RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 032125
         (147 letters)



>d2gy9i1 d.14.1.1 (I:4-129) Ribosomal protein S9 {Escherichia coli
           [TaxId: 562]}
          Length = 126

 Score =  115 bits (290), Expect = 7e-35
 Identities = 43/133 (32%), Positives = 59/133 (44%), Gaps = 12/133 (9%)

Query: 15  GRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVK 74
           GR+K++ A  + K G G I IN   +E               L L       +D+ I VK
Sbjct: 6   GRRKSSAARVFIKPGNGKIVINQRSLEQYFGRETARMVVRQPLELV-DMVEKLDLYITVK 64

Query: 75  GGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFG 134
           GGG + Q  AIR  I +AL+ +     DE  + E++          +  D R+ E KK G
Sbjct: 65  GGGISGQAGAIRHGITRALMEY-----DESLRSELRK------AGFVTRDARQVERKKVG 113

Query: 135 GRGARARFQKSYR 147
            R AR R Q S R
Sbjct: 114 LRKARRRPQFSKR 126


>d2vqei1 d.14.1.1 (I:2-128) Ribosomal protein S9 {Thermus
           thermophilus [TaxId: 274]}
          Length = 127

 Score =  110 bits (275), Expect = 1e-32
 Identities = 42/133 (31%), Positives = 58/133 (43%), Gaps = 12/133 (9%)

Query: 15  GRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVK 74
           GR+K AVA  + + G G + +NG         ++R  A    L          D  I V+
Sbjct: 7   GRRKEAVARVFLRPGNGKVTVNGQDFNEYFQGLVRAVAALEPLR-AVDALGRFDAYITVR 65

Query: 75  GGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFG 134
           GGG + QI AI+  IA+ALV +   Y     + ++K          L  D R  E KK+G
Sbjct: 66  GGGKSGQIDAIKLGIARALVQYNPDY-----RAKLKP------LGFLTRDARVVERKKYG 114

Query: 135 GRGARARFQKSYR 147
              AR   Q S R
Sbjct: 115 KHKARRAPQYSKR 127


>d1jfra_ c.69.1.16 (A:) Lipase {Streptomyces exfoliatus [TaxId:
           1905]}
          Length = 260

 Score = 26.9 bits (58), Expect = 0.99
 Identities = 6/35 (17%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 69  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDE 103
             + ++G  H +   +   +IAK  +++ ++++D 
Sbjct: 198 AYLELRGASHFTPNTS-DTTIAKYSISWLKRFIDS 231


>d2c8ma1 d.104.1.3 (A:1-256) Lipoate-protein ligase A
          {Thermoplasma acidophilum [TaxId: 2303]}
          Length = 256

 Score = 25.9 bits (56), Expect = 2.0
 Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 12/48 (25%)

Query: 44 EPEILRFKAFEPILLLGRH------------RFNGVDMRIRVKGGGHT 79
          +  ILRF   +  +++G              + NG+ +  R  GGG  
Sbjct: 32 DKPILRFYRHDRSVIIGYFQVAEEEVDLDYMKKNGIMLARRYTGGGAV 79


>d1vpta_ c.66.1.25 (A:) Polymerase regulatory subunit VP39 {Vaccinia
           virus [TaxId: 10245]}
          Length = 297

 Score = 25.6 bits (56), Expect = 2.4
 Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 7/54 (12%)

Query: 73  VKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPR 126
           + G  H   +  +R       V    ++VDE+  + IK  L      +L++D  
Sbjct: 94  IDGRHHDPILNGLRD------VTLVTRFVDEEYLRSIKKQLHPSKI-ILISDVA 140


>d1g8ma2 c.97.1.4 (A:201-593) AICAR transformylase domain of
           bifunctional purine biosynthesis enzyme ATIC {Chicken
           (Gallus gallus) [TaxId: 9031]}
          Length = 393

 Score = 25.6 bits (55), Expect = 2.7
 Identities = 9/39 (23%), Positives = 16/39 (41%)

Query: 74  KGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDI 112
            G G  S+I+  R +  KA   + + +    S K    +
Sbjct: 245 IGAGQQSRIHCTRLAGDKANSWWLRHHPRVLSMKFKAGV 283


>d1vqza2 d.104.1.3 (A:1-241) LplA-like protein SP1160, N-terminal
          domain {Streptococcus pneumoniae [TaxId: 1313]}
          Length = 241

 Score = 25.1 bits (54), Expect = 3.4
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 12/48 (25%)

Query: 44 EPEILRFKAFEPILLLGRH------------RFNGVDMRIRVKGGGHT 79
          E +I      +P +++GRH            R NG+++  R+ GGG  
Sbjct: 28 EDQIFLLWINKPSIIVGRHQNTIEEINRDYVRENGIEVVRRISGGGAV 75


>d1x9na1 a.235.1.1 (A:262-533) DNA ligase I (LIG1) {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 272

 Score = 25.0 bits (54), Expect = 4.4
 Identities = 5/35 (14%), Positives = 16/35 (45%)

Query: 91  KALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADP 125
            A+   ++K  +  ++  + + L    R+++   P
Sbjct: 29  LAVARTFEKIEEVSARLRMVETLSNLLRSVVALSP 63


>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli
           [TaxId: 562]}
          Length = 253

 Score = 24.3 bits (52), Expect = 6.8
 Identities = 5/33 (15%), Positives = 14/33 (42%)

Query: 23  VTYCKRGRGLIKINGCPIELVEPEILRFKAFEP 55
             Y   G+G+  ++   I + + + +   A+  
Sbjct: 195 GAYILSGQGVYNLDNNWIPVKKGDYIFMGAYSL 227


>d2b7ma1 a.118.17.2 (A:73-623) Exocyst complex component EXO70
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 551

 Score = 24.2 bits (52), Expect = 8.2
 Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 6/33 (18%)

Query: 84  AIRQSIAKALV----AFYQKY--VDEQSKKEIK 110
            ++  I   ++     FY +Y    +  +K IK
Sbjct: 504 TLKSEIISLVMPMYERFYSRYKDSFKNPRKHIK 536


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.140    0.414 

Gapped
Lambda     K      H
   0.267   0.0580    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 546,839
Number of extensions: 24920
Number of successful extensions: 119
Number of sequences better than 10.0: 1
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 18
Length of query: 147
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 70
Effective length of database: 1,350,386
Effective search space: 94527020
Effective search space used: 94527020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.0 bits)