Query 032125
Match_columns 147
No_of_seqs 126 out of 1057
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 09:55:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032125.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032125hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00086 40S ribosomal protein 100.0 7.7E-61 1.7E-65 368.9 14.0 147 1-147 1-147 (147)
2 PLN00210 40S ribosomal protein 100.0 5.6E-61 1.2E-65 367.5 12.8 140 8-147 2-141 (141)
3 PRK00474 rps9p 30S ribosomal p 100.0 2.2E-57 4.7E-62 345.2 13.1 132 9-147 3-134 (134)
4 TIGR03627 arch_S9P archaeal ri 100.0 8.8E-57 1.9E-61 340.4 12.7 129 11-147 2-130 (130)
5 COG0103 RpsI Ribosomal protein 100.0 1.4E-55 3.1E-60 332.4 12.0 125 10-147 5-130 (130)
6 CHL00079 rps9 ribosomal protei 100.0 8.9E-55 1.9E-59 329.4 12.8 125 10-147 4-130 (130)
7 PRK00132 rpsI 30S ribosomal pr 100.0 1.5E-54 3.2E-59 328.2 12.6 126 9-147 4-130 (130)
8 PF00380 Ribosomal_S9: Ribosom 100.0 1.6E-53 3.4E-58 319.1 7.1 120 15-147 1-121 (121)
9 KOG1753 40S ribosomal protein 100.0 1.4E-45 3.1E-50 278.4 11.1 141 7-147 5-145 (145)
10 KOG1697 Mitochondrial/chloropl 100.0 2E-44 4.3E-49 296.8 9.8 127 8-147 148-275 (275)
11 KOG0058 Peptide exporter, ABC 95.1 0.017 3.6E-07 54.7 2.8 80 14-95 503-621 (716)
12 COG4988 CydD ABC-type transpor 94.3 0.023 5.1E-07 52.4 1.8 99 14-114 356-500 (559)
13 COG2274 SunT ABC-type bacterio 90.8 0.44 9.5E-06 45.2 5.2 100 15-117 509-656 (709)
14 TIGR03797 NHPM_micro_ABC2 NHPM 89.0 1.2 2.7E-05 41.0 6.6 51 66-119 577-637 (686)
15 TIGR03796 NHPM_micro_ABC1 NHPM 88.9 1.2 2.7E-05 41.1 6.6 52 66-120 604-665 (710)
16 PTZ00265 multidrug resistance 88.6 0.39 8.4E-06 48.8 3.3 101 13-116 1259-1404(1466)
17 PRK10790 putative multidrug tr 88.5 0.74 1.6E-05 41.6 4.7 47 66-115 465-521 (592)
18 PRK11174 cysteine/glutathione 86.9 0.75 1.6E-05 41.5 3.7 47 66-115 474-530 (588)
19 KOG0055 Multidrug/pheromone ex 86.2 1.5 3.2E-05 44.2 5.6 86 28-116 405-535 (1228)
20 KOG0055 Multidrug/pheromone ex 86.2 0.9 2E-05 45.6 4.1 85 28-115 1042-1171(1228)
21 PLN03130 ABC transporter C fam 84.5 1.5 3.2E-05 45.2 4.8 80 15-96 1275-1392(1622)
22 TIGR00958 3a01208 Conjugate Tr 84.4 1 2.2E-05 42.1 3.4 28 66-95 606-634 (711)
23 COG4608 AppF ABC-type oligopep 83.5 0.38 8.2E-06 40.8 0.2 80 11-99 45-129 (268)
24 PRK10787 DNA-binding ATP-depen 81.8 4.6 9.9E-05 38.8 6.8 69 23-96 614-691 (784)
25 COG1132 MdlB ABC-type multidru 81.8 2.2 4.7E-05 38.5 4.4 98 15-113 365-508 (567)
26 PLN03232 ABC transporter C fam 81.0 2.6 5.7E-05 42.9 5.1 77 17-95 1274-1388(1495)
27 TIGR02868 CydC thiol reductant 80.9 3.7 8.1E-05 36.5 5.5 49 65-116 458-516 (529)
28 TIGR00957 MRP_assoc_pro multi 78.2 2.6 5.5E-05 43.1 4.0 30 65-96 1409-1439(1522)
29 COG1124 DppF ABC-type dipeptid 77.3 0.86 1.9E-05 38.4 0.3 28 14-41 42-72 (252)
30 COG1750 Archaeal serine protea 74.4 6.6 0.00014 36.8 5.3 72 23-96 55-132 (579)
31 COG3840 ThiQ ABC-type thiamine 74.3 4.4 9.6E-05 33.5 3.7 17 25-41 48-64 (231)
32 PF13541 ChlI: Subunit ChlI of 73.3 9.6 0.00021 28.4 5.1 71 24-97 3-73 (121)
33 COG3842 PotA ABC-type spermidi 71.9 7.7 0.00017 34.1 4.9 14 28-41 57-70 (352)
34 PTZ00243 ABC transporter; Prov 71.0 7 0.00015 40.2 5.0 28 66-95 1434-1462(1560)
35 TIGR01271 CFTR_protein cystic 70.4 7 0.00015 40.0 4.9 30 65-96 1341-1371(1490)
36 TIGR00763 lon ATP-dependent pr 65.1 13 0.00028 35.5 5.2 74 23-96 618-695 (775)
37 cd03214 ABC_Iron-Siderophores_ 63.7 17 0.00037 27.6 4.9 81 28-116 51-143 (180)
38 PF03755 YicC_N: YicC-like fam 60.4 30 0.00065 26.5 5.7 79 9-96 2-90 (159)
39 KOG3288 OTU-like cysteine prot 59.4 9.6 0.00021 32.7 3.0 32 65-96 273-304 (307)
40 TIGR00416 sms DNA repair prote 55.5 21 0.00045 32.1 4.6 47 49-97 337-385 (454)
41 TIGR02903 spore_lon_C ATP-depe 55.1 20 0.00044 33.3 4.6 62 28-96 474-539 (615)
42 PF02601 Exonuc_VII_L: Exonucl 49.8 15 0.00033 30.7 2.7 50 47-96 55-106 (319)
43 cd03216 ABC_Carb_Monos_I This 49.4 38 0.00083 25.4 4.6 34 82-116 86-128 (163)
44 COG1125 OpuBA ABC-type proline 47.3 15 0.00033 31.8 2.3 20 26-45 51-70 (309)
45 TIGR02653 Lon_rel_chp conserve 47.2 48 0.001 31.8 5.8 88 6-96 493-592 (675)
46 PRK15317 alkyl hydroperoxide r 45.8 26 0.00056 31.4 3.7 58 32-89 172-232 (517)
47 TIGR03140 AhpF alkyl hydropero 44.1 25 0.00054 31.6 3.3 24 66-89 210-233 (515)
48 PF05362 Lon_C: Lon protease ( 41.8 52 0.0011 26.6 4.5 54 23-77 46-104 (204)
49 cd03247 ABCC_cytochrome_bd The 39.8 36 0.00078 25.7 3.2 34 82-116 102-144 (178)
50 COG4604 CeuD ABC-type enteroch 37.7 25 0.00054 29.6 2.1 41 28-74 53-93 (252)
51 PRK00286 xseA exodeoxyribonucl 34.9 37 0.0008 29.9 2.9 46 48-96 177-223 (438)
52 PF02120 Flg_hook: Flagellar h 33.5 27 0.00059 23.2 1.5 52 62-124 22-73 (85)
53 PF00475 IGPD: Imidazoleglycer 33.2 1.2E+02 0.0026 23.6 5.1 70 19-93 70-144 (145)
54 TIGR00764 lon_rel lon-related 32.1 1.1E+02 0.0024 28.5 5.7 64 30-96 450-514 (608)
55 PRK11823 DNA repair protein Ra 30.2 87 0.0019 28.0 4.5 47 49-97 323-371 (446)
56 TIGR00237 xseA exodeoxyribonuc 29.9 48 0.001 29.5 2.8 47 48-96 171-218 (432)
57 TIGR01193 bacteriocin_ABC ABC- 29.5 33 0.00073 31.8 1.8 48 66-116 600-657 (708)
58 PF09428 DUF2011: Fungal prote 29.4 19 0.0004 27.4 0.1 22 24-45 2-24 (131)
59 TIGR01424 gluta_reduc_2 glutat 29.4 40 0.00086 29.5 2.2 22 68-89 2-23 (446)
60 PRK06617 2-octaprenyl-6-methox 28.8 39 0.00085 28.5 2.0 19 70-88 3-21 (374)
61 PRK06185 hypothetical protein; 27.8 40 0.00088 28.4 1.9 21 66-88 6-26 (407)
62 COG4104 Uncharacterized conser 27.3 52 0.0011 24.1 2.1 17 25-41 59-75 (98)
63 COG3526 Uncharacterized protei 27.3 52 0.0011 23.8 2.0 22 21-42 37-61 (99)
64 PF09860 DUF2087: Uncharacteri 27.1 79 0.0017 21.4 2.9 16 107-124 47-62 (71)
65 PF06905 FAIM1: Fas apoptotic 27.0 78 0.0017 25.3 3.2 38 10-47 53-94 (177)
66 PTZ00367 squalene epoxidase; P 26.6 69 0.0015 29.6 3.3 39 48-88 15-53 (567)
67 PRK08013 oxidoreductase; Provi 26.4 40 0.00086 28.8 1.6 18 71-88 6-23 (400)
68 COG4559 ABC-type hemin transpo 26.3 41 0.00089 28.5 1.6 21 26-46 51-71 (259)
69 PF12637 TSCPD: TSCPD domain; 26.2 89 0.0019 22.0 3.1 30 66-95 23-53 (95)
70 PRK08849 2-octaprenyl-3-methyl 26.2 47 0.001 28.1 2.0 19 70-88 5-23 (384)
71 PF08194 DIM: DIM protein; In 26.2 41 0.00088 20.4 1.1 10 30-39 23-32 (36)
72 PRK09838 periplasmic copper-bi 26.1 2.6E+02 0.0057 20.6 5.8 51 28-78 54-106 (115)
73 COG2884 FtsE Predicted ATPase 25.7 76 0.0016 26.4 3.0 14 28-41 54-67 (223)
74 COG4531 ZnuA ABC-type Zn2+ tra 25.4 29 0.00063 30.1 0.6 48 80-132 158-205 (318)
75 PF01808 AICARFT_IMPCHas: AICA 25.3 49 0.0011 28.8 1.9 42 48-92 267-315 (315)
76 cd03229 ABC_Class3 This class 25.0 82 0.0018 23.7 3.0 33 83-116 105-146 (178)
77 TIGR02032 GG-red-SF geranylger 24.3 50 0.0011 25.9 1.7 18 71-88 3-20 (295)
78 PRK08163 salicylate hydroxylas 24.0 58 0.0013 27.3 2.2 20 69-88 5-24 (396)
79 COG0644 FixC Dehydrogenases (f 24.0 64 0.0014 27.7 2.4 22 69-90 4-25 (396)
80 PF01479 S4: S4 domain; Inter 24.0 42 0.00092 20.0 1.0 13 30-42 25-37 (48)
81 TIGR02204 MsbA_rel ABC transpo 23.8 50 0.0011 29.6 1.8 47 67-115 466-521 (576)
82 COG1148 HdrA Heterodisulfide r 23.7 65 0.0014 30.4 2.5 35 50-88 110-144 (622)
83 cd03482 MutL_Trans_MutL MutL_T 23.7 30 0.00065 25.3 0.3 11 32-42 47-57 (123)
84 TIGR03375 type_I_sec_LssB type 23.7 53 0.0012 30.4 2.0 48 66-116 590-647 (694)
85 cd03483 MutL_Trans_MLH1 MutL_T 23.7 26 0.00056 25.8 -0.0 11 32-42 51-61 (127)
86 PRK08773 2-octaprenyl-3-methyl 23.3 52 0.0011 27.8 1.7 19 70-88 8-26 (392)
87 PRK06996 hypothetical protein; 23.2 53 0.0011 28.0 1.8 21 69-89 12-32 (398)
88 PRK10157 putative oxidoreducta 23.2 55 0.0012 28.6 1.9 22 66-89 5-26 (428)
89 PRK08020 ubiF 2-octaprenyl-3-m 23.1 58 0.0013 27.3 2.0 21 66-88 5-25 (391)
90 cd03222 ABC_RNaseL_inhibitor T 23.1 78 0.0017 24.6 2.6 34 82-116 75-117 (177)
91 TIGR03329 Phn_aa_oxid putative 23.1 57 0.0012 28.6 2.0 24 66-89 22-45 (460)
92 PRK06753 hypothetical protein; 22.9 63 0.0014 26.8 2.1 19 70-88 2-20 (373)
93 cd03485 MutL_Trans_hPMS_1_like 22.4 38 0.00082 24.9 0.6 11 32-42 52-62 (132)
94 TIGR02902 spore_lonB ATP-depen 22.3 3.1E+02 0.0067 25.1 6.6 65 30-96 378-455 (531)
95 PF01494 FAD_binding_3: FAD bi 22.2 74 0.0016 25.4 2.3 18 70-87 3-20 (356)
96 PRK08850 2-octaprenyl-6-methox 22.0 54 0.0012 27.9 1.6 19 70-88 6-24 (405)
97 TIGR01846 type_I_sec_HlyB type 21.9 66 0.0014 29.9 2.2 48 66-116 582-639 (694)
98 PRK10015 oxidoreductase; Provi 21.9 59 0.0013 28.5 1.8 21 69-89 6-26 (429)
99 PRK11160 cysteine/glutathione 21.5 68 0.0015 29.1 2.2 48 67-116 465-521 (574)
100 PF10865 DUF2703: Domain of un 21.5 47 0.001 24.9 1.0 17 29-45 61-77 (120)
101 PRK07588 hypothetical protein; 21.5 70 0.0015 27.0 2.1 19 70-88 2-20 (391)
102 PRK07045 putative monooxygenas 21.4 76 0.0016 26.7 2.4 19 70-88 7-25 (388)
103 PRK07364 2-octaprenyl-6-methox 21.2 61 0.0013 27.4 1.7 20 69-88 19-38 (415)
104 PRK11445 putative oxidoreducta 21.2 71 0.0015 26.8 2.1 21 70-92 3-23 (351)
105 COG0665 DadA Glycine/D-amino a 20.6 80 0.0017 26.1 2.3 20 69-88 5-24 (387)
106 PRK09126 hypothetical protein; 20.4 71 0.0015 26.7 2.0 19 70-88 5-23 (392)
107 PHA01748 hypothetical protein 20.2 1.4E+02 0.0029 19.5 2.9 18 77-95 25-42 (60)
No 1
>PTZ00086 40S ribosomal protein S16; Provisional
Probab=100.00 E-value=7.7e-61 Score=368.91 Aligned_cols=147 Identities=65% Similarity=1.120 Sum_probs=140.4
Q ss_pred CCcCCCCCCeEeEeeeccceEEEEEEEeCceeEEEcCeeccccCcHHHHHHhhhhHHhhcccccceeceEEEEecCcccc
Q 032125 1 MATAAPKTESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTS 80 (147)
Q Consensus 1 ~~~~~~~~~~~~~~GrRKta~A~v~l~~G~G~i~INg~~l~~y~~~~~r~~i~~PL~~~~~~~~~~~di~v~V~GGG~~g 80 (147)
|+.-..+.+.++++||||+|+|+|++.+|+|+|+|||+|+++||++.++++|++||.+++.+.+++|||+|+|+|||+||
T Consensus 1 ~~~~~~~~~~v~~~GrRKtAiArv~l~~G~G~i~INg~~l~~y~~~~~r~~i~~Pl~~~~~~~~~~~Di~i~V~GGG~sg 80 (147)
T PTZ00086 1 MAEKTTKLKQVQTFGKKKTAVAVALVTKGKGLIRVNGVPLDLINPETLRAKVFEPLLLVGKERFSRLDIRVRVRGGGQVA 80 (147)
T ss_pred CCccccCCcceEEeeecCCceEEEEEEcCCceEEECCcCHHHhCcHHHHHHHHHHHHHhCcCccCceeEEEEEEcCCHHH
Confidence 44555678899999999999999999999999999999999999988999999999999875578999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhhhcCChhhHHHHHHHhhhcCCCceeccCCCcccCCCCccccccCcccccC
Q 032125 81 QIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 147 (147)
Q Consensus 81 Qa~Air~aiAraL~~~~~~~~~~~~r~~Lk~~l~~yd~glLt~D~R~~ERKK~G~~kARk~~Q~SkR 147 (147)
||+||||||||||+.|++.|.|++.++.||+.|+.||+||||+|||+|||||||++||||+||||||
T Consensus 81 QA~Air~aIaRAL~~~~~~~~~~~~r~~Lk~~~~~ydrglLtrD~R~~ERKK~G~~kARk~~Q~SkR 147 (147)
T PTZ00086 81 QAYAIRQAIAKGLVAYYQKYVDEATKAELKDKLLAYDRSLLVADPRRCEPKKFGGPGARARFQKSYR 147 (147)
T ss_pred HHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHhhccCCcccCCccccccCcCCCcccccccccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998
No 2
>PLN00210 40S ribosomal protein S16; Provisional
Probab=100.00 E-value=5.6e-61 Score=367.54 Aligned_cols=140 Identities=97% Similarity=1.502 Sum_probs=135.8
Q ss_pred CCeEeEeeeccceEEEEEEEeCceeEEEcCeeccccCcHHHHHHhhhhHHhhcccccceeceEEEEecCcccchHHHHHH
Q 032125 8 TESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQ 87 (147)
Q Consensus 8 ~~~~~~~GrRKta~A~v~l~~G~G~i~INg~~l~~y~~~~~r~~i~~PL~~~~~~~~~~~di~v~V~GGG~~gQa~Air~ 87 (147)
.+.++++||||||+|+|++.||+|+|+|||+|+++|+++.++++|++||.+++.+.+++|||+|+|+|||+||||+||||
T Consensus 2 ~~~~~~~GrRKta~Arv~~~~G~G~i~INg~~~~~y~~~~~r~~i~~Pl~~~~~~~~~~~Di~~~V~GGG~sgQa~Air~ 81 (141)
T PLN00210 2 TESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVQPEILRFKAFEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQ 81 (141)
T ss_pred CcceeeeccCCCceEEEEEECCCceEEECCCcHHHHCCHHHHHHHHHHHHHhCccccCceeEEEEEEcCCHhHHHHHHHH
Confidence 46799999999999999999999999999999999999889999999999999766789999999999999999999999
Q ss_pred HHHHHHHHhhhhcCChhhHHHHHHHhhhcCCCceeccCCCcccCCCCccccccCcccccC
Q 032125 88 SIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 147 (147)
Q Consensus 88 aiAraL~~~~~~~~~~~~r~~Lk~~l~~yd~glLt~D~R~~ERKK~G~~kARk~~Q~SkR 147 (147)
||||||+.|+++|+|++.++.||+.|++||+||||+|||+|||||||++||||+||||||
T Consensus 82 aiaraL~~~~~~~~~~~~r~~Lk~~l~~yd~glLtrD~R~~ERKK~G~~kARk~~Q~Skr 141 (141)
T PLN00210 82 SIAKALVAYYQKYVDEQSKKEIKDILLRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 141 (141)
T ss_pred HHHHHHHHhcccccChhHHHHHHHHHHhccCCCccCCchhhccCcCCccccccccccccC
Confidence 999999999999999999999999999999999999999999999999999999999998
No 3
>PRK00474 rps9p 30S ribosomal protein S9P; Reviewed
Probab=100.00 E-value=2.2e-57 Score=345.21 Aligned_cols=132 Identities=50% Similarity=0.839 Sum_probs=123.7
Q ss_pred CeEeEeeeccceEEEEEEEeCceeEEEcCeeccccCcHHHHHHhhhhHHhhcccccceeceEEEEecCcccchHHHHHHH
Q 032125 9 ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQS 88 (147)
Q Consensus 9 ~~~~~~GrRKta~A~v~l~~G~G~i~INg~~l~~y~~~~~r~~i~~PL~~~~~~~~~~~di~v~V~GGG~~gQa~Air~a 88 (147)
+.++++||||+|+|+|+|.||+|+|+|||+|+++|+++.++++|++||.+++.+.+++|||+|+|+|||+||||+|||||
T Consensus 3 ~~~~~~GrRKta~A~v~l~~G~G~i~VNg~~~~~y~~~~~r~~i~~Pl~~~~~~~~~~~di~i~V~GGG~sgQa~Air~a 82 (134)
T PRK00474 3 KVVITSGKRKTAIARATIREGKGRVRINGVPLELIEPELARLKIMEPLILAGEDLRSKVDIDVNVEGGGIMGQADAARTA 82 (134)
T ss_pred ceEEEEeeCCCeEEEEEEEcCceEEEECCEeHHHHCCHHHHHHHHHHHHHhCccccCCccEEEEEEcCChhHHHHHHHHH
Confidence 56899999999999999999999999999999999988999999999999984456899999999999999999999999
Q ss_pred HHHHHHHhhhhcCChhhHHHHHHHhhhcCCCceeccCCCcccCCCCccccccCcccccC
Q 032125 89 IAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 147 (147)
Q Consensus 89 iAraL~~~~~~~~~~~~r~~Lk~~l~~yd~glLt~D~R~~ERKK~G~~kARk~~Q~SkR 147 (147)
|||||++|++ + ++||+.|++||+||||+|||+|||||||++||||+||||||
T Consensus 83 IaraL~~~~~---~----~~~r~~lk~~d~glLtrD~R~~ERKK~G~~kARk~~Q~SkR 134 (134)
T PRK00474 83 IARGLVEWTG---D----MELKDAFLAYDRTLLVGDPRRTEPKKWGGKGARAKRQKSYR 134 (134)
T ss_pred HHHHHHHhcc---C----HHHHHHHHHhcCCCcccCchhhccCcCCCccccccccccCC
Confidence 9999999854 2 36888888899999999999999999999999999999998
No 4
>TIGR03627 arch_S9P archaeal ribosomal protein S9P. This model describes exclusively the archaeal ribosomal protein S9P. Homologous eukaryotic and bacterial ribosomal proteins are excluded from this model.
