Query 032125
Match_columns 147
No_of_seqs 126 out of 1057
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 16:01:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032125.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032125hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_Q RP61R, 40S ribosomal pr 100.0 3.9E-64 1.3E-68 384.6 15.1 140 8-147 4-143 (143)
2 2xzm_I RPS16E; ribosome, trans 100.0 1.8E-61 6E-66 370.5 13.3 140 7-147 5-145 (145)
3 2zkq_i 40S ribosomal protein S 100.0 7E-62 2.4E-66 373.1 6.5 142 6-147 5-146 (146)
4 3j20_K 30S ribosomal protein S 100.0 6.7E-59 2.3E-63 352.7 12.9 132 9-147 2-135 (135)
5 3iz6_I 40S ribosomal protein S 100.0 1E-63 3.5E-68 384.4 -14.0 141 7-147 9-149 (149)
6 2vqe_I 30S ribosomal protein S 100.0 6.3E-57 2.1E-61 339.2 9.9 124 11-147 4-128 (128)
7 3r8n_I 30S ribosomal protein S 100.0 5.1E-57 1.7E-61 339.3 5.0 125 10-147 2-127 (127)
8 3bbn_I Ribosomal protein S9; s 100.0 8.5E-54 2.9E-58 340.7 7.6 127 8-147 69-197 (197)
9 4f4c_A Multidrug resistance pr 84.2 0.77 2.6E-05 44.5 4.0 48 65-115 1205-1262(1321)
10 4f4c_A Multidrug resistance pr 73.7 1.7 5.8E-05 42.1 2.8 29 65-95 542-571 (1321)
11 1rre_A ATP-dependent protease 66.7 7.4 0.00025 30.0 4.6 70 23-96 30-107 (200)
12 2x36_A LON protease homolog, m 66.1 5.3 0.00018 31.0 3.7 69 28-96 43-115 (207)
13 3m6a_A ATP-dependent protease 65.4 6.4 0.00022 34.3 4.4 74 23-96 373-450 (543)
14 3oz2_A Digeranylgeranylglycero 61.8 4.2 0.00014 31.8 2.4 22 65-88 3-24 (397)
15 3kkj_A Amine oxidase, flavin-c 50.2 7.1 0.00024 27.1 1.7 19 71-89 5-23 (336)
16 1xhk_A Putative protease LA ho 46.1 24 0.00083 26.5 4.3 33 64-96 77-109 (187)
17 4gcm_A TRXR, thioredoxin reduc 42.5 14 0.0005 28.3 2.6 24 66-89 4-27 (312)
18 4gde_A UDP-galactopyranose mut 41.3 15 0.0005 30.3 2.5 22 67-88 9-30 (513)
19 1z0w_A Putative protease LA ho 39.2 13 0.00043 28.8 1.8 62 31-95 44-106 (207)
20 4b1b_A TRXR, thioredoxin reduc 32.0 24 0.00081 30.8 2.5 24 65-88 39-62 (542)
21 3dme_A Conserved exported prot 29.0 32 0.0011 26.4 2.6 21 69-89 5-25 (369)
22 2oln_A NIKD protein; flavoprot 28.6 32 0.0011 27.3 2.5 21 69-89 5-25 (397)
23 1hyu_A AHPF, alkyl hydroperoxi 26.8 86 0.0029 26.6 5.1 20 69-88 213-232 (521)
24 3cgv_A Geranylgeranyl reductas 26.0 38 0.0013 26.5 2.5 19 70-88 6-24 (397)
25 3nix_A Flavoprotein/dehydrogen 25.6 39 0.0013 26.9 2.5 20 69-88 6-25 (421)
26 3mx7_A FAS apoptotic inhibitor 25.2 59 0.002 22.4 3.1 32 11-43 53-89 (90)
27 1ryi_A Glycine oxidase; flavop 25.2 40 0.0014 26.3 2.5 22 68-89 17-38 (382)
28 3k1j_A LON protease, ATP-depen 25.1 1.2E+02 0.004 26.4 5.7 61 30-95 434-497 (604)
29 2qa2_A CABE, polyketide oxygen 24.9 39 0.0013 28.6 2.6 24 66-89 10-33 (499)
30 3fpz_A Thiazole biosynthetic e 24.3 25 0.00085 27.5 1.1 25 68-92 65-89 (326)
31 3rp8_A Flavoprotein monooxygen 23.5 41 0.0014 26.9 2.3 22 65-88 22-43 (407)
32 3g3e_A D-amino-acid oxidase; F 23.2 43 0.0015 26.1 2.3 20 70-89 2-21 (351)
33 2gag_B Heterotetrameric sarcos 23.0 47 0.0016 26.1 2.5 21 69-89 22-42 (405)
34 2gf3_A MSOX, monomeric sarcosi 22.7 49 0.0017 25.8 2.6 21 69-89 4-24 (389)
35 1c0p_A D-amino acid oxidase; a 22.5 44 0.0015 26.2 2.3 20 69-88 7-26 (363)
36 2i9n_A MHB4A peptide; beta-hai 22.5 45 0.0015 18.6 1.6 16 75-90 14-29 (33)
37 2v8p_A 4-diphosphocytidyl-2-C- 22.5 2.6E+02 0.0088 21.3 7.4 33 66-99 81-116 (271)
38 4hb9_A Similarities with proba 21.5 48 0.0016 25.9 2.3 20 69-88 2-21 (412)
39 2uzz_A N-methyl-L-tryptophan o 21.3 48 0.0016 25.8 2.2 20 69-88 3-22 (372)
40 2p0g_A Selenoprotein W-related 21.2 73 0.0025 22.3 3.0 22 21-42 35-59 (105)
41 1rp0_A ARA6, thiazole biosynth 20.8 56 0.0019 25.1 2.5 20 69-88 40-59 (284)
42 3c96_A Flavin-containing monoo 20.6 50 0.0017 26.5 2.3 19 70-88 6-24 (410)
43 2x3n_A Probable FAD-dependent 20.3 57 0.0019 25.9 2.5 20 69-88 7-26 (399)
44 3nh6_A ATP-binding cassette SU 20.1 52 0.0018 26.6 2.3 47 66-115 179-235 (306)
No 1
>3u5c_Q RP61R, 40S ribosomal protein S16-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_I 3o30_J 3o2z_J 3u5g_Q 1s1h_I 3jyv_I*
Probab=100.00 E-value=3.9e-64 Score=384.58 Aligned_cols=140 Identities=68% Similarity=1.108 Sum_probs=137.2
Q ss_pred CCeEeEeeeccceEEEEEEEeCceeEEEcCeeccccCcHHHHHHhhhhHHhhcccccceeceEEEEecCcccchHHHHHH
Q 032125 8 TESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQ 87 (147)
Q Consensus 8 ~~~~~~~GrRKta~A~v~l~~G~G~i~INg~~l~~y~~~~~r~~i~~PL~~~~~~~~~~~di~v~V~GGG~~gQa~Air~ 87 (147)
.++++++||||||+|+|+|.||+|+|+|||+|+++||+++++++|++||.+++.+.+++|||+|+|+|||+||||+||||
T Consensus 4 ~~~v~~~GrRKtAvArv~l~~G~G~i~VNg~~l~~y~~~~~r~~v~~Pl~l~~~~~~~~~Di~v~V~GGG~sgQA~AiR~ 83 (143)
T 3u5c_Q 4 VPSVQTFGKKKSATAVAHVKAGKGLIKVNGSPITLVEPEILRFKVYEPLLLVGLDKFSNIDIRVRVTGGGHVSQVYAIRQ 83 (143)
T ss_dssp CCEEEEEECSTTCEEEEEEEECSCCEEETTEETTTCSSCSTHHHHHHHHHHTCSTTSTTEEEEEEEESSCHHHHHHHHHH
T ss_pred cceEEEeccCcceEEEEEEEeCceEEEECCCcHHHHChHHHHHHHHHHHHHHhhhccCceeEEEEEECCCEecHHhHHHH
