Query 032126
Match_columns 147
No_of_seqs 104 out of 142
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 16:02:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032126.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032126hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ku5_A HPHA, archaeal histon; 97.3 0.00087 3E-08 44.8 6.9 67 31-120 3-69 (70)
2 2yfw_B Histone H4, H4; cell cy 97.3 0.001 3.5E-08 47.9 7.8 71 30-123 25-95 (103)
3 1id3_B Histone H4; nucleosome 97.2 0.0011 3.9E-08 47.9 7.4 73 28-123 22-94 (102)
4 1tzy_D Histone H4-VI; histone- 97.2 0.0015 5.2E-08 46.9 7.6 73 28-123 23-95 (103)
5 2hue_C Histone H4; mini beta s 97.1 0.0017 5.9E-08 45.1 6.6 74 28-124 4-77 (84)
6 1n1j_A NF-YB; histone-like PAI 96.8 0.0064 2.2E-07 42.5 8.1 73 32-125 6-78 (93)
7 3b0c_T CENP-T, centromere prot 96.6 0.0045 1.5E-07 45.4 5.9 70 33-125 6-75 (111)
8 1b67_A Protein (histone HMFA); 96.5 0.011 3.9E-07 38.8 6.9 65 34-121 2-66 (68)
9 1taf_B TFIID TBP associated fa 96.3 0.014 4.9E-07 40.0 7.0 67 31-120 3-69 (70)
10 1taf_A TFIID TBP associated fa 96.0 0.033 1.1E-06 38.0 7.2 61 38-121 5-65 (68)
11 4g92_C HAPE; transcription fac 95.9 0.021 7.3E-07 42.0 6.7 97 1-121 1-106 (119)
12 3b0c_W CENP-W, centromere prot 95.5 0.064 2.2E-06 36.3 7.2 67 33-122 3-70 (76)
13 1f1e_A Histone fold protein; a 95.0 0.092 3.2E-06 40.7 7.7 70 33-125 3-73 (154)
14 1n1j_B NF-YC; histone-like PAI 94.7 0.065 2.2E-06 37.9 5.6 69 32-122 17-85 (97)
15 1h3o_B Transcription initiatio 94.7 0.22 7.5E-06 34.6 8.1 69 17-126 7-76 (76)
16 2byk_B Chrac-14; nucleosome sl 94.4 0.064 2.2E-06 40.1 5.2 71 33-124 8-78 (128)
17 1jfi_B DR1 protein, transcript 93.5 0.26 8.7E-06 39.2 7.4 70 34-125 15-84 (179)
18 2byk_A Chrac-16; nucleosome sl 92.4 0.21 7.1E-06 37.9 5.2 70 31-121 16-85 (140)
19 1jfi_A Transcription regulator 90.7 0.35 1.2E-05 34.3 4.6 67 30-121 7-76 (98)
20 1f1e_A Histone fold protein; a 90.0 1 3.6E-05 34.7 7.1 66 34-122 82-147 (154)
21 3b0b_C CENP-X, centromere prot 88.5 3 0.0001 29.0 8.0 72 29-120 3-74 (81)
22 2ly8_A Budding yeast chaperone 88.1 1.5 5.3E-05 32.8 6.6 47 65-126 70-116 (121)
23 4dra_E Centromere protein X; D 85.7 6.9 0.00024 27.5 8.6 70 31-120 9-78 (84)
24 3v9r_B MHF2, uncharacterized p 83.7 2.7 9.3E-05 30.2 5.8 72 34-118 1-72 (88)
25 1h3o_A Transcription initiatio 71.9 4 0.00014 28.3 3.6 44 41-92 13-56 (75)
26 3kw6_A 26S protease regulatory 71.6 9.2 0.00032 24.5 5.2 59 38-121 10-72 (78)
27 2dae_A KIAA0733 protein; mitog 65.8 2.9 9.9E-05 29.4 1.8 23 28-50 17-39 (75)
28 3b0b_B CENP-S, centromere prot 64.2 7.9 0.00027 28.2 4.0 42 65-121 45-86 (107)
29 2l5a_A Histone H3-like centrom 55.5 12 0.0004 30.9 4.1 59 42-123 169-227 (235)
30 4b4t_K 26S protease regulatory 51.3 39 0.0013 29.1 6.9 26 107-132 399-427 (428)
31 3v9r_A MHF1, uncharacterized p 49.5 31 0.0011 24.3 5.0 53 44-120 26-78 (90)
32 4dra_A Centromere protein S; D 47.2 11 0.00038 27.9 2.4 41 65-120 53-93 (113)
33 2ahq_A Sigma-54, RNA polymeras 44.6 7.3 0.00025 26.7 1.0 25 104-128 32-56 (76)
34 3r45_A Histone H3-like centrom 42.3 48 0.0016 25.8 5.4 74 32-124 75-151 (156)
35 3vlf_B 26S protease regulatory 40.3 77 0.0026 20.8 5.7 63 39-126 9-75 (88)
36 2p5k_A Arginine repressor; DNA 38.4 5.6 0.00019 24.0 -0.3 25 109-133 19-43 (64)
37 3c6f_A YETF protein; uncharact 38.0 11 0.00038 28.5 1.2 20 106-125 31-50 (153)
38 3vh5_A CENP-S; histone fold, c 37.3 46 0.0016 25.4 4.6 40 66-120 46-85 (140)
39 4art_A Structural protein ORF2 35.3 13 0.00045 30.6 1.3 33 18-51 96-128 (279)
40 1b4a_A Arginine repressor; hel 34.6 20 0.00067 27.0 2.1 21 108-128 18-38 (149)
41 2dzn_B 26S protease regulatory 33.7 70 0.0024 20.6 4.5 15 108-122 54-68 (82)
42 2hue_B Histone H3; mini beta s 32.6 89 0.003 21.3 5.0 40 70-124 36-75 (77)
43 2krk_A 26S protease regulatory 32.4 71 0.0024 21.2 4.5 16 107-122 66-81 (86)
44 3nqu_A Histone H3-like centrom 31.9 94 0.0032 23.6 5.5 73 33-124 60-135 (140)
45 3uk6_A RUVB-like 2; hexameric 30.4 1.3E+02 0.0046 23.2 6.4 15 107-121 315-329 (368)
46 1h1j_S THO1 protein; SAP domai 29.1 33 0.0011 21.8 2.2 18 109-126 7-24 (51)
47 3nqj_A Histone H3-like centrom 28.6 94 0.0032 21.5 4.6 42 68-124 36-77 (82)
48 3rdw_A Putative arsenate reduc 28.0 31 0.0011 24.3 2.1 25 109-133 79-103 (121)
49 2rrh_A VIP peptides; peptide h 27.7 36 0.0012 19.5 1.9 15 67-81 14-28 (29)
50 2qz4_A Paraplegin; AAA+, SPG7, 27.1 29 0.00098 25.5 1.8 17 106-122 233-249 (262)
51 3f0i_A Arsenate reductase; str 26.9 33 0.0011 24.1 2.1 25 109-133 78-102 (119)
52 3oxn_A Putative transcriptiona 26.5 69 0.0024 22.4 3.7 66 19-85 151-221 (241)
53 1uw4_B UPF2, regulator of nons 26.3 21 0.0007 29.2 1.0 54 18-80 57-112 (248)
54 3l78_A Regulatory protein SPX; 25.9 35 0.0012 23.8 2.1 26 109-134 73-98 (120)
55 3fz4_A Putative arsenate reduc 25.7 35 0.0012 24.0 2.1 35 109-143 78-114 (120)
56 1rw1_A Conserved hypothetical 25.6 36 0.0012 23.3 2.1 26 109-134 72-97 (114)
57 2do1_A Nuclear protein HCC-1; 25.5 39 0.0014 21.8 2.1 18 109-126 12-29 (55)
58 1o6b_A Phosphopantetheine aden 24.8 60 0.0021 23.2 3.2 38 15-52 126-163 (169)
59 3aji_B S6C, proteasome (prosom 24.8 68 0.0023 20.5 3.2 17 107-123 56-72 (83)
60 1zrj_A E1B-55KDA-associated pr 24.1 44 0.0015 21.1 2.1 19 108-126 11-29 (50)
61 2qp9_X Vacuolar protein sortin 23.7 1.6E+02 0.0056 23.6 5.9 17 107-123 316-332 (355)
62 2kok_A Arsenate reductase; bru 23.6 42 0.0014 23.2 2.1 25 109-133 77-101 (120)
63 2ekf_A Ancient ubiquitous prot 23.4 65 0.0022 21.4 2.9 33 16-48 8-40 (61)
64 3m1d_A Baculoviral IAP repeat- 22.1 31 0.0011 23.6 1.1 37 25-63 16-54 (85)
65 3byi_A RHO GTPase activating p 22.0 67 0.0023 24.2 3.1 37 18-56 93-129 (214)
66 2g49_C Glucagon preproprotein; 21.9 52 0.0018 19.0 1.9 16 66-81 13-28 (29)
67 1s3c_A Arsenate reductase; ARS 21.9 46 0.0016 24.1 2.1 26 109-134 75-100 (141)
68 2ko1_A CTR148A, GTP pyrophosph 21.4 33 0.0011 21.4 1.1 16 112-127 19-34 (88)
69 3gkx_A Putative ARSC family re 21.3 34 0.0012 24.1 1.2 27 108-134 78-104 (120)
70 3lap_A Arginine repressor; arg 21.2 45 0.0015 25.7 2.0 21 107-127 32-52 (170)
71 2dhy_A CUE domain-containing p 21.0 54 0.0018 21.8 2.1 39 17-56 14-52 (67)
72 2k6x_A Sigma-A, RNA polymerase 20.9 1E+02 0.0035 19.9 3.5 16 111-126 44-59 (72)
73 2ejs_A Autocrine motility fact 20.6 78 0.0027 20.7 2.8 33 16-48 8-40 (58)
74 3evi_A Phosducin-like protein 20.5 44 0.0015 23.1 1.6 16 109-124 99-114 (118)
No 1
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=97.31 E-value=0.00087 Score=44.75 Aligned_cols=67 Identities=18% Similarity=0.318 Sum_probs=53.6
Q ss_pred CCCCCcHHHHHHHHHhCCCCCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhchhcccccccceee
Q 032126 31 YTPTIPDELVEHYLAKSGFQCPDVRLNCCLCFCRIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRLIL 110 (147)
Q Consensus 31 Y~P~IPD~Vt~yyL~~aGf~~~D~Rv~~~~~~~~~RLvSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~r~vL 110 (147)
|-|.||-..+.-.+++.|..-=.+.+ +-.+.=++..|+.+|+.||..|++ ..+|-++
T Consensus 3 ~~~~lp~a~v~Rl~r~~g~~ris~~a--------~~~l~e~~~~~~~~v~~dA~~~a~---------------hakRkTI 59 (70)
T 1ku5_A 3 MMGELPIAPVDRLIRKAGAERVSEQA--------AKVLAEYLEEYAIEIAKKAVEFAR---------------HAGRKTV 59 (70)
T ss_dssp --CCSCHHHHHHHHHHTTCSEECHHH--------HHHHHHHHHHHHHHHHHHHHHHHH---------------TTTCSEE
T ss_pred ccccCChHHHHHHHHHcCcceeCHHH--------HHHHHHHHHHHHHHHHHHHHHHHH---------------HcCCCcC
Confidence 57899999999999999865445556 667777899999999999999984 2235589
Q ss_pred eHHHHHHHHH
Q 032126 111 TMEDLSKALR 120 (147)
Q Consensus 111 TmEDLs~AL~ 120 (147)
+.+|+..|++
T Consensus 60 ~~~DV~lA~~ 69 (70)
T 1ku5_A 60 KVEDIKLAIK 69 (70)
T ss_dssp CHHHHHHHHT
T ss_pred CHHHHHHHHH
Confidence 9999999875
No 2
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=97.31 E-value=0.001 Score=47.93 Aligned_cols=71 Identities=20% Similarity=0.215 Sum_probs=54.7
Q ss_pred CCCCCCcHHHHHHHHHhCCCCCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhchhccccccccee
Q 032126 30 GYTPTIPDELVEHYLAKSGFQCPDVRLNCCLCFCRIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRLI 109 (147)
Q Consensus 30 dY~P~IPD~Vt~yyL~~aGf~~~D~Rv~~~~~~~~~RLvSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~r~v 109 (147)
+-..-||-+-+.-++++.|+..=-.-+ ..-++=+...|+.+|+.||..|++- .+|.+
T Consensus 25 ~~~~gip~~~I~Rlar~~G~~rIs~~a--------~~~l~~vle~~~~~V~~dA~~~a~h---------------akRkt 81 (103)
T 2yfw_B 25 DNIQGITKPAIRRLARRGGVKRISGLI--------YEEVRNVLKTFLESVIRDAVTYTEH---------------AKRKT 81 (103)
T ss_dssp -----CCHHHHHHHHHHTTCCEECTTH--------HHHHHHHHHHHHHHHHHHHHHHHHH---------------TTCSE
T ss_pred hhhccCCHHHHHHHHHHcCccccCHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH---------------cCCCc
Confidence 444449999999999999996322335 6677778899999999999999852 23458
Q ss_pred eeHHHHHHHHHHhC
Q 032126 110 LTMEDLSKALREYG 123 (147)
Q Consensus 110 LTmEDLs~AL~EyG 123 (147)
+|.+|+..||+..|
T Consensus 82 vt~~DV~~Alr~~g 95 (103)
T 2yfw_B 82 VTSLDVVYALKRQG 95 (103)
T ss_dssp ECHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHcC
Confidence 99999999999886
No 3
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=97.24 E-value=0.0011 Score=47.91 Aligned_cols=73 Identities=19% Similarity=0.225 Sum_probs=59.1
Q ss_pred cCCCCCCCcHHHHHHHHHhCCCCCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhchhcccccccc
Q 032126 28 LMGYTPTIPDELVEHYLAKSGFQCPDVRLNCCLCFCRIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKR 107 (147)
