCCCHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEECHHHHHHHHHHH
T ss_pred CeecCCCCchHHHHHHHHHCCCeEEEeeccCCCCCceEEEECHHHHHHHHHHH
Confidence 44556678889999999999999732 23443 79999999887543
No 29
>d1ixsb1 a.4.5.11 (B:243-318) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}
Probab=94.22 E-value=0.023 Score=38.03 Aligned_cols=54 Identities=7% Similarity=0.094 Sum_probs=39.3
Q ss_pred HHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeChhhhhhhh
Q 032124 66 YLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVLVERLHKLD 133 (147)
Q Consensus 66 Yl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~LD 133 (147)
|--||||+.+|+..-|-.+. .|.=-+===|-+.|+|++++ .||++|++|.+-|.
T Consensus 18 f~ggPVGl~tlA~~lgE~~~-------------TiEdviEPyLiq~G~i~RTp-rGR~~T~~a~~hLg 71 (76)
T d1ixsb1 18 FGGGPVGLATLATALSEDPG-------------TLEEVHEPYLIRQGLLKRTP-RGRVATELAYRHLG 71 (76)
T ss_dssp SCSSCCCSHHHHGGGSSCTT-------------HHHHTSHHHHHHTTSEEECS-SSEEECHHHHHHHT
T ss_pred hCCCCccHHHHHHHHcCChh-------------HHHHHhhHHHHHHhHHhhCC-ChHHhHHHHHHHcC
Confidence 44589999999998775432 22222223466789999997 69999999998774
No 30
>d2hzta1 a.4.5.69 (A:4-98) Putative transcriptional regulator YtcD {Bacillus subtilis [TaxId: 1423]}
Probab=94.14 E-value=0.055 Score=36.30 Aligned_cols=63 Identities=10% Similarity=0.035 Sum_probs=48.6
Q ss_pred HHHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCC------eeeChhhhhhh
Q 032124 59 ASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQ------SLVLVERLHKL 132 (147)
Q Consensus 59 ASi~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~G------R~lT~~G~~~L 132 (147)
.-|++.| ..||...+.|.+.-. .-|.+++=.-|++||+.|+|++..... ..||+.|++++
T Consensus 14 l~Il~~L-~~g~~rF~el~~~l~-------------gis~~~Ls~rLk~Le~~glv~r~~~~~~p~~veY~LT~~G~~L~ 79 (95)
T d2hzta1 14 CVILCHL-THGKKRTSELKRLMP-------------NITQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLE 79 (95)
T ss_dssp HHHHHHH-TTCCBCHHHHHHHCT-------------TSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGH
T ss_pred HHHHHHH-HcCCCCHHHHHHHhh-------------cCChhHHHHHHHHHHHhHHHhheeccccccchhhhhhhhHHHHH
Confidence 4588887 478888888877432 356689999999999999999765322 78999999987
Q ss_pred hhh
Q 032124 133 DCE 135 (147)
Q Consensus 133 Dri 135 (147)
.-+
T Consensus 80 pil 82 (95)
T d2hzta1 80 GIL 82 (95)
T ss_dssp HHH
T ss_pred HHH
Confidence 644
No 31
>d2hs5a1 a.4.5.6 (A:25-93) Putative transcriptional regulator RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=94.05 E-value=0.057 Score=33.93 Aligned_cols=40 Identities=10% Similarity=0.086 Sum_probs=33.3
Q ss_pred chhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeC
Q 032124 72 GVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVL 125 (147)
Q Consensus 72 GV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT 125 (147)
-...|+..||- |...+|.+|+.||+.|+|+..+..|-.+.
T Consensus 27 ~~~~La~~~~v--------------Sr~tvr~Al~~L~~~Gli~~~~~~G~~V~ 66 (69)
T d2hs5a1 27 SEPDICAALDV--------------SRNTVREAFQILIEDRLVAHELNRGVFVR 66 (69)
T ss_dssp CHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEETTTEEEEC
T ss_pred CHHHHHHHHCC--------------CHHHHHHHHHHHHHCCcEEEEcCCEEEec
Confidence 36778888875 44899999999999999999887787764
No 32
>d1v4ra1 a.4.5.6 (A:1-100) Transcriptional repressor TraR, N-terminal domain {Streptomyces sp. [TaxId: 1931]}
Probab=93.98 E-value=0.037 Score=37.24 Aligned_cols=78 Identities=22% Similarity=0.309 Sum_probs=53.7
Q ss_pred CCCCCchhHHhHHHHHHHHHHhCC------C-chhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCC
Q 032124 47 APYDPDWYYIRAASMARKIYLRGG------L-GVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK 119 (147)
Q Consensus 47 aP~~~DW~YiRaASi~RklYl~g~------v-GV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~ 119 (147)
+|..+- |...+.-+|..-..|- + .+..|+..||-. ...+|.||+.|++.|||+..+.
T Consensus 5 ~p~~~~--y~qi~~~i~~~I~~g~l~~G~~LPs~r~La~~~~vS--------------r~tvr~Al~~L~~~Gli~~~~g 68 (100)
T d1v4ra1 5 APEGKG--YADVATHFRTLIKSGELAPGDTLPSVADIRAQFGVA--------------AKTVSRALAVLKSEGLVSSRGA 68 (100)
T ss_dssp CCSSCC--HHHHHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSSC--------------TTHHHHHTTTTTTSSCCEEETT
T ss_pred CCCCCH--HHHHHHHHHHHHHcCCCCCcCCCccHHHHHHHHCCC--------------HHHHHHHHHHHHHCCcEEEecC
Confidence 344443 5566677777666652 3 677788888753 4789999999999999998887
Q ss_pred CCeeeChh-----hhhhhhhhhcCCc
Q 032124 120 GQSLVLVE-----RLHKLDCENSNGM 140 (147)
Q Consensus 120 ~GR~lT~~-----G~~~LDri~~~~~ 140 (147)
.|-.+++. ....+.++..+|+
T Consensus 69 ~G~~V~~~~~~~~~~~~~~~~~~~~~ 94 (100)
T d1v4ra1 69 LGTVVEKNPIVITGADRLKRMEKNGM 94 (100)
T ss_dssp TEEESCSCCCCCSSHHHHHCTTSCCC
T ss_pred CEEEECCCCcccchHHHHHHHHHccC
Confidence 78777752 3334455555554
No 33
>d3bwga1 a.4.5.6 (A:5-82) Transcriptional regulator YydK {Bacillus subtilis [TaxId: 1423]}
Probab=93.52 E-value=0.017 Score=37.14 Aligned_cols=44 Identities=14% Similarity=0.021 Sum_probs=36.4
Q ss_pred chhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeChhhh
Q 032124 72 GVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVLVERL 129 (147)
Q Consensus 72 GV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~~G~ 129 (147)
....|+..||- |.+.+|.||+.||..|+|+..+..|-.+++.-.
T Consensus 24 se~~La~~~~v--------------Sr~tvr~Al~~L~~~Gli~~~~g~G~~V~~~~~ 67 (78)
T d3bwga1 24 VLETLMAQFEV--------------SKSTITKSLELLEQKGAIFQVRGSGIFVRKHKR 67 (78)
T ss_dssp CHHHHHHHTTC--------------CHHHHHHHHHHHHHTTSEEEETTTEEEECCCCC
T ss_pred CHHHHHHHHCC--------------CHHHHHHHHHHHHHCCcEEEEcCcEEEEccCCH
Confidence 56778888774 458999999999999999999888888876544
No 34
>d2fbka1 a.4.5.28 (A:8-179) Transcriptional regulator DR1159 {Deinococcus radiodurans [TaxId: 1299]}
Probab=93.43 E-value=0.038 Score=39.68 Aligned_cols=62 Identities=8% Similarity=0.042 Sum_probs=41.4
Q ss_pred HHHHHHHhCC---CchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCC--CCe----eeChhhhhh
Q 032124 61 MARKIYLRGG---LGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK--GQS----LVLVERLHK 131 (147)
Q Consensus 61 i~RklYl~g~---vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~--~GR----~lT~~G~~~ 131 (147)
||..||..|| +.++.|....|-.+ +-+=.+++.||+.|||++..+ ++| .||++|+..
T Consensus 67 vL~~L~~~~~~~~lt~~eLa~~l~i~~--------------~tvsr~l~~Le~~GlV~r~~~~~DrR~~~i~LT~~G~~l 132 (172)
T d2fbka1 67 LLLTLYRSAPPEGLRPTELSALAAISG--------------PSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRAL 132 (172)
T ss_dssp HHHHHHHHCCSSCBCHHHHHHHCSCCS--------------GGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHH
T ss_pred HHHHHHhhCCCCCcCHHHHHHHHCcCH--------------hHHHHHHHHHHhCCCeeeeccccchhhHHhhcCHHHHHH
Confidence 5666666654 56677777655432 223346899999999997753 344 599999999
Q ss_pred hhhhh
Q 032124 132 LDCEN 136 (147)
Q Consensus 132 LDri~ 136 (147)
++.+.
T Consensus 133 ~~~~~ 137 (172)
T d2fbka1 133 VTHLL 137 (172)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
No 35
>d1yyva1 a.4.5.69 (A:9-122) Putative transcriptional regulator YtfH {Salmonella typhimurium [TaxId: 90371]}
Probab=93.42 E-value=0.053 Score=37.64 Aligned_cols=63 Identities=14% Similarity=0.044 Sum_probs=48.9
Q ss_pred HHHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCC-CC-----eeeChhhhhhh
Q 032124 59 ASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK-GQ-----SLVLVERLHKL 132 (147)
Q Consensus 59 ASi~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~-~G-----R~lT~~G~~~L 132 (147)
.-|++.|+ .||...+.|++.-. .-|.+++=.-|.+||+.|+|++... .. ..||+.|++++
T Consensus 27 l~Il~~L~-~g~~RF~el~~~l~-------------gis~~~Ls~rL~~Le~~glv~R~~~~~~p~~veY~LT~~G~~L~ 92 (114)
T d1yyva1 27 VLILVALR-DGTHRFSDLRRKMG-------------GVSEKMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQVS 92 (114)
T ss_dssp HHHHHHGG-GCCEEHHHHHHHST-------------TCCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHHHHHH
T ss_pred HHHHHHHh-cCCCCHHHHHHHcc-------------ccchhHHHHHHHHHHHHHHHhhcccCCCCchhHhHhhHhHHHHH
Confidence 45888886 68888888887532 3566888899999999999997652 22 78999999987
Q ss_pred hhh
Q 032124 133 DCE 135 (147)
Q Consensus 133 Dri 135 (147)
.-+
T Consensus 93 ~il 95 (114)
T d1yyva1 93 DKV 95 (114)
T ss_dssp HHH
T ss_pred HHH
Confidence 644
No 36
>d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}
Probab=93.34 E-value=0.05 Score=37.36 Aligned_cols=63 Identities=10% Similarity=-0.039 Sum_probs=46.7
Q ss_pred HHHHHHHHhC--CCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC--CCCe----eeChhhhhh
Q 032124 60 SMARKIYLRG--GLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGQS----LVLVERLHK 131 (147)
Q Consensus 60 Si~RklYl~g--~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~~~ 131 (147)
.||..|+-.+ |+.+..|+...+- +.+-+-.+++.||+.|||++.. ...| .||++|+..
T Consensus 38 ~iL~~l~~~~~~~~t~~eia~~~~~--------------~~~~vs~~l~~L~~~g~v~r~~~~~D~R~~~i~lT~~G~~~ 103 (125)
T d1p4xa1 38 ILLTYLFHQQENTLPFKKIVSDLCY--------------KQSDLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQREK 103 (125)
T ss_dssp HHHHHHHSCSCSEEEHHHHHHHSSS--------------CGGGTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHH
T ss_pred HHHHHHHHhccCCcCHHHHHHHhCC--------------CcchHHHHHHHHHHCCCceeecccCCCCeEEEEECHHHHHH
Confidence 3777887763 6778889887653 3356778999999999998665 3455 489999988
Q ss_pred hhhhh
Q 032124 132 LDCEN 136 (147)
Q Consensus 132 LDri~ 136 (147)
+..+.