Confidence 68899999999999999999999999999999999999889999999999999877899999999999999999999999
Q ss_pred HHHHHHHHhhhhcCChhhHHHHHHHhhhcCCCceeccCCCcccCCCCccccccCcccccC
Q 032125 88 SIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 147 (147)
Q Consensus 88 aiAraL~~~~~~~~~~~~r~~Lk~~l~~yd~glLt~D~R~~ERKK~G~~kARk~~Q~SkR 147 (147)
||||||++|+++|+||+.++.||++|++||+||||+|||+|||||||++|||++||||||
T Consensus 84 aIArAL~~~~~~~vd~~~r~~LK~~l~~yD~glLtrD~R~~ErKK~G~~kARk~~Q~SkR 143 (143)
T 3u5c_Q 84 AIAKGLVAYHQKYVDEQSKNELKKAFTSYDRTLLIADSRRPEPKKFGGKGARSRFQKSYR 143 (143)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSTTSCCCCCCCCCCSSSSSSSCCCCCCCC
T ss_pred HHHHHHHHHhhhcCCHHHHHHHHHHHHhccCCCCcCCCcccccCCCCCcccccccccccC
Confidence 999999999999999999999999999999999999999999999999999999999998
No 2
>2xzm_I RPS16E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_I
Probab=100.00 E-value=1.8e-61 Score=370.47 Aligned_cols=140 Identities=61% Similarity=1.041 Sum_probs=133.9
Q ss_pred CCCeEeEeeeccceEEEEEEEeCceeEEEcCeeccccC-cHHHHHHhhhhHHhhcccccceeceEEEEecCcccchHHHH
Q 032125 7 KTESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVE-PEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAI 85 (147)
Q Consensus 7 ~~~~~~~~GrRKta~A~v~l~~G~G~i~INg~~l~~y~-~~~~r~~i~~PL~~~~~~~~~~~di~v~V~GGG~~gQa~Ai 85 (147)
..+.++++||||||+|+|+|.||+|+|+|||+|++ || ++.++++|++||.+++.+.+++|||+|+|+|||+||||+||
T Consensus 5 ~~~~~~~~GrRKtAvArv~l~~G~G~i~VNg~~l~-yf~~~~~r~~v~~Pl~l~~~~~~~~~Di~v~V~GGG~sgQA~Ai 83 (145)
T 2xzm_I 5 KPQLVQTFGRKKNAVAVASVRPGKGLLKVNGSPID-MINPQILQAKIYEPILLLGQQKFANLDIRIRVRGSGYTSQVYAI 83 (145)
T ss_dssp CCSCEEEEEEETTEEEEEEEEESSCEEEESSSBGG-GCSSTTTHHHHHHHHHHHCHHHHHHEEEEEEECCSSHHHHHHHH
T ss_pred CccEEEEEeECCCEEEEEEEEeCceEEEECCEeHH-HcCcHHHHHHHHHHHHHhChhhhCceeEEEEEEcCCeecHHHHH
Confidence 45889999999999999999999999999999999 66 47899999999999985456899999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCChhhHHHHHHHhhhcCCCceeccCCCcccCCCCccccccCcccccC
Q 032125 86 RQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 147 (147)
Q Consensus 86 r~aiAraL~~~~~~~~~~~~r~~Lk~~l~~yd~glLt~D~R~~ERKK~G~~kARk~~Q~SkR 147 (147)
||||||||++|+++|+||+.++.||++|++||+||||+|||++||||||++|||++||||||
T Consensus 84 R~aIArAL~~~~~k~~d~~~r~~Lk~~l~~ydrglLtrD~R~~ErKK~G~~kARk~~Q~SkR 145 (145)
T 2xzm_I 84 RQALSKGIVAYHAKYVDENSKREIKEQLMQYDRSLLVADPRRMEPKKCGGRGARSKMQKAYR 145 (145)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCSTTTSCBCCCCCCCCTTSSSSSCCCCCCCC
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcCCCcCcCCCcccccCcCCCcccccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999998
No 3
>2zkq_i 40S ribosomal protein S16E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=7e-62 Score=373.12 Aligned_cols=142 Identities=75% Similarity=1.220 Sum_probs=132.0
Q ss_pred CCCCeEeEeeeccceEEEEEEEeCceeEEEcCeeccccCcHHHHHHhhhhHHhhcccccceeceEEEEecCcccchHHHH
Q 032125 6 PKTESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAI 85 (147)
Q Consensus 6 ~~~~~~~~~GrRKta~A~v~l~~G~G~i~INg~~l~~y~~~~~r~~i~~PL~~~~~~~~~~~di~v~V~GGG~~gQa~Ai 85 (147)
...++++++||||||+|+|+|.||+|+|+|||+|+++|.++.++++|++||.+++.+.+++|||+|+|+|||+||||+||
T Consensus 5 ~~~~~~~~~GrRKtAvArv~l~~G~G~i~VNg~~leyf~~~~~r~~v~~Pl~l~~~~~~~~~Di~v~V~GGG~sgQA~Ai 84 (146)
T 2zkq_i 5 GPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAI 84 (146)
T ss_dssp ---CCEEECCBCSSCEEEEEEEESSSCEEETTEEHHHHSTTSCCGGGGHHHHHTSSCTTSSEEEEEEEESSCHHHHHHHH
T ss_pred CCCceEEEEeeCCCeEEEEEEEcCCeeEEEcCcCHHHcCcHHHHHHHHHHHHHhCccccCceEEEEEEEcCCeehHHHHH
Confidence 34689999999999999999999999999999999534457899999999999997667999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCChhhHHHHHHHhhhcCCCceeccCCCcccCCCCccccccCcccccC
Q 032125 86 RQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 147 (147)
Q Consensus 86 r~aiAraL~~~~~~~~~~~~r~~Lk~~l~~yd~glLt~D~R~~ERKK~G~~kARk~~Q~SkR 147 (147)
||||||||++|+++|+||+.++.||++|++||+||||+|||++||||||++|||++||||||
T Consensus 85 R~aIArAL~~~~~k~~d~~~r~~Lk~~~~~ydrglLtrD~R~~ErKK~G~~kARk~~Q~SkR 146 (146)
T 2zkq_i 85 RQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146 (146)
T ss_dssp HHHHHHHHHHHCTTCTTSSSCCCCCSCSSSCCCCCC-CCCCCCCCCCTTSTTSSCCCCCSCC
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcCCCcccCCCcccccCcCCCcccccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999998
No 4
>3j20_K 30S ribosomal protein S9P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=6.7e-59 Score=352.71 Aligned_cols=132 Identities=46% Similarity=0.813 Sum_probs=124.4
Q ss_pred CeEeEeeeccceEEEEEEEeCceeEEEcCeeccccCcHHHHHHhhhhHHhhcccccceeceEEEEecCcccchHHHHHHH
Q 032125 9 ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQS 88 (147)
Q Consensus 9 ~~~~~~GrRKta~A~v~l~~G~G~i~INg~~l~~y~~~~~r~~i~~PL~~~~~~~~~~~di~v~V~GGG~~gQa~Air~a 88 (147)
++++++||||||+|+|+|.||+|+|+|||+|+++|++++++++|++||.+++.+.+++|||+|+|+|||+||||+|||||
T Consensus 2 ~~v~~~GrRKtAvArv~l~~G~G~i~VNg~~l~~y~~~~~r~~i~~Pl~l~~~~~~~~~Di~v~V~GGG~~gQA~AiR~a 81 (135)