Q Consensus 28 LddY~P~IPD~Vt~yyL~~aGf~~~D~Rv~~~~~~~~~RLvSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~r 107 (147)
|.|...-||-+-+.-++++.|..-=-.-+ +.-+.=+...|+.+|+.||..|++- .+|
T Consensus 22 ~r~~i~~ip~~~I~Rlar~~Gv~rIS~da--------~~~l~~~le~fi~~I~~dA~~~a~H---------------akR 78 (102)
T 1id3_B 22 LRDNIQGITKPAIRRLARRGGVKRISGLI--------YEEVRAVLKSFLESVIRDSVTYTEH---------------AKR 78 (102)
T ss_dssp --CCGGGSCHHHHHHHHHHTTCCEECTTH--------HHHHHHHHHHHHHHHHHHHHHHHHH---------------TTC
T ss_pred HHhccCCCCHHHHHHHHHHcCchhccHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH---------------cCC
Confidence 45666679999999999999996433346 7788889999999999999999852 234
Q ss_pred eeeeHHHHHHHHHHhC
Q 032126 108 LILTMEDLSKALREYG 123 (147)
Q Consensus 108 ~vLTmEDLs~AL~EyG 123 (147)
-++|.+|+..||+..|
T Consensus 79 KTVt~~DV~~ALkr~g 94 (102)
T 1id3_B 79 KTVTSLDVVYALKRQG 94 (102)
T ss_dssp SEECHHHHHHHHHHTT
T ss_pred CcCcHHHHHHHHHHcC
Confidence 5899999999999886
No 4
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=97.19 E-value=0.0015 Score=46.95 Aligned_cols=73 Identities=19% Similarity=0.201 Sum_probs=57.1
Q ss_pred cCCCCCCCcHHHHHHHHHhCCCCCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhchhcccccccc
Q 032126 28 LMGYTPTIPDELVEHYLAKSGFQCPDVRLNCCLCFCRIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKR 107 (147)
Q Consensus 28 LddY~P~IPD~Vt~yyL~~aGf~~~D~Rv~~~~~~~~~RLvSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~r 107 (147)
+.+-..-||-+-+.-++.+.|+..--.-+ ..-++=+...|+.+|+.||..|++- .+|
T Consensus 23 ~r~~~~gip~~~I~Rlar~~G~~rIs~~a--------~~~l~~vle~~~~~V~~dA~~~a~h---------------akR 79 (103)
T 1tzy_D 23 LRDNIQGITKPAIRRLARRGGVKRISGLI--------YEETRGVLKVFLENVIRDAVTYTEH---------------AKR 79 (103)
T ss_dssp CCCGGGGSCHHHHHHHHHHTTCCEECTTH--------HHHHHHHHHHHHHHHHHHHHHHHHH---------------TTC
T ss_pred hhhhcccCCHHHHHHHHHHcCccccCHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH---------------cCC
Confidence 33444449999999999999996322235 5667777899999999999999852 235
Q ss_pred eeeeHHHHHHHHHHhC
Q 032126 108 LILTMEDLSKALREYG 123 (147)
Q Consensus 108 ~vLTmEDLs~AL~EyG 123 (147)
.++|.+|+..||+..|
T Consensus 80 ktIt~~DV~~Alr~~g 95 (103)
T 1tzy_D 80 KTVTAMDVVYALKRQG 95 (103)
T ss_dssp SEECHHHHHHHHHHTT
T ss_pred CcCCHHHHHHHHHHcC
Confidence 5899999999999886
No 5
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=97.05 E-value=0.0017 Score=45.11 Aligned_cols=74 Identities=19% Similarity=0.190 Sum_probs=59.2
Q ss_pred cCCCCCCCcHHHHHHHHHhCCCCCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhchhcccccccc
Q 032126 28 LMGYTPTIPDELVEHYLAKSGFQCPDVRLNCCLCFCRIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKR 107 (147)
Q Consensus 28 LddY~P~IPD~Vt~yyL~~aGf~~~D~Rv~~~~~~~~~RLvSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~r 107 (147)
|.|...-||-+-+.-++++.|..-=-.-+ +.-+.=....|+.+|+.||..|++- .+|
T Consensus 4 ~r~~~~~ip~~~I~Riar~~Gv~rIs~da--------~~~l~~~l~~~~~~I~~dA~~~a~h---------------a~R 60 (84)
T 2hue_C 4 LRDNIQGITKPAIRRLARRGGVKRISGLI--------YEETRGVLKVFLENVIRDAVTYTEH---------------AKR 60 (84)
T ss_dssp GGGGCCSSCHHHHHHHHHHTTCCEECTTH--------HHHHHHHHHHHHHHHHHHHHHHHHH---------------TTC
T ss_pred ccccCCCCCHHHHHHHHHHcCchhccHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH---------------cCC
Confidence 44566779999999999999996322336 6778888999999999999999852 224
Q ss_pred eeeeHHHHHHHHHHhCc
Q 032126 108 LILTMEDLSKALREYGV 124 (147)
Q Consensus 108 ~vLTmEDLs~AL~EyGI 124 (147)
-++|.+|+..||+..|.
T Consensus 61 KTvt~~DV~~Alk~~g~ 77 (84)
T 2hue_C 61 KTVTAMDVVYALKRQGR 77 (84)
T ss_dssp SEECHHHHHHHTTTTCE
T ss_pred CcCcHHHHHHHHHHcCC
Confidence 48999999999998763
No 6
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=96.85 E-value=0.0064 Score=42.48 Aligned_cols=73 Identities=18% Similarity=0.258 Sum_probs=56.5
Q ss_pred CCCCcHHHHHHHHHhCCCCCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhchhcccccccceeee
Q 032126 32 TPTIPDELVEHYLAKSGFQCPDVRLNCCLCFCRIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRLILT 111 (147)
Q Consensus 32 ~P~IPD~Vt~yyL~~aGf~~~D~Rv~~~~~~~~~RLvSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~r~vLT 111 (147)
-..||-+-+.-+++.+|=+ +.|| ..-=.-+++=|+.-||..|+.+|..+|+ .++|-|++
T Consensus 6 d~~LP~a~i~ri~K~~~~~--~~~i----s~dA~~~l~~a~e~Fi~~l~~~A~~~a~---------------~~kRkTI~ 64 (93)
T 1n1j_A 6 DIYLPIANVARIMKNAIPQ--TGKI----AKDAKECVQECVSEFISFITSEASERCH---------------QEKRKTIN 64 (93)
T ss_dssp -CCCCHHHHHHHHHHTSCT--TCEE----CHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HTTCSSBC
T ss_pred cccCChhHHHHHHHHhCCc--ccee----CHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HcCCCccC
Confidence 3579999999999999742 3455 1122358888999999999999999984 23355899
Q ss_pred HHHHHHHHHHhCcc
Q 032126 112 MEDLSKALREYGVN 125 (147)
Q Consensus 112 mEDLs~AL~EyGIn 125 (147)
-+|+..||++.|..
T Consensus 65 ~~Dv~~Al~~l~F~ 78 (93)
T 1n1j_A 65 GEDILFAMSTLGFD 78 (93)
T ss_dssp HHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHcCcH
Confidence 99999999988864
No 7
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=96.58 E-value=0.0045 Score=45.35 Aligned_cols=70 Identities=14% Similarity=0.264 Sum_probs=52.8
Q ss_pred CCCcHHHHHHHHHhCCCCCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhchhcccccccceeeeH
Q 032126 33 PTIPDELVEHYLAKSGFQCPDVRLNCCLCFCRIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRLILTM 112 (147)
Q Consensus 33 P~IPD~Vt~yyL~~aGf~~~D~Rv~~~~~~~~~RLvSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~r~vLTm 112 (147)
|-||-+++.-++.+.|-.---..+ +-.+.=++..|+.+|+.||..||+- .+|-|+|.
T Consensus 6 ~~lP~a~I~Ri~r~~g~~rIS~~a--------~~~l~e~l~~f~~~v~~da~~~A~H---------------A~RKTV~~ 62 (111)
T 3b0c_T 6 PEIASSLIKQIFSHYVKTPVTRDA--------YKIVEKCSERYFKQISSDLEAYSQH---------------AGRKTVEM 62 (111)
T ss_dssp ----CHHHHHHHHHHHCSCBCHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH---------------TTCSEECH
T ss_pred CCCCHHHHHHHHHHCCCCccCHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH---------------cCCCcCCH
Confidence 679999999999999765434445 6677778889999999999999852 12348999
Q ss_pred HHHHHHHHHhCcc
Q 032126 113 EDLSKALREYGVN 125 (147)
Q Consensus 113 EDLs~AL~EyGIn 125 (147)
||+..||+..|-.
T Consensus 63 eDV~lalrr~g~~ 75 (111)
T 3b0c_T 63 ADVELLMRRQGLV 75 (111)
T ss_dssp HHHHHHHHHTTSS
T ss_pred HHHHHHHHHCCCc
Confidence 9999999998854
No 8
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=96.48 E-value=0.011 Score=38.78 Aligned_cols=65 Identities=17% Similarity=0.188 Sum_probs=50.6
Q ss_pred CCcHHHHHHHHHhCCCCCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhchhcccccccceeeeHH
Q 032126 34 TIPDELVEHYLAKSGFQCPDVRLNCCLCFCRIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRLILTME 113 (147)
Q Consensus 34 ~IPD~Vt~yyL~~aGf~~~D~Rv~~~~~~~~~RLvSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~r~vLTmE 113 (147)
.||-.-+.-.+++. ++.|| ..-=.-+++=|+.-||..|+.||..+|+ ..+|.|++-+
T Consensus 2 ~lP~a~v~Ri~k~~----~~~ri----s~~A~~~l~~a~e~fi~~l~~~A~~~a~---------------~~kRkTI~~~ 58 (68)
T 1b67_A 2 ELPIAPIGRIIKNA----GAERV----SDDARIALAKVLEEMGEEIASEAVKLAK---------------HAGRKTIKAE 58 (68)
T ss_dssp CSCHHHHHHHHHHT----TCSEE----CHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HTTCSEECHH
T ss_pred CCCccHHHHHHhcC----CcccC----CHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HcCCCccCHH
Confidence 47888899999988 46666 2222346777899999999999999984 3346799999
Q ss_pred HHHHHHHH
Q 032126 114 DLSKALRE 121 (147)
Q Consensus 114 DLs~AL~E 121 (147)
|+..|+++
T Consensus 59 Di~~A~~~ 66 (68)
T 1b67_A 59 DIELARKM 66 (68)
T ss_dssp HHHHHGGG
T ss_pred HHHHHHHh
Confidence 99999875
No 9
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=96.34 E-value=0.014 Score=40.03 Aligned_cols=67 Identities=18% Similarity=0.209 Sum_probs=56.9
Q ss_pred CCCCCcHHHHHHHHHhCCCCCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhchhcccccccceee
Q 032126 31 YTPTIPDELVEHYLAKSGFQCPDVRLNCCLCFCRIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRLIL 110 (147)
Q Consensus 31 Y~P~IPD~Vt~yyL~~aGf~~~D~Rv~~~~~~~~~RLvSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~r~vL 110 (147)
|-..+|-+-+.-+.+..|++.-..-+ .+.++=-..--+.+|+++|..+.+. -+|.+|
T Consensus 3 ~~s~lp~~~v~~iaes~Gi~~lsdda--------a~~LA~dvEyr~~eI~qeA~kfmrH---------------akRk~L 59 (70)
T 1taf_B 3 YGSSISAESMKVIAESIGVGSLSDDA--------AKELAEDVSIKLKRIVQDAAKFMNH---------------AKRQKL 59 (70)
T ss_dssp CSCCCCHHHHHHHHHHTTCCCBCHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH---------------TTCSSB
T ss_pred ccccCCHHHHHHHHHHCCCCCCCHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH---------------cCCCee
Confidence 55789999999999999998766667 7889999999999999999999642 124589
Q ss_pred eHHHHHHHHH
Q 032126 111 TMEDLSKALR 120 (147)
Q Consensus 111 TmEDLs~AL~ 120 (147)
|.+|+..||+
T Consensus 60 t~~DI~~Alk 69 (70)
T 1taf_B 60 SVRDIDMSLK 69 (70)
T ss_dssp CHHHHHHHHC
T ss_pred cHHHHHHHHc
Confidence 9999999984
No 10
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=95.96 E-value=0.033 Score=37.96 Aligned_cols=61 Identities=15% Similarity=0.217 Sum_probs=52.6
Q ss_pred HHHHHHHHhCCCCCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhchhcccccccceeeeHHHHHH
Q 032126 38 ELVEHYLAKSGFQCPDVRLNCCLCFCRIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRLILTMEDLSK 117 (147)
Q Consensus 38 ~Vt~yyL~~aGf~~~D~Rv~~~~~~~~~RLvSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~r~vLTmEDLs~ 117 (147)
.++.-+|+..|.+--++++ +-.+.=.+.+++++|+.||..|++-. +|-+++.||+..