Probab=100.00 E-value=8.8e-57 Score=340.38 Aligned_cols=129 Identities=52% Similarity=0.827 Sum_probs=120.5
Q ss_pred EeEeeeccceEEEEEEEeCceeEEEcCeeccccCcHHHHHHhhhhHHhhcccccceeceEEEEecCcccchHHHHHHHHH
Q 032125 11 VQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIA 90 (147)
Q Consensus 11 ~~~~GrRKta~A~v~l~~G~G~i~INg~~l~~y~~~~~r~~i~~PL~~~~~~~~~~~di~v~V~GGG~~gQa~Air~aiA 90 (147)
++++|+||+|+|+|+|.||+|+|+|||+|+++|+++.+++.|++||.+++. .+++|||+|+|+|||+||||+|||||||
T Consensus 2 ~~~~GrRKta~A~v~l~~G~G~i~VNg~~~~~y~~~~~r~~i~~Pl~~~~~-~~~~~Dv~i~V~GGG~sgQa~Air~aIa 80 (130)
T TIGR03627 2 VITSGKRKTAIARATIREGKGRVRINGVPVELYPPELARLKIMEPLILAGD-IAKEVDIDVKVSGGGIMGQADAARTAIA 80 (130)
T ss_pred eEEEeeCCCeEEEEEEEcCceEEEECCEeHHHhCCHHHHHHHHHHHHHHhc-cccCccEEEEEEcCChhHHHHHHHHHHH
Confidence 689999999999999999999999999999999988899999999999972 3489999999999999999999999999
Q ss_pred HHHHHhhhhcCChhhHHHHHHHhhhcCCCceeccCCCcccCCCCccccccCcccccC
Q 032125 91 KALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 147 (147)
Q Consensus 91 raL~~~~~~~~~~~~r~~Lk~~l~~yd~glLt~D~R~~ERKK~G~~kARk~~Q~SkR 147 (147)
|||+.|++ + ++|++.|++||+||||+|||+|||||||++||||+||||||
T Consensus 81 raL~~~~~---~----~~~r~~lk~~d~glLtrD~R~~ERKK~G~~kARk~~Q~SkR 130 (130)
T TIGR03627 81 RGLVEFTG---D----KELRDAFRAYDRTLLVNDPRRKEPKKPGGRGARAKRQKSYR 130 (130)
T ss_pred HHHHHhcc---C----HHHHHHHHHhcCCCccCCchhhccCcCCCccccccccccCC
Confidence 99999854 2 45788888899999999999999999999999999999998
No 5
>COG0103 RpsI Ribosomal protein S9 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-55 Score=332.40 Aligned_cols=125 Identities=45% Similarity=0.663 Sum_probs=116.0
Q ss_pred eEeEeeeccceEEEEEEEeCceeEEEcCeeccccCc-HHHHHHhhhhHHhhcccccceeceEEEEecCcccchHHHHHHH
Q 032125 10 SVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEP-EILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQS 88 (147)
Q Consensus 10 ~~~~~GrRKta~A~v~l~~G~G~i~INg~~l~~y~~-~~~r~~i~~PL~~~~~~~~~~~di~v~V~GGG~~gQa~Air~a 88 (147)
+++++||||+|+|+|+|.||+|+|+|||+|+++||+ +.++++|++||.+++. .++|||+|+|+|||+||||+|||||
T Consensus 5 ~~~~tGkRK~AvArv~l~~g~G~i~vNg~~~e~yf~~e~~r~~i~~Pl~l~~~--~~~~Di~v~V~GGG~~GQA~AiR~g 82 (130)
T COG0103 5 QVYTTGKRKSAVARVRLVPGKGKITVNGRPLELYFPRETLRMKIMQPLLLTGT--VGKFDIDVTVKGGGISGQAGAIRHG 82 (130)
T ss_pred eeeeeccccceEEEEEEEcCCcEEEECCcCHHHhcchHHHHHHHhhhHHHhCc--cccccEEEEEecCCchHHHHHHHHH
Confidence 789999999999999999999999999999999997 7899999999999996 4999999999999999999999999
Q ss_pred HHHHHHHhhhhcCChhhHHHHHHHhhhcCCCceeccCCCcccCCCCccccccCcccccC
Q 032125 89 IAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 147 (147)
Q Consensus 89 iAraL~~~~~~~~~~~~r~~Lk~~l~~yd~glLt~D~R~~ERKK~G~~kARk~~Q~SkR 147 (147)
|||||++| ++++|+.|+ +| ||||+|||++||||||++|||++||||||
T Consensus 83 IaRAL~~~-----~~~lr~~lk----~~--g~LtrD~R~~ErKK~G~~kARr~~Q~SkR 130 (130)
T COG0103 83 IARALVEY-----DPELRPALK----KA--GLLTRDPRRVERKKYGLKKARRRPQFSKR 130 (130)
T ss_pred HHHHHHHH-----CHHHHHHHH----HC--CCcccCccccccccccccccccccccccC
Confidence 99999998 445445554 44 79999999999999999999999999998
No 6
>CHL00079 rps9 ribosomal protein S9
Probab=100.00 E-value=8.9e-55 Score=329.41 Aligned_cols=125 Identities=38% Similarity=0.410 Sum_probs=116.8
Q ss_pred eEeEeeeccceEEEEEEEeCceeEEEcCeeccccCc--HHHHHHhhhhHHhhcccccceeceEEEEecCcccchHHHHHH
Q 032125 10 SVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEP--EILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQ 87 (147)
Q Consensus 10 ~~~~~GrRKta~A~v~l~~G~G~i~INg~~l~~y~~--~~~r~~i~~PL~~~~~~~~~~~di~v~V~GGG~~gQa~Air~ 87 (147)
+++++|+||||+|+|+|.||+|+|+|||+|+++||+ ..++++|++||.+++. +++|||+|+|+|||+||||+||||
T Consensus 4 ~~~~~GrRKta~Arv~l~~G~G~i~INg~~~~~yf~~~~~~~~~v~~Pl~~~~~--~~~~Di~i~V~GGG~sgQa~Air~ 81 (130)
T CHL00079 4 LYIGTGRRKTAVAQVRLVPGSGEIIINGKPAEEYLQYNPNYLNAIKAPLKLLGL--ENKYDIIVKVKGGGLTGQAEAIRL 81 (130)
T ss_pred EEEEEeeCCCeEEEEEEEcCCcEEEECCCcHHHHCCcCHHHHHHHHHHHHHhCc--CCceeEEEEEEcCChhHHHHHHHH
Confidence 568999999999999999999999999999999997 4467899999999996 489999999999999999999999
Q ss_pred HHHHHHHHhhhhcCChhhHHHHHHHhhhcCCCceeccCCCcccCCCCccccccCcccccC
Q 032125 88 SIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 147 (147)
Q Consensus 88 aiAraL~~~~~~~~~~~~r~~Lk~~l~~yd~glLt~D~R~~ERKK~G~~kARk~~Q~SkR 147 (147)
||||||++| +|+.++.||+. ||||+|||+|||||||++||||+||||||
T Consensus 82 aIaraLv~~-----~~~~k~~Lk~~------glLtrD~R~~ERKK~G~~kARk~~Q~SkR 130 (130)
T CHL00079 82 GLARALCKI-----NPENRKSLKKE------GFLTRDARIKERKKYGLKKARKAPQFSKR 130 (130)
T ss_pred HHHHHHHHH-----CHHHHHHHHHc------CCcccCCcccccCcCCCcccccccccCCC
Confidence 999999998 45677888875 99999999999999999999999999998
No 7
>PRK00132 rpsI 30S ribosomal protein S9; Reviewed
Probab=100.00 E-value=1.5e-54 Score=328.19 Aligned_cols=126 Identities=38% Similarity=0.469 Sum_probs=118.1
Q ss_pred CeEeEeeeccceEEEEEEEeCceeEEEcCeeccccCc-HHHHHHhhhhHHhhcccccceeceEEEEecCcccchHHHHHH
Q 032125 9 ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEP-EILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQ 87 (147)
Q Consensus 9 ~~~~~~GrRKta~A~v~l~~G~G~i~INg~~l~~y~~-~~~r~~i~~PL~~~~~~~~~~~di~v~V~GGG~~gQa~Air~ 87 (147)
...+++||||+|+|+|++.+|+|+|+|||+|+++||+ +.++++|++||.+++. +++|||+|+|+|||+||||+||||
T Consensus 4 ~~~~~~GrRK~a~A~v~l~~G~G~i~INg~~~~~yf~~~~~r~~i~~Pl~~~~~--~~~~Di~i~V~GGG~sgQa~Air~ 81 (130)
T PRK00132 4 VQYYGTGRRKTAVARVRLKPGSGKITVNGRDLEEYFPRETLRMVVRQPLELTET--EGKFDVYVTVKGGGISGQAGAIRH 81 (130)
T ss_pred ceEEEEeeCCCeEEEEEEEcCccEEEECCEeHHHHcCCHHHHHHHHHHHHHhCc--cCceeEEEEEEcCCHHHHHHHHHH
Confidence 4567999999999999999999999999999999875 7899999999999996 489999999999999999999999
Q ss_pred HHHHHHHHhhhhcCChhhHHHHHHHhhhcCCCceeccCCCcccCCCCccccccCcccccC
Q 032125 88 SIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 147 (147)
Q Consensus 88 aiAraL~~~~~~~~~~~~r~~Lk~~l~~yd~glLt~D~R~~ERKK~G~~kARk~~Q~SkR 147 (147)
||||||+.| +|+.++.||.. ||||+|||+|||||||++||||+||||||
T Consensus 82 aiaraLv~~-----~~~~r~~Lk~~------glLtrD~R~~ErKK~G~~kARk~~q~skR 130 (130)
T PRK00132 82 GIARALLEY-----DPDLRPALKKA------GFLTRDARMVERKKYGLKKARRAPQFSKR 130 (130)
T ss_pred HHHHHHHHH-----CHHHHHHHHHC------CCcccCchhhccCcCCCcccccccccccC
Confidence 999999998 56777888875 99999999999999999999999999998
No 8
>PF00380 Ribosomal_S9: Ribosomal protein S9/S16; InterPro: IPR000754 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S9 is one of the proteins from the small ribosomal subunit. It belongs to the S9P family of ribosomal proteins which, on the basis of sequence similarities [, ], groups bacterial; algal chloroplast; cyanelle and archaeal S9 proteins; and mammalian; plant; and yeast mitochondrial ribosomal S9 proteins. These proteins adopt a beta-alpha-beta fold similar to that found in numerous RNA/DNA-binding proteins, as well as in kinases from the GHMP kinase family [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V46_I 3T1H_I 3MR8_I 3F1G_I 3D5C_I 3D5A_I 2WDG_I 3MS0_I 2WDM_I 2J02_I ....