T 3j20_K 2 RIIQTTGKRKTAIARAVIREGKGRVRINGKPVEIIEPEIARFTILEPLILAGEEIWNSVDIDVKVEGGGFMGQAEAARMA 81 (135)
T ss_dssp CCEEEEEEETTEEEEEEEEESSCCEEETTEEGGGCSCSHHHHHHSHHHHHHCHHHHHHEEEEEEEECSCHHHHHHHHHHH
T ss_pred cEEEEeCcCccEEEEEEEEeCceEEEECCeeHHHHChHHHHHHhhCChhhcchhhcccccEEEEEECCCEechHhHHHHH
Confidence 57899999999999999999999999999999999999999999999999985556999999999999999999999999
Q ss_pred HHHHHHHhhhhcCChhhHHHHHHHhhhcCCCceeccCCCcccCCCCc--cccccCcccccC
Q 032125 89 IAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGG--RGARARFQKSYR 147 (147)
Q Consensus 89 iAraL~~~~~~~~~~~~r~~Lk~~l~~yd~glLt~D~R~~ERKK~G~--~kARk~~Q~SkR 147 (147)
|||||++|++ + ++||+.|++||+||||+|||+|||||||+ +|||++||||||
T Consensus 82 IarAL~~~~~---~----~~lr~~l~~~d~glLtrD~R~~ErKK~G~~~~kARk~~Q~SkR 135 (135)
T 3j20_K 82 IARALVEWTG---D----MSLKEKFMKYDRTMLVGDPRRTEPHKPNRSTKGPRAKRQKSYR 135 (135)
T ss_dssp HHHHHHHHHC---C----HHHHHHHHHHCSTTTCCCSCCCCCCCCCSSCSSSSCCCCCCCC
T ss_pred HHHHHHHhcc---C----HHHHHHHHhccCCCccCCCccccccccCCCCCCCccccccccC
Confidence 9999999964 2 46888888899999999999999999999 999999999998
No 5
>3iz6_I 40S ribosomal protein S16 (S9P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1e-63 Score=384.43 Aligned_cols=141 Identities=82% Similarity=1.334 Sum_probs=123.3
Q ss_pred CCCeEeEeeeccceEEEEEEEeCceeEEEcCeeccccCcHHHHHHhhhhHHhhcccccceeceEEEEecCcccchHHHHH
Q 032125 7 KTESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIR 86 (147)
Q Consensus 7 ~~~~~~~~GrRKta~A~v~l~~G~G~i~INg~~l~~y~~~~~r~~i~~PL~~~~~~~~~~~di~v~V~GGG~~gQa~Air 86 (147)
..++++++||||||+|+|+|.||+|+|+|||+|+++||++.++++|++||.+++.+.+++|||+|+|+|||+||||+|||
T Consensus 9 ~~~~v~~~GrRKtAvArv~l~~G~G~i~VNg~~l~~y~~~~~r~~v~~Pl~l~~~~~~~~~DI~v~V~GGG~sgQA~AiR 88 (149)
T 3iz6_I 9 PPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQIYAIR 88 (149)
T ss_dssp ---------------CCCCCCCCCCSSSEECCCCCCSSCCEEESSSBHHHHTCSCHHHHHHHTTTTTTSCSTTCCEEECE
T ss_pred CccEEEEeccCcceEEEEEEEeCcEEEEECCCcHHHHChHHHHHHHHHHHHHHhHhccCceeEEEEEeCCCeecHHHHHH
Confidence 45689999999999999999999999999999999999988899999999999987678999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCChhhHHHHHHHhhhcCCCceeccCCCcccCCCCccccccCcccccC
Q 032125 87 QSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 147 (147)
Q Consensus 87 ~aiAraL~~~~~~~~~~~~r~~Lk~~l~~yd~glLt~D~R~~ERKK~G~~kARk~~Q~SkR 147 (147)
|||||||++|+++|+||+.++.||++|++||+||||+|||+|||||||++|||++||||||
T Consensus 89 ~gIArALv~~~~~~vd~~~r~~LK~~l~~yD~glLtrD~R~~ERKK~G~~kARk~~Q~SkR 149 (149)
T 3iz6_I 89 QAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 149 (149)
T ss_dssp ESSCTTTHHHHHHHHHHHHHHHHCSSTHHHHTTTCCCCCCCCSCCCCCTTBSSSSSBCSCC
T ss_pred HHHHHHHHHHhhhcCCHHHHHHHHHHHHhccCCCCcCCCcccccCCCCCcccccccccccC
Confidence 9999999999999999999999999999999999999999999999999999999999998
No 6
>2vqe_I 30S ribosomal protein S9, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.14.1.1 PDB: 1gix_L* 1hnw_I* 1hnx_I* 1hnz_I* 1hr0_I 1i94_I* 1i95_I* 1i96_I* 1i97_I* 1ibk_I* 1ibl_I* 1ibm_I 1j5e_I 1jgo_L* 1jgp_L* 1jgq_L* 1ml5_L* 1n32_I* 1n33_I* 1n34_I ...
Probab=100.00 E-value=6.3e-57 Score=339.21 Aligned_cols=124 Identities=33% Similarity=0.476 Sum_probs=117.7
Q ss_pred EeEeeeccceEEEEEEEeCceeEEEcCeeccccCc-HHHHHHhhhhHHhhcccccceeceEEEEecCcccchHHHHHHHH
Q 032125 11 VQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEP-EILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSI 89 (147)
Q Consensus 11 ~~~~GrRKta~A~v~l~~G~G~i~INg~~l~~y~~-~~~r~~i~~PL~~~~~~~~~~~di~v~V~GGG~~gQa~Air~ai 89 (147)
++++||||||+|+|+|.||+|+|+|||+|+++||+ +.++++|++||.+++. +++|||+|+|+|||+||||+||||||
T Consensus 4 ~~~~GrRKtavArv~l~~G~G~i~VNg~~l~~yf~~~~~r~~v~~Pl~~~~~--~~~~Di~v~V~GGG~sgQA~AiR~gI 81 (128)
T 2vqe_I 4 YYGTGRRKEAVARVFLRPGNGKVTVNGQDFNEYFQGLVRAVAALEPLRAVDA--LGRFDAYITVRGGGKSGQIDAIKLGI 81 (128)
T ss_dssp EEECCEETTEEEEEEEEESSCCEEESSSBHHHHSSSCSSGGGGGHHHHHHTC--STTEEEEEEEESSCHHHHHHHHHHHH
T ss_pred cEEeCcCCCEEEEEEEEcCceEEEECCCcHHHHcCCHHHHHHHHhHHHHHcc--cCceeEEEEEEcCCeehHHHHHHHHH
Confidence 68999999999999999999999999999999886 6789999999999986 49999999999999999999999999
Q ss_pred HHHHHHhhhhcCChhhHHHHHHHhhhcCCCceeccCCCcccCCCCccccccCcccccC
Q 032125 90 AKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 147 (147)
Q Consensus 90 AraL~~~~~~~~~~~~r~~Lk~~l~~yd~glLt~D~R~~ERKK~G~~kARk~~Q~SkR 147 (147)
||||++| ||+.++.||+. ||||+|||+|||||||++||||+||||||
T Consensus 82 arAL~~~-----~~~~r~~Lk~~------glLtrD~R~~ErKK~G~~kARk~~Q~SkR 128 (128)
T 2vqe_I 82 ARALVQY-----NPDYRAKLKPL------GFLTRDARVVERKKYGKHKARRAPQYSKR 128 (128)
T ss_dssp HHHHHHH-----CGGGHHHHTTT------TTTSCBCCCCCCCCSSSSBTTBCCCCCCC
T ss_pred HHHHHHH-----CHHHHHHHHHC------CCccCCccccCcCcCCCcccccccccccC
Confidence 9999998 67778888876 99999999999999999999999999998
No 7
>3r8n_I 30S ribosomal protein S9; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_I 3fih_I* 3iy8_I 3j18_I* 2wwl_I 3oar_I 3oaq_I 3ofb_I 3ofa_I 3ofp_I 3ofx_I 3ofy_I 3ofo_I 3r8o_I 4a2i_I 4gd1_I 4gd2_I 2qal_I* 1p6g_I 1p87_I ...
