BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032127
(147 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O80634|PPL2_ARATH PsbP-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=PPL2
PE=1 SV=2
Length = 238
Score = 152 bits (383), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 79/150 (52%), Positives = 94/150 (62%), Gaps = 3/150 (2%)
Query: 1 MAVSSLSL--NWVSTTLSKKLNVAYPNELTRSATAFSCQNFFTCPEDI-SSDEENKSKRR 57
MAVSSLS+ S T+S K + PN ++ S E N KRR
Sbjct: 1 MAVSSLSIRCGGFSPTISHKTEILCPNPSLKACCLLSSGGKADSSESTYQKGSGNNWKRR 60
Query: 58 LLLMGAGLLTANLLPANSLFAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEFTGHDSGFKD 117
L+G G L A +PA L A+EIPK+Y FVDR DGYSY YPSDW EF+F HDS FKD
Sbjct: 61 QALVGVGTLVATSIPATLLLAEEIPKSYSPFVDREDGYSYYYPSDWREFDFRAHDSAFKD 120
Query: 118 RYLQLQNVRVRFIPTDKKDVHDLGPMEEFL 147
RYLQLQNVRVRFIPT+K D+H++GPMEE +
Sbjct: 121 RYLQLQNVRVRFIPTEKNDIHEVGPMEEVV 150
>sp|P82538|PPL1_ARATH PsbP-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPL1
PE=1 SV=1
Length = 230
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 2/98 (2%)
Query: 51 ENKSKRRLLL-MGAGLLTANLLPANSL-FAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEF 108
++K +RRL++ G +LL L FA E K + A D D Y+++YP W E
Sbjct: 45 QDKCQRRLIVTFGVVAPWISLLSRAPLSFAAESKKGFLAVSDNKDAYAFLYPFGWQEVVI 104
Query: 109 TGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEF 146
G D +KD L++V V +PT K+ + + GP ++
Sbjct: 105 EGQDKVYKDVIEPLESVSVNLVPTSKQTIKEFGPPKQI 142
>sp|P11594|PSBP_SINAL Oxygen-evolving enhancer protein 2, chloroplastic OS=Sinapis alba
GN=PSBP PE=2 SV=2
Length = 260
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 13/121 (10%)
Query: 40 FTCPEDISSDEENKS-KRRL---LLMGAGLLTANLLPANSLFAQEI------PKNYDAFV 89
C + +E+N + RRL LL+GA + + + PA++ + + KN D
Sbjct: 35 LVCKAQQTHEEDNSTVSRRLALTLLVGAAAVGSKVSPADAAYGEAANVFGKPKKNTDFTA 94
Query: 90 DRIDGYSYVYPSDWT---EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEF 146
DG+ P+ W E E+ G ++D + N+ V PTDKK + D G EEF
Sbjct: 95 YSGDGFQVQVPAKWNPSREVEYPGQVLRYEDNFDATSNLNVMVTPTDKKSITDYGSPEEF 154
Query: 147 L 147
L
Sbjct: 155 L 155
>sp|Q42029|PSBP1_ARATH Oxygen-evolving enhancer protein 2-1, chloroplastic OS=Arabidopsis
thaliana GN=PSBP1 PE=1 SV=2
Length = 263
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 13/119 (10%)
Query: 42 CPEDISSDEENKS-KRRL---LLMGAGLLTANLLPANSLFAQEI-----PK-NYDAFVDR 91
C S +++N + RRL LL+GA + + + PA++ + + PK N D
Sbjct: 40 CKAQQSHEDDNSAVSRRLALTLLVGAAAVGSKVSPADAAYGEAANVFGKPKTNTDFLPYN 99
Query: 92 IDGYSYVYPSDWT---EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEFL 147
DG+ P+ W E E+ G F+D + N+ V PTDKK + D G EEFL
Sbjct: 100 GDGFKVQVPAKWNPSKEIEYPGQVLRFEDNFDATSNLNVMVTPTDKKSITDYGSPEEFL 158
>sp|O49080|PSBP_FRIAG Oxygen-evolving enhancer protein 2, chloroplastic OS=Fritillaria
agrestis GN=PSBP PE=2 SV=1
Length = 264
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 16/122 (13%)
Query: 42 CPEDISSD-EENKS---KRRL---LLMGAGLLTANLLPANSLFAQ------EIPKNYDAF 88