Probab=100.00 E-value=1.6e-53 Score=319.13 Aligned_cols=120 Identities=47% Similarity=0.621 Sum_probs=107.5
Q ss_pred eeccceEEEEEEEeCceeEEEcCeeccccCc-HHHHHHhhhhHHhhcccccceeceEEEEecCcccchHHHHHHHHHHHH
Q 032125 15 GRKKTAVAVTYCKRGRGLIKINGCPIELVEP-EILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKAL 93 (147)
Q Consensus 15 GrRKta~A~v~l~~G~G~i~INg~~l~~y~~-~~~r~~i~~PL~~~~~~~~~~~di~v~V~GGG~~gQa~Air~aiAraL 93 (147)
|+||||+|+|||.||+|+|.|||+|+++||+ ..++++|++||.+++. +++|||+|+|+|||++|||+||+|||||||
T Consensus 1 GkRK~a~A~v~l~~G~G~i~INg~~l~~yf~~~~~r~~il~Pl~~~~~--~~~~di~~~V~GGG~~gQa~Air~aiaraL 78 (121)
T PF00380_consen 1 GKRKTAIARVWLKPGSGKIRINGKPLEEYFPNPYLREKILEPLELTGT--LGKFDIFANVKGGGISGQAGAIRLAIARAL 78 (121)
T ss_dssp EEETTEEEEEEEEESSSEEEETTSEHHHHSSSTTTGCCTTHHHHCTTT--STSEEEEEEEESSSHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEEEEEeCceEEEECCEEHHHhcCcHhHHHHHHHHHHHhCc--CCeeeEEEEEecCcEeeehHHHHHHHHHHH
Confidence 8999999999999999999999999988776 6789999999999986 489999999999999999999999999999
Q ss_pred HHhhhhcCChhhHHHHHHHhhhcCCCceeccCCCcccCCCCccccccCcccccC
Q 032125 94 VAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 147 (147)
Q Consensus 94 ~~~~~~~~~~~~r~~Lk~~l~~yd~glLt~D~R~~ERKK~G~~kARk~~Q~SkR 147 (147)
+.|++ +.++.||+. ||||+|||+|||||||++||||+||||||
T Consensus 79 ~~~~~-----~~~~~Lk~~------glLt~D~R~~ErKK~G~~kARk~~q~skR 121 (121)
T PF00380_consen 79 VKFNP-----SLKPELKKA------GLLTRDPRRVERKKPGRKKARKKPQWSKR 121 (121)
T ss_dssp HHHHT-----TCHHHHCTT------TTTS-BS-S-SS-CTTSSSSSBSSCTST-
T ss_pred HHHhH-----HHHHHHhhC------CceeecchhccccCCCCCCcccccccccC
Confidence 99965 456777776 99999999999999999999999999998
No 9
>KOG1753 consensus 40S ribosomal protein S16 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-45 Score=278.36 Aligned_cols=141 Identities=79% Similarity=1.260 Sum_probs=139.3
Q ss_pred CCCeEeEeeeccceEEEEEEEeCceeEEEcCeeccccCcHHHHHHhhhhHHhhcccccceeceEEEEecCcccchHHHHH
Q 032125 7 KTESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIR 86 (147)
Q Consensus 7 ~~~~~~~~GrRKta~A~v~l~~G~G~i~INg~~l~~y~~~~~r~~i~~PL~~~~~~~~~~~di~v~V~GGG~~gQa~Air 86 (147)
+.++++.+|++|+|+|.+.++.|+|.|.|||.|++.+.+.+++.+++||+.+++.+++..+||.|+|+|||.++|.+||+
T Consensus 5 ~~qSvq~fG~KK~AtAva~ck~G~glikvNg~ple~ie~~~L~~Kl~Epvlllgk~rfa~vdi~v~~~ggghvsqiyair 84 (145)
T KOG1753|consen 5 PLQSVQVFGRKKTATAVAHCKHGSGLIKVNGRPLELIEPEILRYKLLEPVLLLGKERFAGVDIRVRVKGGGHVSQIYAIR 84 (145)
T ss_pred cccceeeeccccceEEEEEeecCceEEEECCcchHhccHHHHHHHHhhhHhhhhhhhhCCCceEEEEecCchHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCChhhHHHHHHHhhhcCCCceeccCCCcccCCCCccccccCcccccC
Q 032125 87 QSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 147 (147)
Q Consensus 87 ~aiAraL~~~~~~~~~~~~r~~Lk~~l~~yd~glLt~D~R~~ERKK~G~~kARk~~Q~SkR 147 (147)
++||+||++|+++|+||..+.++|+.|.+||+.||+.|||+.|+||||+++||+++|.|||
T Consensus 85 qa~~kalvayyqkyvDE~skkeiKd~li~yDrtlLVADprr~esKKFGGpGAraryQksyr 145 (145)
T KOG1753|consen 85 QAIAKALVAYYQKYVDEQSKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 145 (145)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCceEEEcCcccccccccCCcchHHHhhhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999998
No 10
>KOG1697 consensus Mitochondrial/chloroplast ribosomal protein S9 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-44 Score=296.82 Aligned_cols=127 Identities=30% Similarity=0.372 Sum_probs=120.0
Q ss_pred CCeEeEeeeccceEEEEEEEeCceeEEEcCeeccccCc-HHHHHHhhhhHHhhcccccceeceEEEEecCcccchHHHHH
Q 032125 8 TESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEP-EILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIR 86 (147)
Q Consensus 8 ~~~~~~~GrRKta~A~v~l~~G~G~i~INg~~l~~y~~-~~~r~~i~~PL~~~~~~~~~~~di~v~V~GGG~~gQa~Air 86 (147)
...+.++|+||+|+|+|++.||+|+|.|||++++.||+ ..+|+.++.||.+++. +++|||+++|+|||.||||+||+
T Consensus 148 ~~~~~~~g~rK~a~A~V~v~~GtGk~~vNg~~~~~yF~~~~~Re~ll~Pl~~~~~--lg~~dv~atv~GGG~sgqagAI~ 225 (275)
T KOG1697|consen 148 EVRIIAVGRRKCARATVKVQPGTGKFDVNGRDLDVYFQHLQHREQLLYPLAVSES--LGKYDVTATVSGGGPSGQAGAIR 225 (275)
T ss_pred ceeeeeccceecceeEEEEecCceeEEecchhHHhHhccchhHHHHhhhHHHhcc--ccceeEEEEecCCCccchhHHHH
Confidence 44788999999999999999999999999999998887 5689999999999984 69999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCChhhHHHHHHHhhhcCCCceeccCCCcccCCCCccccccCcccccC
Q 032125 87 QSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 147 (147)
Q Consensus 87 ~aiAraL~~~~~~~~~~~~r~~Lk~~l~~yd~glLt~D~R~~ERKK~G~~kARk~~Q~SkR 147 (147)
||||+||+.| +++.++.||++ ||||+|+|.+||||+|++||||+|||+||
T Consensus 226 ~gia~aL~~~-----~p~~~~~lr~a------GlLTrD~R~vERKK~gq~kARkk~tW~KR 275 (275)
T KOG1697|consen 226 LGIAKALASF-----EPDLIEPLRLA------GLLTRDPRVVERKKPGQPKARKKPTWKKR 275 (275)
T ss_pred HHHHHHHHhc-----CHHHhhHHHhc------CccccchHhhhhccCCccccccccccccC
Confidence 9999999998 66888899998 99999999999999999999999999998
No 11
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.06 E-value=0.017 Score=54.68 Aligned_cols=80 Identities=30% Similarity=0.406 Sum_probs=56.1
Q ss_pred eeeccceEEEEEE---EeCceeEEEcCeeccccCcHHHHHHh----hhhHHhhcc-------------------------
Q 032125 14 FGRKKTAVAVTYC---KRGRGLIKINGCPIELVEPEILRFKA----FEPILLLGR------------------------- 61 (147)
Q Consensus 14 ~GrRKta~A~v~l---~~G~G~i~INg~~l~~y~~~~~r~~i----~~PL~~~~~------------------------- 61 (147)
.|.=|+++|.-.+ .|-+|.|.++|+|+.+|.+.++|.+| -||..+.++
T Consensus 503 SGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~AN 582 (716)
T KOG0058|consen 503 SGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMAN 582 (716)
T ss_pred CCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhC
Confidence 4556666664333 27789999999999999998888765 345433220
Q ss_pred ------cccceeceEEEEecCccc-chHHHHHHHHHHHHHH
Q 032125 62 ------HRFNGVDMRIRVKGGGHT-SQIYAIRQSIAKALVA 95 (147)
Q Consensus 62 ------~~~~~~di~v~V~GGG~~-gQa~Air~aiAraL~~ 95 (147)
+.-+.||-.|--+|-=+| ||-+ |.||||||+.
T Consensus 583 ah~FI~~~p~gY~T~VGEkG~qLSGGQKQ--RIAIARALlr 621 (716)
T KOG0058|consen 583 AHEFITNFPDGYNTVVGEKGSQLSGGQKQ--RIAIARALLR 621 (716)
T ss_pred hHHHHHhCccccccccCCccccccchHHH--HHHHHHHHhc
Confidence 012578888888876555 5777 8899999986
No 12
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=94.29 E-value=0.023 Score=52.41 Aligned_cols=99 Identities=25% Similarity=0.322 Sum_probs=56.1
Q ss_pred eeeccceEEEEEE---EeCceeEEEcCeeccccCcHHHHHHhhh----hHHhhcc-------------------------
Q 032125 14 FGRKKTAVAVTYC---KRGRGLIKINGCPIELVEPEILRFKAFE----PILLLGR------------------------- 61 (147)
Q Consensus 14 ~GrRKta~A~v~l---~~G~G~i~INg~~l~~y~~~~~r~~i~~----PL~~~~~------------------------- 61 (147)
+|-=|++...+.+ .|..|+|.|||.++.+..+..+|.++.+ |..+.++
T Consensus 356 SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~ 435 (559)
T COG4988 356 SGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAG 435 (559)
T ss_pred CCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhc
Confidence 3444554443322 3468999999999877665555544432 3322211
Q ss_pred -cc----cceeceEEEEecCccc-chHHHHHHHHHHHHHHhhhh--------cCChhhHHHHHHHhh
Q 032125 62 -HR----FNGVDMRIRVKGGGHT-SQIYAIRQSIAKALVAFYQK--------YVDEQSKKEIKDILV 114 (147)
Q Consensus 62 -~~----~~~~di~v~V~GGG~~-gQa~Air~aiAraL~~~~~~--------~~~~~~r~~Lk~~l~ 114 (147)
.. -...|-.+--.|-|+| ||++ |+|+||||+.--+- ..|.+....+...|.
T Consensus 436 l~~~v~~p~GLdt~ige~G~~LSgGQ~Q--RlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~ 500 (559)
T COG4988 436 LLEFVPKPDGLDTVIGEGGAGLSGGQAQ--RLALARALLSPASLLLLDEPTAHLDAETEQIILQALQ 500 (559)
T ss_pred HHHhhcCCCcccchhccCCCCCCHHHHH--HHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHH
Confidence 00 0245666666777777 5655 99999999864221 235555555555443
No 13
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=90.78 E-value=0.44 Score=45.20 Aligned_cols=100 Identities=24% Similarity=0.293 Sum_probs=63.0
Q ss_pred eeccceEEEEEE---EeCceeEEEcCeeccccCcHHHHHH------------------------------hhhhHHhhcc
Q 032125 15 GRKKTAVAVTYC---KRGRGLIKINGCPIELVEPEILRFK------------------------------AFEPILLLGR 61 (147)
Q Consensus 15 GrRKta~A~v~l---~~G~G~i~INg~~l~~y~~~~~r~~------------------------------i~~PL~~~~~ 61 (147)
|-=|+..++... .|-.|.|.+||.++.++-...+|+. |++-+.+++.
T Consensus 509 GsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~ 588 (709)
T COG2274 509 GSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGA 588 (709)
T ss_pred CCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCc
Confidence 344555554333 3568999999999876655444443 2222332221
Q ss_pred c-----ccceeceEEEEecCccc-chHHHHHHHHHHHHHHhhhh---------cCChhhHHHHHHHhhhcC
Q 032125 62 H-----RFNGVDMRIRVKGGGHT-SQIYAIRQSIAKALVAFYQK---------YVDEQSKKEIKDILVRYD 117 (147)
Q Consensus 62 ~-----~~~~~di~v~V~GGG~~-gQa~Air~aiAraL~~~~~~---------~~~~~~r~~Lk~~l~~yd 117 (147)
+ .-..||-.+.-.|.++| ||-+ |+||||||+. .|+ -.|++....+.+.|.+..
T Consensus 589 ~~fI~~lP~gy~t~v~E~G~~LSGGQrQ--rlalARaLl~-~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~ 656 (709)
T COG2274 589 HEFIENLPMGYDTPVGEGGANLSGGQRQ--RLALARALLS-KPKILLLDEATSALDPETEAIILQNLLQIL 656 (709)
T ss_pred HHHHHhcccccccccccCCCCCCHHHHH--HHHHHHHhcc-CCCEEEEeCcccccCHhHHHHHHHHHHHHh
Confidence 1 12478888888899988 6877 8999999984 343 235666677777766654
No 14
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=89.03 E-value=1.2 Score=41.01 Aligned_cols=51 Identities=29% Similarity=0.358 Sum_probs=32.1
Q ss_pred eeceEEEEecCccc-chHHHHHHHHHHHHHHhhhh---------cCChhhHHHHHHHhhhcCCC
Q 032125 66 GVDMRIRVKGGGHT-SQIYAIRQSIAKALVAFYQK---------YVDEQSKKEIKDILVRYDRT 119 (147)
Q Consensus 66 ~~di~v~V~GGG~~-gQa~Air~aiAraL~~~~~~---------~~~~~~r~~Lk~~l~~yd~g 119 (147)
.||-.+.-.|..+| ||.+ |+||||||+.- |. -.|++....+.+.|.+.++.
T Consensus 577 G~dt~ige~G~~LSGGQrQ--RialARAll~~-p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T 637 (686)
T TIGR03797 577 GMHTVISEGGGTLSGGQRQ--RLLIARALVRK-PRILLFDEATSALDNRTQAIVSESLERLKVT 637 (686)
T ss_pred cccccccCCCCCCCHHHHH--HHHHHHHHhcC-CCEEEEeCCccCCCHHHHHHHHHHHHHhCCe
Confidence 45655555555555 5665 99999999863 33 23666666777766665433
No 15
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=88.93 E-value=1.2 Score=41.12 Aligned_cols=52 Identities=33% Similarity=0.349 Sum_probs=32.6
Q ss_pred eeceEEEEecCccc-chHHHHHHHHHHHHHHhhhh---------cCChhhHHHHHHHhhhcCCCc
Q 032125 66 GVDMRIRVKGGGHT-SQIYAIRQSIAKALVAFYQK---------YVDEQSKKEIKDILVRYDRTL 120 (147)
Q Consensus 66 ~~di~v~V~GGG~~-gQa~Air~aiAraL~~~~~~---------~~~~~~r~~Lk~~l~~yd~gl 120 (147)
.+|-.+.-.|..+| ||.+ |+||||||+. +|. -.|+.....+-+.|.+.++..
T Consensus 604 gl~t~i~e~G~~LSGGQrQ--RiaLARall~-~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~ 665 (710)
T TIGR03796 604 GYDAELAEGGANLSGGQRQ--RLEIARALVR-NPSILILDEATSALDPETEKIIDDNLRRRGCTC 665 (710)
T ss_pred cccceeccCCCCCCHHHHH--HHHHHHHHhh-CCCEEEEECccccCCHHHHHHHHHHHHhcCCEE
Confidence 56766665666666 5655 9999999986 333 235666666666655544333
No 16
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=88.64 E-value=0.39 Score=48.77 Aligned_cols=101 Identities=21% Similarity=0.153 Sum_probs=58.5
Q ss_pred EeeeccceEEEEEEEeCceeEEEcCeeccccCcHHHHHH------------------hh------------hhHHhhccc
Q 032125 13 CFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFK------------------AF------------EPILLLGRH 62 (147)
Q Consensus 13 ~~GrRKta~A~v~l~~G~G~i~INg~~l~~y~~~~~r~~------------------i~------------~PL~~~~~~ 62 (147)
..+.++.+.-.-...|-+|.|.|||.++.+|....+|.. |. +.+...+.+
T Consensus 1259 ~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~ 1338 (1466)
T PTZ00265 1259 SLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAID 1338 (1466)
T ss_pred ccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCH
Confidence 344555554444455779999999999866543333322 21 112211110
Q ss_pred -----ccceeceEEEEecCccc-chHHHHHHHHHHHHHHhhhh---------cCChhhHHHHHHHhhhc
Q 032125 63 -----RFNGVDMRIRVKGGGHT-SQIYAIRQSIAKALVAFYQK---------YVDEQSKKEIKDILVRY 116 (147)
Q Consensus 63 -----~~~~~di~v~V~GGG~~-gQa~Air~aiAraL~~~~~~---------~~~~~~r~~Lk~~l~~y 116 (147)
.-..||-.|--+|..+| ||.+ |+||||||+. +|. -.|++....+.+.|.+.
T Consensus 1339 ~fI~~LP~GydT~VGe~G~~LSGGQkQ--RIaIARALlr-~p~ILLLDEaTSaLD~~sE~~I~~~L~~~ 1404 (1466)
T PTZ00265 1339 EFIESLPNKYDTNVGPYGKSLSGGQKQ--RIAIARALLR-EPKILLLDEATSSLDSNSEKLIEKTIVDI 1404 (1466)
T ss_pred HHHHhCccccCCccCCCCCcCCHHHHH--HHHHHHHHhc-CCCEEEEeCcccccCHHHHHHHHHHHHHH
Confidence 01466777766666666 4555 9999999986 343 13555666676666654
No 17
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=88.47 E-value=0.74 Score=41.61 Aligned_cols=47 Identities=19% Similarity=0.294 Sum_probs=30.0
Q ss_pred eeceEEEEecCcccc-hHHHHHHHHHHHHHHhhhh---------cCChhhHHHHHHHhhh
Q 032125 66 GVDMRIRVKGGGHTS-QIYAIRQSIAKALVAFYQK---------YVDEQSKKEIKDILVR 115 (147)
Q Consensus 66 ~~di~v~V~GGG~~g-Qa~Air~aiAraL~~~~~~---------~~~~~~r~~Lk~~l~~ 115 (147)
.+|-.+.-.|..+|| |.+ |++|||||+. ++. ..|++....+.+.|.+
T Consensus 465 Gldt~i~e~g~~LSGGqrQ--RialARaLl~-~~~illlDEpts~LD~~t~~~i~~~l~~ 521 (592)
T PRK10790 465 GLYTPLGEQGNNLSVGQKQ--LLALARVLVQ-TPQILILDEATANIDSGTEQAIQQALAA 521 (592)
T ss_pred cccccccCCCCCCCHHHHH--HHHHHHHHHh-CCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 567666656666664 655 9999999986 332 2355655556555544
No 18
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=86.85 E-value=0.75 Score=41.46 Aligned_cols=47 Identities=26% Similarity=0.342 Sum_probs=30.5
Q ss_pred eeceEEEEecCccc-chHHHHHHHHHHHHHHhhhh---------cCChhhHHHHHHHhhh
Q 032125 66 GVDMRIRVKGGGHT-SQIYAIRQSIAKALVAFYQK---------YVDEQSKKEIKDILVR 115 (147)
Q Consensus 66 ~~di~v~V~GGG~~-gQa~Air~aiAraL~~~~~~---------~~~~~~r~~Lk~~l~~ 115 (147)
.||-.+--+|..+| ||.+ |+||||||+. +|. -.|++....+.+.|.+
T Consensus 474 G~dT~vge~G~~LSGGQrQ--RialARAll~-~~~IliLDE~TSaLD~~te~~i~~~l~~ 530 (588)
T PRK11174 474 GLDTPIGDQAAGLSVGQAQ--RLALARALLQ-PCQLLLLDEPTASLDAHSEQLVMQALNA 530 (588)
T ss_pred ccccccccCCCCCCHHHHH--HHHHHHHHhc-CCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 56776666666676 5655 9999999986 333 2355555556555554
No 19
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.18 E-value=1.5 Score=44.17 Aligned_cols=86 Identities=27% Similarity=0.320 Sum_probs=54.3
Q ss_pred eCceeEEEcCeeccccCcHHHHHHh----hhhHHhhccc-------------------------------ccceeceEEE
Q 032125 28 RGRGLIKINGCPIELVEPEILRFKA----FEPILLLGRH-------------------------------RFNGVDMRIR 72 (147)
Q Consensus 28 ~G~G~i~INg~~l~~y~~~~~r~~i----~~PL~~~~~~-------------------------------~~~~~di~v~ 72 (147)
|-+|.|.|+|.++..+..+.+|.+| -+|+.+..+- ....||-.|-
T Consensus 405 P~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vg 484 (1228)
T KOG0055|consen 405 PTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVG 484 (1228)
T ss_pred CCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhccccc
Confidence 4579999999999998877777664 3565543210 0135665555
Q ss_pred EecCccc-chHHHHHHHHHHHHHHhhhh---------cCChhhHHHHHHHhhhc
Q 032125 73 VKGGGHT-SQIYAIRQSIAKALVAFYQK---------YVDEQSKKEIKDILVRY 116 (147)
Q Consensus 73 V~GGG~~-gQa~Air~aiAraL~~~~~~---------~~~~~~r~~Lk~~l~~y 116 (147)
-+|-=+| ||.+ |.||||||+. +|+ -.|++.+....++|...
T Consensus 485 e~g~qLSGGQKQ--RIAIARalv~-~P~ILLLDEaTSaLD~~se~~Vq~ALd~~ 535 (1228)
T KOG0055|consen 485 ERGVQLSGGQKQ--RIAIARALVR-NPKILLLDEATSALDAESERVVQEALDKA 535 (1228)
T ss_pred CCCCCCChHHHH--HHHHHHHHHh-CCCEEEecCcccccCHHHHHHHHHHHHHh
Confidence 5553344 4555 9999999995 454 23555666666665443
No 20
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.17 E-value=0.9 Score=45.64 Aligned_cols=85 Identities=29% Similarity=0.424 Sum_probs=54.7
Q ss_pred eCceeEEEcCeeccccCcHHHHHHh----hhhHHhhcc-------------------------------cccceeceEEE
Q 032125 28 RGRGLIKINGCPIELVEPEILRFKA----FEPILLLGR-------------------------------HRFNGVDMRIR 72 (147)
Q Consensus 28 ~G~G~i~INg~~l~~y~~~~~r~~i----~~PL~~~~~-------------------------------~~~~~~di~v~ 72 (147)
|-+|.|.|+|.++..+....+|.+| -||..+-++ ..-..||-.|-
T Consensus 1042 p~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vG 1121 (1228)
T KOG0055|consen 1042 PDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVG 1121 (1228)
T ss_pred CCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccC
Confidence 3479999999999888777777654 345543321 00146787777
Q ss_pred EecCccc-chHHHHHHHHHHHHHHhhhhc---------CChhhHHHHHHHhhh
Q 032125 73 VKGGGHT-SQIYAIRQSIAKALVAFYQKY---------VDEQSKKEIKDILVR 115 (147)
Q Consensus 73 V~GGG~~-gQa~Air~aiAraL~~~~~~~---------~~~~~r~~Lk~~l~~ 115 (147)
-+|.=+| ||.+ |.||||||+. +|+- .|.++...+.++|..