T Consensus 5 ~~i~~iLk~~G~~~~~~~v--------~~~L~e~~~ry~~~il~dA~~~a~HA---------------grktv~~eDVkL 61 (68)
T 1taf_A 5 QVIMSILKELNVQEYEPRV--------VNQLLEFTFRYVTSILDDAKVYANHA---------------RKKTIDLDDVRL 61 (68)
T ss_dssp HHHHHHHHHTTCCCBCTHH--------HHHHHHHHHHHHHHHHHHHHHHHHHT---------------TCSSBCHHHHHH
T ss_pred HHHHHHHHHCCCcccCHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHc---------------CCCCCCHHHHHH
Confidence 4678899999999999999 88888899999999999999999642 124899999999
Q ss_pred HHHH
Q 032126 118 ALRE 121 (147)
Q Consensus 118 AL~E 121 (147)
|.+.
T Consensus 62 Ai~~ 65 (68)
T 1taf_A 62 ATEV 65 (68)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9864
No 11
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=95.94 E-value=0.021 Score=41.98 Aligned_cols=97 Identities=20% Similarity=0.237 Sum_probs=64.3
Q ss_pred CCCCCcCCCCCCCCCCCchHHHHHHHHc--------CCC-CCCCcHHHHHHHHHhCCCCCCCcccccccccchhHHHHHH
Q 032126 1 MNHNNNFQQSSDGRHDDDAALTEFLSSL--------MGY-TPTIPDELVEHYLAKSGFQCPDVRLNCCLCFCRIRLVAVA 71 (147)
Q Consensus 1 ~~~~~~~~~~~~~~~~~d~~L~efl~~L--------ddY-~P~IPD~Vt~yyL~~aGf~~~D~Rv~~~~~~~~~RLvSLA 71 (147)
|+.-.|..++-.+.. ...|.+|+..- .|+ .+-+|=+-+..+|+. + ..-.+| ..-=.=++|-|
T Consensus 1 ~~~~~~~~~~l~~~~--~~~l~~fw~~~~~~~e~~~~d~k~~~lPvaRIkrImK~-d--~~~~~i----s~eA~v~la~a 71 (119)
T 4g92_C 1 MGTWANVNQGLQGTA--RDILTTYWQHVINHLESDNHDYKIHQLPLARIKKVMKA-D--PEVKMI----SAEAPILFAKG 71 (119)
T ss_dssp -CTTHHHHTTCCTHH--HHHHHHHHHHHHHHHTCSCCCSSCCSSCHHHHHHHHHT-S--TTCCEE----CTHHHHHHHHH
T ss_pred CchhhhhhhccchHH--HHHHHHHHHHHHHHHHhcccccccCCCCHHHHHHHHhh-C--Cccccc----cHHHHHHHHHH
Confidence 333333344433333 46788887543 134 566999999999974 2 112222 22224489999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhchhcccccccceeeeHHHHHHHHHH
Q 032126 72 TQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALRE 121 (147)
Q Consensus 72 aQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~r~vLTmEDLs~AL~E 121 (147)
++-||++|+..|..+|+. .+|-+++-+||..|++.
T Consensus 72 ~E~Fi~~L~~~A~~~a~~---------------~krktI~~~di~~Av~~ 106 (119)
T 4g92_C 72 CDVFITELTMRAWIHAED---------------NKRRTLQRSDIAAALSK 106 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH---------------TTCSEECHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHh---------------cccCccCHHHHHHHHhc
Confidence 999999999999998842 22448999999999975
No 12
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=95.50 E-value=0.064 Score=36.27 Aligned_cols=67 Identities=21% Similarity=0.217 Sum_probs=50.4
Q ss_pred CCCcHHHHHHHHHhC-CCCCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhchhcccccccceeee
Q 032126 33 PTIPDELVEHYLAKS-GFQCPDVRLNCCLCFCRIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRLILT 111 (147)
Q Consensus 33 P~IPD~Vt~yyL~~a-Gf~~~D~Rv~~~~~~~~~RLvSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~r~vLT 111 (147)
+.+|-+.+.-+|+++ + |.+| .--=.-+|+.++.-||..|+..|.+.|+- ++|-|++
T Consensus 3 ~~LP~A~V~rI~K~~~p----~~~i----s~~A~~~i~~~~~~Fi~~la~eA~~~a~~---------------~~rKTI~ 59 (76)
T 3b0c_W 3 RTVPRGTLRKIIKKHKP----HLRL----AANTDLLVHLSFLLFLHRLAEEARTNAFE---------------NKSKIIK 59 (76)
T ss_dssp -CCCHHHHHHHHHHHCT----TCEE----CTTHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HTCSSBC
T ss_pred CcccccHHHHHHHHhCC----CCcc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------cCCCCCC
Confidence 578999999999965 4 3333 11114589999999999999999999852 2345999
Q ss_pred HHHHHHHHHHh
Q 032126 112 MEDLSKALREY 122 (147)
Q Consensus 112 mEDLs~AL~Ey 122 (147)
-||+..||++.
T Consensus 60 ~~dI~~A~~~l 70 (76)
T 3b0c_W 60 PEHTIAAAKVI 70 (76)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999863
No 13
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=95.03 E-value=0.092 Score=40.68 Aligned_cols=70 Identities=17% Similarity=0.097 Sum_probs=54.9
Q ss_pred CCCcHHHHHHHHHhC-CCCCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhchhcccccccceeee
Q 032126 33 PTIPDELVEHYLAKS-GFQCPDVRLNCCLCFCRIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRLILT 111 (147)
Q Consensus 33 P~IPD~Vt~yyL~~a-Gf~~~D~Rv~~~~~~~~~RLvSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~r~vLT 111 (147)
+-+|-+.+.-++.++ |- .|| ..-=+-.++=+.+.|+..|+.+|-.+|+ +.+|-|++
T Consensus 3 ~~LP~a~V~Riik~~lg~----~rV----S~dA~~~l~~~l~~f~~~i~~~A~~~a~---------------ha~RKTv~ 59 (154)
T 1f1e_A 3 VELPKAAIERIFRQGIGE----RRL----SQDAKDTIYDFVPTMAEYVANAAKSVLD---------------ASGKKTLM 59 (154)
T ss_dssp -CCCHHHHHHHHHTTSTT----CEE----CHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------TTTCSEEC
T ss_pred ccCCccHHHHHHHhcCCc----cch----hHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HcCCCcCC
Confidence 468999999999999 74 666 1111346677888999999999999984 44566999
Q ss_pred HHHHHHHHHHhCcc
Q 032126 112 MEDLSKALREYGVN 125 (147)
Q Consensus 112 mEDLs~AL~EyGIn 125 (147)
-+|+..||...|+.
T Consensus 60 a~DV~~a~~~lg~~ 73 (154)
T 1f1e_A 60 EEHLKALADVLMVE 73 (154)
T ss_dssp HHHHHHHHHHHTCT
T ss_pred HHHHHHHHHhcccc
Confidence 99999999998864
No 14
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=94.69 E-value=0.065 Score=37.88 Aligned_cols=69 Identities=19% Similarity=0.219 Sum_probs=50.4
Q ss_pred CCCCcHHHHHHHHHhCCCCCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhchhcccccccceeee
Q 032126 32 TPTIPDELVEHYLAKSGFQCPDVRLNCCLCFCRIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRLILT 111 (147)
Q Consensus 32 ~P~IPD~Vt~yyL~~aGf~~~D~Rv~~~~~~~~~RLvSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~r~vLT 111 (147)
.+.+|=+-+..+|+..+-- .|| ..-=.-++|-|++-||.+++..|+.+++. .+|-+++
T Consensus 17 ~~~lP~arIkrImK~~~~~---~~i----s~eA~~~laka~E~Fi~~l~~~A~~~a~~---------------~krktI~ 74 (97)
T 1n1j_B 17 VQELPLARIKKIMKLDEDV---KMI----SAEAPVLFAKAAQIFITELTLRAWIHTED---------------NKRRTLQ 74 (97)
T ss_dssp ---CCHHHHHHHHTTSTTC---CCB----CTHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------TTCSEEC
T ss_pred CCcCCHHHHHHHHccCccc---ccc----ChHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------cCCccCC
Confidence 5679999999999988531 222 11113489999999999999999998741 2355999
Q ss_pred HHHHHHHHHHh
Q 032126 112 MEDLSKALREY 122 (147)
Q Consensus 112 mEDLs~AL~Ey 122 (147)
-+||..|+...
T Consensus 75 ~~di~~Av~~~ 85 (97)
T 1n1j_B 75 RNDIAMAITKF 85 (97)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHhcC
Confidence 99999998753
No 15
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=94.67 E-value=0.22 Score=34.64 Aligned_cols=69 Identities=16% Similarity=0.269 Sum_probs=54.0
Q ss_pred CchHHHHHHHHcCCCCCCCcHHHHHHHHHhCCCCCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 032126 17 DDAALTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLNCCLCFCRIRLVAVATQKFVAEVATDALQQCKARQAAVVK 96 (147)
Q Consensus 17 ~d~~L~efl~~LddY~P~IPD~Vt~yyL~~aGf~~~D~Rv~~~~~~~~~RLvSLAaQKFisDIa~DA~q~~kiR~~~~~~ 96 (147)
.-..|.+|+.+++-- .+-||-+ .-++.=.|..||.+|+..|.+.||-|.+
T Consensus 7 ~k~~L~~Lv~~idp~------------------~~ld~~v--------ee~ll~lADdFV~~V~~~ac~lAKhR~s---- 56 (76)
T 1h3o_B 7 TKKKLQDLVREVDPN------------------EQLDEDV--------EEMLLQIADDFIESVVTAACQLARHRKS---- 56 (76)
T ss_dssp CHHHHHHHHHHHCSS------------------CCCCHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred cHHHHHHHHHhcCCC------------------CCCCHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhcCC----
Confidence 356788888888632 3458888 8999999999999999999999998843
Q ss_pred chhcccccccceeeeHHHHHHHHH-HhCccc
Q 032126 97 DKRDKQQKDKRLILTMEDLSKALR-EYGVNV 126 (147)
Q Consensus 97 ~k~~~~~kd~r~vLTmEDLs~AL~-EyGInv 126 (147)
-+|..-|+.-.|+ +|||.|
T Consensus 57 -----------~~le~kDvql~Ler~wni~i 76 (76)
T 1h3o_B 57 -----------STLEVKDVQLHLERQWNMWI 76 (76)
T ss_dssp -----------CEECHHHHHHHHHHHTCCCC
T ss_pred -----------CCccHHHHHHHHHhhcCCcC
Confidence 3778888888774 566653
No 16
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=94.41 E-value=0.064 Score=40.06 Aligned_cols=71 Identities=14% Similarity=0.185 Sum_probs=51.6
Q ss_pred CCCcHHHHHHHHHhCCCCCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhchhcccccccceeeeH
Q 032126 33 PTIPDELVEHYLAKSGFQCPDVRLNCCLCFCRIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRLILTM 112 (147)
Q Consensus 33 P~IPD~Vt~yyL~~aGf~~~D~Rv~~~~~~~~~RLvSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~r~vLTm 112 (147)
..+|-+.+.-+++.++= +..+| .--=.-+|+-|+.-||..|+..|.++|+ +++|-+++-
T Consensus 8 ~~LP~A~I~rImK~~~p--d~~~i----S~dA~~~l~ka~e~FI~~lt~~A~~~a~---------------~~kRKTI~~ 66 (128)
T 2byk_B 8 LNLPNAVIGRLIKEALP--ESASV----SKEARAAIARAASVFAIFVTSSSTALAH---------------KQNHKTITA 66 (128)
T ss_dssp ---CCSHHHHHHHHHSC--TTCEE----CHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HTTCSSCCH
T ss_pred ccCCHHHHHHHHHHhCc--ccceE----CHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HcCCCccCH
Confidence 35788889999997652 22333 1111348999999999999999999984 233559999
Q ss_pred HHHHHHHHHhCc
Q 032126 113 EDLSKALREYGV 124 (147)
Q Consensus 113 EDLs~AL~EyGI 124 (147)
+|+..||.+.|.