T Consensus 104 ~~~~~ 108 (125)
T d1p4xa1 104 IAERV 108 (125)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76553
No 37
>d1yg2a_ a.4.5.61 (A:) Hypothetical protein AphA {Vibrio cholerae [TaxId: 666]}
Probab=93.25 E-value=0.041 Score=39.56 Aligned_cols=71 Identities=7% Similarity=-0.028 Sum_probs=48.1
Q ss_pred HHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC--CCCe------eeChhhhhhh
Q 032124 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGQS------LVLVERLHKL 132 (147)
Q Consensus 61 i~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~--~~GR------~lT~~G~~~L 132 (147)
||--|.- +|.-==.|++.+-.. ..++...|-+-|=.+|+.||+.|||+... .+|+ .||++|+..|
T Consensus 6 iLg~L~~-~~~~GYei~~~~~~~------~~~~w~~s~g~iY~~L~kLe~~Gli~~~~~~~~~~~~rk~Y~iT~~Gr~~l 78 (178)
T d1yg2a_ 6 ILTVLST-RDATGYDITKEFSAS------IGYFWKASHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQAGRSAL 78 (178)
T ss_dssp HHHHHHH-CCBCHHHHHHHHTTG------GGGTCCCCHHHHHHHHHHHHHTTSEEECCC---------CEEECHHHHHHH
T ss_pred HHHHHhh-CCCCHHHHHHHHHHH------hCCccCCCCCcHHHHHHHHHHCCCeEEEeeecCCCCCceEEEECHHHHHHH
Confidence 3333443 454444477776432 45778889999999999999999998532 2333 7999999988
Q ss_pred hhhhcC
Q 032124 133 DCENSN 138 (147)
Q Consensus 133 Dri~~~ 138 (147)
.+-...
T Consensus 79 ~~wl~~ 84 (178)
T d1yg2a_ 79 GEWFDQ 84 (178)
T ss_dssp HHHHHS
T ss_pred HHHHhc
Confidence 875443
No 38
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=93.08 E-value=0.078 Score=33.78 Aligned_cols=42 Identities=19% Similarity=0.131 Sum_probs=34.3
Q ss_pred CCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeee
Q 032124 70 GLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLV 124 (147)
Q Consensus 70 ~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~l 124 (147)
|..+..+...+|- .|-+-++..|++||+.|||++.+...|.|
T Consensus 24 ~Ps~rei~~~~g~-------------~S~stv~~~l~~Le~kG~I~r~~~~~R~i 65 (71)
T d1jhfa1 24 PPTRAEIAQRLGF-------------RSPNAAEEHLKALARKGVIEIVSGASRGI 65 (71)
T ss_dssp CCCHHHHHHHTTC-------------SSHHHHHHHHHHHHHTTSEEECSSSSSCE
T ss_pred CCCHHHHHHHcCC-------------CCHHHHHHHHHHHHHCcCeecCCCCCcee
Confidence 6788888887762 36688999999999999999987655654
No 39
>d2fswa1 a.4.5.69 (A:3-104) Hypothetical protein PG0823 {Porphyromonas gingivalis [TaxId: 837]}
Probab=92.84 E-value=0.083 Score=35.85 Aligned_cols=63 Identities=14% Similarity=0.013 Sum_probs=47.2
Q ss_pred HHHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCC------eeeChhhhhhh
Q 032124 59 ASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQ------SLVLVERLHKL 132 (147)
Q Consensus 59 ASi~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~G------R~lT~~G~~~L 132 (147)
.-|++.|. .|+..-+.|.+.-. .-|.+++=.-|++||+.|+|++....+ ..||+.|++++
T Consensus 23 l~Il~~L~-~g~~rF~el~~~l~-------------gIs~~~Ls~rLkeL~~~glv~r~~~~~~p~~veY~LT~~G~~L~ 88 (102)
T d2fswa1 23 LLIIFQIN-RRIIRYGELKRAIP-------------GISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPLGEKVL 88 (102)
T ss_dssp HHHHHHHT-TSCEEHHHHHHHST-------------TCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHTTH
T ss_pred HHHHHHHc-cCCCCHHHHHhhCc-------------ccchhHHHHHHHHHHHCCceeecccCCCCCeehhhhhHhHHHHH
Confidence 34777775 68888888877431 356688888899999999999764221 56999999987
Q ss_pred hhh
Q 032124 133 DCE 135 (147)
Q Consensus 133 Dri 135 (147)
.-+
T Consensus 89 pil 91 (102)
T d2fswa1 89 PII 91 (102)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 40
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=92.67 E-value=0.11 Score=34.80 Aligned_cols=50 Identities=20% Similarity=0.260 Sum_probs=40.5
Q ss_pred HHHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC--CCCe
Q 032124 59 ASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGQS 122 (147)
Q Consensus 59 ASi~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~--~~GR 122 (147)
|.|+..|+-+|+..+..+.+.-|-. .+-+..+|+.||+.|||++.. +++|
T Consensus 23 ~~v~~~L~~~g~~t~~eia~~~~i~--------------~~~v~~~l~~L~~~GlV~r~~~~~~~r 74 (109)
T d1sfxa_ 23 VRIYSLLLERGGMRVSEIARELDLS--------------ARFVRDRLKVLLKRGFVRREIVEKGWV 74 (109)
T ss_dssp HHHHHHHHHHCCBCHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEEEEESSSE
T ss_pred HHHHHHHHhcCCCCHHHHHHHhCCC--------------cchHHHHHHHHHhCCCEEEEeccCCCc
Confidence 5578888889999999999987743 378999999999999998543 3454
No 41
>d1p4xa2 a.4.5.28 (A:126-250) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}
Probab=91.75 E-value=0.1 Score=35.96 Aligned_cols=62 Identities=5% Similarity=-0.080 Sum_probs=45.1
Q ss_pred HHHHHHHhC--CCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC--CCCe----eeChhhhhhh
Q 032124 61 MARKIYLRG--GLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS--KGQS----LVLVERLHKL 132 (147)
Q Consensus 61 i~RklYl~g--~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~~~L 132 (147)
||-.||-.+ ++.++.++..-|-. .+-+-.+++.||+.|||++.. +++| .||++|++.+
T Consensus 38 vL~~l~~~~~~~~~~~~ia~~l~~~--------------~~~vs~~v~~L~~~glV~r~~~~~D~R~v~i~LT~~G~~~~ 103 (125)
T d1p4xa2 38 ILAIITSQNKNIVLLKDLIETIHHK--------------YPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHA 103 (125)
T ss_dssp HHHHHHTTTTCCEEHHHHHHHSSSC--------------HHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHH
T ss_pred HHHHHHHccCCCccHHHHHHHHCCC--------------cchHHHHHHHHHhccCEeeeecCCCCCeEEEEECHHHHHHH
Confidence 677777643 56677788765543 367778999999999998544 4566 4899999987
Q ss_pred hhhh
Q 032124 133 DCEN 136 (147)
Q Consensus 133 Dri~ 136 (147)
+.+.
T Consensus 104 ~~l~ 107 (125)
T d1p4xa2 104 EQLL 107 (125)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 42
>d2f2ea1 a.4.5.69 (A:5-146) Hypothetical protein PA1607 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=91.55 E-value=0.21 Score=35.66 Aligned_cols=62 Identities=11% Similarity=0.142 Sum_probs=47.3
Q ss_pred HHHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCC-----CeeeChhhhhhhh
Q 032124 59 ASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKG-----QSLVLVERLHKLD 133 (147)
Q Consensus 59 ASi~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~-----GR~lT~~G~~~LD 133 (147)
.-|+|.|+ .|+...+.|.+.-| -|.+++-.-|++||+.|+|++.... -..||++|+.++.
T Consensus 23 l~Il~~l~-~G~~rf~el~~~lg--------------is~~vLs~rL~~L~~~gLv~r~~~~~p~r~~Y~LT~~G~~L~p 87 (142)
T d2f2ea1 23 MLIVRDAF-EGLTRFGEFQKSLG--------------LAKNILAARLRNLVEHGVMVAVPAESGSHQEYRLTDKGRALFP 87 (142)
T ss_dssp HHHHHHHH-TTCCSHHHHHHHHC--------------CCHHHHHHHHHHHHHTTSEEEEECSSSSCEEEEECHHHHTTHH
T ss_pred HHHHHHHH-cCCCCHHHHHHHhh--------------ccHHHHHHHHHHHHHhcceeeecCCCCCeeEEecCcCcchHHH
Confidence 35888875 68988888888643 3458899999999999999973322 2689999998875
Q ss_pred hh
Q 032124 134 CE 135 (147)
Q Consensus 134 ri 135 (147)
-+
T Consensus 88 il 89 (142)
T d2f2ea1 88 LL 89 (142)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 43
>d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=90.58 E-value=0.29 Score=30.26 Aligned_cols=47 Identities=15% Similarity=0.135 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeC
Q 032124 57 RAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELD 117 (147)
Q Consensus 57 RaASi~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~ 117 (147)
..+.|++.|+-+||+....|.+.-|-. .+-++.++..|++.|+|+..
T Consensus 7 N~~~Il~~l~~~g~~sr~eLa~~~glS--------------~~Tv~~~l~~L~~~Glv~e~ 53 (71)
T d1z05a1 7 NAGRVYKLIDQKGPISRIDLSKESELA--------------PASITKITRELIDAHLIHET 53 (71)
T ss_dssp HHHHHHHHHHHHCSBCHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHCCC--------------HHHHHHHHHHHHHCCCEEEe
Confidence 457899999999999999999987753 47899999999999999754
No 44
>d2axla1 a.4.5.43 (A:1-144) Werner syndrome ATP-dependent helicase WRN {Human (Homo sapiens) [TaxId: 9606]}
Probab=90.25 E-value=0.18 Score=35.79 Aligned_cols=78 Identities=13% Similarity=0.069 Sum_probs=57.0
Q ss_pred HHHHHHHHHH-hCCCchhhHHHHhcCCCCCCCCC-----CCCCCC---chhHHHHHHHHhHhCCceeeCCCCCe-----e
Q 032124 58 AASMARKIYL-RGGLGVGSFRRIYGGGKRNGSRP-----PHFSKS---SGSVARHILHQLQDTNIIELDSKGQS-----L 123 (147)
Q Consensus 58 aASi~RklYl-~g~vGV~~lr~~YGg~krrG~~P-----~h~~~a---sgsiiR~~LqqLE~~glV~k~~~~GR-----~ 123 (147)
|-.||..|+- .+..|++.+..++-|.+..-++. +.|..+ +-.-+|.++.||-..|+++..+..|. .
T Consensus 15 A~~iLs~V~~~~~rfg~~~iidiL~Gs~~~kI~~~~~~l~~yG~Gk~~s~~~w~~li~qli~~G~L~e~~~~~~~~~~l~ 94 (144)
T d2axla1 15 AFKLLSAVDILGEKFGIGLPILFLRGSNSQRLADQYRRHSLFGTGKDQTESWWKAFSRQLITEGFLVEVSRYNKFMKICA 94 (144)
T ss_dssp HHHHHHHHHHTTTCSCSHHHHHHHTCCSCSHHHHHTCSCTTTTGGGGSCHHHHHHHHHHHHHHSSEEEETTSCTTTCEEE
T ss_pred HHHHHHHHHHhcccccchHHHHHHHhcccHHHHHHhhcccccCCCCcCCHHHHHHHHHHHHHcCcceeecccCcceeeee
Confidence 3345666665 57899999999999887664432 233333 33589999999999999976665553 8
Q ss_pred eChhhhhhhhhh
Q 032124 124 VLVERLHKLDCE 135 (147)
Q Consensus 124 lT~~G~~~LDri 135 (147)
||++|+..|...
