BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032126
(147 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8K0H5|TAF10_MOUSE Transcription initiation factor TFIID subunit 10 OS=Mus musculus
GN=Taf10 PE=1 SV=1
Length = 218
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 71/112 (63%), Gaps = 10/112 (8%)
Query: 21 LTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLNCCLCFCRIRLVAVATQKFVAEVA 80
L +FL L YTPTIPD + +YL ++GF+ D R+ IRL+++A QKF++++A
Sbjct: 116 LVDFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRI--------IRLISLAAQKFISDIA 167
Query: 81 TDALQQCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREYGVNVKHQEYF 132
DALQ CK + A + + KD++ LTMEDL+ AL EYG+NVK YF
Sbjct: 168 NDALQHCKMKGTASGSSR--SKSKDRKYTLTMEDLTPALSEYGINVKKPHYF 217
>sp|Q12962|TAF10_HUMAN Transcription initiation factor TFIID subunit 10 OS=Homo sapiens
GN=TAF10 PE=1 SV=1
Length = 218
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 71/112 (63%), Gaps = 10/112 (8%)
Query: 21 LTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLNCCLCFCRIRLVAVATQKFVAEVA 80
L +FL L YTPTIPD + +YL ++GF+ D R+ IRL+++A QKF++++A
Sbjct: 116 LVDFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRI--------IRLISLAAQKFISDIA 167
Query: 81 TDALQQCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREYGVNVKHQEYF 132
DALQ CK + A + + KD++ LTMEDL+ AL EYG+NVK YF
Sbjct: 168 NDALQHCKMKGTASGSSR--SKSKDRKYTLTMEDLTPALSEYGINVKKPHYF 217
>sp|Q9XZT7|TAFAB_DROME Transcription initiation factor TFIID subunit 10b OS=Drosophila
melanogaster GN=Taf10b PE=1 SV=1
Length = 146
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 66/112 (58%), Gaps = 9/112 (8%)
Query: 21 LTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLNCCLCFCRIRLVAVATQKFVAEVA 80
L++F+S L YTP IPD + HYL GFQ D R+ +RL+++A QK+++++
Sbjct: 41 LSDFMSQLEDYTPLIPDAVTSHYLNMGGFQSDDKRI--------VRLISLAAQKYMSDII 92
Query: 81 TDALQQCKAR-QAAVVKDKRDKQQKDKRLILTMEDLSKALREYGVNVKHQEY 131
DALQ KAR + KD++ LTMEDL AL +YG+NV+ +Y
Sbjct: 93 DDALQHSKARTHMQTTNTPGGSKAKDRKFTLTMEDLQPALADYGINVRKVDY 144
>sp|Q9U5W9|TAF10_DROME Transcription initiation factor TFIID subunit 10 OS=Drosophila
melanogaster GN=Taf10 PE=1 SV=2
Length = 167
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 69/124 (55%), Gaps = 18/124 (14%)
Query: 17 DDAALTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLNCCLCFCRIRLVAVATQKFV 76
+++ + E + L Y+PTIPD L H L +GF C + +RLV+V+ QKF+
Sbjct: 53 EESEMDELIKQLEDYSPTIPDALTMHILKTAGF--------CTVDPKIVRLVSVSAQKFI 104
Query: 77 AEVATDALQQCKARQAAV--------VKDKRDKQQKDKRLILTMEDLSKALREYGVNVKH 128
+++A DALQ CK R + KDK K KD++ L MEDL AL ++G+ ++
Sbjct: 105 SDIANDALQHCKTRTTNIQHSSGHSSSKDK--KNPKDRKYTLAMEDLVPALADHGITMRK 162
Query: 129 QEYF 132
+YF
Sbjct: 163 PQYF 166
>sp|O60171|TAF10_SCHPO Transcription initiation factor TFIID subunit 10
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=taf10 PE=3 SV=1
Length = 215
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 68/133 (51%), Gaps = 26/133 (19%)