C SSD +EN S RRL +L+G+ + + PAN+ + + + N D
Sbjct: 38 CRAQKSSDTDENSSTAVSRRLALTILIGSAAVGTKIAPANAAYGEAANVFGKAKTNTDFL 97
Query: 89 VDRIDGYSYVYPSDWT---EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEE 145
DG++ + P+ W E EF G ++D + NV V PT KK + D G EE
Sbjct: 98 PYTGDGFNLLIPAKWNPSKEVEFPGQVLRYEDNFDVTSNVSVTVTPTSKKSITDYGTPEE 157
Query: 146 FL 147
FL
Sbjct: 158 FL 159
>sp|P93566|PSBP_SOLTU Oxygen-evolving enhancer protein 2, chloroplastic OS=Solanum
tuberosum GN=PSBP PE=2 SV=1
Length = 260
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 12/116 (10%)
Query: 44 EDISSDEENKSKRRL---LLMGAGLLTANLLPANSLFAQEI-----PK-NYDAFVDRIDG 94
+D +++ N RRL LL+G + + + PA++ + + PK N D DG
Sbjct: 40 QDDANNTSNAVSRRLALTLLIGTAAIGSKVSPADAAYGEAANVFGKPKENTDFLPYNGDG 99
Query: 95 YSYVYPSDWT---EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEFL 147
+ P+ W E EF G ++D + N+ V PTDKK + D G EEFL
Sbjct: 100 FKLQIPAKWNPSKEIEFPGQVLRYEDNFDSTSNLMVAVTPTDKKSITDYGSPEEFL 155
>sp|Q96334|PSBP_BRAJU Oxygen-evolving enhancer protein 2, chloroplastic (Fragment)
OS=Brassica juncea GN=PSBP PE=2 SV=1
Length = 217
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 53/111 (47%), Gaps = 12/111 (10%)
Query: 49 DEENKSKRRL---LLMGAGLLTANLLPANSLFAQEI-----PK-NYDAFVDRIDGYSYVY 99
D+ + RRL LL+GA + + + PA++ + + PK N D DG+
Sbjct: 2 DDTSTVSRRLALTLLVGAAAVGSKVSPADAAYGEAANVFGKPKTNTDFTAINGDGFQVQV 61
Query: 100 PSDWT---EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEFL 147
P+ W E E+ G ++D + N+ V PTDKK + D G EEFL
Sbjct: 62 PAKWNPSREVEYPGQVLRYEDNFDATSNLNVMVTPTDKKSITDYGSPEEFL 112
>sp|Q7DM39|PSBP1_TOBAC Oxygen-evolving enhancer protein 2-1, chloroplastic OS=Nicotiana
tabacum GN=PSBP1 PE=3 SV=2
Length = 268
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 12/104 (11%)
Query: 56 RRL---LLMGAGLLTANLLPANSLFAQEI-----PK-NYDAFVDRIDGYSYVYPSDWT-- 104
RRL +L+GA + + + PA++ + + PK N D DG+ P+ W
Sbjct: 60 RRLALTVLIGAAAIGSKVSPADAAYGEAANVFGKPKENTDFLAYNGDGFKLQVPAKWNPS 119
Query: 105 -EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEFL 147
E EF G ++D + N+ V PTDKK + D G EEFL
Sbjct: 120 KEVEFPGQVLRYEDNFDSTSNLIVTVTPTDKKSITDYGSPEEFL 163
>sp|Q04127|PSBP3_TOBAC Oxygen-evolving enhancer protein 2-3, chloroplastic OS=Nicotiana
tabacum GN=PSBP3 PE=2 SV=1
Length = 266
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 57/123 (46%), Gaps = 11/123 (8%)
Query: 36 CQNFFTCPEDISSDEENKSKRRLL--LMGAGLLTANLLPANSLFAQEI-----PKNYDAF 88
QN + P+ + + + S+R L L+GA + + + PA++ + + PK F
Sbjct: 39 AQNKQSAPQQDNVNSVSVSRRLALTLLIGAAAVGSKVSPADAAYGEAANVFGKPKTDTDF 98
Query: 89 VD-RIDGYSYVYPSDWT---EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPME 144
DG+ PS W E E+ G F+D + NV V PTDKK + D G E
Sbjct: 99 QTYNGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPE 158
Query: 145 EFL 147
+FL
Sbjct: 159 QFL 161
>sp|Q9SLQ8|PSBP_CUCSA Oxygen-evolving enhancer protein 2, chloroplastic OS=Cucumis
sativus GN=PSBP PE=2 SV=1
Length = 263
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 50/104 (48%), Gaps = 12/104 (11%)