T Consensus 95 lt~kg~~~L~g~ 106 (144)
T d2axla1 95 LTKKGRNWLHKA 106 (144)
T ss_dssp ECHHHHHHHHHT
T ss_pred ECHHHHHHHhcc
Confidence 999999999654
No 45
>d2esha1 a.4.5.61 (A:4-117) Hypothetical protein TM0937 {Thermotoga maritima [TaxId: 2336]}
Probab=89.22 E-value=0.13 Score=35.15 Aligned_cols=44 Identities=7% Similarity=-0.041 Sum_probs=32.7
Q ss_pred CCCCchhHHHHHHHHhHhCCceeeC--CCCC-----eeeChhhhhhhhhhh
Q 032124 93 FSKSSGSVARHILHQLQDTNIIELD--SKGQ-----SLVLVERLHKLDCEN 136 (147)
Q Consensus 93 ~~~asgsiiR~~LqqLE~~glV~k~--~~~G-----R~lT~~G~~~LDri~ 136 (147)
....+-+.|=.+|+.||+.|||+.. +.+| -.||++|+..|+...
T Consensus 41 ~~~~~~gtiY~~L~rLe~~G~I~~~~~~~~g~~rk~Y~IT~~G~~~l~~~~ 91 (114)
T d2esha1 41 PGIGHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRITPQGKLYLREIL 91 (114)
T ss_dssp TTCCCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEECHHHHHHHHHHH
T ss_pred cccCCCCcHHHHHHHHHHCCCeEEEeecCCCCCcEEEEECHHHHHHHHHHH
Confidence 3445557789999999999999742 2334 369999999987543
No 46
>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=89.16 E-value=0.38 Score=29.62 Aligned_cols=52 Identities=6% Similarity=-0.068 Sum_probs=40.4
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCc-eeeCCCCCeeeC
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNI-IELDSKGQSLVL 125 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~gl-V~k~~~~GR~lT 125 (147)
.|++-|--.+.+....|...+|-+ ..-||+-++.||+.|+ |+..+..|-+|+
T Consensus 9 ~iL~~L~~~~~~s~~eLa~~l~vS--------------~~ti~r~i~~L~~~G~~I~~~~g~GY~L~ 61 (63)
T d1biaa1 9 KLIALLANGEFHSGEQLGETLGMS--------------RAAINKHIQTLRDWGVDVFTVPGKGYSLP 61 (63)
T ss_dssp HHHHHHTTSSCBCHHHHHHHHTSC--------------HHHHHHHHHHHHHTTCCCEEETTTEEECS
T ss_pred HHHHHHHHCCcCCHHHHHHHHCcC--------------HHHHHHHHHHHHHCCCcEEEeCCCeEEeC
Confidence 466666556778999999998864 4789999999999998 666655577775
No 47
>d1hw1a1 a.4.5.6 (A:5-78) Fatty acid responsive transcription factor FadR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=88.49 E-value=0.14 Score=32.69 Aligned_cols=40 Identities=13% Similarity=0.225 Sum_probs=32.9
Q ss_pred chhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeC
Q 032124 72 GVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVL 125 (147)
Q Consensus 72 GV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT 125 (147)
....|+..||- |..-+|.+|+.|++.|||+..+..|-.++
T Consensus 29 s~~eLa~~~~v--------------Sr~tvr~Al~~L~~~G~i~~~~g~G~~V~ 68 (74)
T d1hw1a1 29 AERELSELIGV--------------TRTTLREVLQRLARDGWLTIQHGKPTKVN 68 (74)
T ss_dssp CHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEETTEEEEEC
T ss_pred cHHHHHHHHCC--------------CHHHHHHHHHHHHHCCcEEEEeCceEEEC
Confidence 56777887775 45899999999999999999887777665
No 48
>d1ylfa1 a.4.5.55 (A:5-142) Hypothetical protein BC1842 {Bacillus cereus [TaxId: 1396]}
Probab=86.43 E-value=1.3 Score=30.14 Aligned_cols=63 Identities=14% Similarity=0.164 Sum_probs=43.5
Q ss_pred HHHHHHHHHHh--CCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC-CCCeeeC--hhhhhhh
Q 032124 58 AASMARKIYLR--GGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS-KGQSLVL--VERLHKL 132 (147)
Q Consensus 58 aASi~RklYl~--g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~-~~GR~lT--~~G~~~L 132 (147)
|-.+|..|..+ .++.+..++...|- +-..+|++|++|.++|+|+... .||-.|. |+--+.+
T Consensus 9 Av~~L~~la~~~~~~vss~~IA~~~~i--------------~~~~l~kil~~L~~aGlv~S~rG~GG~~L~~~p~~ItL~ 74 (138)
T d1ylfa1 9 AVHILSILKNNPSSLCTSDYMAESVNT--------------NPVVIRKIMSYLKQAGFVYVNRGPGGAGLLKDLHEITLL 74 (138)
T ss_dssp HHHHHHHHHHSCGGGCCHHHHHHHHTS--------------CHHHHHHHHHHHHHTTSEEEC---CCEEESSCGGGCBHH
T ss_pred HHHHHHHHHhCCCCcCcHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCeEeecCCCCceecCCHhhcCHH
Confidence 44455556553 36888888887764 3478999999999999998654 3788887 3444455
Q ss_pred hh
Q 032124 133 DC 134 (147)
Q Consensus 133 Dr 134 (147)
|=
T Consensus 75 dI 76 (138)
T d1ylfa1 75 DV 76 (138)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 49
>d2obpa1 a.4.5.71 (A:12-92) Putative DNA-binding protein ReutB4095 {Ralstonia eutropha [TaxId: 106590]}
Probab=85.29 E-value=0.43 Score=31.92 Aligned_cols=36 Identities=25% Similarity=0.341 Sum_probs=28.2
Q ss_pred hhHHHHHHHHhHhCCceee--CCC--CCeeeChhhhhhhh
Q 032124 98 GSVARHILHQLQDTNIIEL--DSK--GQSLVLVERLHKLD 133 (147)
Q Consensus 98 gsiiR~~LqqLE~~glV~k--~~~--~GR~lT~~G~~~LD 133 (147)
=|.+|..|-||+.+|+++. +++ |--.||++|+..-+
T Consensus 38 MS~LRR~LTqL~~aGl~~t~~~edG~G~A~Lt~~G~~lca 77 (81)
T d2obpa1 38 MSVLRRVLTQLQAAGLADVSVEADGRGHASLTQEGAALAA 77 (81)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECTTSCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCceeeeeccCCcceeeccHHHHHHHH
Confidence 3899999999999999984 333 23479999997643
No 50
>d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}
Probab=84.88 E-value=0.97 Score=28.96 Aligned_cols=52 Identities=13% Similarity=0.110 Sum_probs=42.8
Q ss_pred HhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeChhhhhhh
Q 032124 67 LRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVLVERLHKL 132 (147)
Q Consensus 67 l~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~L 132 (147)
-.||..++.|...=| .+...++.+|..|..+|+++.++++--.+|+.|+-+.
T Consensus 31 ~~gp~s~~eLA~~~g--------------~~~~~l~rlLr~l~a~gl~~e~~~~~y~lt~~s~~L~ 82 (85)
T d1tw3a1 31 LAGARTVKALAARTD--------------TRPEALLRLIRHLVAIGLLEEDAPGEFVPTEVGELLA 82 (85)
T ss_dssp HTTCCBHHHHHHHHT--------------CCHHHHHHHHHHHHHTTSEEEEETTEEEECTTGGGGS
T ss_pred ccCCCCHHHHHHHhC--------------cChhHHHHHHHHHHHCCCeEecCCCeEecCHHHHHhh
Confidence 368999999998755 3347899999999999999877667788999998654
No 51
>d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=82.28 E-value=0.77 Score=32.58 Aligned_cols=42 Identities=12% Similarity=0.346 Sum_probs=35.4
Q ss_pred HHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeC
Q 032124 61 MARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELD 117 (147)
Q Consensus 61 i~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~ 117 (147)
|++.| ..+|..|+.|....|-.+ +-+++-|+.||++|+|+..
T Consensus 24 Il~~L-~~~~~s~~ela~~lg~s~--------------~~v~~hl~~L~~~glv~~~ 65 (190)
T d1ulya_ 24 ILKLL-RNKEMTISQLSEILGKTP--------------QTIYHHIEKLKEAGLVEVK 65 (190)
T ss_dssp HHHHH-TTCCBCHHHHHHHHTCCH--------------HHHHHHHHHHHHTTSEEEE
T ss_pred HHHHH-HhCCCCHHHHHHHHCcCH--------------HHHHHHHHHHHHCCCeEEE
Confidence 77766 489999999999987543 7789999999999999754
No 52
>d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=82.02 E-value=1.4 Score=26.84 Aligned_cols=55 Identities=11% Similarity=0.005 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHh-CCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCc-eeeCCCCCeeeCh
Q 032124 57 RAASMARKIYLR-GGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNI-IELDSKGQSLVLV 126 (147)
Q Consensus 57 RaASi~RklYl~-g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~gl-V~k~~~~GR~lT~ 126 (147)
|-..|+..|.-. +++.+..|...+|-+ ..-||.=|+.||+.|+ |+..+ +|-+|.+
T Consensus 8 R~~~Il~~L~~~~~~vs~~~La~~l~VS--------------~~TI~rdi~~L~~~G~~I~~~~-gGY~L~~ 64 (65)
T d1j5ya1 8 RLKSIVRILERSKEPVSGAQLAEELSVS--------------RQVIVQDIAYLRSLGYNIVATP-RGYVLAG 64 (65)
T ss_dssp HHHHHHHHHHHCSSCBCHHHHHHHHTSC--------------HHHHHHHHHHHHHHTCCCEEET-TEEECCT
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHCCC--------------HHHHHHHHHHHHHCCCeEEEeC-CCEEeCC
Confidence 445677777653 689999999998754 4679999999999998 77654 6888764
No 53
>d1olta_ c.1.28.2 (A:) Oxygen-independent coproporphyrinogen III oxidase HemN {Escherichia coli [TaxId: 562]}
Probab=82.00 E-value=0.48 Score=38.66 Aligned_cols=65 Identities=9% Similarity=0.032 Sum_probs=43.9
Q ss_pred HHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeChhhhhhhhhhhc
Q 032124 62 ARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVLVERLHKLDCENS 137 (147)
Q Consensus 62 ~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~LDri~~ 137 (147)
+-.|-...++-...+.+.||-.-. ..| +-....|++|++.|||+.+. ++=+||++|+-++|-|+.