T Consensus 67 ~Dv~~Al~~l~f 78 (128)
T 2byk_B 67 KDILQTLTELDF 78 (128)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHcCc
Confidence 999999999884
No 17
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=93.49 E-value=0.26 Score=39.16 Aligned_cols=70 Identities=21% Similarity=0.367 Sum_probs=54.9
Q ss_pred CCcHHHHHHHHHhCCCCCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhchhcccccccceeeeHH
Q 032126 34 TIPDELVEHYLAKSGFQCPDVRLNCCLCFCRIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRLILTME 113 (147)
Q Consensus 34 ~IPD~Vt~yyL~~aGf~~~D~Rv~~~~~~~~~RLvSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~r~vLTmE 113 (147)
.+|-+.+.-+++.+|= +.|| .--=+-+|.=++.-||+-|+..|...|+ +++|-|++-|
T Consensus 15 ~LP~A~V~RImK~alp---~~rI----SkDA~~al~ec~~eFI~~LtseA~e~a~---------------~~~RKTI~~e 72 (179)
T 1jfi_B 15 TIPRAAINKMIKETLP---NVRV----ANDARELVVNCCTEFIHLISSEANEICN---------------KSEKKTISPE 72 (179)
T ss_dssp CCCHHHHHHHHHHHST---TCCB----CHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HTTCSSBCHH
T ss_pred hcCHHHHHHHHHHhCC---cccc----CHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HcCCCcCCHH
Confidence 6999999999999972 4555 1111347777888999999999999884 2234599999
Q ss_pred HHHHHHHHhCcc
Q 032126 114 DLSKALREYGVN 125 (147)
Q Consensus 114 DLs~AL~EyGIn 125 (147)
|+..||.+-|..
T Consensus 73 DVl~Al~~LgF~ 84 (179)
T 1jfi_B 73 HVIQALESLGFG 84 (179)
T ss_dssp HHHHHHHHHTTG
T ss_pred HHHHHHHhcChH
Confidence 999999998874
No 18
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=92.38 E-value=0.21 Score=37.95 Aligned_cols=70 Identities=21% Similarity=0.185 Sum_probs=40.9
Q ss_pred CCCCCcHHHHHHHHHhCCCCCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhchhcccccccceee
Q 032126 31 YTPTIPDELVEHYLAKSGFQCPDVRLNCCLCFCRIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRLIL 110 (147)
Q Consensus 31 Y~P~IPD~Vt~yyL~~aGf~~~D~Rv~~~~~~~~~RLvSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~r~vL 110 (147)
..+.+|=+-+..+|+.. +|... +..-=.-+||-|+.-||..++..|+.+|+ + +.+|-+|
T Consensus 16 ~~~~LPlaRIKrIMK~d----pdv~~---Is~eA~vliakA~ElFI~~Lt~~A~~~a~-~-------------~~kRKtI 74 (140)
T 2byk_A 16 AETFLPLSRVRTIMKSS----MDTGL---ITNEVLFLMTKCTELFVRHLAGAAYTEEF-G-------------QRPGEAL 74 (140)
T ss_dssp -------------CCSS----SSCSC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-------------TCCSCEE
T ss_pred cCCCCCHHHHHHHHhcC----ccccc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-------------hcCCccc
Confidence 34567888888888754 23221 12222458999999999999999999983 1 2345599
Q ss_pred eHHHHHHHHHH
Q 032126 111 TMEDLSKALRE 121 (147)
Q Consensus 111 TmEDLs~AL~E 121 (147)
+-+||..|+..
T Consensus 75 ~~~Dl~~AV~~ 85 (140)
T 2byk_A 75 KYEHLSQVVNK 85 (140)
T ss_dssp CHHHHHHHHHT
T ss_pred CHHHHHHHHhc
Confidence 99999999985
No 19
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=90.75 E-value=0.35 Score=34.25 Aligned_cols=67 Identities=13% Similarity=0.220 Sum_probs=47.7
Q ss_pred CCCCCCcHHHHHHHHHhCCCC---CCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhchhccccccc
Q 032126 30 GYTPTIPDELVEHYLAKSGFQ---CPDVRLNCCLCFCRIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDK 106 (147)
Q Consensus 30 dY~P~IPD~Vt~yyL~~aGf~---~~D~Rv~~~~~~~~~RLvSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~ 106 (147)
.+.+.+|-+-+..+|+..+-- ..+.. -+++-|++-|+.+|+..|+.+++- .+
T Consensus 7 k~~~~fPvaRIkrimK~~~~~~~vs~~A~----------v~la~a~E~Fi~el~~~A~~~a~~---------------~k 61 (98)
T 1jfi_A 7 KYNARFPPARIKKIMQTDEEIGKVAAAVP----------VIISRALELFLESLLKKACQVTQS---------------RN 61 (98)
T ss_dssp ---CCCCHHHHHHHHTTSTTCCCBCTTHH----------HHHHHHHHHHHHHHHHHHHHHHHT---------------C-
T ss_pred ccCCCCChHHHHHHHHcCccccccchHHH----------HHHHHHHHHHHHHHHHHHHHHHHH---------------cC
Confidence 356788999999999975542 13333 489999999999999999998741 22
Q ss_pred ceeeeHHHHHHHHHH
Q 032126 107 RLILTMEDLSKALRE 121 (147)
Q Consensus 107 r~vLTmEDLs~AL~E 121 (147)
|-+|+-+||..|+..
T Consensus 62 rktI~~~di~~av~~ 76 (98)
T 1jfi_A 62 AKTMTTSHLKQCIEL 76 (98)
T ss_dssp --CBCHHHHHTTCC-
T ss_pred CCeecHHHHHHHHhc
Confidence 458888999888764
No 20
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=89.97 E-value=1 Score=34.74 Aligned_cols=66 Identities=20% Similarity=0.192 Sum_probs=48.5
Q ss_pred CCcHHHHHHHHHhCCCCCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhchhcccccccceeeeHH
Q 032126 34 TIPDELVEHYLAKSGFQCPDVRLNCCLCFCRIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRLILTME 113 (147)
Q Consensus 34 ~IPD~Vt~yyL~~aGf~~~D~Rv~~~~~~~~~RLvSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~r~vLTmE 113 (147)
.||-+.+.-+|.++|- .|| ..-=+-.+.=+.+.|++.|+.+|-.+|+ +.+|-++|-|
T Consensus 82 ~lP~a~V~Ri~k~~g~----~RV----S~~A~~~l~~~le~f~~~I~~~A~~~a~---------------ha~RKTIt~e 138 (154)
T 1f1e_A 82 LFGRATVRRILKRAGI----ERA----SSDAVDLYNKLICRATEELGEKAAEYAD---------------EDGRKTVQGE 138 (154)
T ss_dssp CCCHHHHHHHHHHTTC----CEE----CHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HTTCSEECHH
T ss_pred cCCccHHHHHHHHcCC----ccc----hHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HcCCCccCHH
Confidence 6899999999999964 465 0001224455667889999999999884 3345589999
Q ss_pred HHHHHHHHh
Q 032126 114 DLSKALREY 122 (147)
Q Consensus 114 DLs~AL~Ey 122 (147)
|+..||+..
T Consensus 139 DV~~Al~~~ 147 (154)
T 1f1e_A 139 DVEKAITYS 147 (154)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999999753
No 21
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=88.52 E-value=3 Score=29.03 Aligned_cols=72 Identities=14% Similarity=0.112 Sum_probs=44.1
Q ss_pred CCCCCCCcHHHHHHHHHhCCCCCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhchhcccccccce
Q 032126 29 MGYTPTIPDELVEHYLAKSGFQCPDVRLNCCLCFCRIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRL 108 (147)
Q Consensus 29 ddY~P~IPD~Vt~yyL~~aGf~~~D~Rv~~~~~~~~~RLvSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~r~ 108 (147)
++..|+||.+++.-+|+. .|+-...|| ..=---+..+++-=.+..|.+-+-. ..+ -+...
T Consensus 3 ~~~~~~~~~~lI~ril~~-~f~~~ktrI--------~~dAl~l~aeyl~iFV~EAv~RA~~----~a~-------~e~~~ 62 (81)
T 3b0b_C 3 EEREGGFRKETVERLLRL-HFRDGRTRV--------NGDALLLMAELLKVFVREAAARAAR----QAQ-------AEDLE 62 (81)
T ss_dssp ----CCCCHHHHHHHHHH-HCCSTTCEE--------CHHHHHHHHHHHHHHHHHHHHHHHH----HHH-------HTTCS
T ss_pred CccCCCCCHHHHHHHHHH-HhccCcccc--------cHHHHHHHHHHHHHHHHHHHHHHHH----HHH-------hCCCC
Confidence 567899999999999999 999888888 4333333455555445555442211 111 11224
Q ss_pred eeeHHHHHHHHH
Q 032126 109 ILTMEDLSKALR 120 (147)
Q Consensus 109 vLTmEDLs~AL~ 120 (147)
.|+.|||.+.+.