Probab=100.00 E-value=5.1e-57 Score=339.32 Aligned_cols=125 Identities=36% Similarity=0.480 Sum_probs=117.8
Q ss_pred eEeEeeeccceEEEEEEEeCceeEEEcCeeccccCc-HHHHHHhhhhHHhhcccccceeceEEEEecCcccchHHHHHHH
Q 032125 10 SVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEP-EILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQS 88 (147)
Q Consensus 10 ~~~~~GrRKta~A~v~l~~G~G~i~INg~~l~~y~~-~~~r~~i~~PL~~~~~~~~~~~di~v~V~GGG~~gQa~Air~a 88 (147)
..+++||||||+|+|+|.||+|+|+|||+|+++||+ +.++++|++||.+++. +++|||+|+|+|||+||||+|||||
T Consensus 2 ~~~~~GrRKtavArv~l~~G~G~i~VNg~~l~~yf~~~~~r~~v~~Pl~~~~~--~~~~Di~v~V~GGG~~gQa~Air~a 79 (127)
T 3r8n_I 2 QYYGTGRRKSSAARVFIKPGNGKIVINQRSLEQYFGRETARMVVRQPLELVDM--VEKLDLYITVKGGGISGQAGAIRHG 79 (127)
T ss_dssp CEEECCCCTTCEEEEEEEESCSCEEETTBCSTTTTTTSTTTTTTTGGGSSSCC--SSSEEEEEEEESSCHHHHHHHHHHH
T ss_pred cceeECCCeeEEEEEEEEeCcEEEEECCEeHHHHcCCHHHHHHHHHHHHHhCc--cCccceEEEEECCCeecHHHHHHHH
Confidence 468999999999999999999999999999999887 6789999999999984 5999999999999999999999999
Q ss_pred HHHHHHHhhhhcCChhhHHHHHHHhhhcCCCceeccCCCcccCCCCccccccCcccccC
Q 032125 89 IAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 147 (147)
Q Consensus 89 iAraL~~~~~~~~~~~~r~~Lk~~l~~yd~glLt~D~R~~ERKK~G~~kARk~~Q~SkR 147 (147)
|||||++| ||++|+.||+. ||||+|||+|||||||++||||+||||||
T Consensus 80 IarAL~~~-----d~~~r~~Lk~~------glLtrD~R~~ErKK~G~~kARk~~Q~SkR 127 (127)
T 3r8n_I 80 ITRALMEY-----DESLRSELRKA------GFVTRDARQVERKKVGLRKARRRPQFSKR 127 (127)
T ss_dssp HHTTTTTT-----CSSSTTTTTTT------TTTSCCCCCCCCCCTTSSBTTBCCCCCCC
T ss_pred HHHHHHHH-----CHHHHHHHHHC------CCcccCCcccccCcCCCccccccccccCC
Confidence 99999998 66777778875 99999999999999999999999999998
No 8
>3bbn_I Ribosomal protein S9; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=8.5e-54 Score=340.68 Aligned_cols=127 Identities=29% Similarity=0.322 Sum_probs=117.1
Q ss_pred CCeEeEeeeccceEEEEEEEeCceeEEEcCeeccccCc--HHHHHHhhhhHHhhcccccceeceEEEEecCcccchHHHH
Q 032125 8 TESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEP--EILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAI 85 (147)
Q Consensus 8 ~~~~~~~GrRKta~A~v~l~~G~G~i~INg~~l~~y~~--~~~r~~i~~PL~~~~~~~~~~~di~v~V~GGG~~gQa~Ai 85 (147)
.+.++++||||+|+|+|+|.+|+|+|+|||+|+++||+ ..++++|++||.+++.+ ++|||+|+|+|||++|||+||
T Consensus 69 ~~~~~~tGRRKtAvArV~l~~G~G~I~VNg~~l~~YF~~~~~~~~~v~~PL~l~~~~--~k~DI~v~V~GGG~sGQA~AI 146 (197)
T 3bbn_I 69 AQTVIGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYVKTPLATLGYE--TNYDVFVKAHGGGLSGQAQAI 146 (197)
T ss_dssp --CBCCCCEETTEEEEEEEEESSCCEEETTEEHHHHSCSCCGGGTTTSHHHHTTTCT--TTEEEEEEEESSCHHHHHHHH
T ss_pred ccEEEEEeeCCceEEEEEEEcCceeEEECCCcHHHHcCccHHHHHHHHHHHHHhCcc--CceeEEEEEecCCeehHHHHH
Confidence 45678999999999999999999999999999999995 34457899999999965 899999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCChhhHHHHHHHhhhcCCCceeccCCCcccCCCCccccccCcccccC
Q 032125 86 RQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 147 (147)
Q Consensus 86 r~aiAraL~~~~~~~~~~~~r~~Lk~~l~~yd~glLt~D~R~~ERKK~G~~kARk~~Q~SkR 147 (147)
||||||||++| |++.|+.||+. ||||+|||+|||||||++||||+||||||
T Consensus 147 R~gIARALv~~-----~~~~r~~LK~~------GlLTrD~R~~ERKK~G~kkARk~~Q~SKR 197 (197)
T 3bbn_I 147 SLGVARALLKV-----SASHRAPLKQE------GLLTRDSRIVERKKPGLKKARKAPQFSKR 197 (197)
T ss_dssp HHHHHHHTTTS-----CGGGSHHHHTT------TCSSCCCCCCCCCCTTSSSTTCCCCCCCC
T ss_pred HHHHHHHHHHH-----CHHHHHHHHHC------CCccCCCcccccCcCCcccccccccccCC
Confidence 99999999998 66778899986 99999999999999999999999999998
No 9
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=84.17 E-value=0.77 Score=44.49 Aligned_cols=48 Identities=33% Similarity=0.462 Sum_probs=30.6
Q ss_pred ceeceEEEEecCccc-chHHHHHHHHHHHHHHhhhh---------cCChhhHHHHHHHhhh
Q 032125 65 NGVDMRIRVKGGGHT-SQIYAIRQSIAKALVAFYQK---------YVDEQSKKEIKDILVR 115 (147)
Q Consensus 65 ~~~di~v~V~GGG~~-gQa~Air~aiAraL~~~~~~---------~~~~~~r~~Lk~~l~~ 115 (147)
+.||-.|--+|..+| ||.+ |+||||||+. +|. -.|++....+.+.|.+
T Consensus 1205 ~GldT~vge~G~~LSgGQrQ--riaiARAllr-~~~ILiLDEaTSaLD~~tE~~Iq~~l~~ 1262 (1321)
T 4f4c_A 1205 EGFETRVGDRGTQLSGGQKQ--RIAIARALVR-NPKILLLDEATSALDTESEKVVQEALDR 1262 (1321)
T ss_dssp TTTCSEETTTSCSSCHHHHH--HHHHHHHHHS-CCSEEEEESCCCSTTSHHHHHHHHHHTT
T ss_pred CCCCCEecCCCcccCHHHHH--HHHHHHHHHh-CCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 457776655555555 5776 9999999986 333 2355555556665544
No 10
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=73.72 E-value=1.7 Score=42.12 Aligned_cols=29 Identities=34% Similarity=0.417 Sum_probs=22.3
Q ss_pred ceeceEEEEecCcccc-hHHHHHHHHHHHHHH
Q 032125 65 NGVDMRIRVKGGGHTS-QIYAIRQSIAKALVA 95 (147)
Q Consensus 65 ~~~di~v~V~GGG~~g-Qa~Air~aiAraL~~ 95 (147)
+.+|-.|--+|..+|| |-+ |.||||||+.