T Consensus 371 i~~L~~~~~ld~~~~~~~fg~~~~-----~~f-----~~~~~~L~~l~~~GLv~~~~-~~l~lT~~Gr~l~~~I~~ 435 (441)
T d1olta_ 371 IKSLICNFRLDYSPIEQQWDLLFA-----DYF-----AEDLKLLAPLAKDGLVDVDE-KGIQVTAKGRLLIRNICM 435 (441)
T ss_dssp HHHHHHHSEEEHHHHHHHTTCCHH-----HHT-----HHHHHHHHHHHHTTSEEECS-SEEEECTTTGGGHHHHHH
T ss_pred HHHHHHhCCcCHHHHHHHHCCCHH-----HHH-----HHHHHHHHHHHHCCCEEEEC-CEEEECHhHHHHHHHHHH
Confidence 333444556666777777664210 011 12235788899999999874 688999999999999985
No 54
>d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=81.81 E-value=1.3 Score=29.72 Aligned_cols=78 Identities=12% Similarity=0.071 Sum_probs=59.9
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCceeeeccCCCCCCCCCCCchhHHhHHHHHHHHHHhC-CCchhhHHHHhcCCCCCCCCC
Q 032124 12 PHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRG-GLGVGSFRRIYGGGKRNGSRP 90 (147)
Q Consensus 12 ~~~fI~~~A~~LK~~gki~~P~W~d~vKTg~~kElaP~~~DW~YiRaASi~RklYl~g-~vGV~~lr~~YGg~krrG~~P 90 (147)
...|++.+++.++.-| +.. -++.|+-.||+.+ |+.+..+...-|-
T Consensus 8 ~~~~~~~~~~~~~~~G-l~~-------------------------~~~~i~~~L~~~~~plt~~ela~~l~v-------- 53 (151)
T d1ku9a_ 8 KKLIIELFSELAKIHG-LNK-------------------------SVGAVYAILYLSDKPLTISDIMEELKI-------- 53 (151)
T ss_dssp HHHHHHHHHHHHHHTT-CCH-------------------------HHHHHHHHHHHCSSCEEHHHHHHHHTC--------
T ss_pred HHHHHHHHHHHHHHcC-CCH-------------------------HHHHHHHHHHhCCCCcCHHHHHHHhCC--------
Confidence 5678888888888876 211 4678899999874 7999999998765
Q ss_pred CCCCCCchhHHHHHHHHhHhCCceeeCCC--CC----eeeChhhh
Q 032124 91 PHFSKSSGSVARHILHQLQDTNIIELDSK--GQ----SLVLVERL 129 (147)
Q Consensus 91 ~h~~~asgsiiR~~LqqLE~~glV~k~~~--~G----R~lT~~G~ 129 (147)
|.+-+-.+|+.||+.|+|.+... .. ..+|++|+
T Consensus 54 ------sk~~vs~~l~~L~~~GlV~r~~~~~drr~~~~~~t~~g~ 92 (151)
T d1ku9a_ 54 ------SKGNVSMSLKKLEELGFVRKVWIKGERKNYYEAVDGFSS 92 (151)
T ss_dssp ------CHHHHHHHHHHHHHTTSEEEECCTTCSSCEEEECCHHHH
T ss_pred ------CcchHHHHHHHHHHCCCEEEEEcCCCCceeEEeCCHHHH
Confidence 34778899999999999986542 22 36788885
No 55
>d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}
Probab=81.29 E-value=1.9 Score=28.15 Aligned_cols=52 Identities=10% Similarity=0.010 Sum_probs=40.5
Q ss_pred hCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCC--eeeChhhhhhhh
Q 032124 68 RGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQ--SLVLVERLHKLD 133 (147)
Q Consensus 68 ~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~G--R~lT~~G~~~LD 133 (147)
.||..+..|...-|. +-..++.+|..|..+|++++++++. -.+|+.|.-+.|
T Consensus 38 ~gp~t~~eLA~~~g~--------------~~~~l~rLlr~L~a~gll~~~~d~~~~~~~t~~g~lL~d 91 (92)
T d1qzza1 38 AGADTLAGLADRTDT--------------HPQALSRLVRHLTVVGVLEGGEKQGRPLRPTRLGMLLAD 91 (92)
T ss_dssp TTCCSHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEECCCC-CCCCEECTTGGGGST
T ss_pred CCCCCHHHHHHHHCc--------------CchHHHHHHHHHHHCCCeeeecCCCceecccHHHHhccC
Confidence 689999999997553 3367999999999999999987654 445888876655
No 56
>d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=80.42 E-value=1.4 Score=27.19 Aligned_cols=47 Identities=15% Similarity=0.185 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeC
Q 032124 57 RAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELD 117 (147)
Q Consensus 57 RaASi~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~ 117 (147)
....|++.|+-+||+.-..|.+.-|= |..-+..++++|++.|||+..
T Consensus 6 N~~~Il~~i~~~g~~sr~eLa~~~gL--------------S~~Tvs~iv~~L~~~glv~e~ 52 (70)
T d1z6ra1 6 NAGAVYRLIDQLGPVSRIDLSRLAQL--------------APASITKIVHEMLEAHLVQEL 52 (70)
T ss_dssp HHHHHHHHHHSSCSCCHHHHHHHTTC--------------CHHHHHHHHHHHHHHTSEEEC
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEee
Confidence 45679999999999999999998664 347789999999999999754
No 57
>d2fnaa1 a.4.5.11 (A:284-356) Hypothetical protein SSO1545, C-terminal domain {Sulfolobus solfataricus [TaxId: 2287]}
Probab=80.21 E-value=0.89 Score=29.62 Aligned_cols=29 Identities=21% Similarity=0.048 Sum_probs=23.3
Q ss_pred chhHHHHHHHHhHhCCceeeCCCCCeeeCh
Q 032124 97 SGSVARHILHQLQDTNIIELDSKGQSLVLV 126 (147)
Q Consensus 97 sgsiiR~~LqqLE~~glV~k~~~~GR~lT~ 126 (147)
+.+.+=.+|++|+++|||+|.. ++-.|+.
T Consensus 37 ~d~~ls~lL~nL~k~~~iek~~-~~Y~i~D 65 (73)
T d2fnaa1 37 SDSEIYNYLTQLTKHSWIIKEG-EKYCPSE 65 (73)
T ss_dssp CHHHHHHHHHHHHHTTSEEESS-SCEEESS
T ss_pred ChHHHHHHHHHHHHcCceeecC-CeeccCc
Confidence 4577889999999999999974 5666663
No 58
>d2p4wa1 a.4.5.64 (A:1-194) Transcriptional regulatory protein PF1790 {Pyrococcus furiosus [TaxId: 2261]}
Probab=78.51 E-value=0.9 Score=32.66 Aligned_cols=58 Identities=14% Similarity=0.117 Sum_probs=42.8
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCC---C-----CeeeChhhhhh
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK---G-----QSLVLVERLHK 131 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~---~-----GR~lT~~G~~~ 131 (147)
.||+.| .+||..+..|....|-. -+-+++=|+.||++|+|+.... . -..||..|+..
T Consensus 19 ~Il~~L-~~~~~~~~ela~~l~~s--------------~~~v~~HL~~L~~~Glv~~~~~~~~~G~~~~~y~l~~~~~~~ 83 (194)
T d2p4wa1 19 RILFLL-TKRPYFVSELSRELGVG--------------QKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGLRLE 83 (194)
T ss_dssp HHHHHH-HHSCEEHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTEEEE
T ss_pred HHHHHH-HhCCCCHHHHHHHHCcC--------------HHHHHHHHHHHHHCCCeEEEEeecCCCCceEEEEecccceee
Confidence 367666 37999999999998743 4788999999999999985432 1 24677776544
Q ss_pred h
Q 032124 132 L 132 (147)
Q Consensus 132 L 132 (147)
+
T Consensus 84 ~ 84 (194)
T d2p4wa1 84 I 84 (194)
T ss_dssp E
T ss_pred e
Confidence 3
No 59
>d2hoea1 a.4.5.63 (A:10-71) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}
Probab=76.67 E-value=0.7 Score=28.27 Aligned_cols=44 Identities=9% Similarity=0.156 Sum_probs=36.2
Q ss_pred HHHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeC
Q 032124 59 ASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELD 117 (147)
Q Consensus 59 ASi~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~ 117 (147)
|.|++.|+ ++|+.-..|++.-|=. ..-+..++..|++.|+|...
T Consensus 2 s~Il~~i~-~~pisr~eLa~~~gls--------------~~TVs~~v~~L~~~GlV~e~ 45 (62)
T d2hoea1 2 SRILKRIM-KSPVSRVELAEELGLT--------------KTTVGEIAKIFLEKGIVVEE 45 (62)
T ss_dssp CCSHHHHH-HSCBCHHHHHHHHTCC--------------HHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHH-HCCcCHHHHHHHHCcC--------------HHHHHHHHHHHHHCCCEEEC
Confidence 45788897 7899999999986653 37889999999999999643
No 60
>d1u2wa1 a.4.5.5 (A:12-119) Cadmium efflux system accessory protein CadC {Staphylococcus aureus [TaxId: 1280]}
Probab=71.38 E-value=3.2 Score=27.55 Aligned_cols=48 Identities=17% Similarity=0.183 Sum_probs=35.9
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCe
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQS 122 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR 122 (147)
.|++.|.-.++..|+.|....|-. .+-+=+=|+.|+.+|||.... .||
T Consensus 35 ~Il~~L~~~~~~~v~ela~~l~~s--------------~s~vS~HL~~L~~aGlv~~~r-~G~ 82 (108)
T d1u2wa1 35 KITYALCQDEELCVCDIANILGVT--------------IANASHHLRTLYKQGVVNFRK-EGK 82 (108)
T ss_dssp HHHHHHHHSSCEEHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEC-----
T ss_pred HHHHHHHhCCCccHHHHHHHHccC--------------hhHHHHHHHHHHHCCeeEEEE-ECC
Confidence 467777777999999999998854 356667789999999998765 454
No 61
>d2ev0a1 a.4.5.24 (A:2-62) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]}
Probab=70.99 E-value=6.6 Score=23.71 Aligned_cols=41 Identities=10% Similarity=0.113 Sum_probs=29.6
Q ss_pred hCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCe
Q 032124 68 RGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQS 122 (147)
Q Consensus 68 ~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR 122 (147)
.+++.+..++...|=++ +=+-..++.|++.|||+..+-+|=
T Consensus 19 ~~~v~~~~iA~~L~vs~--------------~SVs~mikrL~~~GlV~~~~Y~~i 59 (61)
T d2ev0a1 19 KGYARVSDIAEALAVHP--------------SSVTKMVQKLDKDEYLIYEKYRGL 59 (61)
T ss_dssp HSSCCHHHHHHHHTCCH--------------HHHHHHHHHHHHTTSEEC----CC
T ss_pred CCCccHHHHHHHhCCCc--------------hhHHHHHHHHHHCCCEEEccCCCe
Confidence 58899999999886432 446678999999999998776553
No 62
>d1okra_ a.4.5.39 (A:) Methicillin resistance regulatory protein MecI {Staphylococcus aureus [TaxId: 1280]}
Probab=67.95 E-value=1.7 Score=28.83 Aligned_cols=50 Identities=10% Similarity=0.133 Sum_probs=39.5
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCC
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSK 119 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~ 119 (147)
.||+-|+-.||+.+..+.....- .++. +-+-+..+|+-||+-|+|+....