Query: 56 RRL---LLMGAGLLTANLLPANSLFAQEI-----PK-NYDAFVDRIDGYSYVYPSDWT-- 104
RRL +L+GA L + + PA++ + + PK N D DG+ PS W
Sbjct: 55 RRLALTVLIGAAALGSKVSPADAAYGEAANVFGKPKSNTDYLPYSGDGFKLSIPSKWNPS 114
Query: 105 -EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEFL 147
E EF G ++D + N+ V PTDKK + D G EEFL
Sbjct: 115 KEREFPGQVLRYEDNFDSNSNLSVIINPTDKKSIKDFGSPEEFL 158
>sp|P18212|PSBP2_TOBAC Oxygen-evolving enhancer protein 2-2, chloroplastic OS=Nicotiana
tabacum GN=PSBP2 PE=1 SV=2
Length = 265
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 12/104 (11%)
Query: 56 RRL---LLMGAGLLTANLLPANSLFAQEI-----PKNYDAFVD-RIDGYSYVYPSDWT-- 104
RRL +L+GA + + + PA++ + + PK F DG+ PS W
Sbjct: 57 RRLALTVLIGAAAVGSKVSPADAAYGEAANVFGKPKTDTDFQTYNGDGFKLQIPSKWNPN 116
Query: 105 -EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEFL 147
E E+ G F+D + NV V PTDKK + D G E+FL
Sbjct: 117 KEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFL 160
>sp|P29795|PSBP_SOLLC Oxygen-evolving enhancer protein 2, chloroplastic OS=Solanum
lycopersicum GN=PSBP PE=2 SV=1
Length = 258
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 54/123 (43%), Gaps = 13/123 (10%)
Query: 38 NFFTCPEDISSDEENKS-KRRL---LLMGAGLLTANLLPANSLFAQEI-----PK-NYDA 87
N C D N + RRL LL+G + + + PA++ + + PK N D
Sbjct: 31 NQLICRAQKQDDASNAAVSRRLALTLLIGTAAIGSKVSPADAAYGEAANVFGKPKENTDF 90
Query: 88 FVDRIDGYSYVYPSDWT---EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPME 144
DG+ P+ W E E+ G ++D + N+ V PTDKK + D G E
Sbjct: 91 LPYNGDGFKLQVPAKWNPSKEVEYPGQVLRYEDNFDSTSNLIVAVTPTDKKSITDYGSPE 150
Query: 145 EFL 147
EFL
Sbjct: 151 EFL 153
>sp|P12302|PSBP_SPIOL Oxygen-evolving enhancer protein 2, chloroplastic OS=Spinacia
oleracea GN=PSBP PE=1 SV=1
Length = 267
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 12/104 (11%)
Query: 56 RRL---LLMGAGLLTANLLPANSLFAQEI-----PKNYDAFVD-RIDGYSYVYPSDWT-- 104
RRL +L+GA + + + PA++ + + PK F+ DG+ + PS W
Sbjct: 59 RRLALTVLIGAAAVGSKVSPADAAYGEAANVFGKPKKNTEFMPYNGDGFKLLVPSKWNPS 118
Query: 105 -EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEFL 147
E EF G ++D + N+ V PTDKK + D G E+FL
Sbjct: 119 KEKEFPGQVLRYEDNFDATSNLSVLVQPTDKKSITDFGSPEDFL 162
>sp|Q40407|PSBP_NARPS Oxygen-evolving enhancer protein 2, chloroplastic OS=Narcissus
pseudonarcissus GN=PSBP PE=2 SV=1
Length = 265
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 62/138 (44%), Gaps = 18/138 (13%)
Query: 28 TRSATAFSCQN-----FFTCPE-DISSDEENKSKRRL---LLMGAGLLTANLLPANSLFA 78
TRSAT Q PE D +++ + RRL +L+G L + + A++ +
Sbjct: 23 TRSATNRDEQQQEHSARLQSPEADCATENDALLSRRLALTILIGGAALGSRVSAADAAYG 82
Query: 79 QEI-----PK-NYDAFVDRIDGYSYVYPSDWT---EFEFTGHDSGFKDRYLQLQNVRVRF 129
+ PK N D DG+ + PS W E EF G ++D + NV V
Sbjct: 83 ESANVFGKPKTNTDFQTVTGDGFKILIPSKWNPSKEVEFPGQVLRYEDNFDTTSNVGVMV 142
Query: 130 IPTDKKDVHDLGPMEEFL 147
PTDKK + D G E+FL
Sbjct: 143 NPTDKKSIKDYGSPEQFL 160
>sp|P16059|PSBP_PEA Oxygen-evolving enhancer protein 2, chloroplastic OS=Pisum sativum