T Consensus 542 ~G~~T~vGe~G~~LSGGQkQ--RiaiARAl~~ 571 (1321)
T 4f4c_A 542 NGYNTLVGDRGTQLSGGQKQ--RIAIARALVR 571 (1321)
T ss_dssp TTTSSEESSSSCCCCHHHHH--HHHHHHHHTT
T ss_pred CCCccEecCCCCCCCHHHHH--HHHHHHHHcc
Confidence 4677777777777774 555 9999999986
No 11
>1rre_A ATP-dependent protease LA; catalytic Ser-Lys DYAD, hydrolase; HET: MSE; 1.75A {Escherichia coli} SCOP: d.14.1.10 PDB: 1rr9_A*
Probab=66.65 E-value=7.4 Score=29.98 Aligned_cols=70 Identities=23% Similarity=0.349 Sum_probs=39.0
Q ss_pred EEEEEeCceeEEEcCeeccccCcHHHHHHhhhhHH----hhcc--cccceeceEEEEecCcc--cchHHHHHHHHHHHHH
Q 032125 23 VTYCKRGRGLIKINGCPIELVEPEILRFKAFEPIL----LLGR--HRFNGVDMRIRVKGGGH--TSQIYAIRQSIAKALV 94 (147)
Q Consensus 23 ~v~l~~G~G~i~INg~~l~~y~~~~~r~~i~~PL~----~~~~--~~~~~~di~v~V~GGG~--~gQa~Air~aiAraL~ 94 (147)
.|.+.+|.|.+.+.|.+-....... +.+..-+. -.+. +.+...||++++-+|.. .|-+ .-++||-||+
T Consensus 30 E~~~~~G~g~~~itG~~~~~~kES~--~~a~s~~~~~~~~~g~~~~~~~~~di~vnl~~g~~~k~Gps--adLaia~Ail 105 (200)
T 1rre_A 30 ETACVPGKGKLTYTGSLGEVMQESI--QAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPA--AGIAMCTALV 105 (200)
T ss_dssp EEEEEECSSCEEEESSBCHHHHHHH--HHHHHHHHHTHHHHTCCTTTTTSEEEEEECSSTTSCEESST--THHHHHHHHH
T ss_pred EEEEeCCCceEEEecCchHHHHHHH--HHHHHHHHHhHHhcCCCcccCCcceEEEEeCCccccCCCCc--chHHHHHHHH
Confidence 3445689999999997654443211 11222221 2222 12578999999988765 3433 3455555555
Q ss_pred Hh
Q 032125 95 AF 96 (147)
Q Consensus 95 ~~ 96 (147)
.-
T Consensus 106 Sa 107 (200)
T 1rre_A 106 SC 107 (200)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 12
>2x36_A LON protease homolog, mitochondrial; hydrolase, catalytic DYAD, transit peptide; 2.00A {Homo sapiens}
Probab=66.09 E-value=5.3 Score=31.04 Aligned_cols=69 Identities=14% Similarity=0.095 Sum_probs=36.2
Q ss_pred eCceeEEEcCeeccccCcH--HHHHHhh-hhHHhhcc-cccceeceEEEEecCcccchHHHHHHHHHHHHHHh
Q 032125 28 RGRGLIKINGCPIELVEPE--ILRFKAF-EPILLLGR-HRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAF 96 (147)
Q Consensus 28 ~G~G~i~INg~~l~~y~~~--~~r~~i~-~PL~~~~~-~~~~~~di~v~V~GGG~~gQa~Air~aiAraL~~~ 96 (147)
+|+|.+.+.|.+-+..... ..+.-+. ..+.+... ..+...||+|++-||-..-.--+.-++||-||+.-
T Consensus 43 ~g~g~~~itG~~~~~~kES~~~a~s~~~~~~~~~~~~~~~~~~~di~vnl~~g~~~K~GpsadLaia~AilSa 115 (207)
T 2x36_A 43 DKDGSLEVTGQLGEVMKESARIAYTFARAFLMQHAPANDYLVTSHIHLHVPEGATPKDGPSAGCTIVTALLSL 115 (207)
T ss_dssp ---CEEEEESCCCHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHCEEEEECCSCBCTTTGGGGHHHHHHHHHHH
T ss_pred CCCCeEEEEeCchHHHHHHHHHHHHHHHhcccccccccccCccceEEEEeCCcccCCCCCcchHHHHHHHHHH
Confidence 7899999999765444321 1121111 12221111 12568899999998865533334456666666654
No 13
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=65.45 E-value=6.4 Score=34.28 Aligned_cols=74 Identities=19% Similarity=0.129 Sum_probs=38.8
Q ss_pred EEEEEeCceeEEEcCeeccccCcHHHH--HHhhhhHHhhccc--ccceeceEEEEecCcccchHHHHHHHHHHHHHHh
Q 032125 23 VTYCKRGRGLIKINGCPIELVEPEILR--FKAFEPILLLGRH--RFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAF 96 (147)
Q Consensus 23 ~v~l~~G~G~i~INg~~l~~y~~~~~r--~~i~~PL~~~~~~--~~~~~di~v~V~GGG~~gQa~Air~aiAraL~~~ 96 (147)
.|.+.+|.|.+.+.|.+-........+ ..+..-+.-++.+ .+...||+|+|-||.+--.=-+.=++||-||+.-
T Consensus 373 e~~~~~g~~~~~~~G~~~~~~~es~~~a~~~v~~~~~~~g~~~~~~~~~di~v~~~~g~~~k~gpsa~l~ia~ai~s~ 450 (543)
T 3m6a_A 373 EVSLSPGKGKLILTGKLGDVMRESAQAAFSYVRSKTEELGIEPDFHEKYDIHIHVPEGAVPKDGPAAGITMATALVSA 450 (543)
T ss_dssp EEEEESSCSCEEEEESCCHHHHHHHHHHHHHHTSSCGGGSSCSSCTTTCEEEEEECTTBCGGGGGGGHHHHHHHHHHH
T ss_pred EEEeeCCCCceEEecCchHHHHHHHHHHHHHHHHHHHHcCCCccccCCcceEEEeCCCCCCCCCchhHHHHHHHHHHH
Confidence 344558899999998754333211111 1122222222321 2568899999999852222123345555556543
No 14
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=61.75 E-value=4.2 Score=31.79 Aligned_cols=22 Identities=27% Similarity=0.289 Sum_probs=16.2
Q ss_pred ceeceEEEEecCcccchHHHHHHH
Q 032125 65 NGVDMRIRVKGGGHTSQIYAIRQS 88 (147)
Q Consensus 65 ~~~di~v~V~GGG~~gQa~Air~a 88 (147)
++|||. |-|||++|-+-|+.+|
T Consensus 3 e~yDVi--IVGaGpaGl~~A~~La 24 (397)
T 3oz2_A 3 ETYDVL--VVGGGPGGSTAARYAA 24 (397)
T ss_dssp EEEEEE--EECCSHHHHHHHHHHH
T ss_pred CCCCEE--EECcCHHHHHHHHHHH
Confidence 368854 5699999998776554
No 15
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=50.22 E-value=7.1 Score=27.11 Aligned_cols=19 Identities=21% Similarity=0.155 Sum_probs=14.8
Q ss_pred EEEecCcccchHHHHHHHH
Q 032125 71 IRVKGGGHTSQIYAIRQSI 89 (147)
Q Consensus 71 v~V~GGG~~gQa~Air~ai 89 (147)
|-|=|+|++|-+-|+.|+=
T Consensus 5 V~IIGaGpaGL~aA~~La~ 23 (336)
T 3kkj_A 5 IAIIGTGIAGLSAAQALTA 23 (336)
T ss_dssp EEEECCSHHHHHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHH
Confidence 6667999999998766543
No 16
>1xhk_A Putative protease LA homolog; LON protease, ATP dependent, catalytic DYAD, hydrolase; HET: MES; 1.90A {Methanocaldococcus jannaschii} SCOP: d.14.1.10
Probab=46.09 E-value=24 Score=26.50 Aligned_cols=33 Identities=9% Similarity=0.106 Sum_probs=21.5
Q ss_pred cceeceEEEEecCcccchHHHHHHHHHHHHHHh
Q 032125 64 FNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAF 96 (147)
Q Consensus 64 ~~~~di~v~V~GGG~~gQa~Air~aiAraL~~~ 96 (147)
+..+||++++-+|..--.=-+.-++||-||+.-
T Consensus 77 ~~~~di~vn~~~g~~~k~GpsadLaia~AilSa 109 (187)
T 1xhk_A 77 LNNKEIYIQFSQSYSKIDGDSATAAVCLAIISA 109 (187)
T ss_dssp STTEEEEEEESSCCCTTTGGGGHHHHHHHHHHH
T ss_pred CCCeeEEEEECCCCcCCcCchHHHHHHHHHHHH
Confidence 678999999998843333334456666666554
No 17
>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}
Probab=42.55 E-value=14 Score=28.31 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=18.5
Q ss_pred eeceEEEEecCcccchHHHHHHHH
Q 032125 66 GVDMRIRVKGGGHTSQIYAIRQSI 89 (147)
Q Consensus 66 ~~di~v~V~GGG~~gQa~Air~ai 89 (147)
++|.+|.|=|||..|-+-|++++-
T Consensus 4 e~~yDvvIIG~GpAGl~aA~~l~~ 27 (312)
T 4gcm_A 4 EIDFDIAIIGAGPAGMTAAVYASR 27 (312)
T ss_dssp CCSEEEEEECCSHHHHHHHHHHHH
T ss_pred CCCCCEEEECCCHHHHHHHHHHHH
Confidence 355667777999999998887753
No 18
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Probab=41.27 E-value=15 Score=30.28 Aligned_cols=22 Identities=27% Similarity=0.283 Sum_probs=17.9
Q ss_pred eceEEEEecCcccchHHHHHHH
Q 032125 67 VDMRIRVKGGGHTSQIYAIRQS 88 (147)
Q Consensus 67 ~di~v~V~GGG~~gQa~Air~a 88 (147)
-+++|.|-|||++|-+-|.+|+
T Consensus 9 ~~~DVvIIGaGisGLsaA~~L~ 30 (513)
T 4gde_A 9 ISVDVLVIGAGPTGLGAAKRLN 30 (513)
T ss_dssp EEEEEEEECCSHHHHHHHHHHH
T ss_pred CCCCEEEECCcHHHHHHHHHHH
Confidence 4566788899999999887764
No 19
>1z0w_A Putative protease LA homolog type; ATP-dependent protease, catalytic Ser-Lys DYAD, B-type LON, hydrolase; 1.20A {Archaeoglobus fulgidus} PDB: 1z0b_A 1z0c_A 1z0e_A 1z0g_A 1z0t_A 1z0v_A
Probab=39.25 E-value=13 Score=28.78 Aligned_cols=62 Identities=21% Similarity=0.224 Sum_probs=31.8
Q ss_pred eeEEEcCeeccccCcHHHHHHhhhhH-HhhcccccceeceEEEEecCcccchHHHHHHHHHHHHHH
Q 032125 31 GLIKINGCPIELVEPEILRFKAFEPI-LLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVA 95 (147)
Q Consensus 31 G~i~INg~~l~~y~~~~~r~~i~~PL-~~~~~~~~~~~di~v~V~GGG~~gQa~Air~aiAraL~~ 95 (147)
|.+.+.|.+-..... -++.++.-| ...+. .+..+||++++-+|..--.--+.-++||-||+.