T Consensus 63 ~le~~~LEki~p 74 (81)
T 3b0b_C 63 KVDIEHVEKVLP 74 (81)
T ss_dssp EECHHHHHHHHH
T ss_pred eecHHHHHHHHH
Confidence 899999998764
No 22
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=88.08 E-value=1.5 Score=32.75 Aligned_cols=47 Identities=23% Similarity=0.287 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhchhcccccccceeeeHHHHHHHHHHhCccc
Q 032126 65 IRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREYGVNV 126 (147)
Q Consensus 65 ~RLvSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~r~vLTmEDLs~AL~EyGInv 126 (147)
.--+.=+...|+.+|+.||..|++-. +|-|.|.+|...||+..|.++
T Consensus 70 y~e~r~vl~~~l~~i~rdav~yaehA---------------~RKTVta~DV~~Alkr~G~~l 116 (121)
T 2ly8_A 70 YEEVRAVLKSFLESVIRDSVTYTEHA---------------KRKTVTSLDVVYALKRQGRTL 116 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---------------TCCCBCHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc---------------CCCcCcHHHHHHHHHhCCCcC
Confidence 55566678899999999999998631 133899999999999999754
No 23
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=85.75 E-value=6.9 Score=27.53 Aligned_cols=70 Identities=16% Similarity=0.159 Sum_probs=43.9
Q ss_pred CCCCCcHHHHHHHHHhCCCCCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhchhcccccccceee
Q 032126 31 YTPTIPDELVEHYLAKSGFQCPDVRLNCCLCFCRIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRLIL 110 (147)
Q Consensus 31 Y~P~IPD~Vt~yyL~~aGf~~~D~Rv~~~~~~~~~RLvSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~r~vL 110 (147)
-.|+||.+++.-+|. ..|+-...|| ..=---+..+++-=.+.+|..-+-.... ..+ .-+|
T Consensus 9 ~~~~i~~~li~ril~-~~F~~~kTkI--------s~dAl~l~aeyl~iFV~EAv~RA~~~a~----------~e~-~~~l 68 (84)
T 4dra_E 9 AGSGFRKELVSRLLH-LHFKDDKTKV--------SGDALQLMVELLKVFVVEAAVRGVRQAQ----------AED-ALRV 68 (84)
T ss_dssp --CCCCHHHHHHHHH-TTCSSTTCEE--------CHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HTT-CSSB
T ss_pred CCCCCCHHHHHHHHH-HHhcCCCccc--------cHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hcC-CCcc
Confidence 479999999999999 9999888888 4433334445544444555443211100 011 2369
Q ss_pred eHHHHHHHHH
Q 032126 111 TMEDLSKALR 120 (147)
Q Consensus 111 TmEDLs~AL~ 120 (147)
+.|||.+.|-
T Consensus 69 e~e~LEki~p 78 (84)
T 4dra_E 69 DVDQLEKVLP 78 (84)
T ss_dssp CHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 9999998764
No 24
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=83.73 E-value=2.7 Score=30.22 Aligned_cols=72 Identities=15% Similarity=0.214 Sum_probs=39.2
Q ss_pred CCcHHHHHHHHHhCCCCCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhchhcccccccceeeeHH
Q 032126 34 TIPDELVEHYLAKSGFQCPDVRLNCCLCFCRIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRLILTME 113 (147)
Q Consensus 34 ~IPD~Vt~yyL~~aGf~~~D~Rv~~~~~~~~~RLvSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~r~vLTmE 113 (147)
.||.+++.-+|. -.|.-.+-|| .+=---+.+|+|-=-+.+|.--|.-+..+..+. ...+...+|++|
T Consensus 1 ~ip~~llaRIL~-~~F~~~kTrI--------t~da~~lv~kY~diFVrEAv~Rs~e~ke~~~~~----~~~~~d~~Leve 67 (88)
T 3v9r_B 1 MLSKEALIKILS-QNEGGNDMKI--------ADEVVPMIQKYLDIFIDEAVLRSLQSHKDINGE----RGDKSPLELSHQ 67 (88)
T ss_dssp CCCSHHHHHHHT-TTSCSSCCEE--------CTTTHHHHHHHHHHHHHHHHHHHHHHHHCC---------------CCHH
T ss_pred CCCHHHHHHHHH-HHhCCCCcee--------cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc----ccCCCCCeeehH
Confidence 389999999999 8999999998 544344444544444444443322222111111 123444789999
Q ss_pred HHHHH
Q 032126 114 DLSKA 118 (147)
Q Consensus 114 DLs~A 118 (147)
||.+-
T Consensus 68 DLEki 72 (88)
T 3v9r_B 68 DLERI 72 (88)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99864
No 25
>1h3o_A Transcription initiation factor TFIID 135 kDa subunit; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=71.91 E-value=4 Score=28.30 Aligned_cols=44 Identities=14% Similarity=0.118 Sum_probs=32.3
Q ss_pred HHHHHhCCCCCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032126 41 EHYLAKSGFQCPDVRLNCCLCFCRIRLVAVATQKFVAEVATDALQQCKARQA 92 (147)
Q Consensus 41 ~yyL~~aGf~~~D~Rv~~~~~~~~~RLvSLAaQKFisDIa~DA~q~~kiR~~ 92 (147)
..+.++.|..-..+-| .++||+|+|-=+-.+...--..++.|.-
T Consensus 13 ~~I~~k~gl~~~~~dv--------~~~iS~a~qeRLr~llekl~~~a~~R~~ 56 (75)
T 1h3o_A 13 LEIGKKHGITELHPDV--------VSYVSHATQQRLQNLVEKISETAQQKNF 56 (75)
T ss_dssp HHHHHTTTCCEECTTH--------HHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHhcCCCcCChhH--------HHHhHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3577899999999999 9999999999888888777666666643
No 26
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=71.55 E-value=9.2 Score=24.54 Aligned_cols=59 Identities=20% Similarity=0.254 Sum_probs=37.2
Q ss_pred HHHHHHHHhCCCCCCCcccccccccchhHHHHHHHHHH----HHHHHHHHHHHHHHhhhhhhhchhcccccccceeeeHH
Q 032126 38 ELVEHYLAKSGFQCPDVRLNCCLCFCRIRLVAVATQKF----VAEVATDALQQCKARQAAVVKDKRDKQQKDKRLILTME 113 (147)
Q Consensus 38 ~Vt~yyL~~aGf~~~D~Rv~~~~~~~~~RLvSLAaQKF----isDIa~DA~q~~kiR~~~~~~~k~~~~~kd~r~vLTmE 113 (147)
++...||.+-.+. +|.-+ ..|. -.|.-| |..++.+|...+ +|. .+..+|++
T Consensus 10 ~Il~~~l~~~~~~-~~~dl--------~~la-~~t~G~SGADi~~l~~eA~~~a-~~~--------------~~~~i~~~ 64 (78)
T 3kw6_A 10 DILKIHSRKMNLT-RGINL--------RKIA-ELMPGASGAEVKGVCTEAGMYA-LRE--------------RRVHVTQE 64 (78)
T ss_dssp HHHHHHHTTSEEC-TTCCH--------HHHH-HTCTTCCHHHHHHHHHHHHHHH-HHT--------------TCSEECHH
T ss_pred HHHHHHhcCCCCC-CccCH--------HHHH-HHcCCCCHHHHHHHHHHHHHHH-HHh--------------CCCCCCHH
Confidence 3556666654442 46666 4443 355556 666777776665 331 13579999
Q ss_pred HHHHHHHH
Q 032126 114 DLSKALRE 121 (147)
Q Consensus 114 DLs~AL~E 121 (147)
||..||.+
T Consensus 65 d~~~Al~~ 72 (78)
T 3kw6_A 65 DFEMAVAK 72 (78)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999986
No 27
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.85 E-value=2.9 Score=29.36 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=18.2
Q ss_pred cCCCCCCCcHHHHHHHHHhCCCC
Q 032126 28 LMGYTPTIPDELVEHYLAKSGFQ 50 (147)
Q Consensus 28 LddY~P~IPD~Vt~yyL~~aGf~ 50 (147)
|..==|.|||.|+..+|.+++-+
T Consensus 17 LkQrFPEvPd~VVsqc~~qN~~N 39 (75)
T 2dae_A 17 LRQKFPEVPEVVVSRCMLQNNNN 39 (75)
T ss_dssp HHHHSSSSCHHHHHHHHTTTTSC
T ss_pred HHHhcccCcHHHHHHHHHHhccC
Confidence 33345999999999999998753
No 28
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=64.23 E-value=7.9 Score=28.18 Aligned_cols=42 Identities=21% Similarity=0.199 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhchhcccccccceeeeHHHHHHHHHH
Q 032126 65 IRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALRE 121 (147)
Q Consensus 65 ~RLvSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~r~vLTmEDLs~AL~E 121 (147)
+.-|+=.+.+|+.+|+.||..|++-. +|-++++||+..|++.
T Consensus 45 i~aL~E~~~~~~~~ia~Da~~fA~HA---------------gRkTI~~eDV~La~Rr 86 (107)
T 3b0b_B 45 VAAISEITFRQCENFARDLEMFARHA---------------KRSTITSEDVKLLARR 86 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---------------TCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc---------------CcCcCCHHHHHHHHHh
Confidence 45556667899999999999998642 2348999999887653
No 29
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=55.51 E-value=12 Score=30.93 Aligned_cols=59 Identities=22% Similarity=0.214 Sum_probs=43.3
Q ss_pred HHHHhCCCCCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhchhcccccccceeeeHHHHHHHHHH
Q 032126 42 HYLAKSGFQCPDVRLNCCLCFCRIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALRE 121 (147)
Q Consensus 42 yyL~~aGf~~~D~Rv~~~~~~~~~RLvSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~r~vLTmEDLs~AL~E 121 (147)
-.+.++|..-----+ .--+.=+...|+.+|+.||..|++-. +|-|.|.+|+.-||+.
T Consensus 169 RlaRrgGVkRIS~~i--------yeelr~vLe~fle~IirdAv~yaeHA---------------~RKTVta~DV~~ALKr 225 (235)
T 2l5a_A 169 EDGDKGGVKRISGLI--------YEEVRAVLKSFLESVIRDSVTYTEHA---------------KRKTVTSLDVVYALKR 225 (235)
T ss_dssp TTSCCTTCCTTTTHH--------HHHHHHHHHHHHHHHHHHHHHHHHHT---------------TCCSCCHHHHHHHHHH
T ss_pred HHhhcCCchhhHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhc---------------CCCcCcHHHHHHHHHh
Confidence 467778875422224 55566678899999999999998631 1236789999999998
Q ss_pred hC
Q 032126 122 YG 123 (147)
Q Consensus 122 yG 123 (147)
.|
T Consensus 226 ~g 227 (235)
T 2l5a_A 226 QG 227 (235)
T ss_dssp HH
T ss_pred cC
Confidence 87
No 30
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.32 E-value=39 Score=29.12 Aligned_cols=26 Identities=19% Similarity=0.409 Sum_probs=17.7
Q ss_pred ceeeeHHHHHHHHHHh---CcccCCCCcc
Q 032126 107 RLILTMEDLSKALREY---GVNVKHQEYF 132 (147)
Q Consensus 107 r~vLTmEDLs~AL~Ey---GInvkrP~Yy 132 (147)
+..+|++|+..|+... ...+.+=+||
T Consensus 399 ~~~i~~~d~~~A~~~~~~~~~~~~~~d~y 427 (428)
T 4b4t_K 399 RYVILQSDLEEAYATQVKTDNTVDKFDFY 427 (428)
T ss_dssp CSSBCHHHHHHHHHHHSCSCCCSSCCCSC
T ss_pred CCCCCHHHHHHHHHHhhCccCCccHhhhh
Confidence 4579999999999752 3334444555
No 31
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=49.47 E-value=31 Score=24.26 Aligned_cols=53 Identities=19% Similarity=0.209 Sum_probs=37.2
Q ss_pred HHhCCCCCCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhchhcccccccceeeeHHHHHHHHH
Q 032126 44 LAKSGFQCPDVRLNCCLCFCRIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALR 120 (147)
Q Consensus 44 L~~aGf~~~D~Rv~~~~~~~~~RLvSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~r~vLTmEDLs~AL~ 120 (147)
+.+.|++.+. .. +-.|+=.+-+++.+|+.|+-.|++-- +|-|.++||+..+++
T Consensus 26 ~~~~g~~vs~-~~--------i~aL~e~~~~~~~~ia~Dl~~fA~HA---------------gRkTI~~eDV~L~~R 78 (90)
T 3v9r_A 26 LSSEDIKYTP-RF--------INSLLELAYLQLGEMGSDLQAFARHA---------------GRGVVNKSDLMLYLR 78 (90)
T ss_dssp SCSSCCCCCH-HH--------HHHHHHHHHHHHHHHHHHHHHHHHHT---------------TCSEECHHHHHHHTT
T ss_pred HHhcCceeCH-HH--------HHHHHHHHHHHHHHHHHHHHHHHHHc---------------CCCccCHHHHHHHHH
Confidence 4555676543 44 44455567788899999999998631 245899999988754
No 32
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=47.16 E-value=11 Score=27.86 Aligned_cols=41 Identities=22% Similarity=0.204 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhchhcccccccceeeeHHHHHHHHH
Q 032126 65 IRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALR 120 (147)
Q Consensus 65 ~RLvSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~r~vLTmEDLs~AL~ 120 (147)
+-.|+=++-+|+.+|+.|+-.|++-- +|-|.++||+..+++
T Consensus 53 i~aL~El~~~~~~~ia~Dl~~fAkHA---------------gRkTI~~eDV~La~R 93 (113)
T 4dra_A 53 IAAISELTFRQCENFAKDLEMFARHA---------------KRTTINTEDVKLLAR 93 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---------------TCSEECHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc---------------CCCccCHHHHHHHHH
Confidence 44555556788889999999998631 245889999887764
No 33
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=44.63 E-value=7.3 Score=26.74 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=21.7