GN=PSBP PE=1 SV=1
Length = 259
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 12/104 (11%)
Query: 56 RRL---LLMGAGLLTANLLPANSLFAQ------EIPKNYDAFVDRIDGYSYVYPSDWT-- 104
RRL +L+GA + + + PA++ + + + N D DG+ + P+ W
Sbjct: 51 RRLALSVLIGAAAVGSKVSPADAAYGEAANVFGKAKTNTDYLPYNGDGFKLLVPAKWNPS 110
Query: 105 -EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEFL 147
E EF G ++D + NV V TDKK + D G EEFL
Sbjct: 111 KEREFPGQVLRYEDNFDATSNVSVLVQTTDKKSITDYGSPEEFL 154
>sp|P85189|PSBP_HELAN Oxygen-evolving enhancer protein 2, chloroplastic OS=Helianthus
annuus GN=PSBP PE=1 SV=1
Length = 263
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 14/116 (12%)
Query: 44 EDISSDEENKSKRRLL--LMGAGLLTANLLPANS-------LFAQEIPKNYDAFVDRIDG 94
E+ ++++ S+R L L+GA + + PA++ +F ++ + + G
Sbjct: 45 EETATNDAAISRRLALTVLIGAAAVGTKVSPADAAYGEAANVFGKQKSTEFSQYTG--PG 102
Query: 95 YSYVYPSDWT---EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEFL 147
+ P+ W E E+ G ++D + N+ V PTDKK + D G EEFL
Sbjct: 103 FKLSVPAKWNPSKEVEYPGQVLRYEDNFDTTSNLAVMVTPTDKKAITDYGAPEEFL 158
>sp|O23403|PPD1_ARATH PsbP domain-containing protein 1, chloroplastic OS=Arabidopsis
thaliana GN=PPD1 PE=1 SV=1
Length = 287
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 55 KRRLLLMGAGLLTANLL--PANSLFAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEFTGHD 112
+R+ ++MG LL + L+ AN A + ++D DGYS+ YP +W + G D
Sbjct: 79 RRKSMMMG--LLMSGLIVSQANLPTAFASTPVFREYIDTFDGYSFKYPQNWIQVRGAGAD 136
Query: 113 SGFKDRYLQLQNVRVRFIPTDKKD---VHDLGPMEE 145
F+D + +N+ V F + + DLG EE
Sbjct: 137 IFFRDPVVLDENLSVEFSSPSSSNYTSLEDLGSPEE 172
>sp|Q00434|PSBP_WHEAT Oxygen-evolving enhancer protein 2, chloroplastic OS=Triticum
aestivum GN=PSBP PE=2 SV=1
Length = 258
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 83 KNYDAFVDRIDGYSYVYPSDWT---EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHD 139
KN D +G+ + P+ W E EF G ++D + N+ V PT KK + D
Sbjct: 87 KNTDFVAYSGEGFKLMIPAKWNPSKEREFPGQVLRYEDNFDATSNLSVIINPTTKKTITD 146
Query: 140 LGPMEEFL 147
G EEFL
Sbjct: 147 YGSPEEFL 154
>sp|Q2A1K3|ACON_FRATH Aconitate hydratase OS=Francisella tularensis subsp. holarctica
(strain LVS) GN=acn PE=3 SV=1
Length = 937
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 12/111 (10%)
Query: 26 ELTRSATAFSCQNFFTCPEDISSDEENKSKRRLLLMGAGLLTANLLPANSLFAQEIPKNY 85
E S+T C NFF + + D + K R LL++G + T ++ PA + IP+ Y
Sbjct: 637 EFDSSSTYIQCPNFFEKFAEGNDDLDIKGARTLLMLGDSVTTDHISPAGA-----IPEEY 691
Query: 86 DA-------FVDRIDGYSYVYPSDWTEFEFTGHDSGFKDRYLQLQNVRVRF 129
A V++ D SY E G + + R L L NV F
Sbjct: 692 PAGQYLKSHGVEKKDFNSYGSRRGNHEVMMRGTFANIRIRNLLLDNVEGGF 742
>sp|P11471|PSBP_CHLRE Oxygen-evolving enhancer protein 2, chloroplastic OS=Chlamydomonas
reinhardtii GN=PSBP PE=2 SV=1
Length = 245
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 93 DGYSYVYPSDWT---EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEFL 147
DG++ + P+ W E +F G ++D + + N+ V TDKK + D G ++FL