T Consensus 44 p~~~~~G~~~~~~~e--s~~~v~a~l~~~~g~-~~~~~di~vnl~~g~~~k~GpsadLaia~AilS 106 (207)
T 1z0w_A 44 GRVIATGRLQEIARE--AVMNVSAIIKKYTGR-DISNMDVHIQFVGTYEGVEGDSASISIATAVIS 106 (207)
T ss_dssp CCEECCSTTHHHHHH--HHHHHHHHHHHHHCC-CGGGEEEEEEESSCCTTEECCTTBHHHHHHHHH
T ss_pred CeEEEeCCchhhhHH--HHHHHHHHHHHhcCC-CCCCceEEEEEecccccccCCcchHHHHHHHHH
Confidence 667777754221211 112233444 33454 368999999999883222222234445555544
No 20
>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}
Probab=32.04 E-value=24 Score=30.81 Aligned_cols=24 Identities=25% Similarity=0.248 Sum_probs=20.8
Q ss_pred ceeceEEEEecCcccchHHHHHHH
Q 032125 65 NGVDMRIRVKGGGHTSQIYAIRQS 88 (147)
Q Consensus 65 ~~~di~v~V~GGG~~gQa~Air~a 88 (147)
..||.++.|=|||..|..-|++.|
T Consensus 39 ~~ydYDviVIG~GpaG~~aA~~aa 62 (542)
T 4b1b_A 39 HTYDYDYVVIGGGPGGMASAKEAA 62 (542)
T ss_dssp CCSSEEEEEECCSHHHHHHHHHHH
T ss_pred CCCCCCEEEECCCHHHHHHHHHHH
Confidence 468888999999999999998865
No 21
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Probab=29.04 E-value=32 Score=26.42 Aligned_cols=21 Identities=19% Similarity=0.115 Sum_probs=16.4
Q ss_pred eEEEEecCcccchHHHHHHHH
Q 032125 69 MRIRVKGGGHTSQIYAIRQSI 89 (147)
Q Consensus 69 i~v~V~GGG~~gQa~Air~ai 89 (147)
.+|.|-|||++|-+-|..++=
T Consensus 5 ~dvvIIG~G~~Gl~~A~~La~ 25 (369)
T 3dme_A 5 IDCIVIGAGVVGLAIARALAA 25 (369)
T ss_dssp EEEEEECCSHHHHHHHHHHHH
T ss_pred CCEEEECCCHHHHHHHHHHHh
Confidence 347788999999988877653
No 22
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*
Probab=28.63 E-value=32 Score=27.34 Aligned_cols=21 Identities=24% Similarity=0.257 Sum_probs=16.4
Q ss_pred eEEEEecCcccchHHHHHHHH
Q 032125 69 MRIRVKGGGHTSQIYAIRQSI 89 (147)
Q Consensus 69 i~v~V~GGG~~gQa~Air~ai 89 (147)
.+|.|-|||++|-+-|..++=
T Consensus 5 ~DVvIIGaG~~Gl~~A~~La~ 25 (397)
T 2oln_A 5 YDVVVVGGGPVGLATAWQVAE 25 (397)
T ss_dssp EEEEEECCSHHHHHHHHHHHH
T ss_pred CCEEEECCCHHHHHHHHHHHH
Confidence 346778999999998877653
No 23
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=26.81 E-value=86 Score=26.57 Aligned_cols=20 Identities=15% Similarity=0.287 Sum_probs=16.0
Q ss_pred eEEEEecCcccchHHHHHHH
Q 032125 69 MRIRVKGGGHTSQIYAIRQS 88 (147)
Q Consensus 69 i~v~V~GGG~~gQa~Air~a 88 (147)
.+|.|-|||..|-+-|+.++
T Consensus 213 ~dVvIIGgG~AGl~aA~~la 232 (521)
T 1hyu_A 213 YDVLIVGSGPAGAAAAVYSA 232 (521)
T ss_dssp EEEEEECCSHHHHHHHHHHH
T ss_pred ccEEEECCcHHHHHHHHHHH
Confidence 34778899999999887764
No 24
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1, geranylgeranyl bacteriochlorophyll reductase- like FIXC homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma acidophilum dsm 1728} PDB: 3oz2_A*
Probab=26.05 E-value=38 Score=26.53 Aligned_cols=19 Identities=26% Similarity=0.296 Sum_probs=14.9
Q ss_pred EEEEecCcccchHHHHHHH
Q 032125 70 RIRVKGGGHTSQIYAIRQS 88 (147)
Q Consensus 70 ~v~V~GGG~~gQa~Air~a 88 (147)
+|.|-|||++|-+-|+.++
T Consensus 6 dVvIvG~G~aGl~~A~~La 24 (397)
T 3cgv_A 6 DVLVVGGGPGGSTAARYAA 24 (397)
T ss_dssp EEEEECCSHHHHHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHH
Confidence 4667799999998876654
No 25
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Probab=25.58 E-value=39 Score=26.92 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=15.5
Q ss_pred eEEEEecCcccchHHHHHHH
Q 032125 69 MRIRVKGGGHTSQIYAIRQS 88 (147)
Q Consensus 69 i~v~V~GGG~~gQa~Air~a 88 (147)
.+|.|-|||++|-+-|+.++
T Consensus 6 ~dVvIIGgG~aGl~~A~~La 25 (421)
T 3nix_A 6 VDVLVIGAGPAGTVAASLVN 25 (421)
T ss_dssp EEEEEECCSHHHHHHHHHHH
T ss_pred CcEEEECCCHHHHHHHHHHH
Confidence 44677799999998887654
No 26
>3mx7_A FAS apoptotic inhibitory molecule 1; beta sheet, apoptosis; 1.76A {Homo sapiens}
Probab=25.23 E-value=59 Score=22.36 Aligned_cols=32 Identities=22% Similarity=0.224 Sum_probs=20.9
Q ss_pred EeEeeeccceEEEEEEEeCce-----eEEEcCeecccc
Q 032125 11 VQCFGRKKTAVAVTYCKRGRG-----LIKINGCPIELV 43 (147)
Q Consensus 11 ~~~~GrRKta~A~v~l~~G~G-----~i~INg~~l~~y 43 (147)
.+.+|..| ..|.+++.+.+| ...|||+++++|
T Consensus 53 ~F~ig~~~-~k~~I~I~a~~~~~y~YtL~VngKslk~f 89 (90)
T 3mx7_A 53 TFYVGAAK-TKATINIDAISGFAYEYTLEINGKSLKKY 89 (90)
T ss_dssp EEEETTTT-EEEEEEEEEETTTEEEEEEEETTEEEEEC
T ss_pred eEEECCcc-eEEEEEEEecCCccEEEEEEECCEeHHHc
Confidence 34466533 346666765443 378999999987
No 27
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Probab=25.16 E-value=40 Score=26.35 Aligned_cols=22 Identities=23% Similarity=0.191 Sum_probs=16.9
Q ss_pred ceEEEEecCcccchHHHHHHHH
Q 032125 68 DMRIRVKGGGHTSQIYAIRQSI 89 (147)
Q Consensus 68 di~v~V~GGG~~gQa~Air~ai 89 (147)
+.+|.|-|||++|-+-|..++=
T Consensus 17 ~~dvvIIGgG~~Gl~~A~~La~ 38 (382)
T 1ryi_A 17 HYEAVVIGGGIIGSAIAYYLAK 38 (382)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH
T ss_pred CCCEEEECcCHHHHHHHHHHHh
Confidence 4456777999999998877653
No 28
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=25.08 E-value=1.2e+02 Score=26.41 Aligned_cols=61 Identities=16% Similarity=0.170 Sum_probs=32.6
Q ss_pred ceeEEEcCeeccccCcHHHHHHhhhhHHh-hcccccceeceEEEEecCc--ccchHHHHHHHHHHHHHH
Q 032125 30 RGLIKINGCPIELVEPEILRFKAFEPILL-LGRHRFNGVDMRIRVKGGG--HTSQIYAIRQSIAKALVA 95 (147)
Q Consensus 30 ~G~i~INg~~l~~y~~~~~r~~i~~PL~~-~~~~~~~~~di~v~V~GGG--~~gQa~Air~aiAraL~~ 95 (147)
+|.+.+.|.+-+...... +.++.-|.- .+. .+..+||+|++-||- ..|-+ .-+|||-||+.