T Consensus 1122 erG~QLSGGQKQ--RIAIARAilR-nPkILLLDEATSALDseSErvVQeALd~ 1171 (1228)
T KOG0055|consen 1122 ERGVQLSGGQKQ--RIAIARAILR-NPKILLLDEATSALDSESERVVQEALDR 1171 (1228)
T ss_pred cccCcCCchHHH--HHHHHHHHHc-CCCeeeeeccchhhhhhhHHHHHHHHHH
Confidence 6776666 5766 9999999996 4541 234444555665544
No 21
>PLN03130 ABC transporter C family member; Provisional
Probab=84.53 E-value=1.5 Score=45.18 Aligned_cols=80 Identities=25% Similarity=0.263 Sum_probs=43.8
Q ss_pred eeccceEEEEEE---EeCceeEEEcCeeccccCcHHHHHH-----------------------------hhhhHHhhccc
Q 032125 15 GRKKTAVAVTYC---KRGRGLIKINGCPIELVEPEILRFK-----------------------------AFEPILLLGRH 62 (147)
Q Consensus 15 GrRKta~A~v~l---~~G~G~i~INg~~l~~y~~~~~r~~-----------------------------i~~PL~~~~~~ 62 (147)
|-=|++.+.+.+ .|.+|.|.|||+|+.++....+|.. +.+-+..++..
T Consensus 1275 GSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~ 1354 (1622)
T PLN03130 1275 GAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLK 1354 (1622)
T ss_pred CCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcH
Confidence 334555544333 2567999999999876543333322 22223222211
Q ss_pred c----c-ceeceEEEEecCccc-chHHHHHHHHHHHHHHh
Q 032125 63 R----F-NGVDMRIRVKGGGHT-SQIYAIRQSIAKALVAF 96 (147)
Q Consensus 63 ~----~-~~~di~v~V~GGG~~-gQa~Air~aiAraL~~~ 96 (147)
. + ..+|-.|.-.|.-+| ||.+ |++|||||+.-
T Consensus 1355 ~~I~~lp~GLdt~Vge~G~nLSgGQrQ--rlaLARALLr~ 1392 (1622)
T PLN03130 1355 DVIRRNSLGLDAEVSEAGENFSVGQRQ--LLSLARALLRR 1392 (1622)
T ss_pred HHHHhCccccCccccCCCCCCCHHHHH--HHHHHHHHHcC
Confidence 0 1 356655544444444 4555 99999999963
No 22
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=84.37 E-value=1 Score=42.07 Aligned_cols=28 Identities=39% Similarity=0.483 Sum_probs=18.7
Q ss_pred eeceEEEEecCccc-chHHHHHHHHHHHHHH
Q 032125 66 GVDMRIRVKGGGHT-SQIYAIRQSIAKALVA 95 (147)
Q Consensus 66 ~~di~v~V~GGG~~-gQa~Air~aiAraL~~ 95 (147)
.+|..+.-.|.-+| ||.+ |+||||||+.
T Consensus 606 GldT~ige~G~~LSGGQkQ--RlalARALl~ 634 (711)
T TIGR00958 606 GYDTEVGEKGSQLSGGQKQ--RIAIARALVR 634 (711)
T ss_pred ccCCcccCCCCcCCHHHHH--HHHHHHHHhc
Confidence 46665554444454 4544 9999999986
No 23
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=83.47 E-value=0.38 Score=40.84 Aligned_cols=80 Identities=24% Similarity=0.199 Sum_probs=52.5
Q ss_pred EeEeeeccceEEEEEEE---eCceeEEEcCeeccccCcHHHHHHhhhhHHhhcc--cccceeceEEEEecCcccchHHHH
Q 032125 11 VQCFGRKKTAVAVTYCK---RGRGLIKINGCPIELVEPEILRFKAFEPILLLGR--HRFNGVDMRIRVKGGGHTSQIYAI 85 (147)
Q Consensus 11 ~~~~GrRKta~A~v~l~---~G~G~i~INg~~l~~y~~~~~r~~i~~PL~~~~~--~~~~~~di~v~V~GGG~~gQa~Ai 85 (147)
|--+|.=|+..+++.+. |-+|.|..+|+++..+.....++.+.+=|..++. +.+..|+-.. .| ||-+
T Consensus 45 VGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhel--SG----GQrQ-- 116 (268)
T COG4608 45 VGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHEL--SG----GQRQ-- 116 (268)
T ss_pred EecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCccc--Cc----hhhh--
Confidence 33456667777766553 5789999999998776654455567776766552 2345566443 23 4555
Q ss_pred HHHHHHHHHHhhhh
Q 032125 86 RQSIAKALVAFYQK 99 (147)
Q Consensus 86 r~aiAraL~~~~~~ 99 (147)
|.+|||||. .+|+
T Consensus 117 Ri~IARALa-l~P~ 129 (268)
T COG4608 117 RIGIARALA-LNPK 129 (268)
T ss_pred hHHHHHHHh-hCCc
Confidence 999999997 4555
No 24
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=81.84 E-value=4.6 Score=38.80 Aligned_cols=69 Identities=20% Similarity=0.310 Sum_probs=41.0
Q ss_pred EEEEEeCceeEEEcCeeccccCcHHHHHHhhhhHHh-------h--cccccceeceEEEEecCcccchHHHHHHHHHHHH
Q 032125 23 VTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILL-------L--GRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKAL 93 (147)
Q Consensus 23 ~v~l~~G~G~i~INg~~l~~y~~~~~r~~i~~PL~~-------~--~~~~~~~~di~v~V~GGG~~gQa~Air~aiAraL 93 (147)
.+...+|+|++.++|. +.+...+ .+...+.. + +.+.+.++||++.|-||....---++-+|++-||
T Consensus 614 E~~~~~g~g~~~~tG~-lg~vmke----s~~~A~~~~~~~~~~~~~~~~~~~~~Di~i~v~~g~~~~dgpsagla~~~Al 688 (784)
T PRK10787 614 ETACVPGKGKLTYTGS-LGEVMQE----SIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPSAGIAMCTAL 688 (784)
T ss_pred EEEEecCCceEEEecC-cHHHHHH----HHHHHHHHHHHHHHHcCCCcccccCceEEEEecCCCCCCCCCchHHHHHHHH
Confidence 3445689999999994 4332221 11111111 1 1223468899999999877644345566777777
Q ss_pred HHh
Q 032125 94 VAF 96 (147)
Q Consensus 94 ~~~ 96 (147)
+..
T Consensus 689 ~S~ 691 (784)
T PRK10787 689 VSC 691 (784)
T ss_pred HHH
Confidence 654
No 25
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=81.80 E-value=2.2 Score=38.48 Aligned_cols=98 Identities=24% Similarity=0.300 Sum_probs=53.1
Q ss_pred eeccceEEEEEEE---eCceeEEEcCeeccccCcHHHHHHhh----hh--------------------------HHhhcc
Q 032125 15 GRKKTAVAVTYCK---RGRGLIKINGCPIELVEPEILRFKAF----EP--------------------------ILLLGR 61 (147)
Q Consensus 15 GrRKta~A~v~l~---~G~G~i~INg~~l~~y~~~~~r~~i~----~P--------------------------L~~~~~ 61 (147)
|-=|+..++..+. |-+|.|.|||.++.++..+.+|..|- .| +...+.
T Consensus 365 GsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~ 444 (567)
T COG1132 365 GSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANA 444 (567)
T ss_pred CCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhCh
Confidence 3345555533332 45899999999988766555554432 12 221110
Q ss_pred c----cc-ceeceEEEEecCcccchHHHHHHHHHHHHHHhhhh--------cCChhhHHHHHHHh
Q 032125 62 H----RF-NGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQK--------YVDEQSKKEIKDIL 113 (147)
Q Consensus 62 ~----~~-~~~di~v~V~GGG~~gQa~Air~aiAraL~~~~~~--------~~~~~~r~~Lk~~l 113 (147)
+ .+ +.||-.|.-+|..+| .=+--|++|||||+.--+- ..|.+....+.+.+
T Consensus 445 ~d~I~~lp~g~dt~vge~G~~LS-gGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l 508 (567)
T COG1132 445 HEFIANLPDGYDTIVGERGVNLS-GGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDAL 508 (567)
T ss_pred HHHHHhCcccccceecCCCccCC-HHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHH
Confidence 0 01 247777663444444 3334499999999863211 23555555555554
No 26
>PLN03232 ABC transporter C family member; Provisional
Probab=80.98 E-value=2.6 Score=42.89 Aligned_cols=77 Identities=21% Similarity=0.268 Sum_probs=43.9
Q ss_pred ccceEEEEEE---EeCceeEEEcCeeccccCcHH------------------HHH-----------HhhhhHHhhcccc-
Q 032125 17 KKTAVAVTYC---KRGRGLIKINGCPIELVEPEI------------------LRF-----------KAFEPILLLGRHR- 63 (147)
Q Consensus 17 RKta~A~v~l---~~G~G~i~INg~~l~~y~~~~------------------~r~-----------~i~~PL~~~~~~~- 63 (147)
=|++.+.+.+ .|-+|.|.|||+|+.++.... .|+ .+.+.+..++...
T Consensus 1274 GKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~ 1353 (1495)
T PLN03232 1274 GKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDV 1353 (1495)
T ss_pred CHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHH
Confidence 4555544333 256799999999986543222 222 2223333322110
Q ss_pred ----cceeceEEEEecCccc-chHHHHHHHHHHHHHH
Q 032125 64 ----FNGVDMRIRVKGGGHT-SQIYAIRQSIAKALVA 95 (147)
Q Consensus 64 ----~~~~di~v~V~GGG~~-gQa~Air~aiAraL~~ 95 (147)
-..+|-.+.-.|..+| ||-+ |++|||||+.
T Consensus 1354 I~~lp~GLdt~v~e~G~~LSgGQrQ--rlaLARALLr 1388 (1495)
T PLN03232 1354 IDRNPFGLDAEVSEGGENFSVGQRQ--LLSLARALLR 1388 (1495)
T ss_pred HHhCcCCCCceecCCCCCCCHHHHH--HHHHHHHHHh
Confidence 1356766655565666 4666 9999999996
No 27
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=80.91 E-value=3.7 Score=36.49 Aligned_cols=49 Identities=22% Similarity=0.307 Sum_probs=32.2
Q ss_pred ceeceEEEEecCccc-chHHHHHHHHHHHHHHhhhh---------cCChhhHHHHHHHhhhc
Q 032125 65 NGVDMRIRVKGGGHT-SQIYAIRQSIAKALVAFYQK---------YVDEQSKKEIKDILVRY 116 (147)
Q Consensus 65 ~~~di~v~V~GGG~~-gQa~Air~aiAraL~~~~~~---------~~~~~~r~~Lk~~l~~y 116 (147)
+.+|-.+--+|..+| ||.+ |+||||||+.- |. -.|++....+.+.|.+.
T Consensus 458 ~GldT~ige~G~~LSGGQrQ--RiaiARall~~-~~iliLDE~TSaLD~~te~~I~~~l~~~ 516 (529)
T TIGR02868 458 DGLDTVLGEGGARLSGGERQ--RLALARALLAD-APILLLDEPTEHLDAGTESELLEDLLAA 516 (529)
T ss_pred ccccchhccccCcCCHHHHH--HHHHHHHHhcC-CCEEEEeCCcccCCHHHHHHHHHHHHHh
Confidence 356766655565566 4555 99999999863 32 24666667777766654
No 28
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=78.20 E-value=2.6 Score=43.07 Aligned_cols=30 Identities=20% Similarity=0.173 Sum_probs=21.0
Q ss_pred ceeceEEEEecCccc-chHHHHHHHHHHHHHHh
Q 032125 65 NGVDMRIRVKGGGHT-SQIYAIRQSIAKALVAF 96 (147)
Q Consensus 65 ~~~di~v~V~GGG~~-gQa~Air~aiAraL~~~ 96 (147)
+.+|-.+.-.|..+| ||-+ |++|||||+.-
T Consensus 1409 ~GLdt~v~e~G~~LSgGQrQ--rl~LARALLr~ 1439 (1522)
T TIGR00957 1409 DKLDHECAEGGENLSVGQRQ--LVCLARALLRK 1439 (1522)
T ss_pred cCCCceecCCCCcCCHHHHH--HHHHHHHHHcC
Confidence 356666655565666 4666 99999999963
No 29
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=77.26 E-value=0.86 Score=38.42 Aligned_cols=28 Identities=29% Similarity=0.445 Sum_probs=20.7
Q ss_pred eeeccceEEEEEE---EeCceeEEEcCeecc
Q 032125 14 FGRKKTAVAVTYC---KRGRGLIKINGCPIE 41 (147)
Q Consensus 14 ~GrRKta~A~v~l---~~G~G~i~INg~~l~ 41 (147)
+|.=|++.+++.+ .|-+|.|.++|+++.
T Consensus 42 SGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~ 72 (252)
T COG1124 42 SGSGKSTLARLLAGLEKPSSGSILLDGKPLA 72 (252)
T ss_pred CCCCHHHHHHHHhcccCCCCceEEECCcccC
Confidence 5667888776644 477899999996543
No 30
>COG1750 Archaeal serine proteases [General function prediction only]
Probab=74.39 E-value=6.6 Score=36.77 Aligned_cols=72 Identities=21% Similarity=0.267 Sum_probs=53.3
Q ss_pred EEEEEeCceeEEEcCeecccc-CcHHHHHHhhhhHHhhcccccceeceEEEEec-----CcccchHHHHHHHHHHHHHHh
Q 032125 23 VTYCKRGRGLIKINGCPIELV-EPEILRFKAFEPILLLGRHRFNGVDMRIRVKG-----GGHTSQIYAIRQSIAKALVAF 96 (147)
Q Consensus 23 ~v~l~~G~G~i~INg~~l~~y-~~~~~r~~i~~PL~~~~~~~~~~~di~v~V~G-----GG~~gQa~Air~aiAraL~~~ 96 (147)
.|.+.||+|.+.|-+-|+.+. +....|.....-+.++|.+ +.+||+++.|+- ||+|+- +++-.|+=-+|..|
T Consensus 55 ~vtv~pG~G~v~v~t~P~t~~d~~~SArvAa~~A~~~~Gvd-~ssyd~~i~v~a~~pVVGgPSag-g~mtva~~~~~~~~ 132 (579)
T COG1750 55 SVTVTPGDGRVYVATFPYTQIDMQGSARVAAGVALRLAGVD-MSSYDVYIAVEADSPVVGGPSAG-GYMTVAIYAALMGW 132 (579)
T ss_pred eeeecCCCceEEeecCCCchhccchhhHHHHHHHHHhhCCC-ccceeEEEEEecCCCeecCcccc-hHhHHHHHHHHhCC
Confidence 455579999999999999876 5556677788889999987 599999999974 444432 35556665666555
No 31
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=74.27 E-value=4.4 Score=33.55 Aligned_cols=17 Identities=29% Similarity=0.368 Sum_probs=13.2
Q ss_pred EEEeCceeEEEcCeecc
Q 032125 25 YCKRGRGLIKINGCPIE 41 (147)
Q Consensus 25 ~l~~G~G~i~INg~~l~ 41 (147)
+..|.+|.|.|||++..
T Consensus 48 F~~P~~G~i~i~g~d~t 64 (231)
T COG3840 48 FETPASGEILINGVDHT 64 (231)
T ss_pred ccCCCCceEEEcCeecC
Confidence 34578999999998653
No 32
>PF13541 ChlI: Subunit ChlI of Mg-chelatase
Probab=73.25 E-value=9.6 Score=28.38 Aligned_cols=71 Identities=20% Similarity=0.178 Sum_probs=51.9
Q ss_pred EEEEeCceeEEEcCeeccccCcHHHHHHhhhhHHhhcccccceeceEEEEecCcccchHHHHHHHHHHHHHHhh
Q 032125 24 TYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFY 97 (147)
Q Consensus 24 v~l~~G~G~i~INg~~l~~y~~~~~r~~i~~PL~~~~~~~~~~~di~v~V~GGG~~gQa~Air~aiAraL~~~~ 97 (147)
|.+.+|--.+.|-|.|-... ...++.|..-|.-++.. +...||+|++.+||+.=+--+.-+|||-||+.-+
T Consensus 3 v~~~~Glp~~~ivGl~~~av--~esr~Rv~~al~~~g~~-~p~~~i~VNlap~~l~k~g~~~DLaIA~ailsa~ 73 (121)
T PF13541_consen 3 VDISRGLPSFNIVGLPDTAV--KESRERVRSALKNSGFP-FPNQDITVNLAPADLKKEGPAFDLAIAIAILSAF 73 (121)
T ss_pred EEEcCCCCceEEecCchHHH--HHHHHHHHHHHHhcCCC-CCcceeeeEEEeCCEEEeeeeehHHHHHHHHHhC
Confidence 34445544577777664433 22456677777777764 6889999999999999888899999999998753
No 33
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=71.90 E-value=7.7 Score=34.08 Aligned_cols=14 Identities=29% Similarity=0.401 Sum_probs=11.2
Q ss_pred eCceeEEEcCeecc
Q 032125 28 RGRGLIKINGCPIE 41 (147)
Q Consensus 28 ~G~G~i~INg~~l~ 41 (147)
|.+|.|.+||+++.
T Consensus 57 p~~G~I~l~G~~i~ 70 (352)
T COG3842 57 PSSGEILLDGEDIT 70 (352)
T ss_pred CCCceEEECCEECC
Confidence 45799999998764
No 34
>PTZ00243 ABC transporter; Provisional
Probab=71.04 E-value=7 Score=40.21 Aligned_cols=28 Identities=29% Similarity=0.401 Sum_probs=17.9
Q ss_pred eeceEEEEecCccc-chHHHHHHHHHHHHHH
Q 032125 66 GVDMRIRVKGGGHT-SQIYAIRQSIAKALVA 95 (147)
Q Consensus 66 ~~di~v~V~GGG~~-gQa~Air~aiAraL~~ 95 (147)
.+|-.+.-.|.-+| ||-+ |++|||||+.
