Query 032127
Match_columns 147
No_of_seqs 137 out of 187
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 16:03:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032127.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032127hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lnj_A SLL1418 protein, putati 99.6 1.3E-20 4.5E-25 145.8 0.0 69 79-147 8-81 (170)
2 1v2b_A 23-kDa polypeptide of p 99.8 7.1E-20 2.4E-24 143.9 2.2 64 81-146 5-71 (177)
3 2xb3_A PSBP protein; photosynt 99.7 3.4E-19 1.2E-23 136.2 3.7 68 80-147 3-72 (165)
4 3hlz_A Uncharacterized protein 82.2 1.2 4.3E-05 36.8 4.0 45 86-130 5-49 (269)
5 1tu1_A Hypothetical protein PA 44.0 22 0.00077 25.7 3.7 14 92-105 8-21 (148)
6 2l5f_A PRE-mRNA-processing fac 29.3 59 0.002 21.9 3.7 36 81-117 12-71 (92)
7 3rq0_A Glycosyl hydrolases fam 25.1 46 0.0016 27.0 2.9 51 55-105 8-62 (269)
8 2pq4_B Periplasmic nitrate red 23.4 34 0.0012 19.7 1.3 12 54-65 3-14 (35)
9 1jmq_A YAP65, 65 kDa YES-assoc 22.8 28 0.00095 20.5 0.9 23 99-121 9-31 (46)
10 4aay_B AROB; oxidoreductase, r 22.0 19 0.00065 27.4 0.0 13 53-65 9-21 (175)
No 1
>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP}
Probab=99.65 E-value=1.3e-20 Score=145.76 Aligned_cols=69 Identities=25% Similarity=0.437 Sum_probs=64.9
Q ss_pred ccccCCcccceeCCCCeEEeccCCceEeeec----CCcceecCcccCccceEEEEecCCC-CCcccCCCccccC
Q 032127 79 QEIPKNYDAFVDRIDGYSYVYPSDWTEFEFT----GHDSGFKDRYLQLQNVRVRFIPTDK-KDVHDLGPMEEFL 147 (147)
Q Consensus 79 e~~p~g~~~f~d~~dGysflyPs~W~ev~~~----G~d~~f~D~~~~~eNVsV~Vsp~~~-~sI~dfGsPeeva 147 (147)
.+.|+||+.|.|..|||+|+||++|++++++ |++++|+|+++.++||+|+|+|+++ ++|+|||+||||+
T Consensus 8 ~~~~~g~~~y~d~~~gy~f~~P~gW~~~~~~~~~~g~~v~f~d~~~~~~nvsV~v~p~~~~~si~d~G~pe~va 81 (170)
T 2lnj_A 8 GVGIASLQRYSDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIPSDKTLTDLGTATDVG 81 (170)
Confidence 3468899999999999999999999999888 9999999999999999999999986 9999999999985
No 2
>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2
Probab=99.77 E-value=7.1e-20 Score=143.88 Aligned_cols=64 Identities=34% Similarity=0.671 Sum_probs=58.0
Q ss_pred ccCCcccceeCCCCeEEeccCCce---EeeecCCcceecCcccCccceEEEEecCCCCCcccCCCcccc
Q 032127 81 IPKNYDAFVDRIDGYSYVYPSDWT---EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEF 146 (147)
Q Consensus 81 ~p~g~~~f~d~~dGysflyPs~W~---ev~~~G~d~~f~D~~~~~eNVsV~Vsp~~~~sI~dfGsPeev 146 (147)
.++||+.|. +|||+|+||++|+ +++++|++++|+|+++.++||+|+|+|+++++|+|||+|+||