Q ss_pred cccceeeeHHHHHHHHHHhCcccCC
Q 032126 104 KDKRLILTMEDLSKALREYGVNVKH 128 (147)
Q Consensus 104 kd~r~vLTmEDLs~AL~EyGInvkr 128 (147)
.|++-.|+=+.|...|++.||+|.|
T Consensus 32 Ed~~kPlSD~~I~~~L~~~Gi~IaR 56 (76)
T 2ahq_A 32 EDKRKPYSDQEIANILKEKGFKVAR 56 (76)
T ss_dssp CCSSSCCCHHHHHHHHTTTSSCCCH
T ss_pred cCCCCCCCHHHHHHHHHHcCCCccH
Confidence 4556689999999999999999976
No 34
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=42.31 E-value=48 Score=25.78 Aligned_cols=74 Identities=16% Similarity=0.098 Sum_probs=53.6
Q ss_pred CCCCcHHHHHHHHHhCCCCCC---CcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhchhcccccccce
Q 032126 32 TPTIPDELVEHYLAKSGFQCP---DVRLNCCLCFCRIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRL 108 (147)
Q Consensus 32 ~P~IPD~Vt~yyL~~aGf~~~---D~Rv~~~~~~~~~RLvSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~r~ 108 (147)
.-+||-.-......+.+-+.. |.|+ ..-=.-.|--|++-|+-++..||.-++. . -+|+
T Consensus 75 eLLIpKlPF~RLVREIa~~~~~~~~lRf----qs~Al~ALQEAaEayLV~LFEdanLcAi-H--------------AkRV 135 (156)
T 3r45_A 75 HLLIRKLPFSRLAREICVKFTRGVDFNW----QAQALLALQEAAEAFLVHLFEDAYLLTL-H--------------AGRV 135 (156)
T ss_dssp CCCSCHHHHHHHHHHHHHTTTTTCCCEE----EHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--------------HTCS
T ss_pred ccccccccHHHHHHHHHHHhccCcccee----cHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--------------cCcc
Confidence 357998888888888886654 5555 2222234455889999999999998873 2 1478
Q ss_pred eeeHHHHHHHHHHhCc
Q 032126 109 ILTMEDLSKALREYGV 124 (147)
Q Consensus 109 vLTmEDLs~AL~EyGI 124 (147)
||+.+|+..|..=.|+
T Consensus 136 TIm~kDIqLArrIrg~ 151 (156)
T 3r45_A 136 TLFPKDVQLARRIRGL 151 (156)
T ss_dssp EECHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHccc
Confidence 9999999999876664
No 35
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=40.26 E-value=77 Score=20.84 Aligned_cols=63 Identities=16% Similarity=0.099 Sum_probs=36.6
Q ss_pred HHHHHHHhCCCCCCCcccccccccchhHHHHHHHHHH----HHHHHHHHHHHHHHhhhhhhhchhcccccccceeeeHHH
Q 032126 39 LVEHYLAKSGFQCPDVRLNCCLCFCRIRLVAVATQKF----VAEVATDALQQCKARQAAVVKDKRDKQQKDKRLILTMED 114 (147)
Q Consensus 39 Vt~yyL~~aGf~~~D~Rv~~~~~~~~~RLvSLAaQKF----isDIa~DA~q~~kiR~~~~~~~k~~~~~kd~r~vLTmED 114 (147)
+...++.+-.+. +|+-+ ..|. -.|.-| |..++++|.-++ +|. .+..+|++|
T Consensus 9 Il~~~~~~~~~~-~dvdl--------~~lA-~~t~G~SGADl~~l~~eAa~~a-~r~--------------~~~~i~~~d 63 (88)
T 3vlf_B 9 IFRIHSKSMSVE-RGIRW--------ELIS-RLCPNSTGAELRSVCTEAGMFA-IRA--------------RRKVATEKD 63 (88)
T ss_dssp HHHHHHTTSCBC-SCCCH--------HHHH-HTCSSCCHHHHHHHHHHHHHHH-HHH--------------SCSSBCHHH
T ss_pred HHHHHHCCCCCC-CccCH--------HHHH-HHcCCCcHHHHHHHHHHHHHHH-HHh--------------ccccCCHHH
Confidence 445556554443 46656 4443 345556 566677776555 332 123599999
Q ss_pred HHHHHHHhCccc
Q 032126 115 LSKALREYGVNV 126 (147)
Q Consensus 115 Ls~AL~EyGInv 126 (147)
+..||..--..+
T Consensus 64 f~~Al~~v~~~~ 75 (88)
T 3vlf_B 64 FLKAVDKVISGY 75 (88)
T ss_dssp HHHHHHHHTC--
T ss_pred HHHHHHHHhcCc
Confidence 999999765444
No 36
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=38.40 E-value=5.6 Score=24.03 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=20.6
Q ss_pred eeeHHHHHHHHHHhCcccCCCCccc
Q 032126 109 ILTMEDLSKALREYGVNVKHQEYFA 133 (147)
Q Consensus 109 vLTmEDLs~AL~EyGInvkrP~Yy~ 133 (147)
.+|.+||...|.+.|.+|+.+--|+
T Consensus 19 ~~t~~el~~~l~~~~~~vs~~Tv~R 43 (64)
T 2p5k_A 19 IETQDELVDMLKQDGYKVTQATVSR 43 (64)
T ss_dssp CCSHHHHHHHHHHTTCCCCHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCcCHHHHHH
Confidence 6899999999999999987654444
No 37
>3c6f_A YETF protein; uncharacterized protein, predicted membrane protein, protein structure initiative, PSI-2; 2.50A {Bacillus subtilis}
Probab=38.00 E-value=11 Score=28.48 Aligned_cols=20 Identities=25% Similarity=0.371 Sum_probs=18.1
Q ss_pred cceeeeHHHHHHHHHHhCcc
Q 032126 106 KRLILTMEDLSKALREYGVN 125 (147)
Q Consensus 106 ~r~vLTmEDLs~AL~EyGIn 125 (147)
+|.-+|.+||..+|++.||.
T Consensus 31 ~k~rit~~dL~~~LR~~gi~ 50 (153)
T 3c6f_A 31 KKNKIDINQLQSMLRQAGSF 50 (153)
T ss_dssp HHTTCCHHHHHHHHHHTTCC
T ss_pred hHcCCCHHHHHHHHHHcCCC
Confidence 57789999999999999994
No 38
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=37.26 E-value=46 Score=25.43 Aligned_cols=40 Identities=23% Similarity=0.180 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhchhcccccccceeeeHHHHHHHHH
Q 032126 66 RLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALR 120 (147)
Q Consensus 66 RLvSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~r~vLTmEDLs~AL~ 120 (147)
-.|+=++-+|+.+|+.|+-.|++-- +|-|+++||+..+++
T Consensus 46 ~aL~El~~~~~e~ia~DLe~FAkHA---------------GRKTI~~eDVkLa~R 85 (140)
T 3vh5_A 46 AAISEITFRQAENFARDLEMFARHA---------------KRSTITSEDVKLLAR 85 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---------------TCSEECHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc---------------CCCccCHHHHHHHHH
Confidence 3444556778889999999998631 245788888877754
No 39
>4art_A Structural protein ORF273; viral protein, archaeal virus, extremophiles, bicaudavirus, hyper-thermostability; HET: SO4; 2.15A {Acidianus two-tailed virus} PDB: 4ats_A
Probab=35.29 E-value=13 Score=30.56 Aligned_cols=33 Identities=33% Similarity=0.585 Sum_probs=26.2
Q ss_pred chHHHHHHHHcCCCCCCCcHHHHHHHHHhCCCCC
Q 032126 18 DAALTEFLSSLMGYTPTIPDELVEHYLAKSGFQC 51 (147)
Q Consensus 18 d~~L~efl~~LddY~P~IPD~Vt~yyL~~aGf~~ 51 (147)
.+.+.|||-.++-=-|.|.| +..+||.++||..
T Consensus 96 trdfdeflfdidyglpsisd-ilkfylekagfri 128 (279)
T 4art_A 96 TRDFDEFLFDIDYGLPSISD-ILKFYLEKAGFRI 128 (279)
T ss_dssp ESCHHHHHHHHHHCCCCHHH-HHHHHHHHTTCEE
T ss_pred ccchhhhheecccCCccHHH-HHHHHHHhcccee
Confidence 45689999888755788877 5689999999953
No 40
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=34.55 E-value=20 Score=26.96 Aligned_cols=21 Identities=43% Similarity=0.514 Sum_probs=18.0
Q ss_pred eeeeHHHHHHHHHHhCcccCC
Q 032126 108 LILTMEDLSKALREYGVNVKH 128 (147)
Q Consensus 108 ~vLTmEDLs~AL~EyGInvkr 128 (147)
-..|.++|...|++.||+|..
T Consensus 18 ~~~tq~eL~~~L~~~G~~Vtq 38 (149)
T 1b4a_A 18 DIETQDELVDRLREAGFNVTQ 38 (149)
T ss_dssp CCCSHHHHHHHHHHTTCCCCH
T ss_pred CCccHHHHHHHHHHcCCCcCH
Confidence 467899999999999999863
No 41
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=33.67 E-value=70 Score=20.58 Aligned_cols=15 Identities=20% Similarity=0.310 Sum_probs=13.3
Q ss_pred eeeeHHHHHHHHHHh
Q 032126 108 LILTMEDLSKALREY 122 (147)
Q Consensus 108 ~vLTmEDLs~AL~Ey 122 (147)
..+|++|+..||.+.
T Consensus 54 ~~i~~~df~~Al~~v 68 (82)
T 2dzn_B 54 YVILQSDLEEAYATQ 68 (82)
T ss_dssp SEECHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHH
Confidence 479999999999975
No 42
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=32.61 E-value=89 Score=21.32 Aligned_cols=40 Identities=20% Similarity=0.219 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhchhcccccccceeeeHHHHHHHHHHhCc
Q 032126 70 VATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREYGV 124 (147)
Q Consensus 70 LAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~r~vLTmEDLs~AL~EyGI 124 (147)
-|++-|+-.+..||.-++.- -+|+|++-+|+..|.+-.|.
T Consensus 36 ea~Eaylv~lfeda~l~A~H---------------AkRvTi~~kDiqLa~rirg~ 75 (77)
T 2hue_B 36 EASEAYLVALFEDTNLCAIH---------------AKRVTIMPKDIQLARRIRGE 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---------------TTCSEECHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHH---------------cCCccCcHhhHHHHHHHhCc
Confidence 37888999999998887632 23689999999999988875
No 43
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=32.44 E-value=71 Score=21.18 Aligned_cols=16 Identities=31% Similarity=0.426 Sum_probs=13.5
Q ss_pred ceeeeHHHHHHHHHHh
Q 032126 107 RLILTMEDLSKALREY 122 (147)
Q Consensus 107 r~vLTmEDLs~AL~Ey 122 (147)
+..+|++|+..||...
T Consensus 66 ~~~I~~~df~~Al~~v 81 (86)
T 2krk_A 66 RVHVTQEDFEMAVAKV 81 (86)
T ss_dssp CSEECHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 3589999999999864
No 44
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=31.90 E-value=94 Score=23.60 Aligned_cols=73 Identities=16% Similarity=0.092 Sum_probs=47.6
Q ss_pred CCCcHHHHHHHHHhCCCCC---CCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhchhccccccccee
Q 032126 33 PTIPDELVEHYLAKSGFQC---PDVRLNCCLCFCRIRLVAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRLI 109 (147)
Q Consensus 33 P~IPD~Vt~yyL~~aGf~~---~D~Rv~~~~~~~~~RLvSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~r~v 109 (147)
-+||-.-......+.+-+. .|.|+ ...=.-.|--|++-|+-++..||.-++. . -+|+|
T Consensus 60 LLIpKlPF~RLVREI~~~~~~~~~~Rf----q~~Al~ALQEAaEayLv~LFEdanlcAi-H--------------AkRVT 120 (140)
T 3nqu_A 60 LLIRKLPFSRLAREICVKFTRGVDFNW----QAQALLALQEAAEAFLVHLFEDAYLLTL-H--------------AGRVT 120 (140)
T ss_dssp CCSCTTHHHHHHHHHHHHHHTTCCCEE----CHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--------------TTCSE
T ss_pred cccccccHHHHHHHHHHHhccccccee----cHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--------------cCccc
Confidence 4566655555555555332 25554 1111234445888999999999988773 2 24789
Q ss_pred eeHHHHHHHHHHhCc
Q 032126 110 LTMEDLSKALREYGV 124 (147)
Q Consensus 110 LTmEDLs~AL~EyGI 124 (147)
|+.+|+..|..=.|+
T Consensus 121 Im~kDiqLArrirg~ 135 (140)
T 3nqu_A 121 LFPKDVQLARRIRGL 135 (140)
T ss_dssp ECHHHHHHHHHHHC-
T ss_pred ccHHHHHHHHHhccc
Confidence 999999999988886
No 45
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=30.38 E-value=1.3e+02 Score=23.20 Aligned_cols=15 Identities=7% Similarity=0.191 Sum_probs=12.5
Q ss_pred ceeeeHHHHHHHHHH
Q 032126 107 RLILTMEDLSKALRE 121 (147)
Q Consensus 107 r~vLTmEDLs~AL~E 121 (147)
+-.+|.+|+..|+..
T Consensus 315 ~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 315 GTEVQVDDIKRVYSL 329 (368)
T ss_dssp CSSBCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 347899999999986
No 46
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=29.06 E-value=33 Score=21.80 Aligned_cols=18 Identities=28% Similarity=0.342 Sum_probs=16.5
Q ss_pred eeeHHHHHHHHHHhCccc
Q 032126 109 ILTMEDLSKALREYGVNV 126 (147)
Q Consensus 109 vLTmEDLs~AL~EyGInv 126 (147)
.||+.+|-..|+.+|+.+
T Consensus 7 kltV~eLK~~Lk~RGL~~ 24 (51)
T 1h1j_S 7 SLTVVQLKDLLTKRNLSV 24 (51)
T ss_dssp GCCHHHHHHHHHHTTCCC
T ss_pred HCcHHHHHHHHHHcCCCC
Confidence 589999999999999987
No 47
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=28.59 E-value=94 Score=21.48 Aligned_cols=42 Identities=24% Similarity=0.264 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhchhcccccccceeeeHHHHHHHHHHhCc
Q 032126 68 VAVATQKFVAEVATDALQQCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREYGV 124 (147)
Q Consensus 68 vSLAaQKFisDIa~DA~q~~kiR~~~~~~~k~~~~~kd~r~vLTmEDLs~AL~EyGI 124 (147)
+--|++-|+-++..||.-++. . -+|+|+..+|+..|.+=+|.