T Consensus 1434 Gldt~vge~G~nLSgGQrQ--rLaLARALL~ 1462 (1560)
T PTZ00243 1434 GIDSRVLEGGSNYSVGQRQ--LMCMARALLK 1462 (1560)
T ss_pred cccccccCCcCcCCHHHHH--HHHHHHHHhc
Confidence 35544443333344 6666 9999999996
No 35
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=70.41 E-value=7 Score=39.96 Aligned_cols=30 Identities=10% Similarity=0.102 Sum_probs=20.3
Q ss_pred ceeceEEEEecCccc-chHHHHHHHHHHHHHHh
Q 032125 65 NGVDMRIRVKGGGHT-SQIYAIRQSIAKALVAF 96 (147)
Q Consensus 65 ~~~di~v~V~GGG~~-gQa~Air~aiAraL~~~ 96 (147)
+.+|..|.-.|..+| ||.+ +++|||||+.-
T Consensus 1341 ~GLdt~v~e~G~nLSgGQrQ--rL~LARALLr~ 1371 (1490)
T TIGR01271 1341 DKLDFVLVDGGYVLSNGHKQ--LMCLARSILSK 1371 (1490)
T ss_pred cccccccccCCCcCCHHHHH--HHHHHHHHhCC
Confidence 356666655454555 4555 99999999863
No 36
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=65.14 E-value=13 Score=35.46 Aligned_cols=74 Identities=18% Similarity=0.183 Sum_probs=43.4
Q ss_pred EEEEEeCceeEEEcCeeccccCcHHHH--HHhhhhHHhhcc--cccceeceEEEEecCcccchHHHHHHHHHHHHHHh
Q 032125 23 VTYCKRGRGLIKINGCPIELVEPEILR--FKAFEPILLLGR--HRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAF 96 (147)
Q Consensus 23 ~v~l~~G~G~i~INg~~l~~y~~~~~r--~~i~~PL~~~~~--~~~~~~di~v~V~GGG~~gQa~Air~aiAraL~~~ 96 (147)
.|.+.+|.|.+.|.|.+-........+ .-+..-+.-.+. +.+.++||+|++-+|.....--+.=+|||-||+..
T Consensus 618 E~~~~~G~~~~~~tG~~~~~~kES~~~a~~~v~~~~~~~~~~~~~~~~~di~v~~~~g~~~k~Gpsa~laia~al~sa 695 (775)
T TIGR00763 618 ETTKVAGKGSLELTGQLGDVMKESAQIALTYVRSIAADLGISPNFFEKADIHLHVPEGATPKDGPSAGITMATALLSL 695 (775)
T ss_pred EEEEeCCCceEEEeCCchHHHHHHHHHHHHHHHHHHHHcCCCccccCCeEEEEEcCCcccCCCCCcchHHHHHHHHHH
Confidence 344458999999999654444321111 112222222222 12467899999999877755455567777777665
No 37
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=63.68 E-value=17 Score=27.59 Aligned_cols=81 Identities=23% Similarity=0.187 Sum_probs=44.2
Q ss_pred eCceeEEEcCeeccccCcHHHHHHhhh---hHHhhcccccceeceEEEEecCcccchHHHHHHHHHHHHHHhhhh-----
Q 032125 28 RGRGLIKINGCPIELVEPEILRFKAFE---PILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQK----- 99 (147)
Q Consensus 28 ~G~G~i~INg~~l~~y~~~~~r~~i~~---PL~~~~~~~~~~~di~v~V~GGG~~gQa~Air~aiAraL~~~~~~----- 99 (147)
|-+|.|.+||.++..+.+...+..+-. -+..++.+ ...+ .. ....+.-+.-|++|||||+. .|.
T Consensus 51 ~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~--~~~~----~~-~~~LS~G~~qrl~laral~~-~p~llllD 122 (180)
T cd03214 51 PSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLA--HLAD----RP-FNELSGGERQRVLLARALAQ-EPPILLLD 122 (180)
T ss_pred CCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCH--hHhc----CC-cccCCHHHHHHHHHHHHHhc-CCCEEEEe
Confidence 457999999999876544332222211 12222221 1111 11 22233334679999999985 343
Q ss_pred ----cCChhhHHHHHHHhhhc
Q 032125 100 ----YVDEQSKKEIKDILVRY 116 (147)
Q Consensus 100 ----~~~~~~r~~Lk~~l~~y 116 (147)
-.|+..+..+.+.|.++
T Consensus 123 EP~~~LD~~~~~~~~~~l~~~ 143 (180)
T cd03214 123 EPTSHLDIAHQIELLELLRRL 143 (180)
T ss_pred CCccCCCHHHHHHHHHHHHHH
Confidence 24666777777766654
No 38
>PF03755 YicC_N: YicC-like family, N-terminal region ; InterPro: IPR013527 Proteins in this entry are homologues of YicC (P23839 from SWISSPROT) from Escherichia coli. Although it is relatively poorly characterised YicC has been shown to be important for cells in the stationary phase, and essential for growth at high temperatures []. This domain is found at the N-terminal region of these proteins.
Probab=60.40 E-value=30 Score=26.46 Aligned_cols=79 Identities=23% Similarity=0.249 Sum_probs=44.6
Q ss_pred CeEeEeeeccceEEEEEEEeCceeEE-----EcCeeccccC--cHHHH--H-HhhhhHHhhcccccceeceEEEEecCcc
Q 032125 9 ESVQCFGRKKTAVAVTYCKRGRGLIK-----INGCPIELVE--PEILR--F-KAFEPILLLGRHRFNGVDMRIRVKGGGH 78 (147)
Q Consensus 9 ~~~~~~GrRKta~A~v~l~~G~G~i~-----INg~~l~~y~--~~~~r--~-~i~~PL~~~~~~~~~~~di~v~V~GGG~ 78 (147)
+|+.++|+ +....+.+.|. ||++-++..+ |..++ + .|-.-+. -.. .-+++||.|+++..+.
T Consensus 2 ~SMTGfgr-------~~~~~~~~~~~vEikSvN~R~Ldi~~rlP~~l~~lE~~ir~~i~-~~l-~RGkV~v~i~~~~~~~ 72 (159)
T PF03755_consen 2 KSMTGFGR-------AEAETDGGSISVEIKSVNHRFLDISIRLPRELSSLEPEIRKLIR-KKL-SRGKVEVSIRVERSSE 72 (159)
T ss_pred cCcCCCce-------eEEecCCeEEEEEEEecccCceeeEEeCCHHHHHHHHHHHHHHH-Hhc-ccceEEEEEEEEECcc
Confidence 34555554 33334445544 6998887643 43322 1 1111111 111 1389999999998886
Q ss_pred cchHHHHHHHHHHHHHHh
Q 032125 79 TSQIYAIRQSIAKALVAF 96 (147)
Q Consensus 79 ~gQa~Air~aiAraL~~~ 96 (147)
+...-.|-.++++++...
T Consensus 73 ~~~~~~in~~l~~~y~~~ 90 (159)
T PF03755_consen 73 SAVELRINEELAKAYYEA 90 (159)
T ss_pred cCCCcccCHHHHHHHHHH
Confidence 666666666666666554
No 39
>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=59.44 E-value=9.6 Score=32.70 Aligned_cols=32 Identities=25% Similarity=0.168 Sum_probs=27.8
Q ss_pred ceeceEEEEecCcccchHHHHHHHHHHHHHHh
Q 032125 65 NGVDMRIRVKGGGHTSQIYAIRQSIAKALVAF 96 (147)
Q Consensus 65 ~~~di~v~V~GGG~~gQa~Air~aiAraL~~~ 96 (147)
.+|-+.+.|-+=|++||.+|.+||-|-+=+.|
T Consensus 273 ~~ftlRC~~Cq~glvGq~ea~eHA~~TGH~nF 304 (307)
T KOG3288|consen 273 AKFTLRCMVCQMGLVGQKEAAEHAKATGHVNF 304 (307)
T ss_pred cceEEEeeecccceeeHHHHHHHHHhcCCCcc
Confidence 68999999999999999999999988664443
No 40
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=55.52 E-value=21 Score=32.06 Aligned_cols=47 Identities=21% Similarity=0.265 Sum_probs=36.1
Q ss_pred HHHhhhhH--HhhcccccceeceEEEEecCcccchHHHHHHHHHHHHHHhh
Q 032125 49 RFKAFEPI--LLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFY 97 (147)
Q Consensus 49 r~~i~~PL--~~~~~~~~~~~di~v~V~GGG~~gQa~Air~aiAraL~~~~ 97 (147)
|..++..+ .-.+.. +...||+|++- ||+-=+--|.=+|||-||+.-.
T Consensus 337 r~~~~~Avl~k~~g~~-~~~~di~vNl~-ggl~~~~~~~DLaia~ailss~ 385 (454)
T TIGR00416 337 RLALLLAVLEKRLGLP-LADQDVFLNVA-GGVKVSEPAADLALLIAIVSSF 385 (454)
T ss_pred HHHHHHHHHHHhcCCC-CCCceEEEEcc-CCcccCCccccHHHHHHHHHhC
Confidence 66666666 555653 68999999999 7777777788899998988753
No 41
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=55.12 E-value=20 Score=33.35 Aligned_cols=62 Identities=18% Similarity=0.378 Sum_probs=40.4
Q ss_pred eCceeEEEcCeeccccCcHHHHHHhhhhHH----hhcccccceeceEEEEecCcccchHHHHHHHHHHHHHHh
Q 032125 28 RGRGLIKINGCPIELVEPEILRFKAFEPIL----LLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAF 96 (147)
Q Consensus 28 ~G~G~i~INg~~l~~y~~~~~r~~i~~PL~----~~~~~~~~~~di~v~V~GGG~~gQa~Air~aiAraL~~~ 96 (147)
||.|.+..+|....+ .++.|..-+. .++.+ +..+||+|++-||+ --.--++-+|||-||+..
T Consensus 474 pg~~~vgl~~~~~~e-----~kerv~~A~~~l~~~~g~~-~~~~di~vnl~~~~-~k~gpsadLaia~ailSa 539 (615)
T TIGR02903 474 PGKGTVRFNDTAGSM-----AKDSVFNAASVIRKITGKD-LSNYDIHVNVIGGG-RIDGPSAGAAITLCMISA 539 (615)
T ss_pred CCCceEeeCCcchHH-----HHHHHHHHHHHHHHhCCCC-CCCeeEEEEcCCCC-CCCCchHHHHHHHHHHHh
Confidence 566666666644333 3444544454 45543 68999999999877 455556777888887765
No 42
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=49.80 E-value=15 Score=30.74 Aligned_cols=50 Identities=18% Similarity=0.267 Sum_probs=31.8
Q ss_pred HHHHHhhhhHHhhcccc-cceeceEEEEecCcccchHHH-HHHHHHHHHHHh
Q 032125 47 ILRFKAFEPILLLGRHR-FNGVDMRIRVKGGGHTSQIYA-IRQSIAKALVAF 96 (147)
Q Consensus 47 ~~r~~i~~PL~~~~~~~-~~~~di~v~V~GGG~~gQa~A-ir~aiAraL~~~ 96 (147)
..-..|..-|...+... ...||+.|.++|||-..--.+ =-..+||||..+
T Consensus 55 ~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~e~varai~~~ 106 (319)
T PF02601_consen 55 GAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFNDEEVARAIAAS 106 (319)
T ss_pred chHHHHHHHHHHHHhccccccccEEEEecCCCChHHhcccChHHHHHHHHhC
Confidence 34456777777765321 127999999999996543333 245667777665
No 43
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=49.41 E-value=38 Score=25.37 Aligned_cols=34 Identities=15% Similarity=0.110 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHhhhh---------cCChhhHHHHHHHhhhc
Q 032125 82 IYAIRQSIAKALVAFYQK---------YVDEQSKKEIKDILVRY 116 (147)
Q Consensus 82 a~Air~aiAraL~~~~~~---------~~~~~~r~~Lk~~l~~y 116 (147)
-+.-|++|||||+. .|+ ..|+..+..+.+.|.++
T Consensus 86 G~~qrl~laral~~-~p~illlDEP~~~LD~~~~~~l~~~l~~~ 128 (163)
T cd03216 86 GERQMVEIARALAR-NARLLILDEPTAALTPAEVERLFKVIRRL 128 (163)
T ss_pred HHHHHHHHHHHHhc-CCCEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence 34679999999986 343 24677788888777665
No 44
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=47.28 E-value=15 Score=31.79 Aligned_cols=20 Identities=30% Similarity=0.418 Sum_probs=15.8
Q ss_pred EEeCceeEEEcCeeccccCc
Q 032125 26 CKRGRGLIKINGCPIELVEP 45 (147)
Q Consensus 26 l~~G~G~i~INg~~l~~y~~ 45 (147)
+.|.+|.|.|||+++.++-+
T Consensus 51 iept~G~I~i~g~~i~~~d~ 70 (309)
T COG1125 51 IEPTSGEILIDGEDISDLDP 70 (309)
T ss_pred cCCCCceEEECCeecccCCH
Confidence 34668999999999987654
No 45
>TIGR02653 Lon_rel_chp conserved hypothetical protein. This model describes a protein family of unknown function, about 690 residues in length, in which some members show C-terminal sequence similarity to Pfam model pfam05362, which is the Lon protease C-terminal proteolytic domain, from MEROPS family S16. However, the annotated catalytic sites of E. coli Lon protease are not conserved in members of this family. Members have a motif GP[RK][GS]TGKS, similar to the ATP-binding P-loop motif GxxGxGK[ST].
Probab=47.21 E-value=48 Score=31.76 Aligned_cols=88 Identities=17% Similarity=0.150 Sum_probs=49.7
Q ss_pred CCCCeEeEeeec---cceE--EEEEEEeCceeEEEcCeeccccCcH-------HHHHHhhhhHHhhcccccceeceEEEE
Q 032125 6 PKTESVQCFGRK---KTAV--AVTYCKRGRGLIKINGCPIELVEPE-------ILRFKAFEPILLLGRHRFNGVDMRIRV 73 (147)
Q Consensus 6 ~~~~~~~~~GrR---Kta~--A~v~l~~G~G~i~INg~~l~~y~~~-------~~r~~i~~PL~~~~~~~~~~~di~v~V 73 (147)
+.++.+++.+-= .... -.+.+.+|+|++.++|..+.....+ +.+. -..-|.+ +. .+.+.||++-|
T Consensus 493 ~~pGvv~GLA~t~~Gg~~Ly~IE~~~~~G~Gkl~lTG~~lg~vmKESa~~A~sy~ks-~a~~l~~-~~-~~~~~DiHIHv 569 (675)
T TIGR02653 493 PKPGVVYAVTQNESGKVGLYRFEVQVSAGSGKHSVSGLGSNTTAKESIRVAFDYFKG-NLVRISA-SA-KFSEHDYHLHV 569 (675)
T ss_pred CCCeEEEEEEEcCCCCeEEEEEEEEEeCCCCceeeccCCchHHHHHHHHHHHHHHHH-hHHhcCC-Cc-ccCcceEEEEC
Confidence 345556554332 2221 3455679999999999555432211 1111 1111221 11 36789999999
Q ss_pred ecCcccchHHHHHHHHHHHHHHh
Q 032125 74 KGGGHTSQIYAIRQSIAKALVAF 96 (147)
Q Consensus 74 ~GGG~~gQa~Air~aiAraL~~~ 96 (147)
--|...+-.-.+-+|++-|||..
T Consensus 570 pega~pkdGpSAGia~~~AL~Sa 592 (675)
T TIGR02653 570 VDLHNTGPSTEASLAALIALCSA 592 (675)
T ss_pred CCCCCCCCCchhHHHHHHHHHHH
Confidence 87766666556666666677654
No 46
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=45.75 E-value=26 Score=31.39 Aligned_cols=58 Identities=17% Similarity=0.027 Sum_probs=31.3
Q ss_pred eEEEcCeeccc-cCc-HHHHHHhhhhHHhhccc-ccceeceEEEEecCcccchHHHHHHHH
Q 032125 32 LIKINGCPIEL-VEP-EILRFKAFEPILLLGRH-RFNGVDMRIRVKGGGHTSQIYAIRQSI 89 (147)
Q Consensus 32 ~i~INg~~l~~-y~~-~~~r~~i~~PL~~~~~~-~~~~~di~v~V~GGG~~gQa~Air~ai 89 (147)
.+.||+..+.. -.+ +.+.+.+..|....... .-...+.++.|=|||..|-+-|+.++-
T Consensus 172 ~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGgGpaGl~aA~~la~ 232 (517)
T PRK15317 172 TVFLNGEEFGQGRMTLEEILAKLDTGAAARAAEELNAKDPYDVLVVGGGPAGAAAAIYAAR 232 (517)
T ss_pred EEEECCcEEEecCCCHHHHHHHHhccccccchhhcccCCCCCEEEECCCHHHHHHHHHHHH
Confidence 36778875533 112 23444455443211100 012334557777999999998877753
No 47
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=44.07 E-value=25 Score=31.55 Aligned_cols=24 Identities=25% Similarity=0.192 Sum_probs=18.8
Q ss_pred eeceEEEEecCcccchHHHHHHHH
Q 032125 66 GVDMRIRVKGGGHTSQIYAIRQSI 89 (147)
Q Consensus 66 ~~di~v~V~GGG~~gQa~Air~ai 89 (147)
..+.++.|=|||..|-+-|+.++-
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~ 233 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAAR 233 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHH
Confidence 445557788999999998887765
No 48
>PF05362 Lon_C: Lon protease (S16) C-terminal proteolytic domain; InterPro: IPR008269 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature defines the C-terminal proteolytic domain of the archael, bacterial and eukaryotic Lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (Lon protease family, clan SF). In the eukaryotes the majority of the proteins are located in the mitochondrial matrix [, ]. In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response [].; GO: 0004176 ATP-dependent peptidase activity, 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1Z0E_E 1Z0G_E 1Z0T_F 1Z0C_A 1Z0V_A 1Z0B_A 1Z0W_A 2KJP_A 2X36_F 3K1J_B ....