T Consensus 434 ~g~~~~~g~~~~~~~es~--~~~~~~l~~~~~~-~~~~~~i~i~~~~~~~~~~gps--a~l~~~~ai~s 497 (604)
T 3k1j_A 434 EGKIIVTGKLGEIAKEAV--QNVSAIIKRYKGE-DISRYDIHVQFLQTYEGVEGDA--ASISVATAVIS 497 (604)
T ss_dssp BCCEEEESCBCHHHHHHH--HHHHHHHHHHHCG-GGGGEEEEEEETTCTTCBCSST--THHHHHHHHHH
T ss_pred CCEEEEecChHHHHHHHH--HHHHHHHHhhhcc-CCCCCcEEEEEcCCcccCCCcc--chHHHHHHHHH
Confidence 467888887643322111 112222322 343 367899999998875 34433 23444555544
No 29
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Probab=24.90 E-value=39 Score=28.58 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=18.5
Q ss_pred eeceEEEEecCcccchHHHHHHHH
Q 032125 66 GVDMRIRVKGGGHTSQIYAIRQSI 89 (147)
Q Consensus 66 ~~di~v~V~GGG~~gQa~Air~ai 89 (147)
+.+..|.|-|||++|-+-|+.++-
T Consensus 10 ~~~~dVlIVGaGpaGl~~A~~La~ 33 (499)
T 2qa2_A 10 RSDASVIVVGAGPAGLMLAGELRL 33 (499)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHH
T ss_pred CCCCCEEEECcCHHHHHHHHHHHH
Confidence 456678888999999998876653
No 30
>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}
Probab=24.26 E-value=25 Score=27.53 Aligned_cols=25 Identities=12% Similarity=0.093 Sum_probs=20.0
Q ss_pred ceEEEEecCcccchHHHHHHHHHHH
Q 032125 68 DMRIRVKGGGHTSQIYAIRQSIAKA 92 (147)
Q Consensus 68 di~v~V~GGG~~gQa~Air~aiAra 92 (147)
|.+|.|=|||..|-+-|+.+|-+|+
T Consensus 65 ~~DV~IIGaGPAGlsAA~~la~~r~ 89 (326)
T 3fpz_A 65 VSDVIIVGAGSSGLSAAYVIAKNRP 89 (326)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHCT
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCC
Confidence 3446778999999999999987653
No 31
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*
Probab=23.46 E-value=41 Score=26.90 Aligned_cols=22 Identities=18% Similarity=0.120 Sum_probs=15.8
Q ss_pred ceeceEEEEecCcccchHHHHHHH
Q 032125 65 NGVDMRIRVKGGGHTSQIYAIRQS 88 (147)
Q Consensus 65 ~~~di~v~V~GGG~~gQa~Air~a 88 (147)
..|| |.|-|||++|-+-|+.++
T Consensus 22 ~~~d--V~IVGaG~aGl~~A~~La 43 (407)
T 3rp8_A 22 GHMK--AIVIGAGIGGLSAAVALK 43 (407)
T ss_dssp -CCE--EEEECCSHHHHHHHHHHH
T ss_pred CCCE--EEEECCCHHHHHHHHHHH
Confidence 3455 667799999998876654
No 32
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*
Probab=23.24 E-value=43 Score=26.12 Aligned_cols=20 Identities=25% Similarity=0.194 Sum_probs=16.1
Q ss_pred EEEEecCcccchHHHHHHHH
Q 032125 70 RIRVKGGGHTSQIYAIRQSI 89 (147)
Q Consensus 70 ~v~V~GGG~~gQa~Air~ai 89 (147)
+|.|-|||++|-+-|..++=
T Consensus 2 dVvIIGgGi~Gls~A~~La~ 21 (351)
T 3g3e_A 2 RVVVIGAGVIGLSTALCIHE 21 (351)
T ss_dssp EEEEECCSHHHHHHHHHHHH
T ss_pred cEEEECCCHHHHHHHHHHHH
Confidence 47788999999988876654
No 33
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*
Probab=22.96 E-value=47 Score=26.13 Aligned_cols=21 Identities=19% Similarity=0.126 Sum_probs=16.5
Q ss_pred eEEEEecCcccchHHHHHHHH
Q 032125 69 MRIRVKGGGHTSQIYAIRQSI 89 (147)
Q Consensus 69 i~v~V~GGG~~gQa~Air~ai 89 (147)
.+|.|-|||++|-+-|..++=
T Consensus 22 ~dVvIIG~G~~Gl~~A~~La~ 42 (405)
T 2gag_B 22 YDAIIVGGGGHGLATAYFLAK 42 (405)
T ss_dssp EEEEEECCSHHHHHHHHHHHH
T ss_pred CCEEEECcCHHHHHHHHHHHH
Confidence 446677999999988877664
No 34
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Probab=22.70 E-value=49 Score=25.85 Aligned_cols=21 Identities=14% Similarity=0.188 Sum_probs=16.1
Q ss_pred eEEEEecCcccchHHHHHHHH
Q 032125 69 MRIRVKGGGHTSQIYAIRQSI 89 (147)
Q Consensus 69 i~v~V~GGG~~gQa~Air~ai 89 (147)
.+|.|-|||++|-+-|..++=
T Consensus 4 ~dvvIIGaG~~Gl~~A~~La~ 24 (389)
T 2gf3_A 4 FDVIVVGAGSMGMAAGYQLAK 24 (389)
T ss_dssp EEEEEECCSHHHHHHHHHHHH
T ss_pred CCEEEECCCHHHHHHHHHHHh
Confidence 346778999999988776653
No 35
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*
Probab=22.52 E-value=44 Score=26.16 Aligned_cols=20 Identities=25% Similarity=0.237 Sum_probs=16.0
Q ss_pred eEEEEecCcccchHHHHHHH
Q 032125 69 MRIRVKGGGHTSQIYAIRQS 88 (147)
Q Consensus 69 i~v~V~GGG~~gQa~Air~a 88 (147)
.+|.|-|||++|-+-|..++
T Consensus 7 ~dVvVIG~Gi~Gls~A~~La 26 (363)
T 1c0p_A 7 KRVVVLGSGVIGLSSALILA 26 (363)
T ss_dssp CEEEEECCSHHHHHHHHHHH
T ss_pred CCEEEECCCHHHHHHHHHHH
Confidence 34677899999998887764
No 36
>2i9n_A MHB4A peptide; beta-hairpin, alpha-helix, de novo protein; NMR {Synthetic}
Probab=22.49 E-value=45 Score=18.56 Aligned_cols=16 Identities=44% Similarity=0.706 Sum_probs=9.6
Q ss_pred cCcccchHHHHHHHHH
Q 032125 75 GGGHTSQIYAIRQSIA 90 (147)
Q Consensus 75 GGG~~gQa~Air~aiA 90 (147)
|||..+.|+|-|.|-|
T Consensus 14 gggsaaeayakriaea 29 (33)
T 2i9n_A 14 GGGSAAEAYAKRIAEA 29 (33)
T ss_dssp SCCCSTHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHH
Confidence 5666667776665433
No 37
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*
Probab=22.47 E-value=2.6e+02 Score=21.25 Aligned_cols=33 Identities=12% Similarity=0.126 Sum_probs=22.7
Q ss_pred eeceEEEEe---cCcccchHHHHHHHHHHHHHHhhhh
Q 032125 66 GVDMRIRVK---GGGHTSQIYAIRQSIAKALVAFYQK 99 (147)
Q Consensus 66 ~~di~v~V~---GGG~~gQa~Air~aiAraL~~~~~~ 99 (147)
.++|.+.-+ |.|+.|-+ |...|+++||..+++.