T Consensus 11 ~VM~~lW~~~~~t~~ei~~~l~~--~~~~--------~~sTv~t~L~rL~~Kg~l~r~~~ 60 (120)
T d1okra_ 11 EVMNIIWMKKYASANNIIEEIQM--QKDW--------SPKTIRTLITRLYKKGFIDRKKD 60 (120)
T ss_dssp HHHHHHHHHSSEEHHHHHHHHHH--HCCC--------CHHHHHHHHHHHHHHTSEEEEEE
T ss_pred HHHHHHHcCCCCCHHHHHHHHhc--ccCc--------cHHhHHHHHHHHHHCCCeEEEec
Confidence 48999999999999988877653 2232 33688999999999999987654
No 63
>d1p1xa_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Escherichia coli [TaxId: 562]}
Probab=67.77 E-value=5.2 Score=30.63 Aligned_cols=85 Identities=16% Similarity=0.277 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHHHcCCCCCCCceeeeccCCCCCCCCCCCc-hhHHhHHHHHHHHHHhCCCch------hhH---------
Q 032124 13 HEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPD-WYYIRAASMARKIYLRGGLGV------GSF--------- 76 (147)
Q Consensus 13 ~~fI~~~A~~LK~~gki~~P~W~d~vKTg~~kElaP~~~D-W~YiRaASi~RklYl~g~vGV------~~l--------- 76 (147)
++.+....+-.-+.| +|||||++++--+...++ =-+++. ++|.......+|| ..+
T Consensus 148 ~e~i~~a~~ia~~aG-------adFvKTSTG~~~~gat~~~v~~m~~--~i~~~~~~~~vgIKasGGIrt~~~a~~~i~~ 218 (250)
T d1p1xa_ 148 EALIRKASEISIKAG-------ADFIKTSTGKVAVNATPESARIMME--VIRDMGVEKTVGFKPAGGVRTAEDAQKYLAI 218 (250)
T ss_dssp HHHHHHHHHHHHHTT-------CSEEECCCSCSSCCCCHHHHHHHHH--HHHHHTCTTTCEEECBSSCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-------cCeEEecCCcCCCCCCHHHHHHHHH--HhhhhccCcceeeEecCCCCCHHHHHHHHHH
Confidence 445544445555554 899999999987777663 333322 3344333334544 222
Q ss_pred -HHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhH
Q 032124 77 -RRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQ 109 (147)
Q Consensus 77 -r~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE 109 (147)
....|..- ..|..|+-|+.|.+-.++++|+
T Consensus 219 ga~~iG~~~---~~~~~fRiGaSs~l~~l~~~l~ 249 (250)
T d1p1xa_ 219 ADELFGADW---ADARHYRFGASSLLASLLKALG 249 (250)
T ss_dssp HHHHHCTTS---CSTTTBCEEESTHHHHHHHHHT
T ss_pred HHHHhCccc---cccCceeeeHHHHHHHHHHHhc
Confidence 12234322 4699999999999999999885
No 64
>d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]}
Probab=65.99 E-value=4.4 Score=26.31 Aligned_cols=51 Identities=20% Similarity=0.293 Sum_probs=39.4
Q ss_pred HhHHHHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCee
Q 032124 56 IRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSL 123 (147)
Q Consensus 56 iRaASi~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~ 123 (147)
+| ..|++.| ..+|.-|+.|....|-. .+-+-+=|+.|+++|+|....+ ||.
T Consensus 24 ~R-l~Il~~L-~~~~~~v~ela~~l~is--------------~stvS~HL~~L~~aglV~~~r~-G~~ 74 (98)
T d1r1ta_ 24 NR-LRLLSLL-ARSELCVGDLAQAIGVS--------------ESAVSHQLRSLRNLRLVSYRKQ-GRH 74 (98)
T ss_dssp HH-HHHHHHH-TTCCBCHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEEEE-TTE
T ss_pred HH-HHHHHHH-HcCCcCHHHHHHHHCcC--------------HHHHHHHHHHHHHCCceEEEEE-CCE
Confidence 55 3578777 47899999999988753 3677788999999999987643 443
No 65
>d2esna1 a.4.5.37 (A:3-91) Probable LysR-type transcriptional regulator PA0477 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=64.94 E-value=2.7 Score=26.70 Aligned_cols=36 Identities=14% Similarity=0.060 Sum_probs=29.1
Q ss_pred hHHHHHHHHhHhC---CceeeCCCCCeeeChhhhhhhhhh
Q 032124 99 SVARHILHQLQDT---NIIELDSKGQSLVLVERLHKLDCE 135 (147)
Q Consensus 99 siiR~~LqqLE~~---glV~k~~~~GR~lT~~G~~~LDri 135 (147)
+-+-+.|++||+. .|+... .+|-.+|+.|+..++.+
T Consensus 35 ~avs~~l~~lE~~~g~~Lf~R~-~~~~~lT~~g~~l~~~~ 73 (89)
T d2esna1 35 SAFSHALGRLRQGLDDELFLRQ-GNRMQPTQRAEHLAAAV 73 (89)
T ss_dssp HHHHHHHHHHHHHHTSCCEEEE-TTEEEECHHHHHHHHHH
T ss_pred cHhhHHHHHHHhcCCceeEEEC-CCceeECHHHHHHHHHH
Confidence 5677888888874 788876 47899999999988765
No 66
>d1p6ra_ a.4.5.39 (A:) Penicillinase repressor BlaI {Bacillus licheniformis [TaxId: 1402]}
Probab=60.18 E-value=4.3 Score=25.76 Aligned_cols=52 Identities=8% Similarity=0.096 Sum_probs=41.1
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCe
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQS 122 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR 122 (147)
.|++-|.-.||+.+..+.......+ +. +-+-++..|+-|++-|+|+... .||
T Consensus 13 ~IM~~lW~~~~~t~~ei~~~l~~~~--~~--------~~tTv~T~L~rL~~KG~l~~~k-~gr 64 (82)
T d1p6ra_ 13 EVMKVIWKHSSINTNEVIKELSKTS--TW--------SPKTIQTMLLRLIKKGALNHHK-EGR 64 (82)
T ss_dssp HHHHHHHTSSSEEHHHHHHHHHHHS--CC--------CHHHHHHHHHHHHHTTSEEEEE-ETT
T ss_pred HHHHHHHhCCCCCHHHHHHHhcccc--CC--------cHhHHHHHHHHHHHCCCeEEEe-cCC
Confidence 5899999999999999988876532 22 2378999999999999998764 344
No 67
>d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]}
Probab=58.76 E-value=2.8 Score=25.71 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=28.7
Q ss_pred CCCCchhHHHHHHHHhHhCCceeeCCCCCeeeChhhhhhhhhhhcCC
Q 032124 93 FSKSSGSVARHILHQLQDTNIIELDSKGQSLVLVERLHKLDCENSNG 139 (147)
Q Consensus 93 ~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~LDri~~~~ 139 (147)
....|..-+=.+|++|++.|+|+... + .++=.=...|-++|+.|
T Consensus 38 ~~G~sretvsr~L~~l~~~glI~~~~--~-~i~I~d~~~L~~~a~~g 81 (81)
T d2gaua1 38 LSNMTVSNAIRTLSTFVSERMLALDG--K-RIKIIDCDRLQKTARSG 81 (81)
T ss_dssp HTTSCHHHHHHHHHHHHHTTSEEEET--T-EEEESCHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHHHHHHCCCEEecC--C-EEEEcCHHHHHHHHhcC
Confidence 34566777888999999999999753 2 33322234455555543
No 68
>d2g9wa1 a.4.5.39 (A:3-124) Hypothetical protein Rv1846c {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=58.21 E-value=8.3 Score=25.57 Aligned_cols=53 Identities=9% Similarity=0.127 Sum_probs=40.0
Q ss_pred HHHHHHHHHhC-CCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCe
Q 032124 59 ASMARKIYLRG-GLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQS 122 (147)
Q Consensus 59 ASi~RklYl~g-~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR 122 (147)
..|++-|+-.| |+.+..+....... ++. +-+-++..|.-|++-|+|+.... ||
T Consensus 10 ~~IM~~lW~~g~~~t~~eI~~~l~~~--~~~--------~~sTV~T~L~rL~~Kg~l~~~~~-gr 63 (122)
T d2g9wa1 10 RAVMDHLWSRTEPQTVRQVHEALSAR--RDL--------AYTTVMAVLQRLAKKNLVLQIRD-DR 63 (122)
T ss_dssp HHHHHHHHTCSSCEEHHHHHHHHTTT--CCC--------CHHHHHHHHHHHHHTTSEEEEC----
T ss_pred HHHHHHHHcCCCCccHHHHHHHHhcc--CCC--------cHHHHHHHHHHHHHCCCEEEeec-CC
Confidence 45889999876 78999999988653 222 23789999999999999998754 44
No 69
>d2nyga1 c.140.1.2 (A:2-271) Uncharacterized protein YokD {Bacillus subtilis [TaxId: 1423]}
Probab=55.43 E-value=1.4 Score=34.13 Aligned_cols=95 Identities=17% Similarity=0.282 Sum_probs=62.3
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCce-eeeccCCCCCCCCCCCchh-HHhHHHHHHHHHHhCC-CchhhHHHHhcCCCC--C
Q 032124 12 PHEFVKAYAAHLKRSGKIELPTWN-DIVKTGTLKELAPYDPDWY-YIRAASMARKIYLRGG-LGVGSFRRIYGGGKR--N 86 (147)
Q Consensus 12 ~~~fI~~~A~~LK~~gki~~P~W~-d~vKTg~~kElaP~~~DW~-YiRaASi~RklYl~g~-vGV~~lr~~YGg~kr--r 86 (147)
++.+|++|-+.+=++|-|-+|.+. ++.++... +.||..++|| .+|...-+=.....+. .|+|.|...+=..+. |
T Consensus 48 ~~~~i~aL~~~vG~~GTLvmPtft~~~~~~~~~-~~~~~~~~~~~~~r~~~p~Fd~~~tps~~~mG~l~e~~r~~~~~~R 126 (270)
T d2nyga1 48 AVAVIQALIDVVTEEGTIVMPSQSVELSDPKEW-GNPPVPEEWWDIIRESMPAYNSNYTPTTRGMGQIVELFRSYPEVKR 126 (270)
T ss_dssp HHHHHHHHHHHHTTTSEEEEECCCTTSSCGGGC-CSSCCCGGGTTHHHHSCCCCCTTTCCCCGGGCHHHHHHTTSTTCEE
T ss_pred HHHHHHHHHHHhCCCceEEEEecccCCCChhhh-cCCCCcHHHHHHHHhcCCCcCcccCccccccChHHHHHHHCCCCee
Confidence 789999999999999999999987 55555544 4466666655 4444211100111122 368888888765432 4
Q ss_pred CCCCCCCCCCchhHHHHHHHH
Q 032124 87 GSRPPHFSKSSGSVARHILHQ 107 (147)
Q Consensus 87 G~~P~h~~~asgsiiR~~Lqq 107 (147)
...|-|..-+-|.-...+++.
T Consensus 127 S~hP~~S~~~~G~~a~~i~~~ 147 (270)
T d2nyga1 127 SNHPNYSFVAWGKHKNKILNQ 147 (270)
T ss_dssp CSCSSSCEEEEETTHHHHHSC
T ss_pred cCCCCeeEEEecccHHHHhcC
Confidence 456888888888877776654
No 70
>d1oywa1 a.4.5.43 (A:407-516) DNA helicase RecQ DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=53.50 E-value=5.9 Score=26.09 Aligned_cols=75 Identities=12% Similarity=0.091 Sum_probs=53.1
Q ss_pred HHHHHHH-hCCCchhhHHHHhcCCCCCCC------CCCCCCC---CchhHHHHHHHHhHhCCceeeCCC--CCeeeChhh
Q 032124 61 MARKIYL-RGGLGVGSFRRIYGGGKRNGS------RPPHFSK---SSGSVARHILHQLQDTNIIELDSK--GQSLVLVER 128 (147)
Q Consensus 61 i~RklYl-~g~vGV~~lr~~YGg~krrG~------~P~h~~~---asgsiiR~~LqqLE~~glV~k~~~--~GR~lT~~G 128 (147)
||..++- .+..|++.+..++-|+++.-+ +-+-|-. -|-.-++.++.||...|+++++.. +-=.||++|
T Consensus 13 iLs~V~~~~~rfg~~~ivdiL~Gs~~~kI~~~~h~~l~~yG~gk~~~~~~w~~li~qLv~~g~L~~~~~~y~~l~lt~~g 92 (110)
T d1oywa1 13 ALSTIGRVNQRFGMGYVVEVIRGANNQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNIAQHSALQLTEAA 92 (110)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHTCCCHHHHHHTGGGSTTTTTTTTSCHHHHHHHHHHHHHTTSEEEEGGGTTEEEECGGG
T ss_pred HHHHHHHhcCccCcceehhhHhcCccHHHHHhCCCcCCcccCcCCCCHHHHHHHHHHHHHcCCceeccCcCCeEEECHHH
Confidence 4555554 578999999999888776532 1112222 245689999999999999987642 355799999
Q ss_pred hhhhhhh
Q 032124 129 LHKLDCE 135 (147)
Q Consensus 129 ~~~LDri 135 (147)
+..|...