T Consensus 5 ~~~g~~~y~--~~gysf~yP~~W~~~~~~~~~G~~~~f~d~~~~~~nvsV~v~p~~~~si~dlGspe~~ 71 (177)
T 1v2b_A 5 TDTDFQTYN--GDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQF 71 (177)
T ss_dssp --CCEEEEE--CSSEEEEEETTCEECCCCCSTTEEEEEEETTEEEEEEEEEEEECSCSSGGGGCSHHHH
T ss_pred CCCCceEEe--cCCEEEEcCCCCcccccccCCCceEEEeCCcCCCccEEEEEeCCCCCChhHCCCHHHH
Confidence 467899997 9999999999997 456789999999999999999999999999999999999994
No 3
>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}
Probab=99.75 E-value=3.4e-19 Score=136.23 Aligned_cols=68 Identities=29% Similarity=0.511 Sum_probs=62.1
Q ss_pred cccCCcccceeCCCCeEEeccCCceEeeec-CCcceecCcccCccceEEEEecCCC-CCcccCCCccccC
Q 032127 80 EIPKNYDAFVDRIDGYSYVYPSDWTEFEFT-GHDSGFKDRYLQLQNVRVRFIPTDK-KDVHDLGPMEEFL 147 (147)
Q Consensus 80 ~~p~g~~~f~d~~dGysflyPs~W~ev~~~-G~d~~f~D~~~~~eNVsV~Vsp~~~-~sI~dfGsPeeva 147 (147)
..|+||+.|.|+.+||+|+||.+|+++.++ |++++|+|+++..+||+|+|+|+.+ ++|+|||+||||+
T Consensus 3 ~~~~g~~~~~D~~~gysf~~P~~W~~~~~~~g~~v~f~d~~~~~~~v~V~v~p~~~~~~l~~~G~~e~va 72 (165)
T 2xb3_A 3 SATSGLQAYVDSYDGYEFLYPRGWVQVQVEDPVDVVFHDIIETTENVSVVVNTVASTKSLEELGSPEEVG 72 (165)
T ss_dssp ---CCEEEEEETTTTEEEEEETTEEEECCCTTEEEEEEESSCTTSEEEEEEEECSSCCCSGGGCCHHHHH
T ss_pred CCCCCceEEEcCCCCEEEEcCCCCeEecCCCCceEEEECcccCCceEEEEEecCCCCCChHHcCCHHHHH
Confidence 368899999999999999999999999998 9999999999999999999999975 9999999999974
No 4
>3hlz_A Uncharacterized protein BT_1490; NP_810393.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=82.22 E-value=1.2 Score=36.76 Aligned_cols=45 Identities=29% Similarity=0.394 Sum_probs=34.6
Q ss_pred ccceeCCCCeEEeccCCceEeeecCCcceecCcccCccceEEEEe
Q 032127 86 DAFVDRIDGYSYVYPSDWTEFEFTGHDSGFKDRYLQLQNVRVRFI 130 (147)
Q Consensus 86 ~~f~d~~dGysflyPs~W~ev~~~G~d~~f~D~~~~~eNVsV~Vs 130 (147)
+-|+.++.=|++.||++|-|.+-.----.|.+|-.=+-|..+.--
T Consensus 5 kk~ISPgaWfs~~yP~~W~EfEd~E~sflFynp~~WtGNfRISay 49 (269)
T 3hlz_A 5 KKFISPGAWFSMNYPSDWNEFEDGEGSFLFYNPDVWTGNFRISAF 49 (269)
T ss_dssp EEEECGGGCEEEEECTTCEEECCCTTEEEEECSSSCCCEEEEEEE
T ss_pred ceeecCCceeEEecCCCcccccCCCCceeeeChhhcccceEEEec
Confidence 568899999999999999987654444577788777777776544
No 5
>1tu1_A Hypothetical protein PA0094; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; 1.95A {Pseudomonas aeruginosa} SCOP: d.107.1.3
Probab=43.95 E-value=22 Score=25.67 Aligned_cols=14 Identities=14% Similarity=0.544 Sum_probs=12.2
Q ss_pred CCCeEEeccCCceE
Q 032127 92 IDGYSYVYPSDWTE 105 (147)
Q Consensus 92 ~dGysflyPs~W~e 105 (147)
-.+++|..|.+|+.