Query: 18 DAALTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLNCCLCFCRIRLVAVATQKFVA 77
D L FL+ + Y+P IPD L+++YL+ SGF+C D RL +L+ + QKF++
Sbjct: 90 DKTLENFLAQMDDYSPLIPDVLLDYYLSLSGFKCVDPRLK--------KLLGLTAQKFIS 141
Query: 78 EVATDALQQCKARQAA------------------VVKDKRDKQQKDKRLILTMEDLSKAL 119
+VA DA Q K R + ++ + +LT++DLS AL
Sbjct: 142 DVAQDAYQYSKIRTGSSNASSTTFGAQNFGAGGASGIGSSGRRGDRGKTVLTVDDLSAAL 201
Query: 120 REYGVNVKHQEYF 132
EYG+N+K ++F
Sbjct: 202 NEYGINLKRPDFF 214
>sp|Q12030|TAF10_YEAST Transcription initiation factor TFIID subunit 10 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TAF10 PE=1
SV=1
Length = 206
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 36/143 (25%)
Query: 18 DAALTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLNCCLCFCRIRLVAVATQKFVA 77
D L E L + P IPD ++++YL K+GF DVR+ RL+A+ATQKFV+
Sbjct: 71 DKTLEEILEMMDSTPPIIPDAVIDYYLTKNGFNVADVRVK--------RLLALATQKFVS 122
Query: 78 EVATDALQQCKARQAAVVKDKRDKQQKDK----------------------------RLI 109
++A DA + + R + V + + Q + + +++
Sbjct: 123 DIAKDAYEYSRIRSSVAVSNANNSQARARQLLQGQQQPGVQQISQQQHQQNEKTTASKVV 182
Query: 110 LTMEDLSKALREYGVNVKHQEYF 132
LT+ DLS A+ EYG+N+ +++
Sbjct: 183 LTVNDLSSAVAEYGLNIGRPDFY 205
>sp|C3K2F6|TRMA_PSEFS tRNA (uracil(54)-C(5))-methyltransferase OS=Pseudomonas fluorescens
(strain SBW25) GN=trmA PE=3 SV=1
Length = 359
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 47/118 (39%), Gaps = 32/118 (27%)
Query: 36 PDELVEHYLAKSGFQCPDVRLNCCLCFCRIR-LVAVATQKFVAEVATDALQQCKARQAAV 94
PD+L+E Y F P R+R ++A K A L + +
Sbjct: 204 PDDLLELYCGNGNFTLP--------LATRVRKVLATEISKTSVNAALSNLDENAVGNVTL 255
Query: 95 VKDKRDKQQKDKRLILTMEDLSKALRE-------YGVNVKHQEY---FADNPSTGMDP 142
V+ L+ E+L++AL E +G+++K E+ F D P GMDP
Sbjct: 256 VR-------------LSAEELTEALNEVRPFRRLHGIDLKRYEFSSVFVDPPRAGMDP 300
>sp|Q59009|Y1614_METJA Uncharacterized protein MJ1614 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1614 PE=4 SV=2
Length = 251
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 37/89 (41%)
Query: 38 ELVEHYLAKSGFQCPDVRLNCCLCFCRIRLVAVATQKFVAEVATDALQQCKARQAAVVKD 97
EL + Y K CP LN RIR V++ + V EVA +
Sbjct: 48 ELAQSYDLKYTLHCPITDLNLSSYRERIRKVSLDFVRDVLEVAIKVDAKLIVLHPGYCVF 107
Query: 98 KRDKQQKDKRLILTMEDLSKALREYGVNV 126
K D ++ LI ++ DL+ E+GV +
Sbjct: 108 KYDYEKALNSLIKSLNDLNNIQEEFGVQI 136
>sp|A3PBD8|LEPA_PROM0 Elongation factor 4 OS=Prochlorococcus marinus (strain MIT 9301)
GN=lepA PE=3 SV=1
Length = 602
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 122 YGVNVKHQEY-FADNPSTGMDPASKE 146
Y VN+ HQE+ F DNPST DP +E
Sbjct: 377 YKVNLNHQEHIFIDNPSTIPDPQLRE 402
>sp|P30154|2AAB_HUMAN Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A
beta isoform OS=Homo sapiens GN=PPP2R1B PE=1 SV=3
Length = 601
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Query: 19 AALTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLN------CCLCFCRIRLVAVAT 72
A++ LS+++G TI + L+ +LA+ +CPDVRLN C IR ++ +
Sbjct: 358 ASVIMGLSTILGKENTI-EHLLPLFLAQLKDECPDVRLNIISNLDCVNEVIGIRQLSQSL 416
Query: 73 QKFVAEVATDALQQCKARQAAV 94
+ E+A DA + + R A +