T Consensus 81 g~~i~i~~~IP~g~GLGsSs-a~a~a~l~al~~l~~~ 116 (271)
T 2v8p_A 81 NYSIFIQKNIPPGAGLGGGS-SNLAVVLKKVNELLGS 116 (271)
T ss_dssp CEEEEEECCSCTTSSSCHHH-HHHHHHHHHHHHHTTC
T ss_pred CeEEEEEeCCCCCCCCchHH-HHHHHHHHHHHHhcCC
Confidence 456555543 78877665 6677888898887654
No 38
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=21.52 E-value=48 Score=25.86 Aligned_cols=20 Identities=20% Similarity=0.253 Sum_probs=15.1
Q ss_pred eEEEEecCcccchHHHHHHH
Q 032125 69 MRIRVKGGGHTSQIYAIRQS 88 (147)
Q Consensus 69 i~v~V~GGG~~gQa~Air~a 88 (147)
..|.|-|||++|-+-|+.++
T Consensus 2 m~V~IVGaGpaGl~~A~~L~ 21 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLR 21 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHH
T ss_pred CEEEEECcCHHHHHHHHHHH
Confidence 35778899999988766543
No 39
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Probab=21.34 E-value=48 Score=25.81 Aligned_cols=20 Identities=10% Similarity=0.182 Sum_probs=15.8
Q ss_pred eEEEEecCcccchHHHHHHH
Q 032125 69 MRIRVKGGGHTSQIYAIRQS 88 (147)
Q Consensus 69 i~v~V~GGG~~gQa~Air~a 88 (147)
.+|.|-|||++|-+-|..++
T Consensus 3 ~dvvIIG~Gi~Gl~~A~~La 22 (372)
T 2uzz_A 3 YDLIIIGSGSVGAAAGYYAT 22 (372)
T ss_dssp EEEEESCTTHHHHHHHHHHH
T ss_pred CCEEEECCCHHHHHHHHHHH
Confidence 34677899999998877665
No 40
>2p0g_A Selenoprotein W-related protein; VCR75, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Vibrio cholerae}
Probab=21.21 E-value=73 Score=22.27 Aligned_cols=22 Identities=23% Similarity=0.130 Sum_probs=16.3
Q ss_pred EEEEEEEeCce---eEEEcCeeccc
Q 032125 21 VAVTYCKRGRG---LIKINGCPIEL 42 (147)
Q Consensus 21 ~A~v~l~~G~G---~i~INg~~l~~ 42 (147)
++.|.+.||+| +|.|||..+..
T Consensus 35 l~~v~l~P~~~G~FEV~vng~lV~S 59 (105)
T 2p0g_A 35 IEYVALHPDTGGRFEIFCNGVQIWE 59 (105)
T ss_dssp EEEEEEEEESTTCEEEEETTEEEEE
T ss_pred cceEEEEeCCCceEEEEECCEEEEE
Confidence 45677887654 79999998854
No 41
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6
Probab=20.85 E-value=56 Score=25.13 Aligned_cols=20 Identities=25% Similarity=0.222 Sum_probs=15.8
Q ss_pred eEEEEecCcccchHHHHHHH
Q 032125 69 MRIRVKGGGHTSQIYAIRQS 88 (147)
Q Consensus 69 i~v~V~GGG~~gQa~Air~a 88 (147)
.+|.|-|||.+|-+-|+.++
T Consensus 40 ~dVvIIGgG~aGl~aA~~la 59 (284)
T 1rp0_A 40 TDVVVVGAGSAGLSAAYEIS 59 (284)
T ss_dssp EEEEEECCSHHHHHHHHHHH
T ss_pred cCEEEECccHHHHHHHHHHH
Confidence 34677899999998877665
No 42
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*
Probab=20.64 E-value=50 Score=26.51 Aligned_cols=19 Identities=21% Similarity=0.246 Sum_probs=15.3
Q ss_pred EEEEecCcccchHHHHHHH
Q 032125 70 RIRVKGGGHTSQIYAIRQS 88 (147)
Q Consensus 70 ~v~V~GGG~~gQa~Air~a 88 (147)
+|.|-|||++|-+-|+.++
T Consensus 6 dVvIVGaG~aGl~~A~~L~ 24 (410)
T 3c96_A 6 DILIAGAGIGGLSCALALH 24 (410)
T ss_dssp EEEEECCSHHHHHHHHHHH
T ss_pred eEEEECCCHHHHHHHHHHH
Confidence 4678899999998877654
No 43
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}
Probab=20.28 E-value=57 Score=25.89 Aligned_cols=20 Identities=15% Similarity=0.267 Sum_probs=15.7
Q ss_pred eEEEEecCcccchHHHHHHH
Q 032125 69 MRIRVKGGGHTSQIYAIRQS 88 (147)
Q Consensus 69 i~v~V~GGG~~gQa~Air~a 88 (147)
.+|.|-|||++|-+-|+.++
T Consensus 7 ~dVvIVGaG~aGl~~A~~L~ 26 (399)
T 2x3n_A 7 IDVLINGCGIGGAMLAYLLG 26 (399)
T ss_dssp EEEEEECCSHHHHHHHHHHH
T ss_pred CCEEEECcCHHHHHHHHHHH
Confidence 45778899999988776654
No 44
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=20.11 E-value=52 Score=26.57 Aligned_cols=47 Identities=17% Similarity=0.299 Sum_probs=27.8
Q ss_pred eeceEEEEecCccc-chHHHHHHHHHHHHHHhhhh---------cCChhhHHHHHHHhhh
Q 032125 66 GVDMRIRVKGGGHT-SQIYAIRQSIAKALVAFYQK---------YVDEQSKKEIKDILVR 115 (147)
Q Consensus 66 ~~di~v~V~GGG~~-gQa~Air~aiAraL~~~~~~---------~~~~~~r~~Lk~~l~~ 115 (147)
.+|-.+.-.|..+| ||. =|++|||||+. .|. -.|+.....+...|.+
T Consensus 179 gl~t~~~~~g~~LSGGqr--QRvaiARAL~~-~p~iLlLDEPts~LD~~~~~~i~~~l~~ 235 (306)
T 3nh6_A 179 GYRTQVGERGLKLSGGEK--QRVAIARTILK-APGIILLDEATSALDTSNERAIQASLAK 235 (306)
T ss_dssp GGGCEESTTSBCCCHHHH--HHHHHHHHHHH-CCSEEEEECCSSCCCHHHHHHHHHHHHH
T ss_pred hhhhHhcCCcCCCCHHHH--HHHHHHHHHHh-CCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 34544444455555 344 49999999985 333 2356666666665544
Done!