T Consensus 8 ~~Egsl~lP~gw~D 21 (148)
T 1tu1_A 8 LHEADLEIPDAWQD 21 (148)
T ss_dssp CSSEEEEEETTSEE
T ss_pred ECCEEEeCCCCcEe
Confidence 47899999999984
No 6
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}
Probab=29.31 E-value=59 Score=21.88 Aligned_cols=36 Identities=17% Similarity=0.430 Sum_probs=24.6
Q ss_pred ccCCcccceeCCCCeEEec------------------------cCCceEeeecCCcceecC
Q 032127 81 IPKNYDAFVDRIDGYSYVY------------------------PSDWTEFEFTGHDSGFKD 117 (147)
Q Consensus 81 ~p~g~~~f~d~~dGysfly------------------------Ps~W~ev~~~G~d~~f~D 117 (147)
.|.+....++. +|..|+| |.+|+++.-..-.+.|.+
T Consensus 12 lp~~W~e~~~~-~Gr~YYyN~~T~~s~We~P~~~~~~~e~~~~~~~W~~~~~~~Gr~Yy~N 71 (92)
T 2l5f_A 12 AKSMWTEHKSP-DGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKTYYYN 71 (92)
T ss_dssp TTTTEEEEECT-TSCEEEEETTTTEEESSCSGGGTCHHHHHHHSCSEEEEECTTCCEEEEE
T ss_pred CCCCcEEEEcC-CCCEEEEECCCCceecccCccccccccccccccceEEEECCCCCEEEEE
Confidence 56778888887 7888877 678988765433345543
No 7
>3rq0_A Glycosyl hydrolases family protein 16; structural genomics, PSI-biology; HET: PG4 211; 2.02A {Mycobacterium smegmatis}
Probab=25.08 E-value=46 Score=26.99 Aligned_cols=51 Identities=29% Similarity=0.317 Sum_probs=14.2
Q ss_pred hHHHHHH-HHHHHhhhhCCCcccccccc-cCCcccceeCCCCe--EEeccCCceE
Q 032127 55 KRRLLLM-GAGLLTANLLPANSLFAQEI-PKNYDAFVDRIDGY--SYVYPSDWTE 105 (147)
Q Consensus 55 ~RR~aL~-g~aa~~a~~~pa~aA~ae~~-p~g~~~f~d~~dGy--sflyPs~W~e 105 (147)
.||.+|. .++++.+.+.|...|.+... ++.-..|.|..||= +.+=+++|+-
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~g~~lvw~DeF~g~~g~~~d~~~W~~ 62 (269)
T 3rq0_A 8 DRRQMLLLSGLGATAAVLPVPRAAAVPNQTAASYVFADEFDGPAGSAPSAAKWTI 62 (269)
T ss_dssp --------------------------------CCSEEECCCSCTTCCCCTTTEEE
T ss_pred cchhHHHHHHHHHHHHhccchhcccCCCCCCCeEEEEecCCCCCCCCCCcccCEE
Confidence 4666665 22222233334333443332 22345788887763 3566789954
No 8
>2pq4_B Periplasmic nitrate reductase precursor; NAPD/NAPA1-35, mixed beta-alpha sandwich structure, protein- peptide complex, alpha-helix; NMR {Escherichia coli}
Probab=23.38 E-value=34 Score=19.71 Aligned_cols=12 Identities=17% Similarity=0.313 Sum_probs=8.7
Q ss_pred hhHHHHHHHHHH
Q 032127 54 SKRRLLLMGAGL 65 (147)
Q Consensus 54 ~~RR~aL~g~aa 65 (147)
.+||..|-+.++
T Consensus 3 lsRR~FLK~~aa 14 (35)
T 2pq4_B 3 LSRRSFMKANAV 14 (35)
T ss_dssp CCSHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 579999984443
No 9
>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A*
Probab=22.82 E-value=28 Score=20.51 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=14.6
Q ss_pred ccCCceEeeecCCcceecCcccC
Q 032127 99 YPSDWTEFEFTGHDSGFKDRYLQ 121 (147)
Q Consensus 99 yPs~W~ev~~~G~d~~f~D~~~~ 121 (147)
+|.||.++..++-...|-|-+..
T Consensus 9 LP~GWe~~~~~~gr~y~~n~~t~ 31 (46)
T 1jmq_A 9 LPAGWEMAKTSSGQRYFKNHIDQ 31 (46)
T ss_dssp CCTTBCCBCCSSCCCBEEETTTT
T ss_pred CCcCcEEEEcCCCceEEEEecCC
Confidence 79999776555555556555443
No 10
>4aay_B AROB; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species}
Probab=22.00 E-value=19 Score=27.37 Aligned_cols=13 Identities=38% Similarity=0.547 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHH
Q 032127 53 KSKRRLLLMGAGL 65 (147)
Q Consensus 53 ~~~RR~aL~g~aa 65 (147)
..+||+.|.|+++
T Consensus 9 ~~~rr~fl~~~~~ 21 (175)
T 4aay_B 9 DIGRRQFLRGGAL 21 (175)
T ss_dssp -------------
T ss_pred cccHHHHhhhhHH
Confidence 5789999985443
Done!