Sbjct: 417 LPAIVELAEDA--KWRVRLAII 436
>sp|Q32PI5|2AAA_BOVIN Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A
alpha isoform OS=Bos taurus GN=PPP2R1A PE=1 SV=1
Length = 589
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 13/80 (16%)
Query: 26 SSLMGYTPTI-PDELVEH----YLAKSGFQCPDVRLN------CCLCFCRIRLVAVATQK 74
S +MG +P + D +EH +LA+ +CP+VRLN C IR ++ +
Sbjct: 347 SVIMGLSPILGKDSTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLP 406
Query: 75 FVAEVATDALQQCKARQAAV 94
+ E+A DA + + R A +
Sbjct: 407 AIVELAEDA--KWRVRLAII 424
>sp|P30153|2AAA_HUMAN Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A
alpha isoform OS=Homo sapiens GN=PPP2R1A PE=1 SV=4
Length = 589
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 13/80 (16%)
Query: 26 SSLMGYTPTI-PDELVEH----YLAKSGFQCPDVRLN------CCLCFCRIRLVAVATQK 74
S +MG +P + D +EH +LA+ +CP+VRLN C IR ++ +
Sbjct: 347 SVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLP 406
Query: 75 FVAEVATDALQQCKARQAAV 94
+ E+A DA + + R A +
Sbjct: 407 AIVELAEDA--KWRVRLAII 424
>sp|P54612|2AAA_PIG Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A
alpha isoform OS=Sus scrofa GN=PPP2R1A PE=2 SV=2
Length = 589
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 13/80 (16%)
Query: 26 SSLMGYTPTI-PDELVEH----YLAKSGFQCPDVRLN------CCLCFCRIRLVAVATQK 74
S +MG +P + D +EH +LA+ +CP+VRLN C IR ++ +
Sbjct: 347 SVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLP 406
Query: 75 FVAEVATDALQQCKARQAAV 94
+ E+A DA + + R A +
Sbjct: 407 AIVELAEDA--KWRVRLAII 424
>sp|Q76MZ3|2AAA_MOUSE Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A
alpha isoform OS=Mus musculus GN=Ppp2r1a PE=1 SV=3
Length = 589
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 13/80 (16%)
Query: 26 SSLMGYTPTI-PDELVEH----YLAKSGFQCPDVRLN------CCLCFCRIRLVAVATQK 74
S +MG +P + D +EH +LA+ +CP+VRLN C IR ++ +
Sbjct: 347 SVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLP 406
Query: 75 FVAEVATDALQQCKARQAAV 94
+ E+A DA + + R A +
Sbjct: 407 AIVELAEDA--KWRVRLAII 424
>sp|Q5QMG3|NFYB2_ORYSJ Nuclear transcription factor Y subunit B-2 OS=Oryza sativa subsp.
japonica GN=NFYB2 PE=2 SV=1
Length = 178
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 62 FCRIRLVAVATQKFVAEVATDALQQCKARQAA-VVKDKRDKQQKDKRLILTMEDLSKALR 120
RI AV +A+ A + LQ+C + + V + DK QK+KR + EDL A+
Sbjct: 44 ISRIMKKAVPANGKIAKDAKETLQECVSEFISFVTSEASDKCQKEKRKTINGEDLLFAMG 103
Query: 121 EYG 123
G
Sbjct: 104 TLG 106
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.131 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,453,180
Number of Sequences: 539616
Number of extensions: 1750728
Number of successful extensions: 6609
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 6586
Number of HSP's gapped (non-prelim): 29
length of query: 147
length of database: 191,569,459
effective HSP length: 106
effective length of query: 41
effective length of database: 134,370,163
effective search space: 5509176683
effective search space used: 5509176683
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)