Sbjct: 81 DGFALLLPAKWNPSKENDFPGVILRYEDNFDAVNNLVVIAQDTDKKAIADFGSQDKFL 138
>sp|Q9UG01|IF172_HUMAN Intraflagellar transport protein 172 homolog OS=Homo sapiens
GN=IFT172 PE=1 SV=2
Length = 1749
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 87 AFVDRIDGY-----SYVYPSDWTEFEFTGHDSGFKDRYLQLQ 123
A VD I GY S+ DW E TGH F+DR L+L
Sbjct: 469 AIVDLIGGYNIGTVSHESRVDWLELNETGHKLLFRDRKLRLH 510
>sp|Q9JKU3|IF172_RAT Intraflagellar transport protein 172 homolog OS=Rattus norvegicus
GN=Ift172 PE=1 SV=1
Length = 1749
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 87 AFVDRIDGY-----SYVYPSDWTEFEFTGHDSGFKDRYLQLQ 123
A VD I GY S+ DW E TGH F+DR L+L
Sbjct: 469 AIVDLIGGYNIGTISHESRVDWLELNETGHKLLFRDRKLRLH 510
>sp|Q6VH22|IF172_MOUSE Intraflagellar transport protein 172 homolog OS=Mus musculus
GN=Ift172 PE=1 SV=1
Length = 1749
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 87 AFVDRIDGY-----SYVYPSDWTEFEFTGHDSGFKDRYLQLQ 123
A VD I GY S+ DW E TGH F+DR L+L
Sbjct: 469 AIVDLIGGYNIGTISHESRVDWLELNETGHKLLFRDRKLRLH 510
>sp|Q8BG19|TMTC4_MOUSE Transmembrane and TPR repeat-containing protein 4 OS=Mus musculus
GN=Tmtc4 PE=2 SV=1
Length = 741
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 51 ENKSKRRLLLMGAGLLTANLLPANSLF 77
E+ KRR+L +G G L LPA++LF
Sbjct: 376 EDSCKRRILTLGLGFLVIPFLPASNLF 402
>sp|A9A0F0|KATG_DESOH Catalase-peroxidase OS=Desulfococcus oleovorans (strain DSM 6200 /
Hxd3) GN=katG PE=3 SV=1
Length = 732
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 39/99 (39%), Gaps = 10/99 (10%)
Query: 23 YPNELTRS-ATAFSCQNFFTCPEDISSDEENKSKRRLLLMGAGLLTANLLPANSLFAQEI 81
Y EL +S A A+ ED+ D + SK+ +M L+ P A+
Sbjct: 330 YEWELVKSPAGAYQWLAMDVDEEDMVIDAHDPSKKHRPMMTTADLSLRFDPVLGPIAKRF 389
Query: 82 PKNYDAFVDRIDGYSYVYPSDWTEFEFTGHDSGFKDRYL 120
KN AF D + W F+ T D G + RYL
Sbjct: 390 SKNPKAFAD-------AFARAW--FKLTHRDMGPRSRYL 419
>sp|P34303|YKQ8_CAEEL Putative zinc finger protein C06E1.8 OS=Caenorhabditis elegans
GN=C06E1.8 PE=4 SV=1
Length = 397
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 111 HDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEFL 147
H+ F+ + L+ QN+ V+F+ DK HD M FL
Sbjct: 350 HNELFQRKLLECQNLAVKFLQNDK--AHDASEMNSFL 384
>sp|Q5T4D3|TMTC4_HUMAN Transmembrane and TPR repeat-containing protein 4 OS=Homo sapiens
GN=TMTC4 PE=2 SV=2
Length = 741
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 51 ENKSKRRLLLMGAGLLTANLLPANSLF 77
E+ KRR+L +G G L LPA++LF
Sbjct: 376 EDGHKRRILTLGLGFLVIPFLPASNLF 402
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,691,364
Number of Sequences: 539616
Number of extensions: 2125982
Number of successful extensions: 4370
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 4347
Number of HSP's gapped (non-prelim): 37
length of query: 147
length of database: 191,569,459
effective HSP length: 106
effective length of query: 41
effective length of database: 134,370,163
effective search space: 5509176683
effective search space used: 5509176683
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)