T Consensus 36 LQea~E~ylv~Lfeda~lcAi-H--------------AkRvTi~~kDiqLa~rirg~ 77 (82)
T 3nqj_A 36 LQEAAEAFLVHLFEDAYLLTL-H--------------AGRVTLFPKDVQLARRIRGL 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-H--------------TTCSSBCHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHH-H--------------cCCccCcHHHHHHHHHHccc
Confidence 444778888888888888763 2 24789999999999887775
No 48
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=28.04 E-value=31 Score=24.33 Aligned_cols=25 Identities=16% Similarity=0.125 Sum_probs=22.1
Q ss_pred eeeHHHHHHHHHHhCcccCCCCccc
Q 032126 109 ILTMEDLSKALREYGVNVKHQEYFA 133 (147)
Q Consensus 109 vLTmEDLs~AL~EyGInvkrP~Yy~ 133 (147)
.|+-+++..+|.+++.-|+||=-..
T Consensus 79 ~ls~~~~~~lm~~~p~LikRPIv~~ 103 (121)
T 3rdw_A 79 GLTQDQLLQAMADNPKLIERPIVVT 103 (121)
T ss_dssp TCCHHHHHHHHHHCGGGBCCCEEEE
T ss_pred cCCHHHHHHHHHhCccceeCCEEEE
Confidence 5899999999999999999996543
No 49
>2rrh_A VIP peptides; peptide hormone, hormone; NMR {Homo sapiens} PDB: 2rri_A
Probab=27.69 E-value=36 Score=19.45 Aligned_cols=15 Identities=13% Similarity=0.308 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHH
Q 032126 67 LVAVATQKFVAEVAT 81 (147)
Q Consensus 67 LvSLAaQKFisDIa~ 81 (147)
|=.+++||||..+.+
T Consensus 14 l~~~~ak~fl~~l~~ 28 (29)
T 2rrh_A 14 RKQMAVKKYLNSILN 28 (29)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 456899999988764
No 50
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=27.05 E-value=29 Score=25.54 Aligned_cols=17 Identities=6% Similarity=0.016 Sum_probs=11.9
Q ss_pred cceeeeHHHHHHHHHHh
Q 032126 106 KRLILTMEDLSKALREY 122 (147)
Q Consensus 106 ~r~vLTmEDLs~AL~Ey 122 (147)
.+..+|++|+..|+.+.
T Consensus 233 ~~~~i~~~d~~~a~~~~ 249 (262)
T 2qz4_A 233 GHTSVHTLNFEYAVERV 249 (262)
T ss_dssp ----CCBCCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHh
Confidence 35689999999999875
No 51
>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}
Probab=26.86 E-value=33 Score=24.13 Aligned_cols=25 Identities=16% Similarity=0.069 Sum_probs=22.2
Q ss_pred eeeHHHHHHHHHHhCcccCCCCccc
Q 032126 109 ILTMEDLSKALREYGVNVKHQEYFA 133 (147)
Q Consensus 109 vLTmEDLs~AL~EyGInvkrP~Yy~ 133 (147)
.|+-+++..+|.+++.-|+||=-..
T Consensus 78 ~ls~~~~~~lm~~~p~LikRPIv~~ 102 (119)
T 3f0i_A 78 QLSDDALFAAMAEHPKLIERPIVVC 102 (119)
T ss_dssp TCCHHHHHHHHHHCGGGBCSCEEEE
T ss_pred cCCHHHHHHHHHhChhheeCCEEEE
Confidence 5899999999999999999996543
No 52
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=26.46 E-value=69 Score=22.45 Aligned_cols=66 Identities=11% Similarity=0.073 Sum_probs=42.7
Q ss_pred hHHHHHHHHcCCCCCCCcHHHHHHHHHhCCCCC-----CCcccccccccchhHHHHHHHHHHHHHHHHHHHH
Q 032126 19 AALTEFLSSLMGYTPTIPDELVEHYLAKSGFQC-----PDVRLNCCLCFCRIRLVAVATQKFVAEVATDALQ 85 (147)
Q Consensus 19 ~~L~efl~~LddY~P~IPD~Vt~yyL~~aGf~~-----~D~Rv~~~~~~~~~RLvSLAaQKFisDIa~DA~q 85 (147)
..+.+++..= ...-++|..++..++...|+.. ..+...+++..++.+-.+-+.+.|+.-|..-.-+
T Consensus 151 ~~~~~~v~~g-~giailp~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 221 (241)
T 3oxn_A 151 EAALAIVDTL-PIIITVPADLAYLVAERYDLVVKPLPFQFTPFDYSMIWHARCEHSPAQEWLRSVVREECSR 221 (241)
T ss_dssp HHHHHHC--C-CCEEEEEHHHHHHHHHHTTEEEECCSSCCCCCCEEEEEEGGGTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC-CeEEEcHHHHHHHhcccCCceEeCCCCCCCcccEEEEEcCcCCCCchhHHHHHHHHHHHHH
Confidence 3344444332 3445789999999988777642 2335556777788888888888888766554433
No 53
>1uw4_B UPF2, regulator of nonsense transcripts 2; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: a.118.1.14
Probab=26.34 E-value=21 Score=29.24 Aligned_cols=54 Identities=17% Similarity=0.337 Sum_probs=43.0
Q ss_pred chHHHHHHHHcCCCCCCCcHHHHHHHHH--hCCCCCCCcccccccccchhHHHHHHHHHHHHHHH
Q 032126 18 DAALTEFLSSLMGYTPTIPDELVEHYLA--KSGFQCPDVRLNCCLCFCRIRLVAVATQKFVAEVA 80 (147)
Q Consensus 18 d~~L~efl~~LddY~P~IPD~Vt~yyL~--~aGf~~~D~Rv~~~~~~~~~RLvSLAaQKFisDIa 80 (147)
=..|+.++..|-.|.|-+.=.|+|-.|+ +.|++.+|++. ++ --+|.=||+.++-
T Consensus 57 I~~lA~ll~~L~~~~~~~~i~vVD~vlE~Ir~gLE~n~~~~------nQ---rRia~vkyLgELY 112 (248)
T 1uw4_B 57 IHCVANLLAGLVLYQEDVGIHVVDGVLEDIRLGMEVNQPKF------NQ---RRISSAKFLGELY 112 (248)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHCCGGG------HH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhChHHhhhhHHHHHHHHHHHHhcCcHHH------HH---HHHHHHHHHHHHH
Confidence 3568899999999999999999999998 46999999988 22 2345668887753
No 54
>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12
Probab=25.87 E-value=35 Score=23.81 Aligned_cols=26 Identities=8% Similarity=0.142 Sum_probs=22.6
Q ss_pred eeeHHHHHHHHHHhCcccCCCCcccc
Q 032126 109 ILTMEDLSKALREYGVNVKHQEYFAD 134 (147)
Q Consensus 109 vLTmEDLs~AL~EyGInvkrP~Yy~d 134 (147)
.|+-+++..+|.+++.-|+||=-..+
T Consensus 73 ~ls~~~~~~~m~~~p~LikRPiv~~~ 98 (120)
T 3l78_A 73 ELSVSELINLISKNPSLLRRPIIMDN 98 (120)
T ss_dssp GCCHHHHHHHHHHCGGGBCSCEEECS
T ss_pred cCCHHHHHHHHHhCccceeccEEEEC
Confidence 57999999999999999999966544
No 55
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=25.68 E-value=35 Score=23.98 Aligned_cols=35 Identities=17% Similarity=0.302 Sum_probs=26.7
Q ss_pred eeeHHHHHHHHHHhCcccCCCCccccCC--CCCCCCC
Q 032126 109 ILTMEDLSKALREYGVNVKHQEYFADNP--STGMDPA 143 (147)
Q Consensus 109 vLTmEDLs~AL~EyGInvkrP~Yy~d~~--~~~~~~~ 143 (147)
.|+-+++..+|.+++.=|+||=-..+.- .-|-++.
T Consensus 78 ~ls~~~~~~lm~~~p~LikRPIv~~~~~~~~vGf~~~ 114 (120)
T 3fz4_A 78 QLSLDEAANLLASDGMLIKRPLLVKEGKIVQIGYRTA 114 (120)
T ss_dssp GCCHHHHHHHHHHCGGGBCSCEEEETTEEEEESSSSC
T ss_pred cCCHHHHHHHHHhChheEeccEEEECCEEEEEcCCHH
Confidence 6899999999999999999996655432 2454443
No 56
>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12
Probab=25.63 E-value=36 Score=23.34 Aligned_cols=26 Identities=8% Similarity=-0.130 Sum_probs=22.6
Q ss_pred eeeHHHHHHHHHHhCcccCCCCcccc
Q 032126 109 ILTMEDLSKALREYGVNVKHQEYFAD 134 (147)
Q Consensus 109 vLTmEDLs~AL~EyGInvkrP~Yy~d 134 (147)
.|+-+++..+|.+++.-++||=-..+
T Consensus 72 ~~~~~~~~~~l~~~p~likrPiv~~~ 97 (114)
T 1rw1_A 72 DLDEAKAIELMLAQPSMIKRPVLELG 97 (114)
T ss_dssp TCCHHHHHHHHHHCGGGBCSCEEECS
T ss_pred cCCHHHHHHHHHhChhheeCcEEEEC
Confidence 58999999999999999999965443
No 57
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=25.55 E-value=39 Score=21.77 Aligned_cols=18 Identities=17% Similarity=0.314 Sum_probs=16.7
Q ss_pred eeeHHHHHHHHHHhCccc
Q 032126 109 ILTMEDLSKALREYGVNV 126 (147)
Q Consensus 109 vLTmEDLs~AL~EyGInv 126 (147)
.||+.+|...|+.+|+.+
T Consensus 12 klkV~eLK~~L~~rGL~~ 29 (55)
T 2do1_A 12 KLKLAELKQECLARGLET 29 (55)
T ss_dssp TSCHHHHHHHHHHHTCCC
T ss_pred HCcHHHHHHHHHHcCCCC
Confidence 689999999999999987
No 58
>1o6b_A Phosphopantetheine adenylyltransferase; structural genomics; HET: ADP; 2.20A {Bacillus subtilis} SCOP: c.26.1.3
Probab=24.83 E-value=60 Score=23.21 Aligned_cols=38 Identities=11% Similarity=-0.064 Sum_probs=30.4
Q ss_pred CCCchHHHHHHHHcCCCCCCCcHHHHHHHHHhCCCCCC
Q 032126 15 HDDDAALTEFLSSLMGYTPTIPDELVEHYLAKSGFQCP 52 (147)
Q Consensus 15 ~~~d~~L~efl~~LddY~P~IPD~Vt~yyL~~aGf~~~ 52 (147)
.-+...+++.+..=.+....+|++|.+|+.++..+..+
T Consensus 126 ~ISST~IR~~l~~G~~~~~~vP~~V~~yi~~~~ly~~~ 163 (169)
T 1o6b_A 126 FLSSSIVKEVARYDGSVSEFVPPEVELALQQKFRQGGS 163 (169)
T ss_dssp TCCHHHHHHHHHTTCCCTTTSCHHHHHHHHHHHHSCSC
T ss_pred cCcHHHHHHHHHcCCChhHHCCHHHHHHHHHhhCcCCC
Confidence 45678899999876778889999999999887666543
No 59
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=24.78 E-value=68 Score=20.45 Aligned_cols=17 Identities=29% Similarity=0.378 Sum_probs=14.5
Q ss_pred ceeeeHHHHHHHHHHhC
Q 032126 107 RLILTMEDLSKALREYG 123 (147)
Q Consensus 107 r~vLTmEDLs~AL~EyG 123 (147)
+..+|++|+..||.+.-
T Consensus 56 ~~~i~~~df~~Al~~~~ 72 (83)
T 3aji_B 56 RYIVLAKDFEKAYKTVI 72 (83)
T ss_dssp CSSBCHHHHHHHHHHHC
T ss_pred cCCcCHHHHHHHHHHHc
Confidence 46799999999999864
No 60
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=24.07 E-value=44 Score=21.13 Aligned_cols=19 Identities=21% Similarity=0.429 Sum_probs=17.1
Q ss_pred eeeeHHHHHHHHHHhCccc
Q 032126 108 LILTMEDLSKALREYGVNV 126 (147)
Q Consensus 108 ~vLTmEDLs~AL~EyGInv 126 (147)
..||+.||-..|+.+|+.+
T Consensus 11 ~klkV~eLK~eLk~RgL~~ 29 (50)
T 1zrj_A 11 RRLKVNELREELQRRGLDT 29 (50)
T ss_dssp GGSCHHHHHHHHHHTTCCC
T ss_pred HHCcHHHHHHHHHHcCCCC
Confidence 4689999999999999976
No 61
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=23.71 E-value=1.6e+02 Score=23.57 Aligned_cols=17 Identities=29% Similarity=0.345 Sum_probs=14.2
Q ss_pred ceeeeHHHHHHHHHHhC
Q 032126 107 RLILTMEDLSKALREYG 123 (147)
Q Consensus 107 r~vLTmEDLs~AL~EyG 123 (147)
...+|++|+..||++.-
T Consensus 316 ~~~v~~~df~~Al~~~~ 332 (355)
T 2qp9_X 316 EPDLTIKDFLKAIKSTR 332 (355)
T ss_dssp CCCBCHHHHHHHHHHSC
T ss_pred cCCccHHHHHHHHHHcC
Confidence 35699999999999854
No 62
>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}
Probab=23.56 E-value=42 Score=23.21 Aligned_cols=25 Identities=8% Similarity=-0.102 Sum_probs=22.1
Q ss_pred eeeHHHHHHHHHHhCcccCCCCccc
Q 032126 109 ILTMEDLSKALREYGVNVKHQEYFA 133 (147)
Q Consensus 109 vLTmEDLs~AL~EyGInvkrP~Yy~ 133 (147)
.|+-+++..+|.+++.-++||=-..