T Consensus 93 ~~~l~g~ 99 (110)
T d1oywa1 93 RPVLRGE 99 (110)
T ss_dssp HHHHHTS
T ss_pred HHHhCCC
Confidence 9988643
No 71
>d1r1ua_ a.4.5.5 (A:) Metal-sensing transcriptional repressor CzrA {Staphylococcus aureus [TaxId: 1280]}
Probab=53.20 E-value=11 Score=24.12 Aligned_cols=50 Identities=14% Similarity=0.164 Sum_probs=37.7
Q ss_pred HhHHHHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCe
Q 032124 56 IRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQS 122 (147)
Q Consensus 56 iRaASi~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR 122 (147)
+| -.|++.| ..+|..|+.|....|-.+ +.+-+=|+.|+++|+|.... .||
T Consensus 19 ~R-l~Il~~L-~~~~~~v~el~~~l~~s~--------------~~vS~HL~~L~~~glv~~~r-~G~ 68 (94)
T d1r1ua_ 19 NR-IRIMELL-SVSEASVGHISHQLNLSQ--------------SNVSHQLKLLKSVHLVKAKR-QGQ 68 (94)
T ss_dssp HH-HHHHHHH-HHCCBCHHHHHHHHTCCH--------------HHHHHHHHHHHHTTSEEEEE-ETT
T ss_pred HH-HHHHHHH-HcCCccHHHHHHHHCCCH--------------HHHHHHHHHHHHCCceEEEE-ECC
Confidence 45 3477655 479999999999987543 66777899999999998764 354
No 72
>d2v0fa1 d.76.2.1 (A:2629-2715) Chromodomain-helicase-DNA-binding protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=50.11 E-value=0.68 Score=31.22 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=21.7
Q ss_pred HHHHHHHHHHc-CCCCCCCceeeeccC
Q 032124 16 VKAYAAHLKRS-GKIELPTWNDIVKTG 41 (147)
Q Consensus 16 I~~~A~~LK~~-gki~~P~W~d~vKTg 41 (147)
.+.|+++|+.+ +--..|+|+++||+.
T Consensus 38 ~~~L~~WL~~nP~y~V~P~w~~~vk~~ 64 (87)
T d2v0fa1 38 MKDLPRWLEENPEFAVAPDWTDIVKQS 64 (87)
T ss_dssp GGGHHHHHHHCTTEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCceeCccHHHHHhhc
Confidence 35689999999 667789999999974
No 73
>d1sd4a_ a.4.5.39 (A:) Penicillinase repressor BlaI {Staphylococcus aureus [TaxId: 1280]}
Probab=47.89 E-value=13 Score=24.71 Aligned_cols=52 Identities=13% Similarity=0.139 Sum_probs=41.3
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCe
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQS 122 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR 122 (147)
.|++-|+-.||+.+..+....+..+ +. +-+-++..|+-|++-|+|.... .||
T Consensus 10 ~VM~~lW~~~~~t~~ei~~~l~~~~--~~--------~~tTv~T~L~rL~~Kg~l~~~~-~gr 61 (122)
T d1sd4a_ 10 DVMNIIWDKKSVSANEIVVEIQKYK--EV--------SDKTIRTLITRLYKKEIIKRYK-SEN 61 (122)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHTTS--CC--------CHHHHHHHHHHHHHTTSEEEEE-ETT
T ss_pred HHHHHHHcCCCCCHHHHHHHhhccC--CC--------cHhHHHHHHHHHHhhhceeeec-cCC
Confidence 5889999999999999998886432 22 3478999999999999998654 344
No 74
>d1ixca1 a.4.5.37 (A:1-89) LysR-type regulatory protein CbnR {Ralstonia eutropha [TaxId: 106590]}
Probab=47.81 E-value=5.6 Score=25.16 Aligned_cols=36 Identities=8% Similarity=0.013 Sum_probs=24.4
Q ss_pred hHHHHHHHHhHhC---CceeeCCCCCeeeChhhhhhhhhh
Q 032124 99 SVARHILHQLQDT---NIIELDSKGQSLVLVERLHKLDCE 135 (147)
Q Consensus 99 siiR~~LqqLE~~---glV~k~~~~GR~lT~~G~~~LDri 135 (147)
+-+-+.|++||+. .|++... +|-.+|+.|+..+..+
T Consensus 30 ~avs~~i~~LE~~lg~~Lf~R~~-~~~~lT~~G~~l~~~a 68 (89)
T d1ixca1 30 PPITRQMQALEADLGVVLLERSH-RGIELTAAGHAFLEDA 68 (89)
T ss_dssp HHHHHHHHHHHHHHTSCCBC------CCBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCceeeEecC-CccCccHhHHHHHHHH
Confidence 5677888899864 7777764 6889999999887543
No 75
>d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=46.62 E-value=7 Score=23.33 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=19.3
Q ss_pred CCCchhHHHHHHHHhHhCCceeeC
Q 032124 94 SKSSGSVARHILHQLQDTNIIELD 117 (147)
Q Consensus 94 ~~asgsiiR~~LqqLE~~glV~k~ 117 (147)
...|..-+=++|++||+.|+|+..
T Consensus 39 ~G~sRetvsr~L~~l~~~glI~~~ 62 (69)
T d1i5za1 39 VGCSRETVGRILKMLEDQNLISAH 62 (69)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HCCCHHHHHHHHHHHHHCCCEEEc
Confidence 345566777899999999999875
No 76
>d1b9ma1 a.4.5.8 (A:-1-126) N-terminal domain of molybdate-dependent transcriptional regulator ModE {Escherichia coli [TaxId: 562]}
Probab=43.56 E-value=9.3 Score=25.00 Aligned_cols=36 Identities=8% Similarity=0.144 Sum_probs=24.4
Q ss_pred hHHHHHHHHhHhC---CceeeCCC----CCeeeChhhhhhhhh
Q 032124 99 SVARHILHQLQDT---NIIELDSK----GQSLVLVERLHKLDC 134 (147)
Q Consensus 99 siiR~~LqqLE~~---glV~k~~~----~GR~lT~~G~~~LDr 134 (147)
+-+=+.+++||+. .|++..+. .|-.||+.|++.+..
T Consensus 47 ~avs~~i~~lE~~lg~~Lf~R~~~g~~~~~~~LT~~G~~ll~~ 89 (127)
T d1b9ma1 47 KSAWDAINEMNQLSEHILVERATGGKGGGGAVLTRYGQRLIQL 89 (127)
T ss_dssp HHHHHHHHHHHHHHTSCCEEECCCC-----EEECHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCeEEEeecCCccccchhhhHHHHHHHHH
Confidence 3344567778764 67887642 246899999998874
No 77
>d2p6ra1 a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=42.36 E-value=13 Score=23.14 Aligned_cols=31 Identities=6% Similarity=-0.042 Sum_probs=24.7
Q ss_pred hhHHHHHHHHhHhCCceeeCCCCCeeeChhhhh
Q 032124 98 GSVARHILHQLQDTNIIELDSKGQSLVLVERLH 130 (147)
Q Consensus 98 gsiiR~~LqqLE~~glV~k~~~~GR~lT~~G~~ 130 (147)
-..|..+|..|++.|+|+.+ +.-.-|+-|+-
T Consensus 49 ~~~i~~~l~~L~~~~~I~~~--~~l~aT~lGri 79 (85)
T d2p6ra1 49 SYELERVVRQLENWGMVVEA--AHLAPTKLGSL 79 (85)
T ss_dssp HHHHHHHHHHHHHTTSEEES--SSEEECHHHHH
T ss_pred HHHHHHHHHHHHHCCCcccc--cccccCHHHHH
Confidence 36789999999999999875 34677877763
No 78
>d1zara1 a.4.5.56 (A:2-90) Rio2 serine protein kinase N-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=41.94 E-value=11 Score=24.77 Aligned_cols=37 Identities=24% Similarity=0.213 Sum_probs=28.8
Q ss_pred CchhHHHHHHHHhHhCCceeeCCC--CCeeeChhhhhhh
Q 032124 96 SSGSVARHILHQLQDTNIIELDSK--GQSLVLVERLHKL 132 (147)
Q Consensus 96 asgsiiR~~LqqLE~~glV~k~~~--~GR~lT~~G~~~L 132 (147)
-+.+=+.++|+.|-+.++|..... .|-+||-.|-..|
T Consensus 41 l~~~~~~~~L~~L~k~kLv~~~~~~Y~GYrLT~~GYD~L 79 (89)
T d1zara1 41 IGEEKARNILKYLSDLRVVQNRQKDYEGSTFTFIGLSLY 79 (89)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEECSSSCEEEECHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCeeccCCCcceEEeeccChHHH
Confidence 344557789999999999986543 5999999986544
No 79
>d2b0la1 a.4.5.66 (A:167-257) GTP-sensing transcriptional pleiotropic repressor CodY, C-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=40.76 E-value=8 Score=25.80 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=18.7
Q ss_pred hhHHHHHHHHhHhCCceeeCC
Q 032124 98 GSVARHILHQLQDTNIIELDS 118 (147)
Q Consensus 98 gsiiR~~LqqLE~~glV~k~~ 118 (147)
.|||=.+|..||.+|++|...
T Consensus 48 RSVIVNALRK~ESAGvIEsrS 68 (91)
T d2b0la1 48 RSVIVNALRKLESAGVIESRS 68 (91)
T ss_dssp HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHhhhcceeeecc
Confidence 489999999999999999654
No 80
>d1lvaa4 a.4.5.35 (A:575-634) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=40.26 E-value=35 Score=20.64 Aligned_cols=53 Identities=17% Similarity=0.251 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeee
Q 032124 57 RAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLV 124 (147)
Q Consensus 57 RaASi~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~l 124 (147)
.++.+++++--.|++.|..++...|- |.+.+=-+|.-|...|+..+. +..|+|
T Consensus 5 e~~~~i~~l~~~g~~~v~~frd~~g~--------------sRK~ai~lLE~~D~~~~T~R~-gd~Rvl 57 (60)
T d1lvaa4 5 EAREVIKNLASTGPFGLAEARDALGS--------------SRKYVLPLLEYLDQVKFTRRV-GDKRVV 57 (60)
T ss_dssp HHHHHHHHHHTTSCBCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEE-TTEEEE
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHCc--------------cHHHHHHHHHHHhhcCCeEee-CCEEEe
Confidence 45678888777899999999999875 346777788899999999876 356665
No 81
>d2dk5a1 a.4.5.85 (A:8-85) DNA-directed RNA polymerase III subunit RPC6, RPO3F {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.88 E-value=8.3 Score=24.88 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=18.2
Q ss_pred hhHHHHHHHHhHhCCceeeCC
Q 032124 98 GSVARHILHQLQDTNIIELDS 118 (147)
Q Consensus 98 gsiiR~~LqqLE~~glV~k~~ 118 (147)
-+++.+||++||.-++|.-..
T Consensus 43 ~~~l~K~LK~Lesk~lIK~Vk 63 (78)
T d2dk5a1 43 LTEINKILKNLESKKLIKAVK 63 (78)
T ss_dssp HHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHHHhcCCceeec
Confidence 389999999999999997553
No 82
>d2isya1 a.4.5.24 (A:2-64) Iron-dependent regulator IdeR {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=38.67 E-value=36 Score=20.32 Aligned_cols=40 Identities=0% Similarity=0.000 Sum_probs=30.1
Q ss_pred hCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCC
Q 032124 68 RGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQ 121 (147)
Q Consensus 68 ~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~G 121 (147)
.+++.+..++...|-+ | +=+=..++.|++.|||+..+.++
T Consensus 21 ~~~v~~~~iA~~L~vs------~--------~SVt~mvkrL~~~Glv~~~~y~~ 60 (63)
T d2isya1 21 GVTPLRARIAERLDQS------G--------PTVSQTVSRMERDGLLRVAGDRH 60 (63)
T ss_dssp TCCCCHHHHHHHHTCC------H--------HHHHHHHHHHHHTTSEEECTTSC
T ss_pred CCCCcHHHHHHHhCCC------c--------hhHHHHHHHHHHCCCEEEcCCCc
Confidence 4788889999887643 2 33456899999999999876543
No 83
>d1bjaa_ a.4.5.9 (A:) Transcription factor MotA, activation domain {Bacteriophage T4 [TaxId: 10665]}
Probab=38.51 E-value=49 Score=21.84 Aligned_cols=64 Identities=11% Similarity=0.140 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCCCCCeeeChhhhhhhhh
Q 032124 57 RAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGQSLVLVERLHKLDC 134 (147)
Q Consensus 57 RaASi~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~LDr 134 (147)
.+|||+-++..+.=+.+...|.. +..-+-++.-+=+--|-+-|||||.- +|-+.|.+|+..+-.