Probab=41.81 E-value=52 Score=26.55 Aligned_cols=54 Identities=19% Similarity=0.274 Sum_probs=28.1
Q ss_pred EEEEEeCceeEEEcCeeccccCcHH--HHH---HhhhhHHhhcccccceeceEEEEecCc
Q 032125 23 VTYCKRGRGLIKINGCPIELVEPEI--LRF---KAFEPILLLGRHRFNGVDMRIRVKGGG 77 (147)
Q Consensus 23 ~v~l~~G~G~i~INg~~l~~y~~~~--~r~---~i~~PL~~~~~~~~~~~di~v~V~GGG 77 (147)
.+.+.+|+|++.+.|.--+.+.... ... ..+.-+.. +.+.+.++||++.+..|+
T Consensus 46 E~~~~~G~G~l~~tG~lg~v~kES~~~A~~~~k~~~~~~~~-~~~~~~~~dihi~~~~~~ 104 (204)
T PF05362_consen 46 EAQVIPGKGKLIITGNLGDVMKESAKIAFSYLKANLKRIGI-DPSNFDNYDIHIHVPDGA 104 (204)
T ss_dssp EEEEEESSSEEEEESSBHHHHHHHHHHHHHHHHHHHHCCSS-TCCHHGCEEEEEEESSTT
T ss_pred EEeeccCcceeEeecccchhHHHHHHHHHHHHHhhhccccc-ccccccceeEEEeccccc
Confidence 4556689999999986433222111 011 11111111 122346889999997543
No 49
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=39.81 E-value=36 Score=25.70 Aligned_cols=34 Identities=12% Similarity=0.169 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHhhhh---------cCChhhHHHHHHHhhhc
Q 032125 82 IYAIRQSIAKALVAFYQK---------YVDEQSKKEIKDILVRY 116 (147)
Q Consensus 82 a~Air~aiAraL~~~~~~---------~~~~~~r~~Lk~~l~~y 116 (147)
-+.-|.+|||||+. .|. -.|+..+..+.+.|.++
T Consensus 102 G~~qrv~laral~~-~p~~lllDEP~~~LD~~~~~~l~~~l~~~ 144 (178)
T cd03247 102 GERQRLALARILLQ-DAPIVLLDEPTVGLDPITERQLLSLIFEV 144 (178)
T ss_pred HHHHHHHHHHHHhc-CCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 35679999999985 333 24666677777766654
No 50
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=37.72 E-value=25 Score=29.59 Aligned_cols=41 Identities=22% Similarity=0.426 Sum_probs=30.2
Q ss_pred eCceeEEEcCeeccccCcHHHHHHhhhhHHhhcccccceeceEEEEe
Q 032125 28 RGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVK 74 (147)
Q Consensus 28 ~G~G~i~INg~~l~~y~~~~~r~~i~~PL~~~~~~~~~~~di~v~V~ 74 (147)
..+|+|.|+|.++..|....+- .-|.++..+ +.++...+|+
T Consensus 53 ~d~G~i~i~g~~~~~~~s~~LA----k~lSILkQ~--N~i~~rlTV~ 93 (252)
T COG4604 53 KDSGEITIDGLELTSTPSKELA----KKLSILKQE--NHINSRLTVR 93 (252)
T ss_pred ccCceEEEeeeecccCChHHHH----HHHHHHHhh--chhhheeEHH
Confidence 4589999999999999874322 225666666 6888888884
No 51
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=34.86 E-value=37 Score=29.89 Aligned_cols=46 Identities=22% Similarity=0.311 Sum_probs=27.3
Q ss_pred HHHHhhhhHHhhcccccceeceEEEEecCcccchHHH-HHHHHHHHHHHh
Q 032125 48 LRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYA-IRQSIAKALVAF 96 (147)
Q Consensus 48 ~r~~i~~PL~~~~~~~~~~~di~v~V~GGG~~gQa~A-ir~aiAraL~~~ 96 (147)
.-..|..-|...+.. + ||+.|.++|||-..==-+ =-..+||||.++
T Consensus 177 A~~~i~~al~~~~~~--~-~Dviii~RGGGS~eDL~~Fn~e~v~~ai~~~ 223 (438)
T PRK00286 177 AAASIVAAIERANAR--G-EDVLIVARGGGSLEDLWAFNDEAVARAIAAS 223 (438)
T ss_pred HHHHHHHHHHHhcCC--C-CCEEEEecCCCCHHHhhccCcHHHHHHHHcC
Confidence 445577777766542 3 899999999994321100 023556666554
No 52
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=33.47 E-value=27 Score=23.17 Aligned_cols=52 Identities=23% Similarity=0.344 Sum_probs=32.8
Q ss_pred cccceeceEEEEecCcccchHHHHHHHHHHHHHHhhhhcCChhhHHHHHHHhhhcCCCceecc
Q 032125 62 HRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 124 (147)
Q Consensus 62 ~~~~~~di~v~V~GGG~~gQa~Air~aiAraL~~~~~~~~~~~~r~~Lk~~l~~yd~glLt~D 124 (147)
+.|+.++|.+.+.|++++.+..+=.......|-... +.|+..|.+ .|+=..+
T Consensus 22 ~~LG~v~v~l~~~~~~l~v~~~~~~~~~~~~L~~~~---------~~L~~~L~~--~G~~~~~ 73 (85)
T PF02120_consen 22 PELGSVEVKLRLQGGNLSVQFTAENPETKELLRQNL---------PELKERLQA--QGLEVVN 73 (85)
T ss_dssp GGG--EEEEEEEETTEEEEEEE--SSHHHHHHHHTH---------HHHHHHHHT--TT-EEEE
T ss_pred cccCcEEEEEEEeCCEEEEEEEECCHHHHHHHHHHH---------HHHHHHHHH--CCCCeEE
Confidence 457999999999999999998887777777776542 345555554 2665443
No 53
>PF00475 IGPD: Imidazoleglycerol-phosphate dehydratase; InterPro: IPR000807 Imidazoleglycerol-phosphate dehydratase is the enzyme that catalyses the seventh step in the biosynthesis of histidine in bacteria, fungi and plants. In most organisms it is a monofunctional protein of about 22 to 29 kD. In some bacteria such as Escherichia coli, it is the C-terminal domain of a bifunctional protein that include a histidinol-phosphatase domain [].; GO: 0004424 imidazoleglycerol-phosphate dehydratase activity, 0000105 histidine biosynthetic process; PDB: 2F1D_G 2AE8_A 1RHY_B.
Probab=33.15 E-value=1.2e+02 Score=23.62 Aligned_cols=70 Identities=26% Similarity=0.232 Sum_probs=40.3
Q ss_pred ceEEEEEEE-eCceeEEEcCeecccc---CcHHHHHHhhhhHHhhcccccceeceEEEEe-cCcccchHHHHHHHHHHHH
Q 032125 19 TAVAVTYCK-RGRGLIKINGCPIELV---EPEILRFKAFEPILLLGRHRFNGVDMRIRVK-GGGHTSQIYAIRQSIAKAL 93 (147)
Q Consensus 19 ta~A~v~l~-~G~G~i~INg~~l~~y---~~~~~r~~i~~PL~~~~~~~~~~~di~v~V~-GGG~~gQa~Air~aiAraL 93 (147)
+|.|+|.+- .|.+-...|+....+. ++-.+-+..++-|..- ...++++.+. |.-.-=+++|+--|++|||
T Consensus 70 EaL~~v~vDlsGRp~l~~~~~~~~~~iG~~~~el~~~F~~sla~~-----~~~tlHi~~~~G~N~HH~~Ea~FKa~grAL 144 (145)
T PF00475_consen 70 EALARVAVDLSGRPYLVFNGEFPREKIGDFDTELVEHFFRSLANN-----AGITLHIRVLYGENDHHIIEAIFKAFGRAL 144 (145)
T ss_dssp TEEEEEEEEESSS-EEEEE---SSSEETTEETTHHHHHHHHHHHH-----HTEEEEEEEEE-SSHHHHHHHHHHHHHHHH
T ss_pred hhhheeEEEecCCceEEEecccCccccCCCChhhHHHHHHHHHHh-----CCceEEEEEEeCCChHHHHHHHHHHHHHHh
Confidence 344555552 3444455443332222 1212333455555432 5789999998 8888899999999999998
No 54
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=32.12 E-value=1.1e+02 Score=28.54 Aligned_cols=64 Identities=17% Similarity=0.110 Sum_probs=38.4
Q ss_pred ceeEEEcCeeccccCcHHHHHHhhhhHH-hhcccccceeceEEEEecCcccchHHHHHHHHHHHHHHh
Q 032125 30 RGLIKINGCPIELVEPEILRFKAFEPIL-LLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAF 96 (147)
Q Consensus 30 ~G~i~INg~~l~~y~~~~~r~~i~~PL~-~~~~~~~~~~di~v~V~GGG~~gQa~Air~aiAraL~~~ 96 (147)
.|.|.+.|.+-...... ++.+..-|. .++. .+..+||+|++.+|..--.-.+.-+|||-||+.-
T Consensus 450 ~g~~~~~Gl~g~~~kEs--~~~~~a~l~~~~~~-~~~~~~i~I~l~~~~~~k~G~sadlaia~AilSa 514 (608)
T TIGR00764 450 EGRIIATGKLGEIAKEA--VTNVSALIKKYTGE-DISNYDIHIQFLQTYEGVEGDSASISVATAVISA 514 (608)
T ss_pred CceEEEecCcHHHHHHH--HHHHHHHHHHhhCC-CCCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Confidence 46677777543333221 222333333 5554 3678999999987766555555667777777764
No 55
>PRK11823 DNA repair protein RadA; Provisional
Probab=30.22 E-value=87 Score=27.99 Aligned_cols=47 Identities=21% Similarity=0.239 Sum_probs=34.3
Q ss_pred HHHhhhhH--HhhcccccceeceEEEEecCcccchHHHHHHHHHHHHHHhh
Q 032125 49 RFKAFEPI--LLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFY 97 (147)
Q Consensus 49 r~~i~~PL--~~~~~~~~~~~di~v~V~GGG~~gQa~Air~aiAraL~~~~ 97 (147)
|-.++..+ .-++.+ +...||+|++- ||+-=+--|.-+|||-||+.-.
T Consensus 323 Rv~~~~Avl~~~~g~~-~~~~~i~vnla-~~~~k~g~~~DLaIa~ailsa~ 371 (446)
T PRK11823 323 RLAMLLAVLEKRLGLP-LGDQDVYVNVV-GGLKITEPAADLAVALAIASSL 371 (446)
T ss_pred HHHHHHHHHHHHcCCC-CCCccEEEEcc-CCcccCCccccHHHHHHHHHhc
Confidence 44444555 555653 68899999999 7777666678888888888753
No 56
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=29.89 E-value=48 Score=29.54 Aligned_cols=47 Identities=23% Similarity=0.358 Sum_probs=28.7
Q ss_pred HHHHhhhhHHhhcccccceeceEEEEecCcccchHHHH-HHHHHHHHHHh
Q 032125 48 LRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAI-RQSIAKALVAF 96 (147)
Q Consensus 48 ~r~~i~~PL~~~~~~~~~~~di~v~V~GGG~~gQa~Ai-r~aiAraL~~~ 96 (147)
.-..|..-|...+.. ..+|+.|.++|||-..==-+- -..+|||+.++
T Consensus 171 a~~~i~~al~~~~~~--~~~dviii~RGGGs~eDL~~Fn~e~~~rai~~~ 218 (432)
T TIGR00237 171 AVQSIVESIELANTK--NECDVLIVGRGGGSLEDLWSFNDEKVARAIFLS 218 (432)
T ss_pred HHHHHHHHHHHhhcC--CCCCEEEEecCCCCHHHhhhcCcHHHHHHHHcC
Confidence 344567777766542 569999999999965322111 23456666544
No 57
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=29.45 E-value=33 Score=31.82 Aligned_cols=48 Identities=25% Similarity=0.371 Sum_probs=31.0
Q ss_pred eeceEEEEecCccc-chHHHHHHHHHHHHHHhhhh---------cCChhhHHHHHHHhhhc
Q 032125 66 GVDMRIRVKGGGHT-SQIYAIRQSIAKALVAFYQK---------YVDEQSKKEIKDILVRY 116 (147)
Q Consensus 66 ~~di~v~V~GGG~~-gQa~Air~aiAraL~~~~~~---------~~~~~~r~~Lk~~l~~y 116 (147)
.||..+.-.|..+| ||.+ |++|||||+. +|. -.|++....+.+.|.++
T Consensus 600 gldt~i~e~G~~LSgGQrQ--RialARall~-~p~iliLDE~Ts~LD~~te~~i~~~L~~~ 657 (708)
T TIGR01193 600 GYQTELSEEGSSISGGQKQ--RIALARALLT-DSKVLILDESTSNLDTITEKKIVNNLLNL 657 (708)
T ss_pred ccCcEecCCCCCCCHHHHH--HHHHHHHHhh-CCCEEEEeCccccCCHHHHHHHHHHHHHh
Confidence 56766655565566 5555 8999999986 333 23566666676666553
No 58
>PF09428 DUF2011: Fungal protein of unknown function (DUF2011); InterPro: IPR018555 This is a family of fungal proteins whose function is unknown.
Probab=29.45 E-value=19 Score=27.43 Aligned_cols=22 Identities=9% Similarity=0.039 Sum_probs=18.1
Q ss_pred EEEEeCc-eeEEEcCeeccccCc
Q 032125 24 TYCKRGR-GLIKINGCPIELVEP 45 (147)
Q Consensus 24 v~l~~G~-G~i~INg~~l~~y~~ 45 (147)
|.|.+-+ |.+++|.+|..+||.
T Consensus 2 I~Lreps~~~~i~~~RP~sYYfa 24 (131)
T PF09428_consen 2 ISLREPSPEEFIVNERPLSYYFA 24 (131)
T ss_pred ceecCCCCCccccCCCCCcceeC
Confidence 5566666 899999999999984
No 59
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=29.44 E-value=40 Score=29.46 Aligned_cols=22 Identities=23% Similarity=0.119 Sum_probs=18.1
Q ss_pred ceEEEEecCcccchHHHHHHHH
Q 032125 68 DMRIRVKGGGHTSQIYAIRQSI 89 (147)
Q Consensus 68 di~v~V~GGG~~gQa~Air~ai 89 (147)
|.++.|=|||..|-+-|+++|-
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~ 23 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAAN 23 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHh
Confidence 4557788999999999988873
No 60
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=28.77 E-value=39 Score=28.53 Aligned_cols=19 Identities=16% Similarity=0.235 Sum_probs=15.4
Q ss_pred EEEEecCcccchHHHHHHH
Q 032125 70 RIRVKGGGHTSQIYAIRQS 88 (147)
Q Consensus 70 ~v~V~GGG~~gQa~Air~a 88 (147)
+|.|-|||++|.+-|+.++
T Consensus 3 dV~IvGgG~~Gl~~A~~L~ 21 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFA 21 (374)
T ss_pred cEEEECCCHHHHHHHHHHH
Confidence 4677899999998887664
No 61
>PRK06185 hypothetical protein; Provisional
Probab=27.80 E-value=40 Score=28.45 Aligned_cols=21 Identities=19% Similarity=0.374 Sum_probs=16.4
Q ss_pred eeceEEEEecCcccchHHHHHHH
Q 032125 66 GVDMRIRVKGGGHTSQIYAIRQS 88 (147)
Q Consensus 66 ~~di~v~V~GGG~~gQa~Air~a 88 (147)
.+| |.|-|||++|-+-|+.++
T Consensus 6 ~~d--V~IvGgG~~Gl~~A~~La 26 (407)
T PRK06185 6 TTD--CCIVGGGPAGMMLGLLLA 26 (407)
T ss_pred ccc--EEEECCCHHHHHHHHHHH
Confidence 455 667899999999887764
No 62
>COG4104 Uncharacterized conserved protein [Function unknown]
Probab=27.35 E-value=52 Score=24.08 Aligned_cols=17 Identities=35% Similarity=0.550 Sum_probs=14.5
Q ss_pred EEEeCceeEEEcCeecc
Q 032125 25 YCKRGRGLIKINGCPIE 41 (147)
Q Consensus 25 ~l~~G~G~i~INg~~l~ 41 (147)
.+.+|+-.+.|||+|..
T Consensus 59 ~I~~Gs~tv~InGkpaA 75 (98)
T COG4104 59 VIAEGSSTVKINGKPAA 75 (98)
T ss_pred eEEeccceEEECCEEeE
Confidence 46788999999999975
No 63
>COG3526 Uncharacterized protein conserved in bacteria [Posttranslational modification, protein turnover, chaperones]
Probab=27.32 E-value=52 Score=23.82 Aligned_cols=22 Identities=23% Similarity=0.158 Sum_probs=17.8
Q ss_pred EEEEEEEeCce---eEEEcCeeccc
Q 032125 21 VAVTYCKRGRG---LIKINGCPIEL 42 (147)
Q Consensus 21 ~A~v~l~~G~G---~i~INg~~l~~ 42 (147)
+..|-+.||+| +|++||.-+.+
T Consensus 37 lgeV~L~PgTGG~FeI~~dg~~iWe 61 (99)
T COG3526 37 LGEVALIPGTGGVFEITCDGVLIWE 61 (99)
T ss_pred hheEEEecCCCceEEEEECCEEEEE
Confidence 46788999987 58899988765
No 64
>PF09860 DUF2087: Uncharacterized protein conserved in bacteria (DUF2087); InterPro: IPR018656 This domain, found in various hypothetical prokaryotic proteins and transcriptional activators, has no known function.
Probab=27.05 E-value=79 Score=21.44 Aligned_cols=16 Identities=31% Similarity=0.486 Sum_probs=13.2
Q ss_pred HHHHHHhhhcCCCceecc
Q 032125 107 KEIKDILVRYDRTLLVAD 124 (147)
Q Consensus 107 ~~Lk~~l~~yd~glLt~D 124 (147)
..||..|..| |||+||
T Consensus 47 a~LRR~LVd~--g~L~R~ 62 (71)
T PF09860_consen 47 ATLRRYLVDY--GLLERT 62 (71)
T ss_pred HHHHHHHHHc--CCeeec
Confidence 4688888876 999987
No 65
>PF06905 FAIM1: Fas apoptotic inhibitory molecule (FAIM1); InterPro: IPR010695 This family consists of several fas apoptotic inhibitory molecule (FAIM) proteins. FAIM expression is upregulated in B cells by anti-Ig treatment that induces Fas-resistance, and overexpression of FAIM diminishes sensitivity to Fas-mediated apoptosis of B and non-B cell lines. FAIM is highly evolutionarily conserved and is widely expressed in murine tissues, suggesting that FAIM plays an important role in cellular physiology [].; GO: 0043066 negative regulation of apoptosis; PDB: 3MX7_A 2KW1_A 2KD2_A.