T Consensus 77 ~~~~~~~~~~l~~~p~likrPiv~~ 101 (120)
T 2kok_A 77 NVDAASARELMLAQPSMVKRPVLER 101 (120)
T ss_dssp SCCHHHHHHHHHHCGGGBCSSEEEE
T ss_pred cCCHHHHHHHHHhCcccEECCEEEE
Confidence 6899999999999999999996544
No 63
>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.40 E-value=65 Score=21.39 Aligned_cols=33 Identities=24% Similarity=0.427 Sum_probs=28.3
Q ss_pred CCchHHHHHHHHcCCCCCCCcHHHHHHHHHhCC
Q 032126 16 DDDAALTEFLSSLMGYTPTIPDELVEHYLAKSG 48 (147)
Q Consensus 16 ~~d~~L~efl~~LddY~P~IPD~Vt~yyL~~aG 48 (147)
..+..+....+++.+--|-||.+++.+=|++.|
T Consensus 8 ~~~~ql~~mv~~V~~mfP~vp~~~I~~DL~~Tg 40 (61)
T 2ekf_A 8 SPDVQLATLAQRVKEVLPHVPLGVIQRDLAKTG 40 (61)
T ss_dssp CCCCCHHHHHHHHHHHCSSSCHHHHHHHHHTSC
T ss_pred CccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhC
Confidence 345667777888888899999999999999998
No 64
>3m1d_A Baculoviral IAP repeat-containing protein 2; BIR, apoptosis, cytoplasm, polymorphism, zinc, zinc-FIN metal binding protein; 2.00A {Homo sapiens} PDB: 3m0a_D 3m0d_D
Probab=22.09 E-value=31 Score=23.56 Aligned_cols=37 Identities=24% Similarity=0.548 Sum_probs=22.7
Q ss_pred HHHcCCCCCCCcHHHHHHHHHhCCC--CCCCcccccccccc
Q 032126 25 LSSLMGYTPTIPDELVEHYLAKSGF--QCPDVRLNCCLCFC 63 (147)
Q Consensus 25 l~~LddY~P~IPD~Vt~yyL~~aGf--~~~D~Rv~~~~~~~ 63 (147)
|.....|+-..| ++-.-|+++|| ...+-+|.||+|-.
T Consensus 16 l~TF~~WP~~~~--~~~~~LA~AGFyy~g~~D~v~Cf~C~~ 54 (85)
T 3m1d_A 16 MSTYSTFPAGVP--VSERSLARAGFYYTGVNDKVKCFCCGL 54 (85)
T ss_dssp HHGGGGCCTTCS--SCHHHHHHTTEEECSSTTCEEETTTCC
T ss_pred HHHHhcCCCCCc--CCHHHHHHCCCeEeCCCCEEEeCCcCC
Confidence 344455643322 34456999999 44455888888753
No 65
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens}
Probab=22.03 E-value=67 Score=24.19 Aligned_cols=37 Identities=24% Similarity=0.391 Sum_probs=28.8
Q ss_pred chHHHHHHHHcCCCCCCCcHHHHHHHHHhCCCCCCCccc
Q 032126 18 DAALTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRL 56 (147)
Q Consensus 18 d~~L~efl~~LddY~P~IPD~Vt~yyL~~aGf~~~D~Rv 56 (147)
..-|..||..|- .|+||.++.+.+++-......+.|+
T Consensus 93 a~lLK~flreLP--ePLl~~~l~~~~~~~~~~~~~~~~~ 129 (214)
T 3byi_A 93 TGALKMFFRELP--EPLFPYSFFEQFVEAIKKQDNNTRI 129 (214)
T ss_dssp HHHHHHHHHHSS--SCSSCHHHHHHHHHHHTSSSHHHHH
T ss_pred HHHHHHHHHhCC--CCCCCHHHHHHHHHHHhcCCHHHHH
Confidence 456788999997 5999999999999877655444555
No 66
>2g49_C Glucagon preproprotein; protein-peptide complex, hydrolase; 2.50A {Homo sapiens} PDB: 1kx6_A 1gcn_A 1bh0_A 1nau_A
Probab=21.88 E-value=52 Score=18.96 Aligned_cols=16 Identities=25% Similarity=0.192 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 032126 66 RLVAVATQKFVAEVAT 81 (147)
Q Consensus 66 RLvSLAaQKFisDIa~ 81 (147)
=|=.+|||+||.-+.+
T Consensus 13 ~l~~~aak~fv~wL~~ 28 (29)
T 2g49_C 13 YLDSRRAQDFVQWLMN 28 (29)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3567899999987753
No 67
>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A
Probab=21.86 E-value=46 Score=24.14 Aligned_cols=26 Identities=8% Similarity=0.034 Sum_probs=22.8
Q ss_pred eeeHHHHHHHHHHhCcccCCCCcccc
Q 032126 109 ILTMEDLSKALREYGVNVKHQEYFAD 134 (147)
Q Consensus 109 vLTmEDLs~AL~EyGInvkrP~Yy~d 134 (147)
.|+-+++..+|.+++.-|+||=-..+
T Consensus 75 ~ls~~~~~~lm~~~P~LikRPiv~~~ 100 (141)
T 1s3c_A 75 KFTDDQLIDFMLQHPILINRPIVVTP 100 (141)
T ss_dssp CCCHHHHHHHHHHSGGGBCSCEEEET
T ss_pred cCCHHHHHHHHHhCccceEccEEEEC
Confidence 68999999999999999999965443
No 68
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=21.45 E-value=33 Score=21.41 Aligned_cols=16 Identities=6% Similarity=0.482 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhCcccC
Q 032126 112 MEDLSKALREYGVNVK 127 (147)
Q Consensus 112 mEDLs~AL~EyGInvk 127 (147)
+.+++.+|+++|+||.
T Consensus 19 L~~I~~~la~~~inI~ 34 (88)
T 2ko1_A 19 TNQITGVISKFDTNIR 34 (88)
T ss_dssp HHHHHHHHTTSSSCEE
T ss_pred HHHHHHHHHHCCCCeE
Confidence 5789999999999995
No 69
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=21.28 E-value=34 Score=24.06 Aligned_cols=27 Identities=22% Similarity=0.150 Sum_probs=23.2
Q ss_pred eeeeHHHHHHHHHHhCcccCCCCcccc
Q 032126 108 LILTMEDLSKALREYGVNVKHQEYFAD 134 (147)
Q Consensus 108 ~vLTmEDLs~AL~EyGInvkrP~Yy~d 134 (147)
-.|+-+++..+|.+++.=|+||=-..+
T Consensus 78 ~~ls~~~~~~lm~~~p~LikRPiv~~~ 104 (120)
T 3gkx_A 78 PTMTEEEQIALLATNGKLVKRPLVVTE 104 (120)
T ss_dssp GGSCHHHHHHHHTTCGGGBCSCEEECS
T ss_pred ccCCHHHHHHHHHhChhheECcEEEEC
Confidence 468999999999999999999965543
No 70
>3lap_A Arginine repressor; arginine repressor, DNA binding, DNA-canavanine ternary complex; HET: GGB; 2.15A {Mycobacterium tuberculosis} PDB: 3fhz_A* 3ere_D* 3laj_A*
Probab=21.20 E-value=45 Score=25.68 Aligned_cols=21 Identities=19% Similarity=0.336 Sum_probs=17.0
Q ss_pred ceeeeHHHHHHHHHHhCcccC
Q 032126 107 RLILTMEDLSKALREYGVNVK 127 (147)
Q Consensus 107 r~vLTmEDLs~AL~EyGInvk 127 (147)
.-+=|-|+|..+|++.||+|.
T Consensus 32 ~~I~tQeEL~~~L~~~Gi~vT 52 (170)
T 3lap_A 32 AQVRSQNELAALLAAEGIEVT 52 (170)
T ss_dssp SCCCSHHHHHHHHHHTTCCCC
T ss_pred CCCCCHHHHHHHHHHcCCCcC
Confidence 346688999999999999874
No 71
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.98 E-value=54 Score=21.84 Aligned_cols=39 Identities=10% Similarity=0.209 Sum_probs=26.9
Q ss_pred CchHHHHHHHHcCCCCCCCcHHHHHHHHHhCCCCCCCccc
Q 032126 17 DDAALTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRL 56 (147)
Q Consensus 17 ~d~~L~efl~~LddY~P~IPD~Vt~yyL~~aGf~~~D~Rv 56 (147)
...++.+-+..|.+-=|.|-.+|+++-|.++|=+. |.-|
T Consensus 14 ~~~~~~~~v~~L~~MFP~lD~~vI~~vL~a~~G~v-d~aI 52 (67)
T 2dhy_A 14 RRLEFNQAMDDFKTMFPNMDYDIIECVLRANSGAV-DATI 52 (67)
T ss_dssp CCCCSHHHHHHHHHHCSSSCHHHHHHHHHHHTSCH-HHHH
T ss_pred cCCCHHHHHHHHHHHCCCCCHHHHHHHHHHcCCCH-HHHH
Confidence 34444555555555589999999999999988542 3445
No 72
>2k6x_A Sigma-A, RNA polymerase sigma factor RPOD; DNA-binding, transcription, transcription regulation; NMR {Thermotoga maritima}
Probab=20.89 E-value=1e+02 Score=19.90 Aligned_cols=16 Identities=25% Similarity=0.590 Sum_probs=14.1
Q ss_pred eHHHHHHHHHHhCccc
Q 032126 111 TMEDLSKALREYGVNV 126 (147)
Q Consensus 111 TmEDLs~AL~EyGInv 126 (147)
.+|++...|.+.||.|
T Consensus 44 ~id~i~~~L~~~gI~V 59 (72)
T 2k6x_A 44 LIERIHEELEKHGINI 59 (72)
T ss_dssp HHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHCCCcc
Confidence 5788889999999998
No 73
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.61 E-value=78 Score=20.72 Aligned_cols=33 Identities=18% Similarity=0.283 Sum_probs=29.1
Q ss_pred CCchHHHHHHHHcCCCCCCCcHHHHHHHHHhCC
Q 032126 16 DDDAALTEFLSSLMGYTPTIPDELVEHYLAKSG 48 (147)
Q Consensus 16 ~~d~~L~efl~~LddY~P~IPD~Vt~yyL~~aG 48 (147)
..+..+....+++.+--|-||.+++.+=|++.|
T Consensus 8 ~~~~q~~~mv~~V~~mfP~vp~~~I~~DL~~Tg 40 (58)
T 2ejs_A 8 ASNSQLNAMAHQIQEMFPQVPYHLVLQDLQLTR 40 (58)
T ss_dssp CCCCHHHHHHHHHHHHCCSSCHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHhC
Confidence 356778888888888999999999999999998
No 74
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}
Probab=20.47 E-value=44 Score=23.11 Aligned_cols=16 Identities=38% Similarity=0.486 Sum_probs=15.1
Q ss_pred eeeHHHHHHHHHHhCc
Q 032126 109 ILTMEDLSKALREYGV 124 (147)
Q Consensus 109 vLTmEDLs~AL~EyGI 124 (147)
.+|.++|...|.++||
T Consensus 99 ~~~~~~le~~L~~~g~ 114 (118)
T 3evi_A 99 NLKLEELEWKLAEVGA 114 (118)
T ss_dssp SCCHHHHHHHHHTTTS
T ss_pred CCCHHHHHHHHHHcCC
Confidence 6899999999999998
Done!