T Consensus 17 kta~I~i~iaKk~FiTa~ev~e~-------------~~~~~~avvnSNIGVliKKgliEKSG-DG~v~T~e~~~il~~ 80 (95)
T d1bjaa_ 17 KTATILITIAKKDFITAAEVREV-------------HPDLGNAVVNSNIGVLIKKGLVEKSG-DGLIITGEAQDIISN 80 (95)
T ss_dssp HHHHHHHHHHHSTTBCHHHHHHT-------------CTTSCHHHHHHHHHHHHTTTSEEEET-TEEEECHHHHHHHHH
T ss_pred hhhHHHHHHHHhhchhHHHHHHH-------------hHHhccceeecceeeeeecchhhccC-CceEeeccHHHHHHH
Confidence 57888888888777777776651 12233467767777899999999984 699999999876644
No 84
>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=38.22 E-value=20 Score=20.73 Aligned_cols=43 Identities=14% Similarity=0.259 Sum_probs=35.5
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceee
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIEL 116 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k 116 (147)
.|++.|=-++...+..+.+..|- |.+.+..-++.||+.|+|..
T Consensus 7 ~Il~~L~~n~r~s~~eiA~~l~l--------------s~~~v~~Ri~~L~~~giI~~ 49 (60)
T d2cyya1 7 KIIKILQNDGKAPLREISKITGL--------------AESTIHERIRKLRESGVIKK 49 (60)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHCS--------------CHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCeEe
Confidence 46777777888999999988653 56889999999999999974
No 85
>d2b8ua1 a.26.1.2 (A:1-129) Interleukin-4 (IL-4) {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.88 E-value=4 Score=29.03 Aligned_cols=54 Identities=24% Similarity=0.331 Sum_probs=36.3
Q ss_pred ccChhHHHHHHHHHHHHc----CCCCCCCceeeeccCCCCCCCCCCCchhHHhHHHHHHHHHHhCCC
Q 032124 9 DVSPHEFVKAYAAHLKRS----GKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGL 71 (147)
Q Consensus 9 DV~~~~fI~~~A~~LK~~----gki~~P~W~d~vKTg~~kElaP~~~DW~YiRaASi~RklYl~g~v 71 (147)
|++=.|.|+.|- .|-+. -++.||+=..--|..+-+| .+-|||.+||++|..-.+
T Consensus 4 di~L~EIIktLN-~lT~~~t~C~el~V~Dvfaa~KNTtEkE--------~~CrAatvLr~~y~~H~~ 61 (129)
T d2b8ua1 4 DITLQEIIKTLN-SLTEQKTLCTELTVTDIFAASKNTTEKE--------TFCRAATVLRQFYSHHEK 61 (129)
T ss_dssp CTHHHHHHHHHH-HHTTCCCTGGGSEEECGGGSCCCCCHHH--------HHHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHH-HHhccCCcceeeehhhhhccCCCCcchh--------HhhHHHHHHHHHHHhccc
Confidence 677788888874 44332 2355555444446655555 489999999999997654
No 86
>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}
Probab=33.61 E-value=32 Score=20.03 Aligned_cols=43 Identities=9% Similarity=0.165 Sum_probs=35.5
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceee
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIEL 116 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k 116 (147)
.|++.|--++...+..|.+.-| -|.+.++.-++.||+.|+|..
T Consensus 9 ~IL~~L~~~~r~s~~eiA~~l~--------------ls~~~v~~Ri~rL~~~GiI~~ 51 (63)
T d2cg4a1 9 GILEALMGNARTAYAELAKQFG--------------VSPETIHVRVEKMKQAGIITG 51 (63)
T ss_dssp HHHHHHHHCTTSCHHHHHHHHT--------------SCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCCeEe
Confidence 4777788888888888888765 356899999999999999974
No 87
>d1i39a_ c.55.3.1 (A:) Class II ribonuclease H (RNase HII) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=32.52 E-value=24 Score=24.61 Aligned_cols=54 Identities=17% Similarity=0.217 Sum_probs=38.6
Q ss_pred CchhHHhHHHHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCce
Q 032124 51 PDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNII 114 (147)
Q Consensus 51 ~DW~YiRaASi~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV 114 (147)
..-.=|=||||+-|+|-.-- +..|...|+.- -+..+++...|..|+++.+-+-.
T Consensus 130 ~~~~~VAAASIiAKv~RD~~--m~~l~~~~p~y--------G~gy~s~~~t~~~l~~~~~~~~~ 183 (200)
T d1i39a_ 130 EKYPLVAAASIIAKVERERE--IERLKEKFGDF--------GSGYASDPRTREVLKEWIASGRI 183 (200)
T ss_dssp GTCHHHHHHHHHHHHHHHHH--HHHHHHHHCCC--------CSSSTTSHHHHHHHHHHHHHTCC
T ss_pred cccccccHHHHHHHHHHHHH--HHHHHHHCCcC--------CCcCCCcHHHHHHHHHHHhcCCC
Confidence 34555899999999997643 57888888731 24456777888888887665543
No 88
>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=31.79 E-value=28 Score=20.27 Aligned_cols=43 Identities=16% Similarity=0.168 Sum_probs=34.8
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceee
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIEL 116 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k 116 (147)
.|++.|--++...+..|.+.-| -|.+.++.-++.||+.|+|..
T Consensus 7 kIl~~L~~n~r~s~~~lA~~~g--------------ls~~~v~~Ri~~L~~~giI~~ 49 (60)
T d1i1ga1 7 IILEILEKDARTPFTEIAKKLG--------------ISETAVRKRVKALEEKGIIEG 49 (60)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHT--------------SCHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCCeEe
Confidence 3667777788888888888755 356899999999999999964
No 89
>d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex aeolicus [TaxId: 63363]}
Probab=30.41 E-value=14 Score=27.66 Aligned_cols=29 Identities=21% Similarity=0.080 Sum_probs=18.6
Q ss_pred HHHHHHHHHHcCCCCCCCceeeeccCCCCCCCCCCC
Q 032124 16 VKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDP 51 (147)
Q Consensus 16 I~~~A~~LK~~gki~~P~W~d~vKTg~~kElaP~~~ 51 (147)
|...++-..+.| +|||||++++.-.+-.+
T Consensus 134 i~~a~~~a~~aG-------adfiKTSTG~~~~gat~ 162 (225)
T d1mzha_ 134 IKKAVEICIEAG-------ADFIKTSTGFAPRGTTL 162 (225)
T ss_dssp HHHHHHHHHHHT-------CSEEECCCSCSSSCCCH
T ss_pred HHHHHHHHHHcc-------cceEeecCCCCCCCCCH
Confidence 444445555544 89999999986554443
No 90
>d1nd9a_ a.6.1.6 (A:) N-terminal subdomain of bacterial translation initiation factor IF2 {Escherichia coli [TaxId: 562]}
Probab=28.85 E-value=14 Score=21.84 Aligned_cols=28 Identities=14% Similarity=0.237 Sum_probs=19.7
Q ss_pred HHHHHHHhHhCCceeeCCCCCeeeChhhhhh
Q 032124 101 ARHILHQLQDTNIIELDSKGQSLVLVERLHK 131 (147)
Q Consensus 101 iR~~LqqLE~~glV~k~~~~GR~lT~~G~~~ 131 (147)
+=..|+||.++|+- |.+. -.||.+-+.-
T Consensus 16 vd~Ll~Ql~~AGl~-ks~~--D~vt~~eK~~ 43 (49)
T d1nd9a_ 16 VERLVQQFADAGIR-KSAD--DSVSAQEKQT 43 (49)
T ss_dssp HHHHHHHHHHHTSC-CSSS--SCEETTGGGH
T ss_pred HHHHHHHHHHcCCC-CCCC--CccCHHHHHH
Confidence 34689999999994 6553 3678765543
No 91
>d1q1ha_ a.4.5.41 (A:) Transcription factor E/IIe-alpha, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=28.51 E-value=13 Score=24.48 Aligned_cols=42 Identities=10% Similarity=0.090 Sum_probs=31.2
Q ss_pred HHHHHHHHh-CCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCcee
Q 032124 60 SMARKIYLR-GGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIE 115 (147)
Q Consensus 60 Si~RklYl~-g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~ 115 (147)
.|++.|+=+ +-+.=..++..-|-+ + +.+|++|..|-..|||.
T Consensus 22 ~v~~~L~~~~~evtDe~iA~~tgi~------i--------n~VRk~Ly~L~~~~L~~ 64 (88)
T d1q1ha_ 22 DVLRILLDKGTEMTDEEIANQLNIK------V--------NDVRKKLNLLEEQGFVS 64 (88)
T ss_dssp HHHHHHHHHCSCBCHHHHHHTTTSC------H--------HHHHHHHHHHHHHTSCE
T ss_pred HHHHHHHhccCcCCHHHHHHHhCCc------H--------HHHHHHHHHHHhCCceE
Confidence 477777744 467777777754433 3 68999999999999995
No 92
>d2a4aa1 c.1.10.1 (A:3-258) Fructose-1,6-bisphosphate aldolase {Plasmodium yoelii yoelii [TaxId: 73239]}
Probab=27.34 E-value=25 Score=26.64 Aligned_cols=17 Identities=35% Similarity=0.317 Sum_probs=14.1
Q ss_pred eeeeccCCCCCCCCCCC
Q 032124 35 NDIVKTGTLKELAPYDP 51 (147)
Q Consensus 35 ~d~vKTg~~kElaP~~~ 51 (147)
+|||||++++--+.-.+
T Consensus 165 adFVKTSTG~~~~gat~ 181 (256)
T d2a4aa1 165 ADFIKTSTGKVQINATP 181 (256)
T ss_dssp CSEEECCCSCSSCCCCH
T ss_pred cHHHHhccCCCCCCCCH
Confidence 89999999988766665
No 93
>d1uaxa_ c.55.3.1 (A:) Class II ribonuclease H (RNase HII) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=25.80 E-value=62 Score=22.74 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=16.3
Q ss_pred hhHHhHHHHHHHHHHhCCCchhhHHHHh
Q 032124 53 WYYIRAASMARKIYLRGGLGVGSFRRIY 80 (147)
Q Consensus 53 W~YiRaASi~RklYl~g~vGV~~lr~~Y 80 (147)
-.-|-||||+=|++-..- +..|...|
T Consensus 138 ~~~VAAASIiAKv~RD~~--m~~l~~~~ 163 (211)
T d1uaxa_ 138 YEIVSAASIIAKVTRDRE--IEKLKQKY 163 (211)
T ss_dssp CHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred cccchHHHHHHHHHHHHH--HHHHHHHC
Confidence 445999999988776532 24444444
No 94
>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}
Probab=25.22 E-value=61 Score=18.78 Aligned_cols=43 Identities=16% Similarity=0.153 Sum_probs=34.9
Q ss_pred HHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceee
Q 032124 60 SMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIEL 116 (147)
Q Consensus 60 Si~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k 116 (147)
.|+..|=-++......+.+.-|- |.+-++.-++.||+.|++..