Probab=26.97 E-value=78 Score=25.30 Aligned_cols=38 Identities=16% Similarity=0.174 Sum_probs=21.0
Q ss_pred eEeEeeeccc-eEEEEEEEeCce---eEEEcCeeccccCcHH
Q 032125 10 SVQCFGRKKT-AVAVTYCKRGRG---LIKINGCPIELVEPEI 47 (147)
Q Consensus 10 ~~~~~GrRKt-a~A~v~l~~G~G---~i~INg~~l~~y~~~~ 47 (147)
-.+.+|.++. +...+...+|.. .+.|||+|++.|..+.
T Consensus 53 e~F~ig~~~~k~~I~I~~~~g~~YeYsL~VdGksl~ky~e~~ 94 (177)
T PF06905_consen 53 ETFTIGGKNTKCEINIEAVSGFAYEYSLEVDGKSLKKYKEEQ 94 (177)
T ss_dssp EEEEETTTTEEEEEEEEEETTTEEEEEEEETTEEEEE--SST
T ss_pred cEEEECCCceEEEEEEEecCCceEEEEEEECCEEHHHHHHHH
Confidence 3456776533 333333344433 4889999999986543
No 66
>PTZ00367 squalene epoxidase; Provisional
Probab=26.57 E-value=69 Score=29.63 Aligned_cols=39 Identities=15% Similarity=0.162 Sum_probs=25.2
Q ss_pred HHHHhhhhHHhhcccccceeceEEEEecCcccchHHHHHHH
Q 032125 48 LRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQS 88 (147)
Q Consensus 48 ~r~~i~~PL~~~~~~~~~~~di~v~V~GGG~~gQa~Air~a 88 (147)
+.+++|.=+..... ..+.+.+|.|-|||+.|-+-|+.++
T Consensus 15 ~~~~~~~~~~~~~~--~~~~~~dViIVGaGiaGlalA~aLa 53 (567)
T PTZ00367 15 LLNRILSRLRFKPA--RTNYDYDVIIVGGSIAGPVLAKALS 53 (567)
T ss_pred HHHHHHHHHccCcc--ccccCccEEEECCCHHHHHHHHHHH
Confidence 34455555554321 2345666788999999999876654
No 67
>PRK08013 oxidoreductase; Provisional
Probab=26.42 E-value=40 Score=28.79 Aligned_cols=18 Identities=22% Similarity=0.337 Sum_probs=15.0
Q ss_pred EEEecCcccchHHHHHHH
Q 032125 71 IRVKGGGHTSQIYAIRQS 88 (147)
Q Consensus 71 v~V~GGG~~gQa~Air~a 88 (147)
|.|-|||++|.+-|+.++
T Consensus 6 V~IvGaGpaGl~~A~~La 23 (400)
T PRK08013 6 VVIAGGGMVGLAVACGLQ 23 (400)
T ss_pred EEEECcCHHHHHHHHHHh
Confidence 577899999999887664
No 68
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=26.31 E-value=41 Score=28.48 Aligned_cols=21 Identities=29% Similarity=0.558 Sum_probs=17.8
Q ss_pred EEeCceeEEEcCeeccccCcH
Q 032125 26 CKRGRGLIKINGCPIELVEPE 46 (147)
Q Consensus 26 l~~G~G~i~INg~~l~~y~~~ 46 (147)
+.|.+|++.+||+++.++.+.
T Consensus 51 l~p~~G~v~~~g~~l~~~~~~ 71 (259)
T COG4559 51 LSPDSGEVTLNGVPLNSWPPE 71 (259)
T ss_pred cCCCCCeEeeCCcChhhCCHH
Confidence 446789999999999999873
No 69
>PF12637 TSCPD: TSCPD domain; InterPro: IPR024434 The domain is found in isolation in many proteins where it has a conserved C-terminal motif TSCPD, after which the domain is named. Most copies of the domain possess 4 conserved cysteines that may be part of an Iron-sulphur cluster. This domain is found at the C terminus of some ribonucleoside-diphosphate reductase enzymes.
Probab=26.25 E-value=89 Score=22.03 Aligned_cols=30 Identities=30% Similarity=0.390 Sum_probs=21.5
Q ss_pred eeceEEEEe-cCcccchHHHHHHHHHHHHHH
Q 032125 66 GVDMRIRVK-GGGHTSQIYAIRQSIAKALVA 95 (147)
Q Consensus 66 ~~di~v~V~-GGG~~gQa~Air~aiAraL~~ 95 (147)
-++|++++. -||-.|..+|+.-.|+-+|-.
T Consensus 23 p~Evf~~~~~~Gg~~~~~~ai~rliS~~Lr~ 53 (95)
T PF12637_consen 23 PFEVFINVGKAGGCSGNLEAIARLISLALRS 53 (95)
T ss_pred ceEEEEecCcCCCchHHHHHHHHHHHHHHHc
Confidence 345778775 255588888888888888763
No 70
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=26.19 E-value=47 Score=28.11 Aligned_cols=19 Identities=32% Similarity=0.413 Sum_probs=15.9
Q ss_pred EEEEecCcccchHHHHHHH
Q 032125 70 RIRVKGGGHTSQIYAIRQS 88 (147)
Q Consensus 70 ~v~V~GGG~~gQa~Air~a 88 (147)
+|.|-|||++|-+-|+.++
T Consensus 5 dv~IvGgG~aGl~~A~~L~ 23 (384)
T PRK08849 5 DIAVVGGGMVGAATALGFA 23 (384)
T ss_pred cEEEECcCHHHHHHHHHHH
Confidence 3678899999999987774
No 71
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=26.17 E-value=41 Score=20.36 Aligned_cols=10 Identities=40% Similarity=0.408 Sum_probs=8.2
Q ss_pred ceeEEEcCee
Q 032125 30 RGLIKINGCP 39 (147)
Q Consensus 30 ~G~i~INg~~ 39 (147)
.|++.|||+=
T Consensus 23 pG~ViING~C 32 (36)
T PF08194_consen 23 PGNVIINGKC 32 (36)
T ss_pred CCeEEECcee
Confidence 5799999974
No 72
>PRK09838 periplasmic copper-binding protein; Provisional
Probab=26.11 E-value=2.6e+02 Score=20.61 Aligned_cols=51 Identities=20% Similarity=0.127 Sum_probs=33.3
Q ss_pred eCceeEEEcCeeccccCc-H-HHHHHhhhhHHhhcccccceeceEEEEecCcc
Q 032125 28 RGRGLIKINGCPIELVEP-E-ILRFKAFEPILLLGRHRFNGVDMRIRVKGGGH 78 (147)
Q Consensus 28 ~G~G~i~INg~~l~~y~~-~-~~r~~i~~PL~~~~~~~~~~~di~v~V~GGG~ 78 (147)
+..|.|+|+--|+..+.. . +....+-.|..+.+...=..+++.+...|+|.
T Consensus 54 ~~~~~iti~H~pIp~l~wPaMTM~F~v~~~~~l~~lk~G~~V~F~~~~~~~~~ 106 (115)
T PRK09838 54 LESKKITIHHEPIPAVNWPEMTMRFTITPQTKMSEIKTGDKVAFNFVQQGNLS 106 (115)
T ss_pred CCCCEEEEeecccccCCCCCccccccCCChhhhccCCCCCEEEEEEEEcCCcE
Confidence 567899999999998753 2 23334555554433221157888888888876
No 73
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=25.69 E-value=76 Score=26.42 Aligned_cols=14 Identities=36% Similarity=0.563 Sum_probs=11.2
Q ss_pred eCceeEEEcCeecc
Q 032125 28 RGRGLIKINGCPIE 41 (147)
Q Consensus 28 ~G~G~i~INg~~l~ 41 (147)
|..|+|.+||.++.
T Consensus 54 pt~G~i~~~~~dl~ 67 (223)
T COG2884 54 PTRGKILVNGHDLS 67 (223)
T ss_pred CCCceEEECCeecc
Confidence 55799999998764
No 74
>COG4531 ZnuA ABC-type Zn2+ transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=25.40 E-value=29 Score=30.14 Aligned_cols=48 Identities=23% Similarity=0.256 Sum_probs=37.9
Q ss_pred chHHHHHHHHHHHHHHhhhhcCChhhHHHHHHHhhhcCCCceeccCCCcccCC
Q 032125 80 SQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKK 132 (147)
Q Consensus 80 gQa~Air~aiAraL~~~~~~~~~~~~r~~Lk~~l~~yd~glLt~D~R~~ERKK 132 (147)
+-+.++..+|+..|.+. ||+.+..++..|++|++.|--.|--.+|+=|
T Consensus 158 ~~ak~~A~~i~~~L~e~-----dp~~~a~y~aNlk~f~~~La~~d~~i~~~L~ 205 (318)
T COG4531 158 AIAKAVAAAIAKKLAEL-----DPQNAAKYDANLKDFEAQLAALDKKVGEELA 205 (318)
T ss_pred hHHHHHHHHHHHHHHhh-----ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56778899999999997 6788888999999888777666666666544
No 75
>PF01808 AICARFT_IMPCHas: AICARFT/IMPCHase bienzyme; InterPro: IPR002695 This is a family of bifunctional enzymes catalysing the last two steps in de novo purine biosynthesis. The bifunctional enzyme is found in both prokaryotes and eukaryotes. The second last step is catalysed by 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase 2.1.2.3 from EC (AICARFT), this enzyme catalyses the formylation of AICAR with 10-formyl-tetrahydrofolate to yield FAICAR and tetrahydrofolate []. The last step is catalysed by IMP (Inosine monophosphate) cyclohydrolase 3.5.4.10 from EC (IMPCHase), cyclizing FAICAR (5-formylaminoimidazole-4-carboxamide ribonucleotide) to IMP [].; GO: 0003937 IMP cyclohydrolase activity, 0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity, 0006164 purine nucleotide biosynthetic process; PDB: 1ZCZ_A 1PL0_D 1PKX_C 1P4R_B 1G8M_B 2IU3_B 2B1I_A 2B1G_D 1OZ0_B 1M9N_B ....
Probab=25.27 E-value=49 Score=28.78 Aligned_cols=42 Identities=21% Similarity=0.164 Sum_probs=29.4
Q ss_pred HHHHhhhhHHhhcccccceeceEEEEe-------cCcccchHHHHHHHHHHH
Q 032125 48 LRFKAFEPILLLGRHRFNGVDMRIRVK-------GGGHTSQIYAIRQSIAKA 92 (147)
Q Consensus 48 ~r~~i~~PL~~~~~~~~~~~di~v~V~-------GGG~~gQa~Air~aiAra 92 (147)
....++.-..++.- -+=|-.|.++ |.|+++..+|+++|+.||
T Consensus 267 e~~dL~FAwkv~k~---vKSNAIv~ak~~~tvGIGaGQ~sRVda~~iA~~KA 315 (315)
T PF01808_consen 267 ELEDLLFAWKVVKH---VKSNAIVLAKDGQTVGIGAGQMSRVDAARIAIEKA 315 (315)
T ss_dssp HHHHHHHHHHHHHC---SSSSEEEEEETTEEEEEEESSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh---cccceEEEEeCCeEEEeCCCCcchHHHHHHHHhhC
Confidence 33456666666631 3445555554 789999999999999986
No 76
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=25.02 E-value=82 Score=23.74 Aligned_cols=33 Identities=21% Similarity=0.333 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHhhhh---------cCChhhHHHHHHHhhhc
Q 032125 83 YAIRQSIAKALVAFYQK---------YVDEQSKKEIKDILVRY 116 (147)
Q Consensus 83 ~Air~aiAraL~~~~~~---------~~~~~~r~~Lk~~l~~y 116 (147)
+.-|.+||+||+.- |. -.|+..+..|.+.|.++
T Consensus 105 ~~qr~~la~al~~~-p~llilDEP~~~LD~~~~~~l~~~l~~~ 146 (178)
T cd03229 105 QQQRVALARALAMD-PDVLLLDEPTSALDPITRREVRALLKSL 146 (178)
T ss_pred HHHHHHHHHHHHCC-CCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 46699999999863 33 24666777777766553
No 77
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=24.26 E-value=50 Score=25.89 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=15.0
Q ss_pred EEEecCcccchHHHHHHH
Q 032125 71 IRVKGGGHTSQIYAIRQS 88 (147)
Q Consensus 71 v~V~GGG~~gQa~Air~a 88 (147)
|.|-|||++|-+-|+.++
T Consensus 3 v~IiGaG~aGl~~A~~l~ 20 (295)
T TIGR02032 3 VVVVGAGPAGASAAYRLA 20 (295)
T ss_pred EEEECCCHHHHHHHHHHH
Confidence 667899999999887764
No 78
>PRK08163 salicylate hydroxylase; Provisional
Probab=24.05 E-value=58 Score=27.30 Aligned_cols=20 Identities=20% Similarity=0.288 Sum_probs=16.4
Q ss_pred eEEEEecCcccchHHHHHHH
Q 032125 69 MRIRVKGGGHTSQIYAIRQS 88 (147)
Q Consensus 69 i~v~V~GGG~~gQa~Air~a 88 (147)
..|.|-|||++|-+-|+.++
T Consensus 5 ~~V~IvGaGiaGl~~A~~L~ 24 (396)
T PRK08163 5 TPVLIVGGGIGGLAAALALA 24 (396)
T ss_pred CeEEEECCcHHHHHHHHHHH
Confidence 45788899999999887664
No 79
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=24.03 E-value=64 Score=27.69 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=17.6
Q ss_pred eEEEEecCcccchHHHHHHHHH
Q 032125 69 MRIRVKGGGHTSQIYAIRQSIA 90 (147)
Q Consensus 69 i~v~V~GGG~~gQa~Air~aiA 90 (147)
.+|.|-|+|++|-+-|+++|=+
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~~ 25 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAKA 25 (396)
T ss_pred eeEEEECCchHHHHHHHHHHHc
Confidence 4467779999999998887654
No 80
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=24.00 E-value=42 Score=20.00 Aligned_cols=13 Identities=31% Similarity=0.549 Sum_probs=11.1
Q ss_pred ceeEEEcCeeccc
Q 032125 30 RGLIKINGCPIEL 42 (147)
Q Consensus 30 ~G~i~INg~~l~~ 42 (147)
.|.|.|||+....
T Consensus 25 ~g~V~VNg~~v~~ 37 (48)
T PF01479_consen 25 QGRVKVNGKVVKD 37 (48)
T ss_dssp TTTEEETTEEESS
T ss_pred CCEEEECCEEEcC
Confidence 5889999999874
No 81
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=23.79 E-value=50 Score=29.63 Aligned_cols=47 Identities=21% Similarity=0.225 Sum_probs=25.7
Q ss_pred eceEEEEecCccc-chHHHHHHHHHHHHHHhhhh--------cCChhhHHHHHHHhhh
Q 032125 67 VDMRIRVKGGGHT-SQIYAIRQSIAKALVAFYQK--------YVDEQSKKEIKDILVR 115 (147)
Q Consensus 67 ~di~v~V~GGG~~-gQa~Air~aiAraL~~~~~~--------~~~~~~r~~Lk~~l~~ 115 (147)
+|..+.-.|--+| || .=|++|||||+.--+- -.|++.+..+.+.|..
T Consensus 466 l~t~i~~~g~~LSgGq--~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~ 521 (576)
T TIGR02204 466 YDTYLGERGVTLSGGQ--RQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALET 521 (576)
T ss_pred CCceeCCCCCcCCHHH--HHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHH
Confidence 4544332333344 35 5599999999863211 2355666656555544
No 82
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=23.74 E-value=65 Score=30.38 Aligned_cols=35 Identities=23% Similarity=0.316 Sum_probs=25.5
Q ss_pred HHhhhhHHhhcccccceeceEEEEecCcccchHHHHHHH
Q 032125 50 FKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQS 88 (147)
Q Consensus 50 ~~i~~PL~~~~~~~~~~~di~v~V~GGG~~gQa~Air~a 88 (147)
.+-++||+-... ..+=.+.|-|||++|-.-|+-+|
T Consensus 110 ar~le~le~~~~----~v~~svLVIGGGvAGitAAl~La 144 (622)
T COG1148 110 ARKLEPLEEIKV----EVSKSVLVIGGGVAGITAALELA 144 (622)
T ss_pred HhhcCChhhHHH----hhccceEEEcCcHHHHHHHHHHH
Confidence 345778876543 45567889999999988877665
No 83
>cd03482 MutL_Trans_MutL MutL_Trans_MutL: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to Escherichia coli MutL. EcMutL belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from the ATP-binding site to the DNA breakage/reunion regions of the enzymes. It has been suggested that during initiation of DNA mismatch repair in E. coli, the mismatch recognition protein MutS recruits MutL in the presence of ATP. The MutS(ATP)-MutL ternary complex formed, then recruits the latent endonuclease MutH. Prokaryotic MutS and MutL are homodimers.
Probab=23.69 E-value=30 Score=25.29 Aligned_cols=11 Identities=18% Similarity=0.223 Sum_probs=9.3
Q ss_pred eEEEcCeeccc
Q 032125 32 LIKINGCPIEL 42 (147)
Q Consensus 32 ~i~INg~~l~~ 42 (147)
-|.|||+|+..
T Consensus 47 ~ifVN~R~V~~ 57 (123)
T cd03482 47 YFYVNGRMVRD 57 (123)
T ss_pred EEEEcCcEECC
Confidence 48899999874
No 84
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=23.66 E-value=53 Score=30.42 Aligned_cols=48 Identities=31% Similarity=0.468 Sum_probs=31.5
Q ss_pred eeceEEEEecCcccc-hHHHHHHHHHHHHHHhhhh---------cCChhhHHHHHHHhhhc
Q 032125 66 GVDMRIRVKGGGHTS-QIYAIRQSIAKALVAFYQK---------YVDEQSKKEIKDILVRY 116 (147)
Q Consensus 66 ~~di~v~V~GGG~~g-Qa~Air~aiAraL~~~~~~---------~~~~~~r~~Lk~~l~~y 116 (147)
.||-.+.-.|..+|| |.+ |+||||||+. +|. -.|++....+.+.|.+.