T Consensus 9 ~IL~~L~~n~r~s~~~iA~~lgi--------------s~~tv~~Ri~~L~~~giI~~ 51 (63)
T d2cfxa1 9 NIIEELKKDSRLSMRELGRKIKL--------------SPPSVTERVRQLESFGIIKQ 51 (63)
T ss_dssp HHHHHHHHCSCCCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCeee
Confidence 36666777888999999998763 45788999999999999964
No 95
>d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]}
Probab=24.74 E-value=46 Score=24.64 Aligned_cols=29 Identities=34% Similarity=0.345 Sum_probs=19.9
Q ss_pred HHHHHHHHHHcCCCCCCCceeeeccCCCCCCCCCCC
Q 032124 16 VKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDP 51 (147)
Q Consensus 16 I~~~A~~LK~~gki~~P~W~d~vKTg~~kElaP~~~ 51 (147)
|...++-..+.| +|||||++++.-++-.+
T Consensus 150 i~~a~~~a~~aG-------adFVKTSTG~~~~gat~ 178 (234)
T d1n7ka_ 150 LSLLVDSSRRAG-------ADIVKTSTGVYTKGGDP 178 (234)
T ss_dssp HHHHHHHHHHTT-------CSEEESCCSSSCCCCSH
T ss_pred HHHHHHHHHHhh-------hhheeecccccCCCCCH
Confidence 444555555554 89999999987665554
No 96
>d1o57a1 a.4.5.40 (A:2-74) N-terminal domain of Bacillus PurR {Bacillus subtilis [TaxId: 1423]}
Probab=24.73 E-value=37 Score=21.57 Aligned_cols=58 Identities=14% Similarity=0.141 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHhC--CCchhhHHHHhcCCCCCCCCCCCCCCCch----hHHHHHHHHhHhCCceeeCCC--CCeeeCh
Q 032124 57 RAASMARKIYLRG--GLGVGSFRRIYGGGKRNGSRPPHFSKSSG----SVARHILHQLQDTNIIELDSK--GQSLVLV 126 (147)
Q Consensus 57 RaASi~RklYl~g--~vGV~~lr~~YGg~krrG~~P~h~~~asg----siiR~~LqqLE~~glV~k~~~--~GR~lT~ 126 (147)
|...|.+.|--++ -+.+..|+..|+..| +|= .||+.+||+. .+|.||..+. ||=+..|
T Consensus 7 Rlv~mt~~L~~~P~~li~L~~F~e~~~~AK-----------SsISEDl~iik~~~~~~-~~G~leTi~GAaGGv~yiP 72 (73)
T d1o57a1 7 RLVDLTNYLLTHPHELIPLTFFSERYESAK-----------SSISEDLTIIKQTFEQQ-GIGTLLTVPGAAGGVKYIP 72 (73)
T ss_dssp HHHHHHHHHHTSTTCCBCHHHHHHHTTCCH-----------HHHHHHHHHHHHHHHHT-TSEEEEEECSTTCEEEEEE
T ss_pred HHHHHHHHHHhCCCceEcHHHHHHHhchhh-----------chhhhHHHHHHHHHHHc-CCCeEEEecCCCCCeeeCC
Confidence 5555555555543 589999999999865 222 3889998874 6888887763 5555444
No 97
>d1awda_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Chlorella fusca [TaxId: 3073]}
Probab=24.60 E-value=9.6 Score=24.39 Aligned_cols=27 Identities=22% Similarity=0.439 Sum_probs=21.8
Q ss_pred CCCeeeC-hhhhhhhhhhhcCCcccccc
Q 032124 119 KGQSLVL-VERLHKLDCENSNGMDINFN 145 (147)
Q Consensus 119 ~~GR~lT-~~G~~~LDri~~~~~~~~~~ 145 (147)
++.+.++ +.|++.||--.+||++|.+.
T Consensus 9 ~~~~~~~~~~~~slL~aa~~~Gi~i~~~ 36 (94)
T d1awda_ 9 SGEETIECPEDTYILDAAEEAGLDLPYS 36 (94)
T ss_dssp TEEEEEECCTTSCHHHHHHHTTCCCCCS
T ss_pred CCcEEEEeCCCCcHHHHHHHcCCcEEEe
Confidence 3445566 88999999999999999764
No 98
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Probab=24.50 E-value=16 Score=23.21 Aligned_cols=19 Identities=21% Similarity=0.363 Sum_probs=17.0
Q ss_pred hhHHHHHHHHhHhCCceee
Q 032124 98 GSVARHILHQLQDTNIIEL 116 (147)
Q Consensus 98 gsiiR~~LqqLE~~glV~k 116 (147)
..++..|+++||+.|++++
T Consensus 164 ~e~v~~I~~~L~~~g~~~~ 182 (183)
T d1m8pa3 164 RSIVHEIILVLESQGFLER 182 (183)
T ss_dssp HHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHHcCCCCC
Confidence 5689999999999999975
No 99
>d1frda_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]}
Probab=23.86 E-value=11 Score=24.04 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=19.8
Q ss_pred eeeC-hhhhhhhhhhhcCCcccccc
Q 032124 122 SLVL-VERLHKLDCENSNGMDINFN 145 (147)
Q Consensus 122 R~lT-~~G~~~LDri~~~~~~~~~~ 145 (147)
+.++ +.|++.||-...+|++|.+.
T Consensus 16 ~ti~v~~g~siLdaa~~~Gi~i~~~ 40 (98)
T d1frda_ 16 TTIEIDEETTILDGAEENGIELPFS 40 (98)
T ss_dssp EEEEEETTSCHHHHHHHTTCCCCCS
T ss_pred EEEEeCCCChHHHHHHHcCCCEEEe
Confidence 3343 78999999999999999875
No 100
>d1iuea_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=22.35 E-value=11 Score=24.34 Aligned_cols=26 Identities=15% Similarity=0.309 Sum_probs=21.8
Q ss_pred CCeeeC-hhhhhhhhhhhcCCcccccc
Q 032124 120 GQSLVL-VERLHKLDCENSNGMDINFN 145 (147)
Q Consensus 120 ~GR~lT-~~G~~~LDri~~~~~~~~~~ 145 (147)
+.+.++ +.|++.||-...||++|.+.
T Consensus 12 ~~~~~~~~~getlLda~~~~gi~i~~~ 38 (98)
T d1iuea_ 12 GEKKIECNEDEYILDASERQNVELPYS 38 (98)
T ss_dssp EEEEEEEETTSCHHHHHHHTTCCCCCS
T ss_pred CeEEEEECCCCcHHHHHHHcCCCeEEc
Confidence 346776 89999999999999998764
No 101
>d2ve8a1 a.4.5.67 (A:745-811) DNA translocase FtsK {Pseudomonas aeruginosa [TaxId: 287]}
Probab=21.46 E-value=25 Score=21.84 Aligned_cols=50 Identities=12% Similarity=0.141 Sum_probs=33.6
Q ss_pred chhHHhHHHHHHHHHHhCCCchhhHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhHhCCceeeCC
Q 032124 52 DWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS 118 (147)
Q Consensus 52 DW~YiRaASi~RklYl~g~vGV~~lr~~YGg~krrG~~P~h~~~asgsiiR~~LqqLE~~glV~k~~ 118 (147)
|=+|-.|+.++. -.+-..++.|.+.|+-.- +=.-.++.+||+.|+|.-..
T Consensus 3 D~ly~~a~~~V~---~~~kaS~S~lQR~l~IGY--------------nRAariid~LE~~GiVsp~~ 52 (67)
T d2ve8a1 3 DPLYDEAVRFVT---ESRRASISAVQRKLKIGY--------------NRAARMIEAMEMAGVVTPMN 52 (67)
T ss_dssp CTTHHHHHHHHH---HHCCCCHHHHHHHHTCCH--------------HHHHHHHHHHHHTTSBCCCC
T ss_pred cHHHHHHHHHHH---HhCcccHHHHHHHHhcch--------------HHHHHHHHHHHHCcCCCCCC
Confidence 446666666543 346788888888776432 22346899999999997543
No 102
>d1exea_ a.55.1.1 (A:) Transcription factor 1, TF1 {Bacteriophage SPO1 [TaxId: 10685]}
Probab=21.45 E-value=68 Score=20.25 Aligned_cols=25 Identities=20% Similarity=0.387 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHcCCCCCCCceee
Q 032124 13 HEFVKAYAAHLKRSGKIELPTWNDI 37 (147)
Q Consensus 13 ~~fI~~~A~~LK~~gki~~P~W~d~ 37 (147)
+.|++.+.+.|++.+.|++|.+-.|
T Consensus 26 ~~~~~~i~~~L~~g~~V~l~gfG~F 50 (99)
T d1exea_ 26 ASFEKIITETVAKGDKVQLTGFLNI 50 (99)
T ss_dssp HHHHHHHHHHHHHTCCCCBTTTBCC
T ss_pred HHHHHHHHHHHhcCCcEEEeeeeEE
Confidence 5678888899999999999999887
No 103
>d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.24 E-value=33 Score=21.45 Aligned_cols=33 Identities=15% Similarity=0.352 Sum_probs=27.5
Q ss_pred ccccChhHHHHHHHHHHHHcCCCCCCCceeeeccC
Q 032124 7 VKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTG 41 (147)
Q Consensus 7 VkDV~~~~fI~~~A~~LK~~gki~~P~W~d~vKTg 41 (147)
..|+++..+|..|-++..+++. .|++..+-.+|
T Consensus 7 ~~~~~~~~y~s~LqE~~Qk~~~--~p~y~~~~~~G 39 (90)
T d1qu6a1 7 AGDLSAGFFMEELNTYRQKQGV--VLKYQELPNSG 39 (90)
T ss_dssp CCCSSSCSHHHHHHHHHHHHTC--CCEEEEEESCB
T ss_pred ccCCCCCCHHHHHHHHHHHhCC--CCcEEEEEeeC
Confidence 5788999999999999999864 68888776665
No 104
>d1zyba1 a.4.5.4 (A:148-220) Probable transcription regulator BT4300, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=20.38 E-value=31 Score=20.74 Aligned_cols=19 Identities=37% Similarity=0.504 Sum_probs=15.9
Q ss_pred hHHHHHHHHhHhCCceeeC
Q 032124 99 SVARHILHQLQDTNIIELD 117 (147)
Q Consensus 99 siiR~~LqqLE~~glV~k~ 117 (147)
.-+=.+|++|++.|+|+..
T Consensus 42 ~tvsr~l~~l~~~g~I~~~ 60 (73)
T d1zyba1 42 LNISKTLNELQDNGLIELH 60 (73)
T ss_dssp HHHHHHHHHHHHTTSCEEE
T ss_pred HHHHHHHHHHHHCCCEEec
Confidence 4566789999999999865
No 105
>d1dcpa_ d.74.1.1 (A:) Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=20.33 E-value=28 Score=22.36 Aligned_cols=37 Identities=14% Similarity=0.182 Sum_probs=26.2
Q ss_pred hHHHHHHHHhHhCCceeeCCCCCeeeC--------hhhhhhhhhhhc
Q 032124 99 SVARHILHQLQDTNIIELDSKGQSLVL--------VERLHKLDCENS 137 (147)
Q Consensus 99 siiR~~LqqLE~~glV~k~~~~GR~lT--------~~G~~~LDri~~ 137 (147)
.=|...|++|+..||-..+ ++..|+ .++..+|++++.
T Consensus 6 ee~~~~l~~L~~~GW~~~~--~~~~L~r~f~F~~f~~a~~Fv~~Va~ 50 (99)
T d1dcpa_ 6 EERDQLLPNLRAVGWNELE--GRDAIFKQFHFKDFNRAFGFMTRVAL 50 (99)
T ss_dssp HHHHHHHHHHHHHTCEECT--TSSCEEEEEECSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCEEEc--CCCeEEEEEEeCCHHHHHHHHHHHHH
Confidence 4467889999999997643 333444 578888888774
Done!