T Consensus 590 gl~T~i~e~G~~LSgGQrQ--RlalARall~-~p~iliLDE~Ts~LD~~te~~i~~~l~~~ 647 (694)
T TIGR03375 590 GLDMQIGERGRSLSGGQRQ--AVALARALLR-DPPILLLDEPTSAMDNRSEERFKDRLKRW 647 (694)
T ss_pred cccceecCCCCCCCHHHHH--HHHHHHHHhc-CCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 567666656656664 655 9999999996 333 23666666676666554
No 85
>cd03483 MutL_Trans_MLH1 MutL_Trans_MLH1: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH1 (MutL homologue 1). This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. MLH1 forms heterodimers with PMS2, PMS1 and MLH3. These three complexes have distinct functions in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Roles for hMLH1-hPMS1 or hMLH1-hMLH3 in MMR have not been established. Cells lacking hMLH1 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 causes predisposition to HNPCC, Muir-Torre syndrome and Turcot syndrome (HNPCC variant). Mutation in hMLH1 accounts for a large fraction of HNPCC families.
Probab=23.66 E-value=26 Score=25.76 Aligned_cols=11 Identities=27% Similarity=0.341 Sum_probs=9.3
Q ss_pred eEEEcCeeccc
Q 032125 32 LIKINGCPIEL 42 (147)
Q Consensus 32 ~i~INg~~l~~ 42 (147)
.+.|||+|+..
T Consensus 51 ~~fVNgR~V~~ 61 (127)
T cd03483 51 ILFINNRLVEC 61 (127)
T ss_pred EEEEcCCEecC
Confidence 48899999985
No 86
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=23.28 E-value=52 Score=27.77 Aligned_cols=19 Identities=21% Similarity=0.337 Sum_probs=15.5
Q ss_pred EEEEecCcccchHHHHHHH
Q 032125 70 RIRVKGGGHTSQIYAIRQS 88 (147)
Q Consensus 70 ~v~V~GGG~~gQa~Air~a 88 (147)
+|.|-|||++|-+-|+.++
T Consensus 8 dV~IvGaG~aGl~~A~~La 26 (392)
T PRK08773 8 DAVIVGGGVVGAACALALA 26 (392)
T ss_pred CEEEECcCHHHHHHHHHHh
Confidence 4677899999999887764
No 87
>PRK06996 hypothetical protein; Provisional
Probab=23.20 E-value=53 Score=28.00 Aligned_cols=21 Identities=19% Similarity=0.162 Sum_probs=17.1
Q ss_pred eEEEEecCcccchHHHHHHHH
Q 032125 69 MRIRVKGGGHTSQIYAIRQSI 89 (147)
Q Consensus 69 i~v~V~GGG~~gQa~Air~ai 89 (147)
.+|.|-|||++|.+-|+.++-
T Consensus 12 ~dv~IvGgGpaG~~~A~~L~~ 32 (398)
T PRK06996 12 FDIAIVGAGPVGLALAGWLAR 32 (398)
T ss_pred CCEEEECcCHHHHHHHHHHhc
Confidence 347778999999999988763
No 88
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=23.19 E-value=55 Score=28.57 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=17.7
Q ss_pred eeceEEEEecCcccchHHHHHHHH
Q 032125 66 GVDMRIRVKGGGHTSQIYAIRQSI 89 (147)
Q Consensus 66 ~~di~v~V~GGG~~gQa~Air~ai 89 (147)
+|| |.|-|||++|.+-|+.+|-
T Consensus 5 ~~D--ViIVGaGpAG~~aA~~La~ 26 (428)
T PRK10157 5 IFD--AIIVGAGLAGSVAALVLAR 26 (428)
T ss_pred cCc--EEEECcCHHHHHHHHHHHh
Confidence 566 5577999999999988763
No 89
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=23.15 E-value=58 Score=27.32 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=16.4
Q ss_pred eeceEEEEecCcccchHHHHHHH
Q 032125 66 GVDMRIRVKGGGHTSQIYAIRQS 88 (147)
Q Consensus 66 ~~di~v~V~GGG~~gQa~Air~a 88 (147)
.|| |.|-|||++|-+-|+.++
T Consensus 5 ~~d--ViIvGgG~aGl~~A~~La 25 (391)
T PRK08020 5 PTD--IAIVGGGMVGAALALGLA 25 (391)
T ss_pred ccc--EEEECcCHHHHHHHHHHh
Confidence 466 566799999999887664
No 90
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=23.14 E-value=78 Score=24.58 Aligned_cols=34 Identities=24% Similarity=0.240 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHhhhh---------cCChhhHHHHHHHhhhc
Q 032125 82 IYAIRQSIAKALVAFYQK---------YVDEQSKKEIKDILVRY 116 (147)
Q Consensus 82 a~Air~aiAraL~~~~~~---------~~~~~~r~~Lk~~l~~y 116 (147)
-+.-|++|||||+. .|. ..|+..+..+.+.|.++
T Consensus 75 Gq~qrv~laral~~-~p~lllLDEPts~LD~~~~~~l~~~l~~~ 117 (177)
T cd03222 75 GELQRVAIAAALLR-NATFYLFDEPSAYLDIEQRLNAARAIRRL 117 (177)
T ss_pred HHHHHHHHHHHHhc-CCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 34679999999985 333 24666666666666543
No 91
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=23.06 E-value=57 Score=28.59 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=18.9
Q ss_pred eeceEEEEecCcccchHHHHHHHH
Q 032125 66 GVDMRIRVKGGGHTSQIYAIRQSI 89 (147)
Q Consensus 66 ~~di~v~V~GGG~~gQa~Air~ai 89 (147)
..+.+|.|-|||++|-+-|..++=
T Consensus 22 ~~~~DVvIIGgGi~Gls~A~~La~ 45 (460)
T TIGR03329 22 DTQADVCIVGGGFTGLWTAIMIKQ 45 (460)
T ss_pred CceeCEEEECCCHHHHHHHHHHHH
Confidence 445668888999999998887754
No 92
>PRK06753 hypothetical protein; Provisional
Probab=22.87 E-value=63 Score=26.84 Aligned_cols=19 Identities=21% Similarity=0.204 Sum_probs=15.6
Q ss_pred EEEEecCcccchHHHHHHH
Q 032125 70 RIRVKGGGHTSQIYAIRQS 88 (147)
Q Consensus 70 ~v~V~GGG~~gQa~Air~a 88 (147)
.|.|-|||++|-+-|+.++
T Consensus 2 ~V~IvGgG~aGl~~A~~L~ 20 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQ 20 (373)
T ss_pred EEEEECCCHHHHHHHHHHH
Confidence 4778899999999887764
No 93
>cd03485 MutL_Trans_hPMS_1_like MutL_Trans_hPMS1_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM1 (hPSM1) and yeast MLH2. hPSM1 and yMLH2 are members of the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. PMS1 forms a heterodimer with MLH1. The MLH1-PMS1 complex functions in meiosis. Loss of yMLH2 results in a small but significant decrease in spore viability and a significant increase in gene conversion frequencies. A role for hMLH1-hPMS1 in DNA mismatch repair has not been established. Mutation in hMLH1 accounts for a large fraction of Lynch syndrome (HNPCC) families, however there is no convincing evidence to support hPMS1 having a role in HNPCC predisposition.
Probab=22.40 E-value=38 Score=24.91 Aligned_cols=11 Identities=36% Similarity=0.791 Sum_probs=9.4
Q ss_pred eEEEcCeeccc
Q 032125 32 LIKINGCPIEL 42 (147)
Q Consensus 32 ~i~INg~~l~~ 42 (147)
-|.|||+|+..
T Consensus 52 ~~fVN~R~v~~ 62 (132)
T cd03485 52 FISVNSRPVSL 62 (132)
T ss_pred EEEECCeeccc
Confidence 48899999975
No 94
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=22.32 E-value=3.1e+02 Score=25.06 Aligned_cols=65 Identities=18% Similarity=0.141 Sum_probs=35.6
Q ss_pred ceeEEEcCeeccc-cCc--H------HH---HHHhhhhHHhh-cccccceeceEEEEecCcccchHHHHHHHHHHHHHHh
Q 032125 30 RGLIKINGCPIEL-VEP--E------IL---RFKAFEPILLL-GRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAF 96 (147)
Q Consensus 30 ~G~i~INg~~l~~-y~~--~------~~---r~~i~~PL~~~-~~~~~~~~di~v~V~GGG~~gQa~Air~aiAraL~~~ 96 (147)
.|.|.|+|.+-++ ... . .. ++.+..-|.-. +.+ +..+||+|++-||-. -.--+.-+|||-||+.-
T Consensus 378 ~g~~~i~G~~~~~~~~~~~~~~~~k~~~~es~~~v~~~l~~~~g~~-~~~~di~vn~p~~~~-k~Gpsadlaia~ailsa 455 (531)
T TIGR02902 378 PGSINVTGIIEEEEIGGSGKSVRRKSSARGSVENVLAVLRSVFGIN-PQNYDIHINFPGGIP-VDGPSAGVAIAVAIYSA 455 (531)
T ss_pred CCeEEEEeccCccccccchhhhhHHHHHHHHHHHHHHHHHHhcCCC-CCCeeEEEEcCCCCC-CCCccHHHHHHHHHHHH
Confidence 4689999988652 221 1 11 22233334322 543 578999999876532 22223455566666553
No 95
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=22.19 E-value=74 Score=25.39 Aligned_cols=18 Identities=17% Similarity=0.291 Sum_probs=11.3
Q ss_pred EEEEecCcccchHHHHHH
Q 032125 70 RIRVKGGGHTSQIYAIRQ 87 (147)
Q Consensus 70 ~v~V~GGG~~gQa~Air~ 87 (147)
.|.|-|||++|-+-|+.+
T Consensus 3 dV~IvGaG~aGl~~A~~L 20 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALAL 20 (356)
T ss_dssp EEEEE--SHHHHHHHHHH
T ss_pred eEEEECCCHHHHHHHHHH
Confidence 466789999998765443
No 96
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=22.05 E-value=54 Score=27.92 Aligned_cols=19 Identities=21% Similarity=0.338 Sum_probs=15.6
Q ss_pred EEEEecCcccchHHHHHHH
Q 032125 70 RIRVKGGGHTSQIYAIRQS 88 (147)
Q Consensus 70 ~v~V~GGG~~gQa~Air~a 88 (147)
+|.|-|||++|.+-|+.++
T Consensus 6 dV~IvGaG~~Gl~~A~~L~ 24 (405)
T PRK08850 6 DVAIIGGGMVGLALAAALK 24 (405)
T ss_pred CEEEECccHHHHHHHHHHH
Confidence 3777899999999987764
No 97
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=21.86 E-value=66 Score=29.87 Aligned_cols=48 Identities=27% Similarity=0.300 Sum_probs=31.0
Q ss_pred eeceEEEEecCccc-chHHHHHHHHHHHHHHhhhh---------cCChhhHHHHHHHhhhc
Q 032125 66 GVDMRIRVKGGGHT-SQIYAIRQSIAKALVAFYQK---------YVDEQSKKEIKDILVRY 116 (147)
Q Consensus 66 ~~di~v~V~GGG~~-gQa~Air~aiAraL~~~~~~---------~~~~~~r~~Lk~~l~~y 116 (147)
.+|-.+.-.|..+| ||. =|++|||||+.- |. -.|++.+..+.+.|.++
T Consensus 582 gl~t~i~~~g~~LSgGq~--qri~lARall~~-~~ililDEpts~LD~~~~~~i~~~l~~~ 639 (694)
T TIGR01846 582 GYNTEVGEKGANLSGGQR--QRIAIARALVGN-PRILIFDEATSALDYESEALIMRNMREI 639 (694)
T ss_pred ccCcEecCCCCCCCHHHH--HHHHHHHHHHhC-CCEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence 46766655565565 454 499999999863 32 24666666676666654
No 98
>PRK10015 oxidoreductase; Provisional
Probab=21.86 E-value=59 Score=28.47 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=16.8
Q ss_pred eEEEEecCcccchHHHHHHHH
Q 032125 69 MRIRVKGGGHTSQIYAIRQSI 89 (147)
Q Consensus 69 i~v~V~GGG~~gQa~Air~ai 89 (147)
.+|.|-|||++|-+-|+.+|=
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~ 26 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMAR 26 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHh
Confidence 347788999999999887653
No 99
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=21.53 E-value=68 Score=29.14 Aligned_cols=48 Identities=19% Similarity=0.219 Sum_probs=29.0
Q ss_pred eceEEEEecCcccchHHHHHHHHHHHHHHhhhh---------cCChhhHHHHHHHhhhc
Q 032125 67 VDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQK---------YVDEQSKKEIKDILVRY 116 (147)
Q Consensus 67 ~di~v~V~GGG~~gQa~Air~aiAraL~~~~~~---------~~~~~~r~~Lk~~l~~y 116 (147)
+|-.+--.|.-+| .-+.=|+||||||+. +|. ..|++....+.+.|.++
T Consensus 465 ldT~vge~g~~LS-gGqrqRialARall~-~~~ililDE~ts~lD~~t~~~i~~~l~~~ 521 (574)
T PRK11160 465 LNAWLGEGGRQLS-GGEQRRLGIARALLH-DAPLLLLDEPTEGLDAETERQILELLAEH 521 (574)
T ss_pred cCchhcCCCCCCC-HHHHHHHHHHHHHhc-CCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 4433333333344 334559999999986 333 24666777777776654
No 100
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=21.49 E-value=47 Score=24.89 Aligned_cols=17 Identities=41% Similarity=0.464 Sum_probs=13.7
Q ss_pred CceeEEEcCeeccccCc
Q 032125 29 GRGLIKINGCPIELVEP 45 (147)
Q Consensus 29 G~G~i~INg~~l~~y~~ 45 (147)
.+-.|.|||+|++++..
T Consensus 61 ~S~~I~inG~piE~~l~ 77 (120)
T PF10865_consen 61 ESPTIRINGRPIEDLLG 77 (120)
T ss_pred CCCeeeECCEehhHhhC
Confidence 46689999999987653
No 101
>PRK07588 hypothetical protein; Provisional
Probab=21.45 E-value=70 Score=26.95 Aligned_cols=19 Identities=16% Similarity=0.324 Sum_probs=15.8
Q ss_pred EEEEecCcccchHHHHHHH
Q 032125 70 RIRVKGGGHTSQIYAIRQS 88 (147)
Q Consensus 70 ~v~V~GGG~~gQa~Air~a 88 (147)
.|.|-|||++|-+-|+.++
T Consensus 2 ~V~IVGgG~aGl~~A~~L~ 20 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLR 20 (391)
T ss_pred eEEEECccHHHHHHHHHHH
Confidence 4678899999999887765
No 102
>PRK07045 putative monooxygenase; Reviewed
Probab=21.43 E-value=76 Score=26.70 Aligned_cols=19 Identities=16% Similarity=0.202 Sum_probs=15.8
Q ss_pred EEEEecCcccchHHHHHHH
Q 032125 70 RIRVKGGGHTSQIYAIRQS 88 (147)
Q Consensus 70 ~v~V~GGG~~gQa~Air~a 88 (147)
.|.|-|||++|-+-|+.++
T Consensus 7 ~V~IiGgGpaGl~~A~~L~ 25 (388)
T PRK07045 7 DVLINGSGIAGVALAHLLG 25 (388)
T ss_pred EEEEECCcHHHHHHHHHHH
Confidence 4678899999999887765
No 103
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=21.24 E-value=61 Score=27.38 Aligned_cols=20 Identities=20% Similarity=0.313 Sum_probs=15.9
Q ss_pred eEEEEecCcccchHHHHHHH
Q 032125 69 MRIRVKGGGHTSQIYAIRQS 88 (147)
Q Consensus 69 i~v~V~GGG~~gQa~Air~a 88 (147)
.+|.|-|||++|-+-|+.++
T Consensus 19 ~dV~IvGaG~aGl~~A~~L~ 38 (415)
T PRK07364 19 YDVAIVGGGIVGLTLAAALK 38 (415)
T ss_pred cCEEEECcCHHHHHHHHHHh
Confidence 34678899999999887764
No 104
>PRK11445 putative oxidoreductase; Provisional
Probab=21.16 E-value=71 Score=26.82 Aligned_cols=21 Identities=19% Similarity=0.135 Sum_probs=16.3
Q ss_pred EEEEecCcccchHHHHHHHHHHH
Q 032125 70 RIRVKGGGHTSQIYAIRQSIAKA 92 (147)
Q Consensus 70 ~v~V~GGG~~gQa~Air~aiAra 92 (147)
+|.|-|||++|-+-|+.+ |++
T Consensus 3 dV~IvGaGpaGl~~A~~L--a~~ 23 (351)
T PRK11445 3 DVAIIGLGPAGSALARLL--AGK 23 (351)
T ss_pred eEEEECCCHHHHHHHHHH--hcc
Confidence 467889999999988764 454
No 105
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=20.56 E-value=80 Score=26.15 Aligned_cols=20 Identities=25% Similarity=0.300 Sum_probs=14.6
Q ss_pred eEEEEecCcccchHHHHHHH
Q 032125 69 MRIRVKGGGHTSQIYAIRQS 88 (147)
Q Consensus 69 i~v~V~GGG~~gQa~Air~a 88 (147)
.+|.|-|||++|-+-|..++
T Consensus 5 ~~vvVIGgGi~Gls~A~~La 24 (387)
T COG0665 5 MDVVIIGGGIVGLSAAYYLA 24 (387)
T ss_pred ceEEEECCcHHHHHHHHHHH
Confidence 45777899999976665554
No 106
>PRK09126 hypothetical protein; Provisional
Probab=20.38 E-value=71 Score=26.74 Aligned_cols=19 Identities=26% Similarity=0.317 Sum_probs=15.3
Q ss_pred EEEEecCcccchHHHHHHH
Q 032125 70 RIRVKGGGHTSQIYAIRQS 88 (147)
Q Consensus 70 ~v~V~GGG~~gQa~Air~a 88 (147)
+|.|-|||++|-+-|+.++
T Consensus 5 dviIvGgG~aGl~~A~~L~ 23 (392)
T PRK09126 5 DIVVVGAGPAGLSFARSLA 23 (392)
T ss_pred cEEEECcCHHHHHHHHHHH
Confidence 3667899999998887765
No 107
>PHA01748 hypothetical protein
Probab=20.15 E-value=1.4e+02 Score=19.47 Aligned_cols=18 Identities=33% Similarity=0.420 Sum_probs=13.8
Q ss_pred cccchHHHHHHHHHHHHHH
Q 032125 77 GHTSQIYAIRQSIAKALVA 95 (147)
Q Consensus 77 G~~gQa~Air~aiAraL~~ 95 (147)
|. ..+++||.||-..+-.
T Consensus 25 g~-~RSE~Ir~Ai~~~~~~ 42 (60)
T PHA01748 25 GL-NRSEAIRKAIEKMVKD 42 (60)
T ss_pred CC-CHHHHHHHHHHHHHHH
Confidence 45 5999999999866544
Done!